Pregenerated sensors for AMELX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031354Ensembl transcript IDs: ENSMUST00000066112.12, ENSMUST00000112118.8, ENSMUST00000112119.8, ENSMUST00000112120.8
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GGCAATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTGGGGCTGGAAGGGCTaGTGGAAGGGCTGCTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: GNIEHYYMPLCSGKVGEWWGWKG*WKGCWA Trigger: CGCCCAGCAGCCCTTCCAGCAGCCCTTCCAGCCCCA...CCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGGCTGGAAGGGCTGCTaGAAGGGCTGCTGGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLGWKGC*KGCWAD Trigger: ATCCGCCCAGCAGCCCTTCCAGCAGCCCTTCCAGCC...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGGAATGGCCTGGGGCTaGAAGGGCTGCTGGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLGMAWG*KGCWKG Trigger: GCCCTTCCAGCAGCCCTTCCAGCCCCAGGCCATTCC...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGTGGGGTGGAATGGCCTaGGGCTGGAAGGGCTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLWGGMA*GWKGCW Trigger: CCAGCAGCCCTTCCAGCCCCAGGCCATTCCACCCCA...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | GGCAATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGGCAGCTCAGGAAGAATaGGGGACAGGGGCTGCATGG | + |
|
Preference number: 4 (lower is better) Translates to: GNIEHYYMPLCSGKVGEWAAQEE*GTGAAW Trigger: CCATGCAGCCCCTGTCCCCCATTCTTCCTGAGCTGC...CCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR TCA 90 bp | ATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGAACCAGGGCTTCCAGGATaGGGTGGTAGGGGCATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IEHYYMPLCSGKVGEWLEPGLPG*GGRGIA Trigger: TGCTATGCCCCTACCACCTCATCCTGGAAGCCCTGG...TTCCAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR GCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATGGGGCTGGAAGGGCTaGTGGAAGGGCTGCTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSWGWKG*WKGCWA Trigger: CGCCCAGCAGCCCTTCCAGCAGCCCTTCCAGCCCCA...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | ATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGAATGTGGTGCCAGGGGCTaGATGGGATGCAGAGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: IEHYYMPLCSGKVGEWLECGARG*MGCRGD Trigger: GTCACCTCTGCATCCCATGCAGCCCCTGGCACCACA...TTCCAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR TCA 90 bp | GGCAATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGCTCGGGGGATGCTGTTaGGACAGCACAGGGATGATT | + |
|
Preference number: 4 (lower is better) Translates to: GNIEHYYMPLCSGKVGEWLGGCC*DSTGMI Trigger: AATCATCCCTGTGCTGTCTCAACAGCATCCCCCGAG...CCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR GCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGATGGGGGACAGGGGCTaGATGGAGAACAGTGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLMGDRG*MENSGG Trigger: GCCTCCACTGTTCTCCATGCAGCCCCTGTCCCCCAT...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAGGCTGGAAGGGCTGCTaGAAGGGCTGCTGGGCGGAT | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSGWKGC*KGCWAD Trigger: ATCCGCCCAGCAGCCCTTCCAGCAGCCCTTCCAGCC...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAGGAATGGCCTGGGGCTaGAAGGGCTGCTGGAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSGMAWG*KGCWKG Trigger: GCCCTTCCAGCAGCCCTTCCAGCCCCAGGCCATTCC...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR TCA 90 bp | ATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGAAGGAGGGATGTTTGGCTaGTGGTGTTGGGTTGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: IEHYYMPLCSGKVGEWLEGGMFG*WCWVGV Trigger: GACTCCAACCCAACACCATCAGCCAAACATCCCTCC...TTCCAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGTGCTGGAAGGGCTGCTaGGCGGATGGAGGGATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLCWKGC*ADGGMF Trigger: AAACATCCCTCCATCCGCCCAGCAGCCCTTCCAGCA...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CCA 90 bp | CTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTTGGGGTGGAATGGCCTaGGGCTGGAAGGGCTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LELFLKTTKVSTSVLSFSWGGMA*GWKGCW Trigger: CCAGCAGCCCTTCCAGCCCCAGGCCATTCCACCCCA...AGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | AATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGCTGATGAGACTGGGGTaGAATGGCCTGGGGCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: NIEHYYMPLCSGKVGEWLLMRLG*NGLGLE Trigger: TTCCAGCCCCAGGCCATTCCACCCCAGTCTCATCAG...CAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR TCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCACCAGGGCTTCCAGGATaGGGTGGTAGGGGCATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSPGLPG*GGRGIA Trigger: TGCTATGCCCCTACCACCTCATCCTGGAAGCCCTGG...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATGTGGTGCCAGGGGCTaGATGGGATGCAGAGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSCGARG*MGCRGD Trigger: GTCACCTCTGCATCCCATGCAGCCCCTGGCACCACA...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAATGGGGGACAGGGGCTaGATGGAGAACAGTGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSMGDRG*MENSGG Trigger: GCCTCCACTGTTCTCCATGCAGCCCCTGTCCCCCAT...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAGCAGCTCAGGAAGAATaGGGGACAGGGGCTGCATGG | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSAAQEE*GTGAAW Trigger: CCATGCAGCCCCTGTCCCCCATTCTTCCTGAGCTGC...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR TCA 90 bp | CTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTCCAGGGCTTCCAGGATaGGGTGGTAGGGGCATAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LELFLKTTKVSTSVLSFSPGLPG*GGRGIA Trigger: TGCTATGCCCCTACCACCTCATCCTGGAAGCCCTGG...AGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | GGCAATATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGACGGCTGCCTTATCATaGTCTGGTACCACTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: GNIEHYYMPLCSGKVGEWTAALS*SGTTSK Trigger: CTTTGAAGTGGTACCAGAGCATGATAAGGCAGCCGT...CCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAATATTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR GCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAATGTGGTGCCAGGGGCTaGATGGGATGCAGAGGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSECGARG*MGCRGD Trigger: GTCACCTCTGCATCCCATGCAGCCCCTGGCACCACA...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAAATGGGGGACAGGGGCTaGATGGAGAACAGTGGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSEMGDRG*MENSGG Trigger: GCCTCCACTGTTCTCCATGCAGCCCCTGTCCCCCAT...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATGCTGGAAGGGCTGCTaGGCGGATGGAGGGATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSCWKGC*ADGGMF Trigger: AAACATCCCTCCATCCGCCCAGCAGCCCTTCCAGCA...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAAGCAGCTCAGGAAGAATaGGGGACAGGGGCTGCATGG | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSEAAQEE*GTGAAW Trigger: CCATGCAGCCCCTGTCCCCCATTCTTCCTGAGCTGC...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR TCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAGGAGGGATGTTTGGCTaGTGGTGTTGGGTTGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSGGMFG*WCWVGV Trigger: GACTCCAACCCAACACCATCAGCCAAACATCCCTCC...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAATGCTGGAAGGGCTGCTaGGCGGATGGAGGGATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSECWKGC*ADGGMF Trigger: AAACATCCCTCCATCCGCCCAGCAGCCCTTCCAGCA...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAACTGATGAGACTGGGGTaGAATGGCCTGGGGCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSELMRLG*NGLGLE Trigger: TTCCAGCCCCAGGCCATTCCACCCCAGTCTCATCAG...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | CTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTCTGATGAGACTGGGGTaGAATGGCCTGGGGCTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LELFLKTTKVSTSVLSFSLMRLG*NGLGLE Trigger: TTCCAGCCCCAGGCCATTCCACCCCAGTCTCATCAG...AGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CCA 90 bp | ATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGAATGCCTTGTCATGCCCTaGTACCACTTCATAGGAGAA | + |
|
Preference number: 4 (lower is better) Translates to: IEHYYMPLCSGKVGEWLECLVMP*YHFIGE Trigger: TTCTCCTATGAAGTGGTACCAGGGCATGACAAGGCA...TTCCAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR TCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAACTCGGGGGATGCTGTTaGGACAGCACAGGGATGATT | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSELGGCC*DSTGMI Trigger: AATCATCCCTGTGCTGTCTCAACAGCATCCCCCGAG...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 |
||
| CDS-3UTR TCA 90 bp | CTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGGAGGGATGTTTGGCTaGTGGTGTTGGGTTGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LELFLKTTKVSTSVLSFSGGMFG*WCWVGV Trigger: GACTCCAACCCAACACCATCAGCCAAACATCCCTCC...AGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR TCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAAGGAGGGATGTTTGGCTaGTGGTGTTGGGTTGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSEGGMFG*WCWVGV Trigger: GACTCCAACCCAACACCATCAGCCAAACATCCCTCC...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAACGGCTGCCTTATCATaGTCTGGTACCACTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: CVLELFLKTTKVSTSVLSTAALS*SGTTSK Trigger: CTTTGAAGTGGTACCAGAGCATGATAAGGCAGCCGT...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 |
||
| CDS-3UTR GCA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAAGCGGCTGCCTTATCATaGTCTGGTACCACTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ELFLKTTKVSTSVLSFSEAAALS*SGTTSK Trigger: CTTTGAAGTGGTACCAGAGCATGATAAGGCAGCCGC...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000112120.8 |
||
| CDS-3UTR GCA 90 bp | CTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTACGGCTGCCTTATCATaGTCTGGTACCACTTCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: LELFLKTTKVSTSVLSFSTAALS*SGTTSK Trigger: CTTTGAAGTGGTACCAGAGCATGATAAGGCAGCCGT...AGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 |
||
| CDS-3UTR CAA 90 bp | ATTGAACACTACTACATGCCATTATGTTCTGGGAAGGTAGGAGAGTGGTTGGAAGGGGGCCACGGGCTGTaGAGCTGGCACCACGGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: IEHYYMPLCSGKVGEWLEGGHGL*SWHHGK Trigger: CTTCCCGTGGTGCCAGCTCAACAGCCCGTGGCCCCC...TTCCAACCACTCTCCTACCTTCCCAGAACATAATGGCATGTAGTAGTGTTCAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066112.12 |
||
| CDS-3UTR CAA 90 bp | TGTGTTCTTGAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCAGGGGGCCACGGGCTGTaGAGCTGGCACCACGGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: CVLELFLKTTKVSTSVLSGGHGL*SWHHGK Trigger: CTTCCCGTGGTGCCAGCTCAACAGCCCGTGGCCCCC...TGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTCAAGAACACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||
| CDS-3UTR CAA 90 bp | GAGTTATTCCTAAAAACAACCAAAGTATCCACTTCGGTTCTCTCATTTTCTGAAGGGGGCCACGGGCTGTaGAGCTGGCACCACGGGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ELFLKTTKVSTSVLSFSEGGHGL*SWHHGK Trigger: CTTCCCGTGGTGCCAGCTCAACAGCCCGTGGCCCCC...TTCAGAAAATGAGAGAACCGAAGTGGATACTTTGGTTGTTTTTAGGAATAACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000112118.8 ENSMUST00000112119.8 ENSMUST00000112120.8 |
||