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Pregenerated sensors for AMMECR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042225

Ensembl transcript IDs: ENSMUST00000041317.3

Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTAAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTaGGGGCTTCTTTGGTTTGCTCTAACACACATAAGAGATGGAACC +
Preference number: 1 (lower is better)
Translates to: VRTGRQAFGAAFGHG*GLLWFALTHIRDGT
Trigger: GGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 90 bp CTAGCCGTACGCTCCCCCGGGCTGAGGAGCTCTGAAATGATGAGATaGTGGAGTAGATGGATTTCACAACAAGATTGGTCTAGTCTGTCT +
Preference number: 1 (lower is better)
Translates to: LAVRSPGLRSSEMMR*WSRWISQQDWSSLS
Trigger: AGACAGACTAGACCAATCTTGTTGTGAAATCCATCTACTCCATCATCTCATCATTTCAGAGCTCCTCAGCCCGGGGGAGCGTACGGCTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR GCA 90 bp GGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTTGGTTTaGTCTAACACACATAAGAGATGGAACCTATTCCAGATGACACTT +
Preference number: 1 (lower is better)
Translates to: GFWSSIWAWLGASLV*SNTHKRWNLFQMTL
Trigger: AAGTGTCATCTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 90 bp CCCTATAAGGGCAAGAAAATGTCAGGTAGCAGCTTGCTTCTATACTaGAAGACTAATCCACCCACAAAGTGTGTCCAAGGAGAAACAACG +
Preference number: 1 (lower is better)
Translates to: PYKGKKMSGSSLLLY*KTNPPTKCVQGETT
Trigger: CGTTGTTTCTCCTTGGACACACTTTGTGGGTGGATTAGTCTTTCAGTATAGAAGCAAGCTGCTACCTGACATTTTCTTGCCCTTATAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 90 bp AAGCCCATGCTAAAGCTCAGCAGCTTATGTTTTCTCTGTATTCAATaGAACTGGCTACTGAGACTGTCTTTCAGGCTAGCAAGTAGCTTC +
Preference number: 1 (lower is better)
Translates to: KPMLKLSSLCFLCIQ*NWLLRLSFRLASSF
Trigger: GAAGCTACTTGCTAGCCTGAAAGACAGTCTCAGTAGCCAGTTCCATTGAATACAGAGAAAACATAAGCTGCTGAGCTTTAGCATGGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 90 bp GCATGGCTGGGGGCTTCTTTGGTTTGCTCTAACACACATAAGAGATaGAACCTATTCCAGATGACACTTTCAAATTCTTGCACATTTGAA +
Preference number: 1 (lower is better)
Translates to: AWLGASLVCSNTHKR*NLFQMTLSNSCTFE
Trigger: TTCAAATGTGCAAGAATTTGAAAGTGTCATCTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 90 bp CTTTGGTTTGCTCTAACACACATAAGAGATGGAACCTATTCCAGATaGCACTTTCAAATTCTTGCACATTTGAAGACAGGAAAAGAGGCC +
Preference number: 1 (lower is better)
Translates to: LWFALTHIRDGTYSR*HFQILAHLKTGKEA
Trigger: GGCCTCTTTTCCTGTCTTCAAATGTGCAAGAATTTGAAAGTGTCATCTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTCTCCATCACTTTCACTaGCCTCCTCAAGGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASLHHFH*PPQGRG
Trigger: CCCCCTCCCTTGAGGAGGTCAGTGAAAGTGATGGAG...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTGCTGACCTCGTCCTTTaGAGCCTGCAGGATGGTTAT +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASADLVL*SLQDGY
Trigger: ATAACCATCCTGCAGGCTTCAAAGGACGAGGTCAGC...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTACAAACTTCCCGGTGTaGGGTGTGCTGTGTGTGCAA +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASTNFPV*GVLCVQ
Trigger: TTGCACACACAGCACACCGCACACCGGGAAGTTTGT...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTGCGGTGTGCTGTGTGTaGAATGGAACCATTTGCATT +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASAVCCV*NGTICI
Trigger: AATGCAAATGGTTCCATTGCACACACAGCACACCGC...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTAATCTGGTACCTGGCTaGCCTTGTTTAAGAACAATA +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASNLVPG*PCLRTI
Trigger: TATTGTTCTTAAACAAGGTCAGCCAGGTACCAGATT...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTGATCTTCTTAACAAATaGCATTGTCCTACCCGTTAC +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASDLLNK*HCPTRY
Trigger: GTAACGGGTAGGACAATGGCATTTGTTAAGAAGATC...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 90 bp AAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTaGGTTTGCTCTAACACACATAAGAGATGGAACCTATTCCAGATG +
Preference number: 2 (lower is better)
Translates to: KAGFWSSIWAWLGAS*VCSNTHKRWNLFQM
Trigger: CATCTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTAATTGTTCTATAACATaGGGCAGTCTCTTCTACAGT +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASNCSIT*GSLFYS
Trigger: ACTGTAGAAGAGACTGCCTCATGTTATAGAACAATT...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTCTGAAATGATGAGATaGTGGAGTAGATGGATTTCA +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASSEMMR*WSRWIS
Trigger: TGAAATCCATCTACTCCATCATCTCATCATTTCAGA...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTGTAGAATATACATTCTaGAGCATTTCACTCACCACT +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASVEYTF*SISLTT
Trigger: AGTGGTGAGTGAAATGCTGCAGAATGTATATTCTAC...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTATTAACATATCTGAATaGCATCTTTACAGGTCTACC +
Preference number: 2 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASINISE*HLYRST
Trigger: GGTAGACCTGTAAAGATGGCATTCAGATATGTTAAT...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCTGCAGAGAGGCCCAGTaGCTGGTTGTGCGGCTCAGT +
Preference number: 2 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVCREAQ*LVVRLS
Trigger: ACTGAGCCGCACAACCAGTCACTGGGCCTCTCTGCA...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCGTTCCTTGCTCTCTGTaGCAAGTCCTATCATGGACC +
Preference number: 2 (lower is better)
Translates to: ISKFSLCHGKYSPANELGVPCSL*QVLSWT
Trigger: GGTCCATGATAGGACTTGTCACAGAGAGCAAGGAAC...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR CCA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCGTCGAAGCTTCACCATaGCAACGGAAACTATCATCA +
Preference number: 2 (lower is better)
Translates to: ISKFSLCHGKYSPANELGVEASP*QRKLSS
Trigger: TGATGATAGTTTCCGTTGCCATGGTGAAGCTTCGAC...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR CCA 90 bp CTACAAAGTCTTTTAGTCAACAGCTACTTAGACACAAAAATGCACTATGCATCAAGGTGTAGGGTCTCCTaGGAAGAGGTCTGCAGAGAG +
Preference number: 2 (lower is better)
Translates to: LQSLLVNSYLDTKMHYASRCRVS*EEVCRE
Trigger: CTCTCTGCAGACCTCTTCCCAGGAGACCCTACACCT...TGATGCATAGTGCATTTTTGTGTCTAAGTAGCTGTTGACTAAAAGACTTTGTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 90 bp AGAGAGCTACTCCAGGTAGCTTTTTGCTTGTTACAAGTCTCACCATaGCATCACCAAAAACTCTTTATGCTGGTGACCGATTCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: RELLQVAFCLLQVSP*HHQKLFMLVTDSKE
Trigger: TTCCTTTGAATCGGTCACCAGCATAAAGAGTTTTTGGTGATGCAATGGTGAGACTTGTAACAAGCAAAAAGCTACCTGGAGTAGCTCTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 90 bp ACCAGGTTACTAAGAAGGGAGGAGAGAGCTACTCCAGGTAGCTTTTaGCTTGTTACAAGTCTCACCATTGCATCACCAAAAACTCTTTAT +
Preference number: 2 (lower is better)
Translates to: TRLLRREERATPGSF*LVTSLTIASPKTLY
Trigger: ATAAAGAGTTTTTGGTGATGCAATGGTGAGACTTGTAACAAGCAAAAAGCTACCTGGAGTAGCTCTCTCCTCCCTTCTTAGTAACCTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR TCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCTTGCCAGAATCATCATaGGTTTTCCTGGGGATAAAC +
Preference number: 2 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVLPESS*VFLGIN
Trigger: GTTTATCCCCAGGAAAACTCATGATGATTCTGGCAA...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 90 bp GTGAAAGGGCCTAGCATTGGTTTGTTTGAAGCACACCATTATAGTTaGTATAACACCCTTTACACTACAAAGTCTTTTAGTCAACAGCTA +
Preference number: 2 (lower is better)
Translates to: VKGPSIGLFEAHHYS*YNTLYTTKSFSQQL
Trigger: TAGCTGTTGACTAAAAGACTTTGTAGTGTAAAGGGTGTTATACAAACTATAATGGTGTGCTTCAAACAAACCAATGCTAGGCCCTTTCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 90 bp ACAACTTTGTCATATACAACAAGAGTGAAAGGGCCTAGCATTGGTTaGTTTGAAGCACACCATTATAGTTTGTATAACACCCTTTACACT +
Preference number: 2 (lower is better)
Translates to: TTLSYTTRVKGPSIG*FEAHHYSLYNTLYT
Trigger: AGTGTAAAGGGTGTTATACAAACTATAATGGTGTGCTTCAAACAAACCAATGCTAGGCCCTTTCACTCTTGTTGTATATGACAAAGTTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR GCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCACAAAGGTCATCTTTTaGCAGAATCATCATGAGTTT +
Preference number: 2 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVTKVIF*QNHHEF
Trigger: AAACTCATGATGATTCTGGCAAAAGATGACCTTTGT...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp GACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATaGCTGGGGGCTTCTTTGGTTTGCTCTAACACACAT +
Preference number: 3 (lower is better)
Translates to: DWKAGFWSSIWA*LGASLVCSNTH
Trigger: ATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp TGTAAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTaGGCATGGCTGGGGGCTTCTTTGGTTTGCTCTAAC +
Preference number: 3 (lower is better)
Translates to: CKDWKAGFWSSI*AWLGASLVCSN
Trigger: GTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTTACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp GGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTaGGGGCTTCTTTGGTTTGCTCTAACACACATAAGA +
Preference number: 3 (lower is better)
Translates to: GRQAFGAAFGHG*GLLWFALTHIR
Trigger: TCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 72 bp CGCTCCCCCGGGCTGAGGAGCTCTGAAATGATGAGATaGTGGAGTAGATGGATTTCACAACAAGATTGGTCT +
Preference number: 3 (lower is better)
Translates to: RSPGLRSSEMMR*WSRWISQQDWS
Trigger: AGACCAATCTTGTTGTGAAATCCATCTACTCCATCATCTCATCATTTCAGAGCTCCTCAGCCCGGGGGAGCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR GCA 72 bp GACAGGAAAAGAGGCCAGTATACAAACTTCCCGGTGTaGGGTGTGCTGTGTGTGCAATGGAACCATTTGCAT +
Preference number: 3 (lower is better)
Translates to: DRKRGQYTNFPV*GVLCVQWNHLH
Trigger: ATGCAAATGGTTCCATTGCACACACAGCACACCGCACACCGGGAAGTTTGTATACTGGCCTCTTTTCCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR GCA 72 bp AGCAGCATTTGGGCATGGCTGGGGGCTTCTTTGGTTTaGTCTAACACACATAAGAGATGGAACCTATTCCAG +
Preference number: 3 (lower is better)
Translates to: SSIWAWLGASLV*SNTHKRWNLFQ
Trigger: CTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR CAA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCGGCGTAAACAGTTCCTaGCTCTCTGTGACAAGTCCT +
Preference number: 3 (lower is better)
Translates to: ISKFSLCHGKYSPANELGGVNSS*LSVTSP
Trigger: AGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCC...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp TTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTTaGTTTGCTCTAACACACATAAGAGATGGAACCTAT +
Preference number: 3 (lower is better)
Translates to: FGAAFGHGWGLL*FALTHIRDGTY
Trigger: ATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 72 bp CAAGCCATGGTGGGAAATATTGCTGACCTCGTCCTTTaGAGCCTGCAGGATGGTTATTCTTCAGTAGAACAT +
Preference number: 3 (lower is better)
Translates to: QAMVGNIADLVL*SLQDGYSSVEH
Trigger: ATGTTCTACTGAAGAATAACCATCCTGCAGGCTTCAAAGGACGAGGTCAGCAATATTTCCCACCATGGCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR TCA 72 bp GGCAAGAAAATGTCAGGTAGCAGCTTGCTTCTATACTaGAAGACTAATCCACCCACAAAGTGTGTCCAAGGA +
Preference number: 3 (lower is better)
Translates to: GKKMSGSSLLLY*KTNPPTKCVQG
Trigger: TCCTTGGACACACTTTGTGGGTGGATTAGTCTTTCAGTATAGAAGCAAGCTGCTACCTGACATTTTCTTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp CTCAGCAGCTTATGTTTTCTCTGTATTCAATGGAACTaGCTACTGAGACTGTCTTTCAGGCTAGCAAGTAGC +
Preference number: 3 (lower is better)
Translates to: LSSLCFLCIQWN*LLRLSFRLASS
Trigger: GCTACTTGCTAGCCTGAAAGACAGTCTCAGTAGCCAGTTCCATTGAATACAGAGAAAACATAAGCTGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp CTAAAGCTCAGCAGCTTATGTTTTCTCTGTATTCAATaGAACTGGCTACTGAGACTGTCTTTCAGGCTAGCA +
Preference number: 3 (lower is better)
Translates to: LKLSSLCFLCIQ*NWLLRLSFRLA
Trigger: TGCTAGCCTGAAAGACAGTCTCAGTAGCCAGTTCCATTGAATACAGAGAAAACATAAGCTGCTGAGCTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CCA 72 bp GGGGCTTCTTTGGTTTGCTCTAACACACATAAGAGATaGAACCTATTCCAGATGACACTTTCAAATTCTTGC +
Preference number: 3 (lower is better)
Translates to: GASLVCSNTHKR*NLFQMTLSNSC
Trigger: GCAAGAATTTGAAAGTGTCATCTGGAATAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR CAA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCGTTGTAGGTTGTAAATaGTTCTATAACATGAGGCAG +
Preference number: 3 (lower is better)
Translates to: ISKFSLCHGKYSPANELGVVGCK*FYNMRQ
Trigger: CTGCCTCATGTTATAGAACAATTTACAACCTACAAC...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR-3UTR CAA 90 bp CTACAAAGTCTTTTAGTCAACAGCTACTTAGACACAAAAATGCACTATGCATCACCATGGTGGGAAATATaGCTGACCTCGTCCTTTGAA +
Preference number: 3 (lower is better)
Translates to: LQSLLVNSYLDTKMHYASPWWEI*LTSSFE
Trigger: TTCAAAGGACGAGGTCAGCAATATTTCCCACCATGG...TGATGCATAGTGCATTTTTGTGTCTAAGTAGCTGTTGACTAAAAGACTTTGTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR GCA 72 bp TATGATTTTAGAGTCCGCATGACCAGTCACGTGACCTaGTCAAGATTGATTAGCACCGTTAAATACATAAAC +
Preference number: 3 (lower is better)
Translates to: YDFRVRMTSHVT*SRLISTVKYIN
Trigger: GTTTATGTATTTAACGGTGCTAATCAATCTTGAGCAGGTCACGTGACTGGTCATGCGGACTCTAAAATCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR TCA 90 bp AGCACAGAAGGCGTAAACAGTTCCTTGCTCTCTGTGACAAGTCCTATCATGGACCCGGGAGCCGGGGGATaGGGACGAGGAGGACGGCGA +
Preference number: 4 (lower is better)
Translates to: STEGVNSSLLSVTSPIMDPGAGG*GRGGRR
Trigger: TCGCCGTCCTCCTCGTCCTCATCCCCCGGCTCCCGG...GTCCATGATAGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCCTTCTGTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR GCA 90 bp AGCACAGAAGGCGTAAACAGTTCCTTGCTCTCTGTGACAAGTCCTATCATGGACGTGGAGACAGCGAGATaGCCCCGCCGCCGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: STEGVNSSLLSVTSPIMDVETAR*PRRRCR
Trigger: GCGGCAGCGGCGGCGGGGGCATCTCGCTGTCTCCAC...GTCCATGATAGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCCTTCTGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR TCA 90 bp AGCACAGAAGGCGTAAACAGTTCCTTGCTCTCTGTGACAAGTCCTATCATGGACGCAGCACATCTCCGCTaGCACCACCATCTTCCGGGA +
Preference number: 4 (lower is better)
Translates to: STEGVNSSLLSVTSPIMDAAHLR*HHHLPG
Trigger: TCCCGGAAGATGGTGGTGTCAGCGGAGATGTGCTGC...GTCCATGATAGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCCTTCTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTCCATGTTACAAACAGTaGGTAGGGCTCGTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASPCYKQ*VGLVGE
Trigger: TTCACCAACGAGCCCTACCCACTGTTTGTAACATGG...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp AAGGACTGGAAGGCAGGCTTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTCTCATCCCTTGTCATTaGTGGAAAACGGCTGTCTTT +
Preference number: 4 (lower is better)
Translates to: KDWKAGFWSSIWAWLGASLIPCH*WKTAVF
Trigger: AAAGACAGCCGTTTTCCACCAATGACAAGGGATGAG...AGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAAGCCTGCCTTCCAGTCCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR GCA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAAACTGGCTCTCCCCGCTaGAGTGAGAGGAGGAGGAGG +
Preference number: 4 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVETGSPR*SERRRR
Trigger: CCTCCTCCTCCTCTCACTGCAGCGGGGAGAGCCAGT...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp CTACAAAGTCTTTTAGTCAACAGCTACTTAGACACAAAAATGCACTATGCATCATCCGCAGCTCAGAGGTaGAGACAGCGAGATGCCCCC +
Preference number: 4 (lower is better)
Translates to: LQSLLVNSYLDTKMHYASSAAQR*RQRDAP
Trigger: GGGGGCATCTCGCTGTCTCCACCTCTGAGCTGCGGA...TGATGCATAGTGCATTTTTGTGTCTAAGTAGCTGTTGACTAAAAGACTTTGTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAACCTCCGGTAGGTAGGTaGCGGTGCGTTTTGATCCTT +
Preference number: 4 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVEPPVGR*RCVLIL
Trigger: AAGGATCAAAACGCACCGCCACCTACCTACCGGAGG...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCGGAATAATGGTTGTATaGCGGAAGGGGATGCCCGAT +
Preference number: 4 (lower is better)
Translates to: ISKFSLCHGKYSPANELGGIMVV*RKGMPD
Trigger: ATCGGGCATCCCCTTCCGCCATACAACCATTATTCC...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp TTTTGGAGCAGCATTTGGGCATGGCTGGGGGCTTCTTaGGTTTGCTCTAACACACATAAGAGATGGAACCTA +
Preference number: 4 (lower is better)
Translates to: FWSSIWAWLGAS*VCSNTHKRWNL
Trigger: TAGGTTCCATCTCTTATGTGTGTTAGAGCAAACCAAAGAAGCCCCCAGCCATGCCCAAATGCTGCTCCAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp GAAGGGAGGAGAGAGCTACTCCAGGTAGCTTTTTGCTaGTTACAAGTCTCACCATTGCATCACCAAAAACTC +
Preference number: 4 (lower is better)
Translates to: EGRRELLQVAFC*LQVSPLHHQKL
Trigger: GAGTTTTTGGTGATGCAATGGTGAGACTTGTAACAAGCAAAAAGCTACCTGGAGTAGCTCTCTCCTCCCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR TCA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCAATGAGTCTATGGTCTaGATATGGTCCCATCCTTGC +
Preference number: 4 (lower is better)
Translates to: ISKFSLCHGKYSPANELGNESMV*IWSHPC
Trigger: GCAAGGATGGGACCATATTCAGACCATAGACTCATT...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp AGCACAGAAGGCGTAAACAGTTCCTTGCTCTCTGTGACAAGTCCTATCATGGACCTGAATGCAAATTCATaGCAGAAAAGGTACCTATGC +
Preference number: 4 (lower is better)
Translates to: STEGVNSSLLSVTSPIMDLNANS*QKRYLC
Trigger: GCATAGGTACCTTTTCTGCCATGAATTTGCATTCAG...GTCCATGATAGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCCTTCTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR GCA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAAGTAGGTAGGTGGCGGTaGGTTTTGATCCTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVEVGRWR*VLILFH
Trigger: ATGAAAAAGGATCAAAACGCACCGCCACCTACCTAC...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCCGAGCAGAAAAGCCTTaGCAGCTCATCCCTTGTCAT +
Preference number: 4 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVRAEKP*QLIPCH
Trigger: ATGACAAGGGATGAGCTGCCAAGGCTTTTCTGCTCG...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR GCA 90 bp CTACAAAGTCTTTTAGTCAACAGCTACTTAGACACAAAAATGCACTATGCATCAATATGGTCCCATCCTTaGTCCTTTGCAACCTCCGGT +
Preference number: 4 (lower is better)
Translates to: LQSLLVNSYLDTKMHYASIWSHP*SFATSG
Trigger: ACCGGAGGTTGCAAAGGAGCAAGGATGGGACCATAT...TGATGCATAGTGCATTTTTGTGTCTAAGTAGCTGTTGACTAAAAGACTTTGTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR GCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCGAAGGGGATGCCCGATaGCATTTTGGAAATGATGAT +
Preference number: 4 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVEGDAR*HFGNDD
Trigger: ATCATCATTTCCAAAATGGCATCGGGCATCCCCTTC...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp TATATGCTGCCTTTCACAATGATTTCCGCGGCCCATTaGAAAGGTAGCTTATGCTTTTCTAAAACAGTGTTG +
Preference number: 4 (lower is better)
Translates to: YMLPFTMISAAH*KGSLCFSKTVL
Trigger: CAACACTGTTTTAGAAAAGCATAAGCTACCTTTCAAATGGGCCGCGGAAATCATTGTGAAAGGCAGCATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCATCCCTTGTCATTGGTaGAAAACGGCTGTCTTTAAG +
Preference number: 4 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVIPCHW*KTAVFK
Trigger: CTTAAAGACAGCCGTTTTCCACCAATGACAAGGGAT...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCTCAGTAATGAGTCTATaGTCTGAATATGGTCCCATC +
Preference number: 4 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVSVMSL*SEYGPI
Trigger: GATGGGACCATATTCAGACCATAGACTCATTACTGA...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CCA 90 bp GACAATGAATTCAGCCAATTACAAACTAGACAAGGATTTTCTGAACTACCAGTCTTTCACTACGGTACCTaGTCAGCTTTATGGTTTTTC +
Preference number: 4 (lower is better)
Translates to: DNEFSQLQTRQGFSELPVFHYGT*SALWFF
Trigger: GAAAAACCATAAAGCTGACCAGGTACCGTAGTGAAA...GACTGGTAGTTCAGAAAATCCTTGTCTAGTTTGTAATTGGCTGAATTCATTGTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp TCATATACAACAAGAGTGAAAGGGCCTAGCATTGGTTaGTTTGAAGCACACCATTATAGTTTGTATAACACC +
Preference number: 4 (lower is better)
Translates to: SYTTRVKGPSIG*FEAHHYSLYNT
Trigger: GGTGTTATACAAACTATAATGGTGTGCTTCAAACAAACCAATGCTAGGCCCTTTCACTCTTGTTGTATATGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp CAACTGGCTAGAACACAACTTGTGCAATTAGAATCTTaGTCTGAGTTAAAGACACATGCTACATATTTCCAC +
Preference number: 4 (lower is better)
Translates to: QLARTQLVQLES*SELKTHATYFH
Trigger: GTGGAAATATGTAGCATGTGTCTTTAACTCAGACAAAGATTCTAATTGCACAAGTTGTGTTCTAGCCAGTTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
3UTR CAA 72 bp CCTAGCATTGGTTTGTTTGAAGCACACCATTATAGTTaGTATAACACCCTTTACACTACAAAGTCTTTTAGT +
Preference number: 4 (lower is better)
Translates to: PSIGLFEAHHYS*YNTLYTTKSFS
Trigger: ACTAAAAGACTTTGTAGTGTAAAGGGTGTTATACAAACTATAATGGTGTGCTTCAAACAAACCAATGCTAGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS GCA 90 bp AAAGTAGGGTTCCCACTCCGCAGCTCAGAGGTGGAGACAGCGAGATaGCCCCGCCGCCGCTGCCGCTGCCGCCGCCGCCGCCGCCGCCGC +
Preference number: 5 (lower is better)
Translates to: KVGFPLRSSEVETAR*PRRRCRCRRRRRRR
Trigger: GCGGCGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGGGGCATCTCGCTGTCTCCACCTCTGAGCTGCGGAGTGGGAACCCTACTTT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS GCA 90 bp CGCCTCCTAGTCCCAGCTCCCCGGCTCGGCACTGGCTCTCCCCGCTaGAGTGAGAGGAGGAGGAGGCGCCACCACCACCACCCGAGCCGG +
Preference number: 5 (lower is better)
Translates to: RLLVPAPRLGTGSPR*SERRRRRHHHHPSR
Trigger: CCGGCTCGGGTGGTGGTGGTGGCGCCTCCTCCTCCTCTCACTGCAGCGGGGAGAGCCAGTGCCGAGCCGGGGAGCTGGGACTAGGAGGCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp AGCACAGAAGGCGTAAACAGTTCCTTGCTCTCTGTGACAAGTCCTATCATGGACCATCCACGCAGTCTTTaGTCTCGACCAATCTTCCAT +
Preference number: 5 (lower is better)
Translates to: STEGVNSSLLSVTSPIMDHPRSL*SRPIFH
Trigger: ATGGAAGATTGGTCGAGACAAAAGACTGCGTGGATG...GTCCATGATAGGACTTGTCACAGAGAGCAAGGAACTGTTTACGCCTTCTGTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAACCCATCCTTGCTCCTTaGCAACCTCCGGTAGGTAGG +
Preference number: 5 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVEPILAP*QPPVGR
Trigger: CCTACCTACCGGAGGTTGCAAAGGAGCAAGGATGGG...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAAAATATGGTCCCATCCTaGCTCCTTTGCAACCTCCGG +
Preference number: 5 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVENMVPS*LLCNLR
Trigger: CCGGAGGTTGCAAAGGAGCAAGGATGGGACCATATT...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp ACAAATGCCATTGTCCTACCCGTTACCATGATGCTCTTAACTAACAATGTCGAAATGCCCGATGCCATTTaGGAAATGATGATGCTGGCG +
Preference number: 5 (lower is better)
Translates to: TNAIVLPVTMMLLTNNVEMPDAI*EMMMLA
Trigger: CGCCAGCATCATCATTTCCAAAATGGCATCGGGCAT...TTCGACATTGTTAGTTAAGAGCATCATGGTAACGGGTAGGACAATGGCATTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp CTACAAAGTCTTTTAGTCAACAGCTACTTAGACACAAAAATGCACTATGCATCATTGGCAGCTCATCCCTaGTCATTGGTGGAAAACGGC +
Preference number: 5 (lower is better)
Translates to: LQSLLVNSYLDTKMHYASLAAHP*SLVENG
Trigger: GCCGTTTTCCACCAATGACAAGGGATGAGCTGCCAA...TGATGCATAGTGCATTTTTGTGTCTAAGTAGCTGTTGACTAAAAGACTTTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS-3UTR CAA 90 bp ATCAGTAAGTTTTCTTTGTGCCATGGGAAGTATAGCCCTGCAAATGAGCTAGGCTTAGTAATTGGAGCTTaGTATCCTCCTTTTCTCAGT +
Preference number: 5 (lower is better)
Translates to: ISKFSLCHGKYSPANELGLVIGA*YPPFLS
Trigger: ACTGAGAAAAGGAGGATACAAAGCTCCAATTACTAA...GCCTAGCTCATTTGCAGGGCTATACTTCCCATGGCACAAAGAAAACTTACTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS GCA 72 bp TTCCCACTCCGCAGCTCAGAGGTGGAGACAGCGAGATaGCCCCGCCGCCGCTGCCGCTGCCGCCGCCGCCGC +
Preference number: 6 (lower is better)
Translates to: FPLRSSEVETAR*PRRRCRCRRRR
Trigger: GCGGCGGCGGCGGCAGCGGCAGCGGCGGCGGGGGCATCTCGCTGTCTCCACCTCTGAGCTGCGGAGTGGGAA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS GCA 72 bp GTCCCAGCTCCCCGGCTCGGCACTGGCTCTCCCCGCTaGAGTGAGAGGAGGAGGAGGCGCCACCACCACCAC +
Preference number: 6 (lower is better)
Translates to: VPAPRLGTGSPR*SERRRRRHHHH
Trigger: GTGGTGGTGGTGGCGCCTCCTCCTCCTCTCACTGCAGCGGGGAGAGCCAGTGCCGAGCCGGGGAGCTGGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS CCA 72 bp GCAGAAAAGCCTTGGCAGCTCATCCCTTGTCATTGGTaGAAAACGGCTGTCTTTAAGGGCACTGGTAAGTGT +
Preference number: 6 (lower is better)
Translates to: AEKPWQLIPCHW*KTAVFKGTGKC
Trigger: ACACTTACCAGTGCCCTTAAAGACAGCCGTTTTCCACCAATGACAAGGGATGAGCTGCCAAGGCTTTTCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS CAA 72 bp ATGGTTGTATGGCGGAAGGGGATGCCCGATGCCATTTaGGAAATGATGATGCTGGCGATGAGCAAGGTATTC +
Preference number: 6 (lower is better)
Translates to: MVVWRKGMPDAI*EMMMLAMSKVF
Trigger: GAATACCTTGCTCATCGCCAGCATCATCATTTCCAAAATGGCATCGGGCATCCCCTTCCGCCATACAACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS CAA 90 bp TCAGGAATAATGGTTGTATGGCGGAAGGGGATGCCCGATGCCATTTaGGAAATGATGATGCTGGCGATGAGCAAGGTATTCAGCATAACT +
Preference number: 6 (lower is better)
Translates to: SGIMVVWRKGMPDAI*EMMMLAMSKVFSIT
Trigger: AGTTATGCTGAATACCTTGCTCATCGCCAGCATCATCATTTCCAAAATGGCATCGGGCATCCCCTTCCGCCATACAACCATTATTCCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS GCA 72 bp GTCCTGAATGCAAATTCATGGCAGAAAAGGTACCTATaGATCCACGCAGTCTTTTGTCTCGACCAATCTTCC +
Preference number: 6 (lower is better)
Translates to: VLNANSWQKRYL*IHAVFCLDQSS
Trigger: GGAAGATTGGTCGAGACAAAAGACTGCGTGGATGCATAGGTACCTTTTCTGCCATGAATTTGCATTCAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS CAA 72 bp ATGGCAGAAAAGGTACCTATGCATCCACGCAGTCTTTaGTCTCGACCAATCTTCCATGTTACAAACAGTGGG +
Preference number: 6 (lower is better)
Translates to: MAEKVPMHPRSL*SRPIFHVTNSG
Trigger: CCCACTGTTTGTAACATGGAAGATTGGTCGAGACAAAAGACTGCGTGGATGCATAGGTACCTTTTCTGCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3
CDS TCA 72 bp TTGTATCCTCCTTTTCTCAGTAATGAGTCTATGGTCTaGATATGGTCCCATCCTTGCTCCTTTGCAACCTCC +
Preference number: 6 (lower is better)
Translates to: LYPPFLSNESMV*IWSHPCSFATS
Trigger: GGAGGTTGCAAAGGAGCAAGGATGGGACCATATTCAGACCATAGACTCATTACTGAGAAAAGGAGGATACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041317.3