RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AMER1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050332

Ensembl transcript IDs: ENSMUST00000084535.6

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCCAGTaGGCTATGGAGGCTGTGGACAGCTCTAGTGCCTGCTGTAGATGG +
Preference number: 1 (lower is better)
Translates to: RFLLPLPNRLVALLQ*AMEAVDSSSACCRW
Trigger: CCATCTACAGCAGGCACTAGAGCTGTCCACAGCCTCCATAGCCCACTGGAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTaGCTTTCCATACCCACAGTCACTGGTCCTCTATGGACTGGGTTA +
Preference number: 1 (lower is better)
Translates to: STKKLASWLWKRPAR*LSIPTVTGPLWTGL
Trigger: TAACCCAGTCCATAGAGGACCAGTGACTGTGGGTATGGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp CACCTTCCCAGAACAGCTTTGGTAGGAGGCCAAGTGGTTAAAATCTaGGCATGTGTCTCTTATGACGATGTGGTTGGGGTAAGGAAGGCC +
Preference number: 1 (lower is better)
Translates to: HLPRTALVGGQVVKI*ACVSYDDVVGVRKA
Trigger: GGCCTTCCTTACCCCAACCACATCGTCATAAGAGACACATGCCCAGATTTTAACCACTTGGCCTCCTACCAAAGCTGTTCTGGGAAGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp TCCCCAAGGCAGAGCTTCCTTGGAGAATCTAAAGCACCAAGAAATTaGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCATAC +
Preference number: 1 (lower is better)
Translates to: SPRQSFLGESKAPRN*HPGFGRGLLGGFPY
Trigger: GTATGGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGCTCTGCCTTGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp AAACATGCTGTCTGCCAGGGTCCACATGCTTGCGTTACCTGGTATTaGTCTTCGGTACATGGGCATCTTCTGTCCTTACCGTGTGGAAAG +
Preference number: 1 (lower is better)
Translates to: KHAVCQGPHACVTWY*SSVHGHLLSLPCGK
Trigger: CTTTCCACACGGTAAGGACAGAAGATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGTGGACCCTGGCAGACAGCATGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp GCTAGAAAACATGCTGTCTGCCAGGGTCCACATGCTTGCGTTACCTaGTATTGGTCTTCGGTACATGGGCATCTTCTGTCCTTACCGTGT +
Preference number: 1 (lower is better)
Translates to: ARKHAVCQGPHACVT*YWSSVHGHLLSLPC
Trigger: ACACGGTAAGGACAGAAGATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGTGGACCCTGGCAGACAGCATGTTTTCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 90 bp AAAAATTGGAGCACAGAAGCAGCAGCCTCCCTAGGCAGATATAATTaGGCTGAACCTGGCCAAAGATGGCAGAGGAAGGTGGGCAAAGTG +
Preference number: 1 (lower is better)
Translates to: KNWSTEAAASLGRYN*AEPGQRWQRKVGKV
Trigger: CACTTTGCCCACCTTCCTCTGCCATCTTTGGCCAGGTTCAGCTCAATTATATCTGCCTAGGGAGGCTGCTGCTTCTGTGCTCCAATTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 90 bp CATGGATGCAAGAGAAGAGAGGGTGCTGTTCATTTCAGAAAGGACTaGAACTGCCATGCAAATCAGCCCTGTAGTTTGGCAGAGCAAGGG +
Preference number: 1 (lower is better)
Translates to: HGCKRREGAVHFRKD*NCHANQPCSLAEQG
Trigger: CCCTTGCTCTGCCAAACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCACCCTCTCTTCTCTTGCATCCATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 90 bp AGTTATAGCAGGTCCCTTCAGAGATATTGCACTGTGCTGTCCTCCTaGACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGG +
Preference number: 1 (lower is better)
Translates to: SYSRSLQRYCTVLSS*TVRVDSFFLFQTGW
Trigger: CCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTTCAGGAGGACAGCACAGTGCAATATCTCTGAAGGGACCTGCTATAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 90 bp GTCCCTAGGCTAGCAGCCAGATCAGTGAAAGGACTTGGAAGGCAATaGTGTTACCCAATCCACAAACTTCTACTTTGCCTCAGGTCCTAC +
Preference number: 1 (lower is better)
Translates to: VPRLAARSVKGLGRQ*CYPIHKLLLCLRSY
Trigger: GTAGGACCTGAGGCAAAGTAGAAGTTTGTGGATTGGGTAACATCATTGCCTTCCAAGTCCTTTCACTGATCTGGCTGCTAGCCTAGGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 90 bp TGCAAGAGAAGAGAGGGTGCTGTTCATTTCAGAAAGGACTGCAACTaGCATGCAAATCAGCCCTGTAGTTTGGCAGAGCAAGGGTACATT +
Preference number: 1 (lower is better)
Translates to: CKRREGAVHFRKDCN*HANQPCSLAEQGYI
Trigger: AATGTACCCTTGCTCTGCCAAACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCACCCTCTCTTCTCTTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp CCTACAACAGGTGAGATGCCTTTGGCATCCTGTCTTAGACAAGCTTaGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTATT +
Preference number: 1 (lower is better)
Translates to: PTTGEMPLASCLRQA*NHFTKGRPRVYLFI
Trigger: AATAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCTCACCTGTTGTAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp GTCATCCCGAGTCTCCTGGTGTTGAATGAGCCCCTAATGCTCCATTaGAGAAACTTAATACAACAAACCACACAATATGGGCATGATACT +
Preference number: 1 (lower is better)
Translates to: VIPSLLVLNEPLMLH*RNLIQQTTQYGHDT
Trigger: AGTATCATGCCCATATTGTGTGGTTTGTTGTATTAAGTTTCTCCAATGGAGCATTAGGGGCTCATTCAACACCAGGAGACTCGGGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp TCACCTAATGCCTTTTCTGGACAATGTTGCCATCTTCTAAATTGCTaGCAAGTCTCATTCAAGGGTGTCTCCCAAGGAGATGACCAATTC +
Preference number: 1 (lower is better)
Translates to: SPNAFSGQCCHLLNC*QVSFKGVSQGDDQF
Trigger: GAATTGGTCATCTCCTTGGGAGACACCCTTGAATGAGACTTGCCAGCAATTTAGAAGATGGCAACATTGTCCAGAAAAGGCATTAGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp CTTCAAGTTCCAAAGTCTGAGATCCCTTCTTGGTGTTTAGATAAATaGATCACCCTGTCTGTTTTCCTCTTTTGCATCTCACAACACCCA +
Preference number: 1 (lower is better)
Translates to: LQVPKSEIPSWCLDK*ITLSVFLFCISQHP
Trigger: TGGGTGTTGTGAGATGCAAAAGAGGAAAACAGACAGGGTGATCCATTTATCTAAACACCAAGAAGGGATCTCAGACTTTGGAACTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 90 bp ATGAATATATGCCCTGGCAAAGAAAGTATGTCTACAAAGCAATCTTaGCTCAGAAGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTT +
Preference number: 1 (lower is better)
Translates to: MNICPGKESMSTKQS*LRRPPASVLKVNCL
Trigger: AAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCTTCTGAGTCAAGATTGCTTTGTAGACATACTTTCTTTGCCAGGGCATATATTCAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 90 bp TCTTGGTGTTTAGATAAATGGATCACCCTGTCTGTTTTCCTCTTTTaGATCTCACAACACCCAATGCTCTATATAGTCAAGCCCAATTTA +
Preference number: 1 (lower is better)
Translates to: SWCLDKWITLSVFLF*ISQHPMLYIVKPNL
Trigger: TAAATTGGGCTTGACTATATAGAGCATTGGGTGTTGTGAGATGCAAAAGAGGAAAACAGACAGGGTGATCCATTTATCTAAACACCAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTaGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATC +
Preference number: 1 (lower is better)
Translates to: QQRKYLSMFGQIPRD*LHIPLVIMLPLPYI
Trigger: GATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 90 bp TCACTTAGTAGATGTGAAGATGGCTTTGAGGTGAGAAGAGGGACATaGGCAGAAGATTTAAAAAGTTCTAACTTTGATCAACATATCGAT +
Preference number: 1 (lower is better)
Translates to: SLSRCEDGFEVRRGT*AEDLKSSNFDQHID
Trigger: ATCGATATGTTGATCAAAGTTAGAACTTTTTAAATCTTCTGCCCATGTCCCTCTTCTCACCTCAAAGCCATCTTCACATCTACTAAGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 90 bp TCAAGACCTCACAGCATTTTCCATAAGCTATCTATCTTTGTATTCTaGTTGAATATGGACAGATTTAATCACCCCCTTATGAGGATTAGT +
Preference number: 1 (lower is better)
Translates to: SRPHSIFHKLSIFVF*LNMDRFNHPLMRIS
Trigger: ACTAATCCTCATAAGGGGGTGATTAAATCTGTCCATATTCAAGCAGAATACAAAGATAGATAGCTTATGGAAAATGCTGTGAGGTCTTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCCCTCCACACCGGGCCTaGTGGAGAATTTTAAAGAAA +
Preference number: 2 (lower is better)
Translates to: STKKLASWLWKRPARWLSPPHRA*WRILKK
Trigger: TTTCTTTAAAATTCTCCATCAGGCCCGGTGTGGAGG...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp AGCTACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATAAGTGAGCCTAAGGGCTaGAGGCAGTGGTGGCACTGG +
Preference number: 2 (lower is better)
Translates to: SYNPLSVLEERTLTPRLISEPKG*RQWWHW
Trigger: CCAGTGCCACCACTGCCTTCAGCCCTTAGGCTCACT...TATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGTAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCGAACCTGGCCAAAGATaGCAGAGGAAGGTGGGCAAA +
Preference number: 2 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLEPGQR*QRKVGK
Trigger: TTTGCCCACCTTCCTCTGCCATCTTTGGCCAGGTTC...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAGTAGCCCTTCTCCAGTaGGCTATGGAGGCTGTGGAC +
Preference number: 2 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQVALLQ*AMEAVD
Trigger: GTCCACAGCCTCCATAGCCCACTGGAGAAGGGCTAC...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 90 bp AAAACATGCTGTCTGCCAGGGTCCACATGCTTGCGTTACCTGGTATaGGTCTTCGGTACATGGGCATCTTCTGTCCTTACCGTGTGGAAA +
Preference number: 2 (lower is better)
Translates to: KTCCLPGSTCLRYLV*VFGTWASSVLTVWK
Trigger: TTTCCACACGGTAAGGACAGAAGATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGTGGACCCTGGCAGACAGCATGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp TTCCAACATTTAGGCTGGGCTTGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTACAGGTGAGATGCCTTTaGCATCCTGTCTTAGACAAG +
Preference number: 2 (lower is better)
Translates to: FQHLGWACLEAEAGGSLLQVRCL*HPVLDK
Trigger: CTTGTCTAAGACAGGATGCCAAAGGCATCTCACCTG...TAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 90 bp CTCCTTCTGTCAGCACATCTTCCCTTAAAGTCACATCCAAATGCATaGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGGCCACA +
Preference number: 2 (lower is better)
Translates to: LLLSAHLPLKSHPNA*SKDLQWSQEVHLAT
Trigger: TGTGGCCAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGACTTTAAGGGAAGATGTGCTGACAGAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGGGAAGTTCTAAAATaGCTGCAACAGCCACAGGCT +
Preference number: 2 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGGEVLK*LQQPQA
Trigger: AGCCTGTGGCTGTTGCAGGCATTTTAGAACTTCCCC...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCAGAAAGGACTGCAACTaGCATGCAAATCAGCCCTGT +
Preference number: 2 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLRKDCN*HANQPC
Trigger: ACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCT...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCAAGAGGGGTTCAGCCTaGAATAAGGATGCATCCCAA +
Preference number: 2 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGKRGSA*NKDASQ
Trigger: TTGGGATGCATCCTTATTGCAGGCTGAACCCCTCTT...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTCATTTAGGCTGGGCTTaGTTGGAGGCAGAGGCAGGT +
Preference number: 2 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLHLGWA*LEAEAG
Trigger: ACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATG...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGTCCAAGGACCTGCAATaGAGTCAGGAGGTTCATCTG +
Preference number: 2 (lower is better)
Translates to: ASLENLKHQEIGILALEESKDLQ*SQEVHL
Trigger: CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGA...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp AGCTACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATACATCCACTTGTGAGCTaGAACAGGGAAGGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: SYNPLSVLEERTLTPRLIHPLVS*NREGKE
Trigger: CTCCTTCCCTTCCCTGTTCCAGCTCACAAGTGGATG...TATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 90 bp CTGGTATCTAAGCTAAAGCCAGATGATCCCCAAGGCAGAGCTTCCTaGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAA +
Preference number: 2 (lower is better)
Translates to: LVSKLKPDDPQGRAS*ENLKHQEIGILALE
Trigger: TTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGCTCTGCCTTGGGGATCATCTGGCTTTAGCTTAGATACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTGACAGCTCTAGTGCCTaGTGTAGATGGCAGCGACAT +
Preference number: 2 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFADSSSA*CRWQRH
Trigger: ATGTCGCTGCCATCTACAGCAGGCACTAGAGCTGTC...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTTTCTCCAGTGGGCTATaGAGGCTGTGGACAGCTCTA +
Preference number: 2 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFAFSSGL*RLWTAL
Trigger: TAGAGCTGTCCACAGCCTCCATAGCCCACTGGAGAA...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGGAAGGTGGGCAAAGTaGAAACTCAGAGGAGTTTAT +
Preference number: 2 (lower is better)
Translates to: ASLENLKHQEIGILALEEGRWAK*KLRGVY
Trigger: ATAAACTCCTCTGAGTTTTCACTTTGCCCACCTTCC...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCCCTCCTAATCTGAGTTaGTTCAAGTTCCAAAGTCTG +
Preference number: 2 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGPPNLS*FKFQSL
Trigger: CAGACTTTGGAACTTGAAGCAACTCAGATTAGGAGG...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTATTGGCTGCTCATCAGTaGTTCATTAGTCAGCAAGGG +
Preference number: 2 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLLAAHQ*FISQQG
Trigger: CCCTTGCTGACTAATGAACCACTGATGAGCAGCCAA...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAAGATGGCTTTGAGGTaGGAAGAGGGACATGGGCAG +
Preference number: 2 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRKMALR*EEGHGQ
Trigger: CTGCCCATGTCCCTCTTCTCACCTCAAAGCCATCTT...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGTCTCAGGATCAGAGCTaGCACTATATAGTAGTACTG +
Preference number: 2 (lower is better)
Translates to: ASLENLKHQEIGILALEESQDQS*HYIVVL
Trigger: CAGTACTACTATATAGTGTCAGCTCTGATCCTGAGA...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTAGAAACCTGCATGGATaGAAGAGAAGAGAGGGTGCT +
Preference number: 2 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFARNLHG*KRREGA
Trigger: AGCACCCTCTCTTCTCTTGCATCCATGCAGGTTTCT...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGTTTACCAATCAAATCTaGTCTTTTGGGGGAAAGGCA +
Preference number: 2 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLFTNQI*SFGGKA
Trigger: TGCCTTTCCCCCAAAAGAGCAGATTTGATTGGTAAA...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 90 bp GAGGTTGAAATAGCATTGTCATCTGTCATCCCGAGTCTCCTGGTGTaGAATGAGCCCCTAATGCTCCATTGGAGAAACTTAATACAACAA +
Preference number: 2 (lower is better)
Translates to: EVEIALSSVIPSLLV*NEPLMLHWRNLIQQ
Trigger: TTGTTGTATTAAGTTTCTCCAATGGAGCATTAGGGGCTCATTCAACACCAGGAGACTCGGGATGACAGATGACAATGCTATTTCAACCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCTTAATCACCCCCTTATaGGGATTAGTGTTTTTGTCT +
Preference number: 2 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGLITPL*GLVFLS
Trigger: AGACAAAAACACTAATCCTCATAAGGGGGTGATTAA...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTACAAGAGAAGAGAGGGTaGTGTTCATTTCAGAAAGGA +
Preference number: 2 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLQEKRG*CSFQKG
Trigger: TCCTTTCTGAAATGAACAGCACCCTCTCTTCTCTTG...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGCAAGTGGTTAAAATCTaGGCATGTGTCTCTTATGAC +
Preference number: 2 (lower is better)
Translates to: ASLENLKHQEIGILALEEQVVKI*ACVSYD
Trigger: GTCATAAGAGACACATGCCCAGATTTTAACCACTTG...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR TCA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTTTCATTGTGATGAGATaGAATTTTTCAGGGACAGGA +
Preference number: 2 (lower is better)
Translates to: RPPASVLKVNCLILSKSPFIVMR*NFSGTG
Trigger: TCCTGTCCCTGAAAAATTTCATCTCATCACAATGAA...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTTCATATAACTCCAATTaGCTCTTCCTTCTGAGTGTT +
Preference number: 2 (lower is better)
Translates to: RPPASVLKVNCLILSKSPSYNSN*LFLLSV
Trigger: AACACTCAGAAGGAAGAGGCAATTGGAGTTATATGA...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTAAAAAGAAACCTGCATaGATGCAAGAGAAGAGAGGG +
Preference number: 2 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLKKKPA*MQEKRG
Trigger: CCCTCTCTTCTCTTGCATCCATGCAGGTTTCTTTTT...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGTATGAATATATGCCCTaGCAAAGAAAGTATGTCTAC +
Preference number: 2 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLYEYMP*QRKYVY
Trigger: GTAGACATACTTTCTTTGCCAGGGCATATATTCATA...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCATCAGTGAAAGGACTTaGAAGGCAATGATGTTACCC +
Preference number: 2 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSISERT*KAMMLP
Trigger: GGGTAACATCATTGCCTTCCAAGTCCTTTCACTGAT...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTTGGTCCTCTATGGACTaGGTTACTAAGAAATTCTCA +
Preference number: 2 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLWSSMD*VTKKFS
Trigger: TGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTAAAGAAAAAGAAACCTaGATGGATGCAAGAGAAGAG +
Preference number: 2 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFAKEKET*MDAREE
Trigger: CTCTTCTCTTGCATCCATGCAGGTTTCTTTTTCTTT...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCCACAAACTTCTACTTTaGCTCAGGTCCTACTCTAAG +
Preference number: 2 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRHKLLL*LRSYSK
Trigger: CTTAGAGTAGGACCTGAGGCAAAGTAGAAGTTTGTG...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATAATAAGATTTTCAAGTaGAACAGCACTACTCACCCC +
Preference number: 2 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHNKIFK*NSTTHP
Trigger: GGGGTGAGTAGTGCTGTTCCACTTGAAAATCTTATT...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTTCTGAGATCCCTTCTTaGTGTTTAGATAAATGGATC +
Preference number: 2 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFASEIPS*CLDKWI
Trigger: GATCCATTTATCTAAACACCAAGAAGGGATCTCAGA...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTCCCCTAATGCTCCATTaGAGAAACTTAATACAACAA +
Preference number: 2 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLPLMLH*RNLIQQ
Trigger: TTGTTGTATTAAGTTTCTCCAATGGAGCATTAGGGG...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGTCCTCTCAAGAAGCCTaGTCCTTTGAAAATGCTAAG +
Preference number: 2 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRSSQEA*SFENAK
Trigger: CTTAGCATTTTCAAAGGACCAGGCTTCTTGAGAGGA...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR GCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGTCTGTTTTCCTCTTTTaGATCTCACAACACCCAATG +
Preference number: 2 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRSVFLF*ISQHPM
Trigger: CATTGGGTGTTGTGAGATGCAAAAGAGGAAAACAGA...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCTGGTGTTTAGATAAATaGATCACCCTGTCTGTTTTC +
Preference number: 2 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRWCLDK*ITLSVF
Trigger: GAAAACAGACAGGGTGATCCATTTATCTAAACACCA...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp CTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCCAGTaGGCTATGGAGGCTGTGGACAGCTCTAGTGCCTGC +
Preference number: 3 (lower is better)
Translates to: LPLPNRLVALLQ*AMEAVDSSSAC
Trigger: GCAGGCACTAGAGCTGTCCACAGCCTCCATAGCCCACTGGAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp CAGTGGGCTATGGAGGCTGTGGACAGCTCTAGTGCCTaGTGTAGATGGCAGCGACATGTAAACAGCAACTCA +
Preference number: 3 (lower is better)
Translates to: QWAMEAVDSSSA*CRWQRHVNSNS
Trigger: TGAGTTGCTGTTTACATGTCGCTGCCATCTACAGCAGGCACTAGAGCTGTCCACAGCCTCCATAGCCCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp CATGCTGTCTGCCAGGGTCCACATGCTTGCGTTACCTaGTATTGGTCTTCGGTACATGGGCATCTTCTGTCC +
Preference number: 3 (lower is better)
Translates to: HAVCQGPHACVT*YWSSVHGHLLS
Trigger: GGACAGAAGATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGTGGACCCTGGCAGACAGCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp AGCACAGAAGCAGCAGCCTCCCTAGGCAGATATAATTaGGCTGAACCTGGCCAAAGATGGCAGAGGAAGGTG +
Preference number: 3 (lower is better)
Translates to: STEAAASLGRYN*AEPGQRWQRKV
Trigger: CACCTTCCTCTGCCATCTTTGGCCAGGTTCAGCTCAATTATATCTGCCTAGGGAGGCTGCTGCTTCTGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp AAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTaGCTTTCCATACCCACAGTCACTGGTCCTCTATGG +
Preference number: 3 (lower is better)
Translates to: KLASWLWKRPAR*LSIPTVTGPLW
Trigger: CCATAGAGGACCAGTGACTGTGGGTATGGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAATTAGGCTGGGCTTGCTaGGAGGCAGAGGCAGGTGGA +
Preference number: 3 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQLGWAC*EAEAGG
Trigger: TCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAA...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCGTCTACAAAGCAATCTaGACTCAGAAGGCCACCAGC +
Preference number: 3 (lower is better)
Translates to: STKKLASWLWKRPARWLSVYKAI*TQKATS
Trigger: GCTGGTGGCCTTCTGAGTCAAGATTGCTTTGTAGAC...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp GCACTGGTGCAGGTGAAAAAGCCACTGGTGGCAGGATaGAATCATGCACCCAACATTCTGAGTGTGGAAAGC +
Preference number: 3 (lower is better)
Translates to: ALVQVKKPLVAG*NHAPNILSVES
Trigger: GCTTTCCACACTCAGAATGTTGGGTGCATGATTTCATCCTGCCACCAGTGGCTTTTTCACCTGCACCAGTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp TTAGTCAGCAAGGGACCAGAGAAGAGGGGTTCAGCCTaGAATAAGGATGCATCCCAAGCCCTGTATAGGTCA +
Preference number: 3 (lower is better)
Translates to: LVSKGPEKRGSA*NKDASQALYRS
Trigger: TGACCTATACAGGGCTTGGGATGCATCCTTATTGCAGGCTGAACCCCTCTTCTCTGGTCCCTTGCTGACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp GCTAGAAAACATGCTGTCTGCCAGGGTCCACATGCTTaGGTTACCTGGTATTGGTCTTCGGTACATGGGCAT +
Preference number: 3 (lower is better)
Translates to: ARKHAVCQGPHA*VTWYWSSVHGH
Trigger: ATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGTGGACCCTGGCAGACAGCATGTTTTCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp ATGGAGGCTGTGGACAGCTCTAGTGCCTGCTGTAGATaGCAGCGACATGTAAACAGCAACTCAAGCTACCTT +
Preference number: 3 (lower is better)
Translates to: MEAVDSSSACCR*QRHVNSNSSYL
Trigger: AAGGTAGCTTGAGTTGCTGTTTACATGTCGCTGCCATCTACAGCAGGCACTAGAGCTGTCCACAGCCTCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp AAGTCACATCCAAATGCATTGTCCAAGGACCTGCAATaGAGTCAGGAGGTTCATCTGGCCACAGCCTTAGGG +
Preference number: 3 (lower is better)
Translates to: KSHPNALSKDLQ*SQEVHLATALG
Trigger: CCCTAAGGCTGTGGCCAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp CAGAGCTTCCTTGGAGAATCTAAAGCACCAAGAAATTaGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGC +
Preference number: 3 (lower is better)
Translates to: QSFLGESKAPRN*HPGFGRGLLGG
Trigger: GCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGTCCCTTCAGAGATATaGCACTGTGCTGTCCTCCTG +
Preference number: 3 (lower is better)
Translates to: ASLENLKHQEIGILALEEVPSEI*HCAVLL
Trigger: CAGGAGGACAGCACAGTGCAATATCTCTGAAGGGAC...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp AGCTACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATACCGAGTCTCCTGGTGTaGAATGAGCCCCTAATGCTC +
Preference number: 3 (lower is better)
Translates to: SYNPLSVLEERTLTPRLIPSLLV*NEPLML
Trigger: GAGCATTAGGGGCTCATTCAACACCAGGAGACTCGG...TATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp AGGTCCCTTCAGAGATATTGCACTGTGCTGTCCTCCTaGACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAA +
Preference number: 3 (lower is better)
Translates to: RSLQRYCTVLSS*TVRVDSFFLFQ
Trigger: TTGGAAGAGGAAGAAGGAATCTACCCTCACAGTTCAGGAGGACAGCACAGTGCAATATCTCTGAAGGGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp AGAGAGGGTGCTGTTCATTTCAGAAAGGACTGCAACTaGCATGCAAATCAGCCCTGTAGTTTGGCAGAGCAA +
Preference number: 3 (lower is better)
Translates to: REGAVHFRKDCN*HANQPCSLAEQ
Trigger: TTGCTCTGCCAAACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCACCCTCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp TTTCTTCTTTGGAATGACTACAGGATGGAGAAACCGTaGATCAGGCCACCCAGCCATGACTGTAACAGTCAC +
Preference number: 3 (lower is better)
Translates to: FLLWNDYRMEKP*IRPPSHDCNSH
Trigger: GTGACTGTTACAGTCATGGCTGGGTGGCCTGATCCACGGTTTCTCCATCCTGTAGTCATTCCAAAGAAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATCCCTCTGCCCAACCCTaGACCCCCAATTCACATGCT +
Preference number: 3 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHPSAQP*TPNSHA
Trigger: AGCATGTGAATTGGGGGTCAAGGGTTGGGCAGAGGG...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCAAGAAGCCTGGTCCTTaGAAAATGCTAAGAACTTGG +
Preference number: 3 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLKKPGP*KMLRTW
Trigger: CCAAGTTCTTAGCATTTTCAAAGGACCAGGCTTCTT...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTGCAACTCAAGCTACCTaGACTAGGCAAGAGGTGTGG +
Preference number: 3 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFAATQAT*TRQEVW
Trigger: CCACACCTCTTGCCTAGTCAAGGTAGCTTGAGTTGC...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCTGGTTACATATCCCATaGGTAATCATGTTGCCATTA +
Preference number: 3 (lower is better)
Translates to: STKKLASWLWKRPARWLSWLHIP*VIMLPL
Trigger: TAATGGCAACATGATTACCAATGGGATATGTAACCA...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp CCCAACATTCTGAGTGTGGAAAGCTACTTCCCTCCTTaGAATAGCACTAAGAGGAGGGACACTGGCATTTAC +
Preference number: 3 (lower is better)
Translates to: PNILSVESYFPP*NSTKRRDTGIY
Trigger: GTAAATGCCAGTGTCCCTCCTCTTAGTGCTATTTCAAGGAGGGAAGTAGCTTTCCACACTCAGAATGTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp CACTGGTGGCAGGATGAAATCATGCACCCAACATTCTaGGTGTGGAAAGCTACTTCCCTCCTTGAAATAGCA +
Preference number: 3 (lower is better)
Translates to: HWWQDEIMHPTF*VWKATSLLEIA
Trigger: TGCTATTTCAAGGAGGGAAGTAGCTTTCCACACTCAGAATGTTGGGTGCATGATTTCATCCTGCCACCAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp AAGAGAAGAGAGGGTGCTGTTCATTTCAGAAAGGACTaGAACTGCCATGCAAATCAGCCCTGTAGTTTGGCA +
Preference number: 3 (lower is better)
Translates to: KRREGAVHFRKD*NCHANQPCSLA
Trigger: TGCCAAACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCACCCTCTCTTCTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp TCTGTCAGCACATCTTCCCTTAAAGTCACATCCAAATaGATTGTCCAAGGACCTGCAATGGAGTCAGGAGGT +
Preference number: 3 (lower is better)
Translates to: SVSTSSLKVTSK*IVQGPAMESGG
Trigger: ACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGACTTTAAGGGAAGATGTGCTGACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp GTAACAAATGCAGATGATTCCATGATGTCTCAGGAATaGGGAAGGGAAGCTCAGGTGCAGCAACAAGCTACA +
Preference number: 3 (lower is better)
Translates to: VTNADDSMMSQE*GREAQVQQQAT
Trigger: TGTAGCTTGTTGCTGCACCTGAGCTTCCCTTCCGCATTCCTGAGACATCATGGAATCATCTGCATTTGTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp AGAACAGCTTTGGTAGGAGGCCAAGTGGTTAAAATCTaGGCATGTGTCTCTTATGACGATGTGGTTGGGGTA +
Preference number: 3 (lower is better)
Translates to: RTALVGGQVVKI*ACVSYDDVVGV
Trigger: TACCCCAACCACATCGTCATAAGAGACACATGCCCAGATTTTAACCACTTGGCCTCCTACCAAAGCTGTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp ACATGCTTGCGTTACCTGGTATTGGTCTTCGGTACATaGGCATCTTCTGTCCTTACCGTGTGGAAAGAGAAT +
Preference number: 3 (lower is better)
Translates to: TCLRYLVLVFGT*ASSVLTVWKEN
Trigger: ATTCTCTTTCCACACGGTAAGGACAGAAGATGCCCATGTACCGAAGACCAATACCAGGTAACGCAAGCATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTATCACATCCAAATGCATaGTCCAAGGACCTGCAATGG +
Preference number: 3 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLSHPNA*SKDLQW
Trigger: CCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp CTAGCAGCCAGATCAGTGAAAGGACTTGGAAGGCAATaGTGTTACCCAATCCACAAACTTCTACTTTGCCTC +
Preference number: 3 (lower is better)
Translates to: LAARSVKGLGRQ*CYPIHKLLLCL
Trigger: GAGGCAAAGTAGAAGTTTGTGGATTGGGTAACATCATTGCCTTCCAAGTCCTTTCACTGATCTGGCTGCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp AAAAAGAAACCTGCATGGATGCAAGAGAAGAGAGGGTaGTGTTCATTTCAGAAAGGACTGCAACTGCCATGC +
Preference number: 3 (lower is better)
Translates to: KKKPAWMQEKRG*CSFQKGLQLPC
Trigger: GCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCACCCTCTCTTCTCTTGCATCCATGCAGGTTTCTTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp GCCTTTTCTGGACAATGTTGCCATCTTCTAAATTGCTaGCAAGTCTCATTCAAGGGTGTCTCCCAAGGAGAT +
Preference number: 3 (lower is better)
Translates to: AFSGQCCHLLNC*QVSFKGVSQGD
Trigger: ATCTCCTTGGGAGACACCCTTGAATGAGACTTGCCAGCAATTTAGAAGATGGCAACATTGTCCAGAAAAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp GATAAAAGCTTTTTAGTGTGCCTACAACAGGTGAGATaGCTTTGGCATCCTGTCTTAGACAAGCTTGGAACC +
Preference number: 3 (lower is better)
Translates to: DKSFLVCLQQVR*LWHPVLDKLGT
Trigger: GGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCTCACCTGTTGTAGGCACACTAAAAAGCTTTTATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp CCCCCTCTTAATAGACCCAACCCTCACAAATGTACATaGCATGTGGATTTTCTTCTTTGGAATGACTACAGG +
Preference number: 3 (lower is better)
Translates to: PPLNRPNPHKCT*HVDFLLWNDYR
Trigger: CCTGTAGTCATTCCAAAGAAGAAAATCCACATGGCATGTACATTTGTGAGGGTTGGGTCTATTAAGAGGGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp AGCTTTTTAGTGTGCCTACAACAGGTGAGATGCCTTTaGCATCCTGTCTTAGACAAGCTTGGAACCACTTTA +
Preference number: 3 (lower is better)
Translates to: SFLVCLQQVRCL*HPVLDKLGTTL
Trigger: TAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCTCACCTGTTGTAGGCACACTAAAAAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp CTCAGAAGGCCACCAGCATCTGTTCTCAAGGTAAATTaGCTTATTTTGAGCAAGAGCCCTATTGATATCTTC +
Preference number: 3 (lower is better)
Translates to: LRRPPASVLKVN*LILSKSPIDIF
Trigger: GAAGATATCAATAGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCTTCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTACGAGACACATGCTACTaGACCCACTCTAAACATAAC +
Preference number: 3 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLRDTCY*THSKHN
Trigger: GTTATGTTTAGAGTGGGTCAAGTAGCATGTGTCTCG...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGTAAATTGCCTTATTTaGAGCAAGAGCCCTATTGAT +
Preference number: 3 (lower is better)
Translates to: ASLENLKHQEIGILALEEVNCLI*SKSPID
Trigger: ATCAATAGGGCTCTTGCTCAAAATAAGGCAATTTAC...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp ACCAAGGAATCACCTAATGCCTTTTCTGGACAATGTTaGCATCTTCTAAATTGCTGGCAAGTCTCATTCAAG +
Preference number: 3 (lower is better)
Translates to: TKESPNAFSGQC*HLLNCWQVSFK
Trigger: CTTGAATGAGACTTGCCAGCAATTTAGAAGATGGCAACATTGTCCAGAAAAGGCATTAGGTGATTCCTTGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp GAGTTGCTTCAAGTTCCAAAGTCTGAGATCCCTTCTTaGTGTTTAGATAAATGGATCACCCTGTCTGTTTTC +
Preference number: 3 (lower is better)
Translates to: ELLQVPKSEIPS*CLDKWITLSVF
Trigger: GAAAACAGACAGGGTGATCCATTTATCTAAACACCAAGAAGGGATCTCAGACTTTGGAACTTGAAGCAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR-3UTR CAA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATCCATTGGTAATCATGTaGCCATTACCATATATCCGC +
Preference number: 3 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHPLVIM*PLPYIR
Trigger: GCGGATATATGGTAATGGCAACATGATTACCAATGG...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp TTAGATAAATGGATCACCCTGTCTGTTTTCCTCTTTTaGATCTCACAACACCCAATGCTCTATATAGTCAAG +
Preference number: 3 (lower is better)
Translates to: LDKWITLSVFLF*ISQHPMLYIVK
Trigger: CTTGACTATATAGAGCATTGGGTGTTGTGAGATGCAAAAGAGGAAAACAGACAGGGTGATCCATTTATCTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp GCAGTTAGTATTTGCTTTAGATACTCAAAAGGAGTCTaGTTCTGTAGACATCTTGGCTATCCCATTTTAGGT +
Preference number: 3 (lower is better)
Translates to: AVSICFRYSKGV*FCRHLGYPILG
Trigger: ACCTAAAATGGGATAGCCAAGATGTCTACAGAAGCAGACTCCTTTTGAGTATCTAAAGCAAATACTAACTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR TCA 72 bp CAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTATTaGTATCTTCACTTAGTAGATGTGAAGATGGCTTTG +
Preference number: 3 (lower is better)
Translates to: QGKLPYFEQEPY*YLHLVDVKMAL
Trigger: CAAAGCCATCTTCACATCTACTAAGTGAAGATATCAATAGGGCTCTTGCTCAAAATAAGGCAATTTACCTTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CCA 72 bp AAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTaGTTACATATCCCATTGGTAATCATGTTGCCATTA +
Preference number: 3 (lower is better)
Translates to: KYLSMFGQIPRD*LHIPLVIMLPL
Trigger: TAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR GCA 72 bp CACAGCATTTTCCATAAGCTATCTATCTTTGTATTCTaGTTGAATATGGACAGATTTAATCACCCCCTTATG +
Preference number: 3 (lower is better)
Translates to: HSIFHKLSIFVF*LNMDRFNHPLM
Trigger: CATAAGGGGGTGATTAAATCTGTCCATATTCAAGCAGAATACAAAGATAGATAGCTTATGGAAAATGCTGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTCCAACATTTAGGCTGGGCTTGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTACTGGCACATGCCTCTTaGGCCTCACGCTGCTCCCGG +
Preference number: 4 (lower is better)
Translates to: FQHLGWACLEAEAGGSLLLAHAS*ASRCSR
Trigger: CCGGGAGCAGCGTGAGGCTCAAGAGGCATGTGCCAG...TAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTCCAACATTTAGGCTGGGCTTGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTACGCACCCTGGGCAGCTaGGGGATACCATGGGTGATA +
Preference number: 4 (lower is better)
Translates to: FQHLGWACLEAEAGGSLLRTLGS*GIPWVI
Trigger: TATCACCCATGGTATCCCTCAGCTGCCCAGGGTGCG...TAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTCCAACATTTAGGCTGGGCTTGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTAAGTCTGAGAACCTCCTaGTGTCCCTGCCACCAGACC +
Preference number: 4 (lower is better)
Translates to: FQHLGWACLEAEAGGSLLSLRTS*CPCHQT
Trigger: GGTCTGGTGGCAGGGACATCAGGAGGTTCTCAGACT...TAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCGAGAGAGAGGCACCTTaGTCACCCCTCTCCTTTGAC +
Preference number: 4 (lower is better)
Translates to: STKKLASWLWKRPARWLSEREAP*SPLSFD
Trigger: GTCAAAGGAGAGGGGTGAGCAAGGTGCCTCTCTCTC...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCTCTCGGTTGGCCCTCTaGCCACCAGAGGCCATGCTA +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLSRLAL*PPEAML
Trigger: TAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGA...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGTGGTCCCATCTCGGTTaGCCCTCTGGCCACCAGAGG +
Preference number: 4 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLWSHLG*PSGHQR
Trigger: CCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCA...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCGGGCTGCATGAACTCTaGGGCACAGGTCCTTGTGAG +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLGLHEL*GTGPCE
Trigger: CTCACAAGGACCTGTGCCTCAGAGTTCATGCAGCCC...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCTCCCAGAGCCTCACCTaGATCATCCTCAAATCCTGG +
Preference number: 4 (lower is better)
Translates to: STKKLASWLWKRPARWLSSQSLT*IILKSW
Trigger: CCAGGATTTGAGGATGATTCAGGTGAGGCTCTGGGA...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCTGGCTCCTCAGGGGGTaGGTAACTAGGGTACGCCTT +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLWLLRG*VTRVRL
Trigger: AAGGCGTACCCTAGTTACTCACCCCCTGAGGAGCCA...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCGGTCCAGGGGCATCCTaGGGTTTGGCATTTTCCTTT +
Preference number: 4 (lower is better)
Translates to: STKKLASWLWKRPARWLSGPGAS*GLAFSF
Trigger: AAAGGAAAATGCCAAACCCCAGGATGCCCCTGGACC...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCCACTATAGCTGTCCCTaGGTAGACAATCCCTGTGGG +
Preference number: 4 (lower is better)
Translates to: STKKLASWLWKRPARWLSHYSCP*VDNPCG
Trigger: CCCACAGGGATTGTCTACCCAGGGACAGCTATAGTG...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCTATAGCAAGGGCCCATaGGCAGGGGTAGGTGCGAAG +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLYSKGP*AGVGAK
Trigger: CTTCGCACCTACCCCTGCCCATGGGCCCTTGCTATA...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCAGCAGGAACTTCGCTTaGTCCCATCTCGGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGSRNFA*SHLGWP
Trigger: GGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCT...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGGCAGTCATCCCCAGGTaGGGAGTGCTCAAGACTGTC +
Preference number: 4 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLAVIPR*GVLKTV
Trigger: GACAGTCTTGAGCACTCCCCACCTGGGGATGACTGC...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCAGAACAGGCTTGGGCTaGATGAACTCTGAGGCACAG +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLRTGLG*MNSEAQ
Trigger: CTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCT...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCTCTGAATCTTCCTGGTaGGCCTGGAGCTCATCAGAC +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLSESSW*AWSSSD
Trigger: GTCTGATGAGCTCCAGGCCCACCAGGAAGATTCAGA...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp AGCTCTTCCCTAGTGTTTCCAACATTTAGGCTGGGCTaGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTAGT +
Preference number: 4 (lower is better)
Translates to: SSSLVFPTFRLG*LGGRGRWISVS
Trigger: ACTAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAAACACTAGGGAAGAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGAACAAGAGGCTTAGCTaGTCCCCAACAGGGCCATTG +
Preference number: 4 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLNKRLS*SPTGPL
Trigger: CAATGGCCCTGTTGGGGATCAGCTAAGCCTCTTGTT...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGCCTAAGGGCCTCATCTaGTACTCCAAGGCAGGCTTC +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEPKGLI*YSKAGF
Trigger: GAAGCCTGCCTTGGAGTATCAGATGAGGCCCTTAGG...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp TTCCAACATTTAGGCTGGGCTTGCTTGGAGGCAGAGGCAGGTGGATCTCTGTTACCATGCTATCTGTCATaGTGTCCATGTCCTGTTCTG +
Preference number: 4 (lower is better)
Translates to: FQHLGWACLEAEAGGSLLPCYLS*CPCPVL
Trigger: CAGAACAGGACATGGACAGCATGACAGATAGCATGG...TAACAGAGATCCACCTGCCTCTGCCTCCAAGCAAGCCCAGCCTAAATGTTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GTGCTGTTCATTTCAGAAAGGACTGCAACTGCCATGCAAATCAGCCCTGTAGTTTCTTCCTGGTGGGCCTaGAGCTCATCAGACTCCATG +
Preference number: 4 (lower is better)
Translates to: VLFISERTATAMQISPVVSSWWA*SSSDSM
Trigger: CATGGAGTCTGATGAGCTCCAGGCCCACCAGGAAGA...AACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GTGCTGTTCATTTCAGAAAGGACTGCAACTGCCATGCAAATCAGCCCTGTAGTTCATCCAAGCAAGACCTaGCCCCACTGGAAGAGGACA +
Preference number: 4 (lower is better)
Translates to: VLFISERTATAMQISPVVHPSKT*PHWKRT
Trigger: TGTCCTCTTCCAGTGGGGCCAGGTCTTGCTTGGATG...AACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCTCTTGCTGGTCGCTCTaGGGTGTCAAAAGTTCTCCA +
Preference number: 4 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGSCWSL*GVKSSP
Trigger: TGGAGAACTTTTGACACCTCAGAGCGACCAGCAAGA...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp AGCTACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATACCTATTGAGTGCCATTaGAGCAGGAGGAGGTCGAGG +
Preference number: 4 (lower is better)
Translates to: SYNPLSVLEERTLTPRLIPIECH*SRRRSR
Trigger: CCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGG...TATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAACACCCAATGCTCTATATAGTCAAGCCCAATTTAGGTGGCTTCTCTTCCTTTAAGTTCCTTGGCCCCTaGCACACTTTGGTCAGCCCC +
Preference number: 4 (lower is better)
Translates to: QHPMLYIVKPNLGGFSSFKFLGP*HTLVSP
Trigger: GGGGCTGACCAAAGTGTGCCAGGGGCCAAGGAACTT...AAAGGAAGAGAAGCCACCTAAATTGGGCTTGACTATATAGAGCATTGGGTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTGGGCTAGGTGAGAACTaGAGAGCTCCAGCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFAGLGEN*RAPAPE
Trigger: CTCTGGAGCTGGAGCTCTCCAGTTCTCACCTAGCCC...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCGTTCAGGCCGCACCCTaGGCAGCTGAGGGATACCAT +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSVQAAP*AAEGYH
Trigger: ATGGTATCCCTCAGCTGCCCAGGGTGCGGCCTGAAC...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTAGTCTTGCCCTTCCGGTaGCGGCGGATACTGCTAAAG +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLVLPFR*RRILLK
Trigger: CTTTAGCAGTATCCGCCGTCACCGGAAGGGCAAGAC...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGCTACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATAGGTTTCCATTGCTGGTaGACTCTACTAGGGCCTGTG +
Preference number: 4 (lower is better)
Translates to: SYNPLSVLEERTLTPRLIGFHCW*TLLGPV
Trigger: CACAGGCCCTAGTAGAGTTCACCAGCAATGGAAACC...TATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTTTCACCTTCTTCATCTaGATCTTCCTGGTGGGCCTG +
Preference number: 4 (lower is better)
Translates to: RPPASVLKVNCLILSKSPFTFFI*IFLVGL
Trigger: CAGGCCCACCAGGAAGATTCAGATGAAGAAGGTGAA...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGACTCTGGGAGGCCTGTaGTTGAAGGTTATAGCAAGG +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEETLGGL*LKVIAR
Trigger: CCTTGCTATAACCTTCAATCACAGGCCTCCCAGAGT...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGCATGCTCATGAGACCTaGTTCTTGCCCCCTCAAGTT +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEHAHET*FLPPQV
Trigger: AACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATG...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GTGCTGTTCATTTCAGAAAGGACTGCAACTGCCATGCAAATCAGCCCTGTAGTTATTGTCATCATCATCTaGCAAGGCCATCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: VLFISERTATAMQISPVVIVIII*QGHLLP
Trigger: GGGGAGGAGATGGCCTTGCCAGATGATGATGACAAT...AACTACAGGGCTGATTTGCATGGCAGTTGCAGTCCTTTCTGAAATGAACAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAGCAACTGCTTCTGGATaGTCACTAGCCGTTCTTCCT +
Preference number: 4 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQATASG*SLAVLP
Trigger: AGGAAGAACGGCTAGTGACCATCCAGAAGCAGTTGC...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTTGGCATGAGCCTCTCTaGCACATGCCTCTTGAGCCT +
Preference number: 4 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFAWHEPL*HMPLEP
Trigger: AGGCTCAAGAGGCATGTGCCAGAGAGGCTCATGCCA...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGGTACATCCCGAGGCTTaGCCCTCCCACTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRVHPEA*PSHSGR
Trigger: CCTCCCAGAGTGGGAGGGCCAAGCCTCGGGATGTAC...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AACTGTGAGGGTAGATTCCTTCTTCCTCTTCCAAACAGGCTGGTAGCCCTTCTCAGGAAATTGAGCAGATaGCTTGGACAAAGGTGTAGA +
Preference number: 4 (lower is better)
Translates to: NCEGRFLLPLPNRLVALLRKLSR*LGQRCR
Trigger: TCTACACCTTTGTCCAAGTCATCTGCTCAATTTCCT...GAGAAGGGCTACCAGCCTGTTTGGAAGAGGAAGAAGGAATCTACCCTCACAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTACTTTCCCAGAACCTTTaGTTCGTCCACCCCCAAAGA +
Preference number: 4 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLLSQNL*FVHPQR
Trigger: TCTTTGGGGGTGGACGAAGCAAAGGTTCTGGGAAAG...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATTTCCTCGGTTTCCATTaGCCCAGGTGGCCGAGAAGA +
Preference number: 4 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHFLGFH*PRWPRR
Trigger: TCTTCTCGGCCACCTGGGGCAATGGAAACCGAGGAA...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCTGCTGGAGACATTTTTaGTCCAGGGGCATCCTGGGG +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSCWRHF*SRGILG
Trigger: CCCCAGGATGCCCCTGGACCAAAAATGTCTCCAGCA...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAACACCCAATGCTCTATATAGTCAAGCCCAATTTAGGTGGCTTCTCTTCCTTTAACAGGGCCATTGGGTaGGTTTACTTCTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: QHPMLYIVKPNLGGFSSFNRAIG*VYFSCH
Trigger: GTGGCAGGAGAAGTAAACCCACCCAATGGCCCTGTT...AAAGGAAGAGAAGCCACCTAAATTGGGCTTGACTATATAGAGCATTGGGTGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTAGGTAGACAATCCCTGTaGGCAAGTCCCAGAGCCTCA +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLGRQSL*ASPRAS
Trigger: TGAGGCTCTGGGACTTGCCCACAGGGATTGTCTACC...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTACATCTTCAGGTCCCTaGGACGCTTCACTTAGACCA +
Preference number: 4 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFATSSGP*DASLRP
Trigger: TGGTCTAAGTGAAGCGTCTCAGGGACCTGAAGATGT...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCGAACTCACATGCTCATaGGACCTGGTTCTTGCCCCC +
Preference number: 4 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRELTCS*DLVLAP
Trigger: GGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTC...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCGTACGCCTTCCTGGGTaGGCCTCCAAAATTTGCTTC +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSVRLPG*ASKICF
Trigger: GAAGCAAATTTTGGAGGCTCACCCAGGAAGGCGTAC...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGGTTTTGAGTGAAGGATaGGTCAGAATCAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLVLSEG*VRIRAV
Trigger: TACAGCTCTGATTCTGACTCATCCTTCACTCAAAAC...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp AGATGCCTTTGGCATCCTGTCTTAGACAAGCTTGGAACCACTTTACAAAGGGGCGATCTTCGTCATTGTTaGACTCAGGATTCTCTTCAC +
Preference number: 4 (lower is better)
Translates to: RCLWHPVLDKLGTTLQRGDLRHC*TQDSLH
Trigger: GTGAAGAGAATCCTGAGTTCAACAATGACGAAGATC...GCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAAGACAGGATGCCAAAGGCATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTTGGGTTTACTTCTCCTaGCACCACTTTTCCTTCTGT +
Preference number: 4 (lower is better)
Translates to: RPPASVLKVNCLILSKSPWVYFS*HHFSFC
Trigger: ACAGAAGGAAAAGTGGTGGCAGGAGAAGTAAACCCA...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCGGCCACCAGAGGCCATaGTATCTGTCATGCTGTCCA +
Preference number: 4 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRGHQRP*YLSCCP
Trigger: TGGACAGCATGACAGATAGCATGGCCTCTGGTGGCC...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGTCCCCAGGTGGGGAGTaGTCAAGACTGTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRSPGGE*SRLSSG
Trigger: GCCAGATGACAGTCTTGAGCACTCCCCACCTGGGGA...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTACAGCTCCAGAGACTCTaGATTGTCAAGGGAACGGCT +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLQLQRL*IVKGTA
Trigger: AGCCGTTCCCTTGACAATGCAGAGTCTCTGGAGCTG...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTAGGATAAGACTGAACTaGGTCAAGAAGCATGTAGCC +
Preference number: 4 (lower is better)
Translates to: RPPASVLKVNCLILSKSPRIRLN*VKKHVA
Trigger: GGCTACATGCTTCTTGACCCAGTTCAGTCTTATCCT...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCTTCCATTGCCCCAGGTaGCCGAGAAGAAAAGGGCTC +
Preference number: 4 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRFHCPR*PRRKGL
Trigger: GAGCCCTTTTCTTCTCGGCCACCTGGGGCAATGGAA...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCGGGCATAAGCTTCTCTaGCATGAGCCTCTCTGGCAC +
Preference number: 4 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRGHKLL*HEPLWH
Trigger: GTGCCAGAGAGGCTCATGCCAGAGAAGCTTATGCCC...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCCAGGGAAAGCTGAAGTaGTTCCCCGGTGAGAAGTCT +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSQGKLK*FPGEKS
Trigger: AGACTTCTCACCGGGGAACCACTTCAGCTTTCCCTG...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGTGCTTCTTGCATGTCTaGCTCAAACATGGCATCACT +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEECFLHV*LKHGIT
Trigger: AGTGATGCCATGTTTGAGCCAGACATGCAAGAAGCA...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAATTGACAGGTCAAGGTTaGAAGCTCGATAGTGATTGG +
Preference number: 4 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQLTGQG*KLDSDW
Trigger: CCAATCACTATCGAGCTTCCAACCTTGACCTGTCAA...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp TCAGCACATCTTCCCTTAAAGTCACATCCAAATGCATaGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCAT +
Preference number: 4 (lower is better)
Translates to: SAHLPLKSHPNA*SKDLQWSQEVH
Trigger: ATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGACTTTAAGGGAAGATGTGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp ATAGCATTGTCATCTGTCATCCCGAGTCTCCTGGTGTaGAATGAGCCCCTAATGCTCCATTGGAGAAACTTA +
Preference number: 4 (lower is better)
Translates to: IALSSVIPSLLV*NEPLMLHWRNL
Trigger: TAAGTTTCTCCAATGGAGCATTAGGGGCTCATTCAACACCAGGAGACTCGGGATGACAGATGACAATGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp CAAGGAGATGACCAATTCCTGGAGGTTGAAATAGCATaGTCATCTGTCATCCCGAGTCTCCTGGTGTTGAAT +
Preference number: 4 (lower is better)
Translates to: QGDDQFLEVEIA*SSVIPSLLVLN
Trigger: ATTCAACACCAGGAGACTCGGGATGACAGATGACAATGCTATTTCAACCTCCAGGAATTGGTCATCTCCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp CAACACCCAATGCTCTATATAGTCAAGCCCAATTTAGGTGGCTTCTCTTCCTTTAGCTCAGGGAGGTTTTaGGTGAAGGATGAGTCAGAA +
Preference number: 4 (lower is better)
Translates to: QHPMLYIVKPNLGGFSSFSSGRF*VKDESE
Trigger: TTCTGACTCATCCTTCACTCAAAACCTCCCTGAGCT...AAAGGAAGAGAAGCCACCTAAATTGGGCTTGACTATATAGAGCATTGGGTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGACTGTGATAGCTGTTaGAGGCATGTTTGTGGTAAT +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEDCDSC*RHVCGN
Trigger: ATTACCACAAACATGCCTTCAACAGCTATCACAGTC...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGTACAGATTCCCTTCTTaGCACCAAAGAGTTTCATGG +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEYRFPS*HQRVSW
Trigger: CCATGAAACTCTTTGGTGGCAAGAAGGGAATCTGTA...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTAGTCCATGTCCTGTTCTaGTATAATGTCACCACAACC +
Preference number: 4 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLVHVLF*YNVTTT
Trigger: GGTTGTGGTGACATTATAGCAGAACAGGACATGGAC...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTTCCCAGTATAGCAACTaGTTCTGGATGGTCACTAGC +
Preference number: 4 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLSQYSN*FWMVTS
Trigger: GCTAGTGACCATCCAGAAGCAGTTGCTATACTGGGA...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGCCCCAACAGGGCCATTaGGTGGGTTTACTTCTCCTG +
Preference number: 4 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRPQQGH*VGLLLL
Trigger: CAGGAGAAGTAAACCCACCCAATGGCCCTGTTGGGG...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTATATAGCAACTGCTTCTaGATGGTCACTAGCCGTTCT +
Preference number: 4 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLYSNCF*MVTSRS
Trigger: AGAACGGCTAGTGACCATCCAGAAGCAGTTGCTATA...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCGAAATCCCTCCAGTCTaGCTCACTGCTAGAAGTAGC +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSEIPPV*LTARSS
Trigger: GCTACTTCTAGCAGTGAGCCAGACTGGAGGGATTTC...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTTGGGAGCTAGGAAATTaGGCAGATGACTTGGACAAA +
Preference number: 4 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLWELGN*ADDLDK
Trigger: TTTGTCCAAGTCATCTGCTCAATTTCCTAGCTCCCA...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTACAGGGAGGTTTTGAGTaGAGGATGAGTCAGAATCAG +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLQGGFE*RMSQNQ
Trigger: CTGATTCTGACTCATCCTTCACTCAAAACCTCCCTG...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGCCAAAATTTGCTTCTTaGATGTCTGGCTCAAACATG +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEPKFAS*MSGSNM
Trigger: CATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGG...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp ATATATCCGCAGCCAAATCTTCTTTCCCCTTCTAGGCTGCAGTTAGTATTTGCTGATTCTCTTCACACTTaGCTTCTCCATCTCGTTCCA +
Preference number: 4 (lower is better)
Translates to: IYPQPNLLSPSRLQLVFADSLHT*LLHLVP
Trigger: TGGAACGAGATGGAGAAGGCAAGTGTGAAGAGAATC...AGCAAATACTAACTGCAGCCTAGAAGGGGAAAGAAGATTTGGCTGCGGATATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGAAAATGTACTTGTGCTaGAGACATTTTTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: ASLENLKHQEIGILALEEKMYLC*RHFWSR
Trigger: CCTGGACCAAAAATGTCTCCAGCACAAGTACATTTT...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGATCATCCTCAAATCCTaGTGTGGTAGAGTCATAATA +
Preference number: 4 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLIILKS*CGRVII
Trigger: TATTATGACTCTACCACACCAGGATTTGAGGATGAT...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATTGTCTGGCTCAAACATaGCATCACTCTGGAAGAGCT +
Preference number: 4 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHCLAQT*HHSGRA
Trigger: AGCTCTTCCAGAGTGATGCCATGTTTGAGCCAGACA...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTAAAATGGAAGAGCAACTaGGCTCATCTACAGGCAGCA +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLKWKSN*AHLQAA
Trigger: TGCTGCCTGTAGATGAGCCCAGTTGCTCTTCCATTT...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp TTAGACAAGCTTGGAACCACTTTACAAAGGGGCGGCCAAGGGTTTATTTATTTAGGTCTGTTTCTTCAATaGCAACATCTTCAGGTCCCT +
Preference number: 4 (lower is better)
Translates to: LDKLGTTLQRGGQGFIYLGLFLQ*QHLQVP
Trigger: AGGGACCTGAAGATGTTGTCATTGAAGAAACAGACC...TAAATAAATAAACCCTTGGCCGCCCCTTTGTAAAGTGGTTCCAAGCTTGTCTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR TCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTCTTCTCAGTAGTTGGTaGAAAATGTACTTGTGCTGG +
Preference number: 4 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLLLSSW*KMYLCW
Trigger: CCAGCACAAGTACATTTTTCACCAACTACTGAGAAG...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAACACCCAATGCTCTATATAGTCAAGCCCAATTTAGGTGGCTTCTCTTCCTTTCACCAAAGAGTTTCATaGCAGTTTTCTTCAGCCTAC +
Preference number: 4 (lower is better)
Translates to: QHPMLYIVKPNLGGFSSFHQRVS*QFSSAY
Trigger: GTAGGCTGAAGAAAACTGCCATGAAACTCTTTGGTG...AAAGGAAGAGAAGCCACCTAAATTGGGCTTGACTATATAGAGCATTGGGTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCCTCCAGCTTTTTCTATaGCTTCAGTCCCAGATGTCT +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSLQLFL*LQSQMS
Trigger: AGACATCTGGGACTGAAGCCATAGAAAAAGCTGGAG...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATAACCTTCATCACTATTaGGAGCAGACTCTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHNLHHY*EQTLAG
Trigger: ACCAGCAAGAGTCTGCTCCCAATAGTGATGAAGGTT...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR GCA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTTGTTGGTCCTTCTGTTaGCTCAGTTGTCTTATTCTT +
Preference number: 4 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLCWSFC*LSCLIL
Trigger: AAGAATAAGACAACTGAGGCAACAGAAGGACCAACA...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp TTCTGTAGACATCTTGGCTATCCCATTTTAGGTTGTAAATATTTTGTCCCTAGGCAGTTGTCTTATTCTTaGCTCCCTTTTCAGCTCCCT +
Preference number: 4 (lower is better)
Translates to: FCRHLGYPILGCKYFVPRQLSYS*LPFQLP
Trigger: AGGGAGCTGAAAAGGGAGCCAAGAATAAGACAACTG...CCTAGGGACAAAATATTTACAACCTAAAATGGGATAGCCAAGATGTCTACAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp CAACACCCAATGCTCTATATAGTCAAGCCCAATTTAGGTGGCTTCTCTTCCTTTCCTTGTGAGTTTTTCTaGATTTTTACAAGCTGCCTT +
Preference number: 4 (lower is better)
Translates to: QHPMLYIVKPNLGGFSSFPCEFF*IFTSCL
Trigger: AAGGCAGCTTGTAAAAATCCAGAAAAACTCACAAGG...AAAGGAAGAGAAGCCACCTAAATTGGGCTTGACTATATAGAGCATTGGGTGTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp TTTGGACAGATACCTAGAGATTGGTTACATATCCCATaGGTAATCATGTTGCCATTACCATATATCCGCAGC +
Preference number: 4 (lower is better)
Translates to: FGQIPRDWLHIP*VIMLPLPYIRS
Trigger: GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCTAGGTATCTGTCCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp ATATTTGGTGCCAGCAAAGGAAGTACTTGTCCATGTTaGGACAGATACCTAGAGATTGGTTACATATCCCAT +
Preference number: 4 (lower is better)
Translates to: IFGASKGSTCPC*DRYLEIGYISH
Trigger: ATGGGATATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTGGCACCAAATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CCA 90 bp GATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCAGCATTCATATTAAATCTTaGGTATATCTGGGCACTTGC +
Preference number: 4 (lower is better)
Translates to: DWLHIPLVIMLPLPYIRSIHIKS*VYLGTC
Trigger: GCAAGTGCCCAGATATACCCAAGATTTAATATGAAT...GCTGCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
3UTR CAA 72 bp AGCATTTTCCATAAGCTATCTATCTTTGTATTCTGCTaGAATATGGACAGATTTAATCACCCCCTTATGAGG +
Preference number: 4 (lower is better)
Translates to: SIFHKLSIFVFC*NMDRFNHPLMR
Trigger: CCTCATAAGGGGGTGATTAAATCTGTCCATATTCAAGCAGAATACAAAGATAGATAGCTTATGGAAAATGCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp GAGTATGGGTGTCTCGGGCATAAGCTTCTCTGGCATGAGCCTCTCTaGCACATGCCTCTTGAGCCTCACGCTGCTCCCGGCGAAGTTCCC +
Preference number: 5 (lower is better)
Translates to: EYGCLGHKLLWHEPL*HMPLEPHAAPGEVP
Trigger: GGGAACTTCGCCGGGAGCAGCGTGAGGCTCAAGAGGCATGTGCCAGAGAGGCTCATGCCAGAGAAGCTTATGCCCGAGACACCCATACTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp CGGCTTCTCCTATTGAGTGCCATTGCAGCAGGAGGAGGTCGAGGGTaGACTCCGGGGAGTCCTAAGTATCGAGGGAGGCTGCTAACTCCC +
Preference number: 5 (lower is better)
Translates to: RLLLLSAIAAGGGRG*TPGSPKYRGRLLTP
Trigger: GGGAGTTAGCAGCCTCCCTCGATACTTAGGACTCCCCGGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp GTCCCTGCCACCAGACCCATCACTGAGGGACCTAAGGGCCTCATCTaGTACTCCAAGGCAGGCTTCTCCTGCCGTACCTTGGTCTCTTGG +
Preference number: 5 (lower is better)
Translates to: VPATRPITEGPKGLI*YSKAGFSCRTLVSW
Trigger: CCAAGAGACCAAGGTACGGCAGGAGAAGCCTGCCTTGGAGTATCAGATGAGGCCCTTAGGTCCCTCAGTGATGGGTCTGGTGGCAGGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp CCAGCTCCAGAGACTCTGCATTGTCAAGGGAACGGCTTCTCCTATTaGGTGCCATTGCAGCAGGAGGAGGTCGAGGGTGGACTCCGGGGA +
Preference number: 5 (lower is better)
Translates to: PAPETLHCQGNGFSY*VPLQQEEVEGGLRG
Trigger: TCCCCGGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAGTCTCTGGAGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 90 bp CTCCAGAGACTCTGCATTGTCAAGGGAACGGCTTCTCCTATTGAGTaGCATTGCAGCAGGAGGAGGTCGAGGGTGGACTCCGGGGAGTCC +
Preference number: 5 (lower is better)
Translates to: LQRLCIVKGTASPIE*HCSRRRSRVDSGES
Trigger: GGACTCCCCGGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAGTCTCTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp CACTGGAAGAGGACAGTGAGCCCAGGGAGGCCAGTCATAGACCCCTaGAGGTTCAGTGTAGAGAGACAAGGGACTATCCCGACCCCATTC +
Preference number: 5 (lower is better)
Translates to: HWKRTVSPGRPVIDP*RFSVERQGTIPTPF
Trigger: GAATGGGGTCGGGATAGTCCCTTGTCTCTCTACACTGAACCTCCAGGGGTCTATGACTGGCCTCCCTGGGCTCACTGTCCTCTTCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp TCCCACTCTGGGAGGCCTGTGATTGAAGGTTATAGCAAGGGCCCATaGGCAGGGGTAGGTGCGAAGGTCGAGCTAGCTGAGACACAGAGT +
Preference number: 5 (lower is better)
Translates to: SHSGRPVIEGYSKGP*AGVGAKVELAETQS
Trigger: ACTCTGTGTCTCAGCTAGCTCGACCTTCGCACCTACCCCTGCCCATGGGCCCTTGCTATAACCTTCAATCACAGGCCTCCCAGAGTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp CACCCCTCTCCTTTGACAGGTCAAGGTTGGAAGCTCGATAGTGATTaGGTTGAAGCTGGAAGGGTTCAGGCCGCACCCTGGGCAGCTGAG +
Preference number: 5 (lower is better)
Translates to: HPSPLTGQGWKLDSD*VEAGRVQAAPWAAE
Trigger: CTCAGCTGCCCAGGGTGCGGCCTGAACCCTTCCAGCTTCAACCCAATCACTATCGAGCTTCCAACCTTGACCTGTCAAAGGAGAGGGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp GTTACCAAGCAGGAACTTCGCTTGGTCCCATCTCGGTTGGCCCTCTaGCCACCAGAGGCCATGCTATCTGTCATGCTGTCCATGTCCTGT +
Preference number: 5 (lower is better)
Translates to: VTKQELRLVPSRLAL*PPEAMLSVMLSMSC
Trigger: ACAGGACATGGACAGCATGACAGATAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp CTTGGTAGGTTACCAAGCAGGAACTTCGCTTGGTCCCATCTCGGTTaGCCCTCTGGCCACCAGAGGCCATGCTATCTGTCATGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: LGRLPSRNFAWSHLG*PSGHQRPCYLSCCP
Trigger: TGGACAGCATGACAGATAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAACCTACCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp CCTGGAGCTCATCAGACTCCATGTAACCCTGGGCTAGGTGAGAACTaGAGAGCTCCAGCTCCAGAGACTCTGCATTGTCAAGGGAACGGC +
Preference number: 5 (lower is better)
Translates to: PGAHQTPCNPGLGEN*RAPAPETLHCQGNG
Trigger: GCCGTTCCCTTGACAATGCAGAGTCTCTGGAGCTGGAGCTCTCCAGTTCTCACCTAGCCCAGGGTTACATGGAGTCTGATGAGCTCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp GCTTGGCTTGAGACTGAGAGTTGGCTCCAGAAATGGAAGAGCAACTaGGCTCATCTACAGGCAGCAGTACATCCCGAGGCTTGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: AWLETESWLQKWKSN*AHLQAAVHPEAWPS
Trigger: GGAGGGCCAAGCCTCGGGATGTACTGCTGCCTGTAGATGAGCCCAGTTGCTCTTCCATTTCTGGAGCCAACTCTCAGTCTCAAGCCAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp AGGGCCTCATCTGATACTCCAAGGCAGGCTTCTCCTGCCGTACCTTaGTCTCTTGGACTCGACCCTCTTGAGAATGAGCCTCTAAGGCCT +
Preference number: 5 (lower is better)
Translates to: RASSDTPRQASPAVP*SLGLDPLENEPLRP
Trigger: AGGCCTTAGAGGCTCATTCTCAAGAGGGTCGAGTCCAAGAGACCAAGGTACGGCAGGAGAAGCCTGCCTTGGAGTATCAGATGAGGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCTCCCCAGGGCAGGCCTaGGTAGAACCGACTGTGATA +
Preference number: 5 (lower is better)
Translates to: STKKLASWLWKRPARWLSSPGQA*VEPTVI
Trigger: TATCACAGTCGGTTCTACCAAGGCCTGCCCTGGGGA...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp AGAGAGAGGCACCTTGCTCACCCCTCTCCTTTGACAGGTCAAGGTTaGAAGCTCGATAGTGATTGGGTTGAAGCTGGAAGGGTTCAGGCC +
Preference number: 5 (lower is better)
Translates to: RERHLAHPSPLTGQG*KLDSDWVEAGRVQA
Trigger: GGCCTGAACCCTTCCAGCTTCAACCCAATCACTATCGAGCTTCCAACCTTGACCTGTCAAAGGAGAGGGGTGAGCAAGGTGCCTCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp AATATCTCCTCAGAGCTGGGCAGAGAGATTGAACTCACATGCTCATaGGACCTGGTTCTTGCCCCCTCAAGTTCCTTGGCCCCTGGCACA +
Preference number: 5 (lower is better)
Translates to: NISSELGREIELTCS*DLVLAPSSSLAPGT
Trigger: TGTGCCAGGGGCCAAGGAACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCTCTGAGGAGATATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp GGAGTAGCTGGTAGAGAGAGAGGCACCTTGCTCACCCCTCTCCTTTaGCAGGTCAAGGTTGGAAGCTCGATAGTGATTGGGTTGAAGCTG +
Preference number: 5 (lower is better)
Translates to: GVAGRERGTLLTPLL*QVKVGSSIVIGLKL
Trigger: CAGCTTCAACCCAATCACTATCGAGCTTCCAACCTTGACCTGTCAAAGGAGAGGGGTGAGCAAGGTGCCTCTCTCTCTACCAGCTACTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp ATTGAAAGGCTCATACAACTGATTAGGGCTCATCCAAGCAAGACCTaGCCCCACTGGAAGAGGACAGTGAGCCCAGGGAGGCCAGTCATA +
Preference number: 5 (lower is better)
Translates to: IERLIQLIRAHPSKT*PHWKRTVSPGRPVI
Trigger: TATGACTGGCCTCCCTGGGCTCACTGTCCTCTTCCAGTGGGGCCAGGTCTTGCTTGGATGAGCCCTAATCAGTTGTATGAGCCTTTCAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAATTGGTCCCATCTCGGTaGGCCCTCTGGCCACCAGAG +
Preference number: 5 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQLVPSR*ALWPPE
Trigger: CTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAA...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTTCTGGCACATGCCTCTaGAGCCTCACGCTGCTCCCG +
Preference number: 5 (lower is better)
Translates to: RPPASVLKVNCLILSKSPSGTCL*SLTLLP
Trigger: CGGGAGCAGCGTGAGGCTCAAGAGGCATGTGCCAGA...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTAGCCCCCTCAAGTTCCTaGGCCCCTGGCACACTTTGG +
Preference number: 5 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLAPSSS*APGTLW
Trigger: CCAAAGTGTGCCAGGGGCCAAGGAACTTGAGGGGGC...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGGCCACCAGCATCTGTTCTCAAGGTAAATTGCCTTATTTTGAGCAAGAGCCCTCTTCCTCGGTTTCCATaGCCCCAGGTGGCCGAGAAG +
Preference number: 5 (lower is better)
Translates to: RPPASVLKVNCLILSKSPLPRFP*PQVAEK
Trigger: CTTCTCGGCCACCTGGGGCAATGGAAACCGAGGAAG...AGGGCTCTTGCTCAAAATAAGGCAATTTACCTTGAGAACAGATGCTGGTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 90 bp GTGTGGGGCTCCTCTAGACTACCACCTTCAAGAACAGGCTTGGGCTaGATGAACTCTGAGGCACAGGTCCTTGTGAGTTTTTCTGGATTT +
Preference number: 5 (lower is better)
Translates to: VWGSSRLPPSRTGLG*MNSEAQVLVSFSGF
Trigger: AAATCCAGAAAAACTCACAAGGACCTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGGTGGTAGTCTAGAGGAGCCCCACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp GCTTCCTTGGAGAATCTAAAGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGAAGCAGGAACTTCGCTaGGTCCCATCTCGGTTGGCC +
Preference number: 5 (lower is better)
Translates to: ASLENLKHQEIGILALEEKQELR*VPSRLA
Trigger: GGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTT...CTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCTTTAGATTCTCCAAGGAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp CTTGGCTCCCTTTTCAGCTCCCTGGTCTTGGGCATCGCTAGAAGTTaGTGCTCCTTTGGTTTGAACAGCTTCATCCTGTTGACTCTCCAT +
Preference number: 5 (lower is better)
Translates to: LGSLFSSLVLGIARS*CSFGLNSFILLTLH
Trigger: ATGGAGAGTCAACAGGATGAAGCTGTTCAAACCAAAGGAGCATCAACTTCTAGCGATGCCCAAGACCAGGGAGCTGAAAAGGGAGCCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAAGGGAGGCTCTGATGTaGGTCCTTCTGTTGCCTCAG +
Preference number: 5 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQREALM*VLLLPQ
Trigger: CTGAGGCAACAGAAGGACCAACATCAGAGCCTCCCT...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGGAACGGCTTCTCCTATaGAGTGCCATTGCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLERLLL*SAIAAG
Trigger: TCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTC...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAGCACTGACACTGGCATaGCCACAGGAGGTACACAAC +
Preference number: 5 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQALTLA*PQEVHN
Trigger: GTTGTGTACCTCCTGTGGCAATGCCAGTGTCAGTGC...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp GAGCCTATCTCCAACGCTCCATTGGCACTCTGGGAGCTAGGAAATTaGGCAGATGACTTGGACAAAGGTGTAGAGAGGTCTGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: EPISNAPLALWELGN*ADDLDKGVERSVSS
Trigger: TGAAGAAACAGACCTCTCTACACCTTTGTCCAAGTCATCTGCTCAATTTCCTAGCTCCCAGAGTGCCAATGGAGCGTTGGAGATAGGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTATCCCCAACAGGGCCATaGGGTGGGTTTACTTCTCCT +
Preference number: 5 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLSPTGP*GGFTSP
Trigger: AGGAGAAGTAAACCCACCCAATGGCCCTGTTGGGGA...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTTTCTCCTGCCGTACCTaGGTCTCTTGGACTCGACCC +
Preference number: 5 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLFSCRT*VSWTRP
Trigger: GGGTCGAGTCCAAGAGACCAAGGTACGGCAGGAGAA...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTAACCTACAGGCTTGGCTaGAGACTGAGAGTTGGCTCC +
Preference number: 5 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLTYRLG*RLRVGS
Trigger: GGAGCCAACTCTCAGTCTCAAGCCAAGCCTGTAGGT...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 90 bp CTCCAACGCTCCATTGGCACTCTGGGAGCTAGGAAATTGAGCAGATaGCTTGGACAAAGGTGTAGAGAGGTCTGTTTCTTCAATGACAAC +
Preference number: 5 (lower is better)
Translates to: LQRSIGTLGARKLSR*LGQRCREVCFFNDN
Trigger: GTTGTCATTGAAGAAACAGACCTCTCTACACCTTTGTCCAAGTCATCTGCTCAATTTCCTAGCTCCCAGAGTGCCAATGGAGCGTTGGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGCACCAAGAAATTGGCATCCTGGCTTTGGAAGAGGCCTGCTAGGTGGCTTTCCTCCAAAATTTGCTTCTaGCATGTCTGGCTCAAACAT +
Preference number: 5 (lower is better)
Translates to: STKKLASWLWKRPARWLSSKICF*HVWLKH
Trigger: ATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGA...GGAAAGCCACCTAGCAGGCCTCTTCCAAAGCCAGGATGCCAATTTCTTGGTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAGGATTCTCTTCACACTaGCCTTCTCCATCTCGTTCC +
Preference number: 5 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQGFSSH*PSPSRS
Trigger: GGAACGAGATGGAGAAGGCAAGTGTGAAGAGAATCC...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TCACATCCAAATGCATTGTCCAAGGACCTGCAATGGAGTCAGGAGGTTCATCTGGTACAGATTCCCTTCTaGCCACCAAAGAGTTTCATG +
Preference number: 5 (lower is better)
Translates to: SHPNALSKDLQWSQEVHLVQIPF*PPKSFM
Trigger: CATGAAACTCTTTGGTGGCAAGAAGGGAATCTGTAC...CAGATGAACCTCCTGACTCCATTGCAGGTCCTTGGACAATGCATTTGGATGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATATCTCCAACGCTCCATaGGCACTCTGGGAGCTAGGA +
Preference number: 5 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHISNAP*ALWELG
Trigger: TCCTAGCTCCCAGAGTGCCAATGGAGCGTTGGAGAT...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp TGGTCCTCTATGGACTGGGTTACTAAGAAATTCTCAGGATCAGAGCTGACACTATCAGTTGTCTTATTCTaGGCTCCCTTTTCAGCTCCC +
Preference number: 5 (lower is better)
Translates to: WSSMDWVTKKFSGSELTLSVVLF*APFSAP
Trigger: GGGAGCTGAAAAGGGAGCCAAGAATAAGACAACTGA...TAGTGTCAGCTCTGATCCTGAGAATTTCTTAGTAACCCAGTCCATAGAGGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ACAATCCCCTTTCTGTCCTGGAAGAGAGAACTCTTACACCTAGACTCATATCTTAGCTGGGCAGAGAGATaGAACTCACATGCTCATGAG +
Preference number: 5 (lower is better)
Translates to: TIPFLSWKRELLHLDSYLSWAER*NSHAHE
Trigger: CTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCT...AAGATATGAGTCTAGGTGTAAGAGTTCTCTCTTCCAGGACAGAAAGGGGATTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCGCTCACCCCTCTCCTTaGACAGGTCAAGGTTGGAAG +
Preference number: 5 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRAHPSP*TGQGWK
Trigger: CTTCCAACCTTGACCTGTCAAAGGAGAGGGGTGAGC...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp ATTATCCACGAGGCTTGTGGTCTGGTATCTAAGCTAAAGCCAGATGATCCCCAAATGTTGGTCCTTCTGTaGCCTCAGTTGTCTTATTCT +
Preference number: 5 (lower is better)
Translates to: IIHEACGLVSKLKPDDPQMLVLL*PQLSYS
Trigger: AGAATAAGACAACTGAGGCAACAGAAGGACCAACAT...TTGGGGATCATCTGGCTTTAGCTTAGATACCAGACCACAAGCCTCGTGGATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCACTTTCCCAGAACCTTaGCTTCGTCCACCCCCAAAG +
Preference number: 5 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRTFPEP*LRPPPK
Trigger: CTTTGGGGGTGGACGAAGCAAAGGTTCTGGGAAAGT...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp AGAGATTGGTTACATATCCCATTGGTAATCATGTTGCCATTACCATATATCCGCCCTTCAAGAACAGGCTaGGGCTGCATGAACTCTGAG +
Preference number: 5 (lower is better)
Translates to: RDWLHIPLVIMLPLPYIRPSRTG*GCMNSE
Trigger: CTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGG...GCGGATATATGGTAATGGCAACATGATTACCAATGGGATATGTAACCAATCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATGAGGTACACAACAGGTaGCCTGCACATAGGAAGACT +
Preference number: 5 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHEVHNR*PAHRKT
Trigger: AGTCTTCCTATGTGCAGGCAACCTGTTGTGTACCTC...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 90 bp TGGGTGAGCCTCCAAAATTTGCTTCTTGCATGTCTGGCTCAAACATaGCATCACTCTGGAAGAGCTGCATTAAACAAGTACTTTGATCTT +
Preference number: 5 (lower is better)
Translates to: WVSLQNLLLACLAQT*HHSGRAALNKYFDL
Trigger: AAGATCAAAGTACTTGTTTAATGCAGCTCTTCCAGAGTGATGCCATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGAGGCTCACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS-3UTR CAA 90 bp CAGCAAAGGAAGTACTTGTCCATGTTTGGACAGATACCTAGAGATTGGTTACATGTGAGCCTCCAAAATTaGCTTCTTGCATGTCTGGCT +
Preference number: 5 (lower is better)
Translates to: QQRKYLSMFGQIPRDWLHVSLQN*LLACLA
Trigger: AGCCAGACATGCAAGAAGCAAATTTTGGAGGCTCAC...ATGTAACCAATCTCTAGGTATCTGTCCAAACATGGACAAGTACTTCCTTTGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp ATCCCGAGGCTTGGCCCTCCCACTCTGGGAGGCCTGTaGTTGAAGGTTATAGCAAGGGCCCATGGGCAGGGG +
Preference number: 6 (lower is better)
Translates to: IPRLGPPTLGGL*LKVIARAHGQG
Trigger: CCCCTGCCCATGGGCCCTTGCTATAACCTTCAATCACAGGCCTCCCAGAGTGGGAGGGCCAAGCCTCGGGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp CCCATGGGCAGGGGTAGGTGCGAAGGTCGAGCTAGCTaGGACACAGAGTCTCCAGGTGTTCTTCCTGGCACT +
Preference number: 6 (lower is better)
Translates to: PMGRGRCEGRAS*DTESPGVLPGT
Trigger: AGTGCCAGGAAGAACACCTGGAGACTCTGTGTCTCAGCTAGCTCGACCTTCGCACCTACCCCTGCCCATGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp CAGGCCGCACCCTGGGCAGCTGAGGGATACCATGGGTaGTACCTACAGGCTTGGCTTGAGACTGAGAGTTGG +
Preference number: 6 (lower is better)
Translates to: QAAPWAAEGYHG*YLQAWLETESW
Trigger: CCAACTCTCAGTCTCAAGCCAAGCCTGTAGGTATCACCCATGGTATCCCTCAGCTGCCCAGGGTGCGGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CAGGAACTTCGCTTGGTCCCATCTCGGTTGGCCCTCTaGCCACCAGAGGCCATGCTATCTGTCATGCTGTCC +
Preference number: 6 (lower is better)
Translates to: QELRLVPSRLAL*PPEAMLSVMLS
Trigger: GGACAGCATGACAGATAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CACCTCCTTGGTAGGTTACCAAGCAGGAACTTCGCTTaGTCCCATCTCGGTTGGCCCTCTGGCCACCAGAGG +
Preference number: 6 (lower is better)
Translates to: HLLGRLPSRNFA*SHLGWPSGHQR
Trigger: CCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAACCTACCAAGGAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CTATTGAGTGCCATTGCAGCAGGAGGAGGTCGAGGGTaGACTCCGGGGAGTCCTAAGTATCGAGGGAGGCTG +
Preference number: 6 (lower is better)
Translates to: LLSAIAAGGGRG*TPGSPKYRGRL
Trigger: CAGCCTCCCTCGATACTTAGGACTCCCCGGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp GGGAGGCCTGTGATTGAAGGTTATAGCAAGGGCCCATaGGCAGGGGTAGGTGCGAAGGTCGAGCTAGCTGAG +
Preference number: 6 (lower is better)
Translates to: GRPVIEGYSKGP*AGVGAKVELAE
Trigger: CTCAGCTAGCTCGACCTTCGCACCTACCCCTGCCCATGGGCCCTTGCTATAACCTTCAATCACAGGCCTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp TGGGCTCATCTACAGGCAGCAGTACATCCCGAGGCTTaGCCCTCCCACTCTGGGAGGCCTGTGATTGAAGGT +
Preference number: 6 (lower is better)
Translates to: WAHLQAAVHPEA*PSHSGRPVIEG
Trigger: ACCTTCAATCACAGGCCTCCCAGAGTGGGAGGGCCAAGCCTCGGGATGTACTGCTGCCTGTAGATGAGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp TCCAGCTCCAGAGACTCTGCATTGTCAAGGGAACGGCTTCTCCTATaGAGTGCCATTGCAGCAGGAGGAGGTCGAGGGTGGACTCCGGGG +
Preference number: 6 (lower is better)
Translates to: SSSRDSALSRERLLL*SAIAAGGGRGWTPG
Trigger: CCCCGGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAGTCTCTGGAGCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp AGGACAGTGAGCCCAGGGAGGCCAGTCATAGACCCCTaGAGGTTCAGTGTAGAGAGACAAGGGACTATCCCG +
Preference number: 6 (lower is better)
Translates to: RTVSPGRPVIDP*RFSVERQGTIP
Trigger: CGGGATAGTCCCTTGTCTCTCTACACTGAACCTCCAGGGGTCTATGACTGGCCTCCCTGGGCTCACTGTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp GTTACCAAGCAGGAACTTCGCTTGGTCCCATCTCGGTaGGCCCTCTGGCCACCAGAGGCCATGCTATCTGTC +
Preference number: 6 (lower is better)
Translates to: VTKQELRLVPSR*ALWPPEAMLSV
Trigger: GACAGATAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp AGCTGGGCAGAGAGATTGAACTCACATGCTCATGAGACCTGGTTCTaGCCCCCTCAAGTTCCTTGGCCCCTGGCACACTTTGGTCAGCCC +
Preference number: 6 (lower is better)
Translates to: SWAERLNSHAHETWF*PPQVPWPLAHFGQP
Trigger: GGGCTGACCAAAGTGTGCCAGGGGCCAAGGAACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 72 bp CTCTGCATTGTCAAGGGAACGGCTTCTCCTATTGAGTaGCATTGCAGCAGGAGGAGGTCGAGGGTGGACTCC +
Preference number: 6 (lower is better)
Translates to: LCIVKGTASPIE*HCSRRRSRVDS
Trigger: GGAGTCCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp TTACCAAGCAGGAACTTCGCTTGGTCCCATCTCGGTTaGCCCTCTGGCCACCAGAGGCCATGCTATCTGTCA +
Preference number: 6 (lower is better)
Translates to: LPSRNFAWSHLG*PSGHQRPCYLS
Trigger: TGACAGATAGCATGGCCTCTGGTGGCCAGAGGGCCAACCGAGATGGGACCAAGCGAAGTTCCTGCTTGGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp CCAGTCTGGCTCACTGCTAGAAGTAGCAGGGAAAGCTaGAGTGGTTCCCCGGTGAGAAGTCTGAGAACCTCC +
Preference number: 6 (lower is better)
Translates to: PVWLTARSSRES*SGSPVRSLRTS
Trigger: GGAGGTTCTCAGACTTCTCACCGGGGAACCACTTCAGCTTTCCCTGCTACTTCTAGCAGTGAGCCAGACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 72 bp TCACGCTGCTCCCGGCGAAGTTCCCAGTATAGCAACTaGTTCTGGATGGTCACTAGCCGTTCTTCCTCGGTT +
Preference number: 6 (lower is better)
Translates to: SRCSRRSSQYSN*FWMVTSRSSSV
Trigger: AACCGAGGAAGAACGGCTAGTGACCATCCAGAAGCAGTTGCTATACTGGGAACTTCGCCGGGAGCAGCGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp TGGGGCTCCTCTAGACTACCACCTTCAAGAACAGGCTaGGGCTGCATGAACTCTGAGGCACAGGTCCTTGTG +
Preference number: 6 (lower is better)
Translates to: WGSSRLPPSRTG*GCMNSEAQVLV
Trigger: CACAAGGACCTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGGTGGTAGTCTAGAGGAGCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp TCTGGATGGTCACTAGCCGTTCTTCCTCGGTTTCCATaGCCCCAGGTGGCCGAGAAGAAAAGGGCTCCAAGT +
Preference number: 6 (lower is better)
Translates to: SGWSLAVLPRFP*PQVAEKKRAPS
Trigger: ACTTGGAGCCCTTTTCTTCTCGGCCACCTGGGGCAATGGAAACCGAGGAAGAACGGCTAGTGACCATCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp AGAGACTCTGCATTGTCAAGGGAACGGCTTCTCCTATaGAGTGCCATTGCAGCAGGAGGAGGTCGAGGGTGG +
Preference number: 6 (lower is better)
Translates to: RDSALSRERLLL*SAIAAGGGRGW
Trigger: CCACCCTCGACCTCCTCCTGCTGCAATGGCACTCAATAGGAGAAGCCGTTCCCTTGACAATGCAGAGTCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp TCAGAGCTGGGCAGAGAGATTGAACTCACATGCTCATaGGACCTGGTTCTTGCCCCCTCAAGTTCCTTGGCC +
Preference number: 6 (lower is better)
Translates to: SELGREIELTCS*DLVLAPSSSLA
Trigger: GGCCAAGGAACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCTCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp CTGAGACACAGAGTCTCCAGGTGTTCTTCCTGGCACTaGCACTGGCATTGCCACAGGAGGTACACAACAGGT +
Preference number: 6 (lower is better)
Translates to: LRHRVSRCSSWH*HWHCHRRYTTG
Trigger: ACCTGTTGTGTACCTCCTGTGGCAATGCCAGTGTCAGTGCCAGGAAGAACACCTGGAGACTCTGTGTCTCAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp TCTGATACTCCAAGGCAGGCTTCTCCTGCCGTACCTTaGTCTCTTGGACTCGACCCTCTTGAGAATGAGCCT +
Preference number: 6 (lower is better)
Translates to: SDTPRQASPAVP*SLGLDPLENEP
Trigger: AGGCTCATTCTCAAGAGGGTCGAGTCCAAGAGACCAAGGTACGGCAGGAGAAGCCTGCCTTGGAGTATCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp GAGACTGAGAGTTGGCTCCAGAAATGGAAGAGCAACTaGGCTCATCTACAGGCAGCAGTACATCCCGAGGCT +
Preference number: 6 (lower is better)
Translates to: ETESWLQKWKSN*AHLQAAVHPEA
Trigger: AGCCTCGGGATGTACTGCTGCCTGTAGATGAGCCCAGTTGCTCTTCCATTTCTGGAGCCAACTCTCAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp GCCTACCTGGGCCTGATAAGGGAGGCTCTGATGTTGGTCCTTCTGTaGCCTCAGTTGTCTTATTCTTGGCTCCCTTTTCAGCTCCCTGGT +
Preference number: 6 (lower is better)
Translates to: AYLGLIREALMLVLL*PQLSYSWLPFQLPG
Trigger: ACCAGGGAGCTGAAAAGGGAGCCAAGAATAAGACAACTGAGGCAACAGAAGGACCAACATCAGAGCCTCCCTTATCAGGCCCAGGTAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp GCAACTGCTTCTGGATGGTCACTAGCCGTTCTTCCTCGGTTTCCATaGCCCCAGGTGGCCGAGAAGAAAAGGGCTCCAAGTTCAAGAAAG +
Preference number: 6 (lower is better)
Translates to: ATASGWSLAVLPRFP*PQVAEKKRAPSSRK
Trigger: CTTTCTTGAACTTGGAGCCCTTTTCTTCTCGGCCACCTGGGGCAATGGAAACCGAGGAAGAACGGCTAGTGACCATCCAGAAGCAGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp GTCTCGGAATATCTCCTCAGAGCTGGGCAGAGAGATTaGACTCACATGCTCATGAGACCTGGTTCTTGCCCC +
Preference number: 6 (lower is better)
Translates to: VSEYLLRAGQRD*THMLMRPGSCP
Trigger: GGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCTCTGAGGAGATATTCCGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CATCAGACTCCATGTAACCCTGGGCTAGGTGAGAACTaGAGAGCTCCAGCTCCAGAGACTCTGCATTGTCAA +
Preference number: 6 (lower is better)
Translates to: HQTPCNPGLGEN*RAPAPETLHCQ
Trigger: TTGACAATGCAGAGTCTCTGGAGCTGGAGCTCTCCAGTTCTCACCTAGCCCAGGGTTACATGGAGTCTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp GAGAGATTGAACTCACATGCTCATGAGACCTGGTTCTaGCCCCCTCAAGTTCCTTGGCCCCTGGCACACTTT +
Preference number: 6 (lower is better)
Translates to: ERLNSHAHETWF*PPQVPWPLAHF
Trigger: AAAGTGTGCCAGGGGCCAAGGAACTTGAGGGGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp GGAGGCTCTGATGTTGGTCCTTCTGTTGCCTCAGTTGTCTTATTCTaGGCTCCCTTTTCAGCTCCCTGGTCTTGGGCATCGCTAGAAGTT +
Preference number: 6 (lower is better)
Translates to: GGSDVGPSVASVVLF*APFSAPWSWASLEV
Trigger: AACTTCTAGCGATGCCCAAGACCAGGGAGCTGAAAAGGGAGCCAAGAATAAGACAACTGAGGCAACAGAAGGACCAACATCAGAGCCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp TCTGAAGTGTGGGGCTCCTCTAGACTACCACCTTCAAGAACAGGCTaGGGCTGCATGAACTCTGAGGCACAGGTCCTTGTGAGTTTTTCT +
Preference number: 6 (lower is better)
Translates to: SEVWGSSRLPPSRTG*GCMNSEAQVLVSFS
Trigger: AGAAAAACTCACAAGGACCTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGGTGGTAGTCTAGAGGAGCCCCACACTTCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp ACACTTTGGTCAGCCCCAGAAGTCTTGCCCTTCCGGTaGCGGCGGATACTGCTAAAGAAGCTTTTTAGGCTT +
Preference number: 6 (lower is better)
Translates to: TLWSAPEVLPFR*RRILLKKLFRL
Trigger: AAGCCTAAAAAGCTTCTTTAGCAGTATCCGCCGTCACCGGAAGGGCAAGACTTCTGGGGCTGACCAAAGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 72 bp GCTCCAAGTTCAAGAAAGGATCCAACATCTCTGAGTTaGGTCCACGGAGGTCATATAGGCAGTCATCCCCAG +
Preference number: 6 (lower is better)
Translates to: APSSRKDPTSLS*VHGGHIGSHPQ
Trigger: CTGGGGATGACTGCCTATATGACCTCCGTGGACGCAACTCAGAGATGTTGGATCCTTTCTTGAACTTGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CAAACAAGAGGCTTAGCTGATCCCCAACAGGGCCATTaGGTGGGTTTACTTCTCCTGCCACCACTTTTCCTT +
Preference number: 6 (lower is better)
Translates to: QTRGLADPQQGH*VGLLLLPPLFL
Trigger: AAGGAAAAGTGGTGGCAGGAGAAGTAAACCCACCCAATGGCCCTGTTGGGGATCAGCTAAGCCTCTTGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp TCAGCCTACCTGGGCCTGATAAGGGAGGCTCTGATGTaGGTCCTTCTGTTGCCTCAGTTGTCTTATTCTTGG +
Preference number: 6 (lower is better)
Translates to: SAYLGLIREALM*VLLLPQLSYSW
Trigger: CCAAGAATAAGACAACTGAGGCAACAGAAGGACCAACATCAGAGCCTCCCTTATCAGGCCCAGGTAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp TGTCTCGGAATATCTCCTCAGAGCTGGGCAGAGAGATaGAACTCACATGCTCATGAGACCTGGTTCTTGCCC +
Preference number: 6 (lower is better)
Translates to: CLGISPQSWAER*NSHAHETWFLP
Trigger: GGGCAAGAACCAGGTCTCATGAGCATGTGAGTTCAATCTCTCTGCCCAGCTCTGAGGAGATATTCCGAGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp GGCTCCAAGTTCAAGAAAGGATCCAACATCTCTGAGTaGCGTCCACGGAGGTCATATAGGCAGTCATCCCCA +
Preference number: 6 (lower is better)
Translates to: GSKFKKGSNISE*RPRRSYRQSSP
Trigger: TGGGGATGACTGCCTATATGACCTCCGTGGACGCAACTCAGAGATGTTGGATCCTTTCTTGAACTTGGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 72 bp TCCTCTAGACTACCACCTTCAAGAACAGGCTTGGGCTaGATGAACTCTGAGGCACAGGTCCTTGTGAGTTTT +
Preference number: 6 (lower is better)
Translates to: SSRLPPSRTGLG*MNSEAQVLVSF
Trigger: AAAACTCACAAGGACCTGTGCCTCAGAGTTCATGCAGCCCAAGCCTGTTCTTGAAGGTGGTAGTCTAGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS GCA 72 bp TACGCCTTCCTGGGTGAGCCTCCAAAATTTGCTTCTTaGATGTCTGGCTCAAACATGGCATCACTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: YAFLGEPPKFAS*MSGSNMASLWK
Trigger: CTTCCAGAGTGATGCCATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGAGGCTCACCCAGGAAGGCGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp GGCCTGATAAGGGAGGCTCTGATGTTGGTCCTTCTGTaGCCTCAGTTGTCTTATTCTTGGCTCCCTTTTCAG +
Preference number: 6 (lower is better)
Translates to: GLIREALMLVLL*PQLSYSWLPFQ
Trigger: CTGAAAAGGGAGCCAAGAATAAGACAACTGAGGCAACAGAAGGACCAACATCAGAGCCTCCCTTATCAGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp TTTAGCGATGTAACATCCCCAAACAAGAGGCTTAGCTaGTCCCCAACAGGGCCATTGGGTGGGTTTACTTCT +
Preference number: 6 (lower is better)
Translates to: FSDVTSPNKRLS*SPTGPLGGFTS
Trigger: AGAAGTAAACCCACCCAATGGCCCTGTTGGGGATCAGCTAAGCCTCTTGTTTGGGGATGTTACATCGCTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp TCATCACTATTGGGAGCAGACTCTTGCTGGTCGCTCTaGGGTGTCAAAAGTTCTCCAAGGCCTAGATTAGGA +
Preference number: 6 (lower is better)
Translates to: SSLLGADSCWSL*GVKSSPRPRLG
Trigger: TCCTAATCTAGGCCTTGGAGAACTTTTGACACCTCAGAGCGACCAGCAAGAGTCTGCTCCCAATAGTGATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS TCA 72 bp AGGGCAGGCCTTGGTAGAACCGACTGTGATAGCTGTTaGAGGCATGTTTGTGGTAATAACCCAGCTCAAAAG +
Preference number: 6 (lower is better)
Translates to: RAGLGRTDCDSC*RHVCGNNPAQK
Trigger: CTTTTGAGCTGGGTTATTACCACAAACATGCCTTCAACAGCTATCACAGTCGGTTCTACCAAGGCCTGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp GAGTACAGATTCCCTTCTTGCCACCAAAGAGTTTCATaGCAGTTTTCTTCAGCCTACCTGGGCCTGATAAGG +
Preference number: 6 (lower is better)
Translates to: EYRFPSCHQRVS*QFSSAYLGLIR
Trigger: CCTTATCAGGCCCAGGTAGGCTGAAGAAAACTGCCATGAAACTCTTTGGTGGCAAGAAGGGAATCTGTACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp GCTGTAAGATCTTCGTCATTGTTGAACTCAGGATTCTCTTCACACTaGCCTTCTCCATCTCGTTCCACGTCAGCAATATCAAAGGTGACC +
Preference number: 6 (lower is better)
Translates to: AVRSSSLLNSGFSSH*PSPSRSTSAISKVT
Trigger: GGTCACCTTTGATATTGCTGACGTGGAACGAGATGGAGAAGGCAAGTGTGAAGAGAATCCTGAGTTCAACAATGACGAAGATCTTACAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 90 bp TTACTCTTGTTTAGACTTTTCTTAGAGCTGACTTTCCCAGAACCTTaGCTTCGTCCACCCCCAAAGAAACTAGGCAGAGTACAGATTCCC +
Preference number: 6 (lower is better)
Translates to: LLLFRLFLELTFPEP*LRPPPKKLGRVQIP
Trigger: GGGAATCTGTACTCTGCCTAGTTTCTTTGGGGGTGGACGAAGCAAAGGTTCTGGGAAAGTCAGCTCTAAGAAAAGTCTAAACAAGAGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CAA 72 bp TCTTCGTCATTGTTGAACTCAGGATTCTCTTCACACTaGCCTTCTCCATCTCGTTCCACGTCAGCAATATCA +
Preference number: 6 (lower is better)
Translates to: SSSLLNSGFSSH*PSPSRSTSAIS
Trigger: TGATATTGCTGACGTGGAACGAGATGGAGAAGGCAAGTGTGAAGAGAATCCTGAGTTCAACAATGACGAAGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6
CDS CCA 72 bp CTCCAAAATTTGCTTCTTGCATGTCTGGCTCAAACATaGCATCACTCTGGAAGAGCTGCATTAAACAAGTAC +
Preference number: 6 (lower is better)
Translates to: LQNLLLACLAQT*HHSGRAALNKY
Trigger: GTACTTGTTTAATGCAGCTCTTCCAGAGTGATGCCATGTTTGAGCCAGACATGCAAGAAGCAAATTTTGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000084535.6