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Pregenerated sensors for AMD2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063953

Ensembl transcript IDs: ENSMUST00000080898.4

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGAGTAACCTGGAGAGGCCTCCTCCCTCTGGTCAGTCATTCATCTaGTCATCTGAAGGCCACGGTGAAAGGAAGACCAGAGACCAGCCG +
Preference number: 1 (lower is better)
Translates to: LSNLERPPPSGQSFI*SSEGHGERKTRDQP
Trigger: CGGCTGGTCTCTGGTCTTCCTTTCACCGTGGCCTTCAGATGATCAGATGAATGACTGACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR TCA 90 bp CAGAATATTGCGCCGTTCCATCCATTCATACATTCACTATTTGGCTaGGTAACCTGGAGAGGCCTCCTCCCTCTGGTCAGTCATTCATCT +
Preference number: 1 (lower is better)
Translates to: QNIAPFHPFIHSLFG*VTWRGLLPLVSHSS
Trigger: AGATGAATGACTGACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAGCCAAATAGTGAATGTATGAATGGATGGAACGGCGCAATATTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR GCA 90 bp TACCAAGAAAACAGGAGGGCAATAAATAGGGAGTTTAGTCCAGTTTaGTCTTTTCTGTTTAAGTCCCACCAACATGCCGACTCTTCAACG +
Preference number: 1 (lower is better)
Translates to: YQENRRAINREFSPV*SFLFKSHQHADSST
Trigger: CGTTGAAGAGTCGGCATGTTGGTGGGACTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTCCTGTTTTCTTGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR CCA 90 bp AATATAAGCCCACAGTGTAACAGTGTATTGCTTCATCAAAGGTGGTaGAAAAACTATAGGACTCTAAATGCAGGAGCAATTATTAAAACA +
Preference number: 1 (lower is better)
Translates to: NISPQCNSVLLHQRW*KNYRTLNAGAIIKT
Trigger: TGTTTTAATAATTGCTCCTGCATTTAGAGTCCTATAGTTTTTCCACCACCTTTGATGAAGCAATACACTGTTACACTGTGGGCTTATATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR-3UTR GCA 90 bp GGCCACGGTGAAAGGAAGACCAGAGACCAGCCGACGGCAGGACAAGTAGAAACCAGTGTAACAGTGTATTaGTTCATCAAAGGTGGTGGA +
Preference number: 2 (lower is better)
Translates to: GHGERKTRDQPTAGQVETSVTVY*FIKGGG
Trigger: TCCACCACCTTTGATGAAGCAATACACTGTTACACT...GGTTTCTACTTGTCCTGCCGTCGGCTGGTCTCTGGTCTTCCTTTCACCGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR-3UTR GCA 90 bp GGCCACGGTGAAAGGAAGACCAGAGACCAGCCGACGGCAGGACAAGTAGAAACCCTAGGACTACATTTCTaGTTTGACATAGTGGACATT +
Preference number: 2 (lower is better)
Translates to: GHGERKTRDQPTAGQVETLGLHF*FDIVDI
Trigger: AATGTCCACTATGTCAAAGCAGAAATGTAGTCCTAG...GGTTTCTACTTGTCCTGCCGTCGGCTGGTCTCTGGTCTTCCTTTCACCGTGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR CAA 90 bp TGCACAGCCTATCATTTCCATGGAGTTTTCTTTAATGGGTTCTCCTaGCTCATCGCCCTGGAGACTGTGAGTTCTTTTCATTTGATACAT +
Preference number: 2 (lower is better)
Translates to: CTAYHFHGVFFNGFS*LIALETVSSFHLIH
Trigger: ATGTATCAAATGAAAAGAACTCACAGTCTCCAGGGCGATGAGCAAGGAGAACCCATTAAAGAAAACTCCATGGAAATGATAGGCTGTGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR GCA 72 bp AACAGGAGGGCAATAAATAGGGAGTTTAGTCCAGTTTaGTCTTTTCTGTTTAAGTCCCACCAACATGCCGAC +
Preference number: 3 (lower is better)
Translates to: NRRAINREFSPV*SFLFKSHQHAD
Trigger: GTCGGCATGTTGGTGGGACTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTCCTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4
3UTR CAA 72 bp TATCATTTCCATGGAGTTTTCTTTAATGGGTTCTCCTaGCTCATCGCCCTGGAGACTGTGAGTTCTTTTCAT +
Preference number: 4 (lower is better)
Translates to: YHFHGVFFNGFS*LIALETVSSFH
Trigger: ATGAAAAGAACTCACAGTCTCCAGGGCGATGAGCAAGGAGAACCCATTAAAGAAAACTCCATGGAAATGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000080898.4