Pregenerated sensors for AMD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075232Ensembl transcript IDs: ENSMUST00000099945.6, ENSMUST00000238953.2, ENSMUST00000238969.2
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGAGTAACCTGGAGAGGCCTCCTCCCTCTGGTCAGTCATTCATCTaGTCATCTGAAGGCCACGGTGAAAGGAAGACCAGAGACCAGCTG | + |
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Preference number: 1 (lower is better) Translates to: LSNLERPPPSGQSFI*SSEGHGERKTRDQL Trigger: CAGCTGGTCTCTGGTCTTCCTTTCACCGTGGCCTTCAGATGATCAGATGAATGACTGACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR TCA 90 bp | CAGAATATTGCGCCGTTCCATCCATTCATACATTCACTATCTGGCTaGGTAACCTGGAGAGGCCTCCTCCCTCTGGTCAGTCATTCATCT | + |
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Preference number: 1 (lower is better) Translates to: QNIAPFHPFIHSLSG*VTWRGLLPLVSHSS Trigger: AGATGAATGACTGACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAGCCAGATAGTGAATGTATGAATGGATGGAACGGCGCAATATTCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR CCA 90 bp | GATTCAGAATATTGCGCCGTTCCATCCATTCATACATTCACTATCTaGCTGAGTAACCTGGAGAGGCCTCCTCCCTCTGGTCAGTCATTC | + |
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Preference number: 1 (lower is better) Translates to: DSEYCAVPSIHTFTI*LSNLERPPPSGQSF Trigger: GAATGACTGACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAGCCAGATAGTGAATGTATGAATGGATGGAACGGCGCAATATTCTGAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR GCA 90 bp | AGTGAGGGCATAGTAGGCACTCCATTAACGCTAATTAAGGTGCACTaGACAGCCTATCATTTCCATGGAGTTTTCTTTAATGGGTTCTCC | + |
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Preference number: 1 (lower is better) Translates to: SEGIVGTPLTLIKVH*TAYHFHGVFFNGFS Trigger: GGAGAACCCATTAAAGAAAACTCCATGGAAATGATAGGCTGTGCAGTGCACCTTAATTAGCGTTAATGGAGTGCCTACTATGCCCTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR GCA 90 bp | TACCAAGAAAACAGAAGGGCAATAAATAGGGAGTTTAGTCCAGTTTaGTCTTTTCTGTTTAAGTCCCACCAACATGCCGACTCTTCAACG | + |
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Preference number: 1 (lower is better) Translates to: YQENRRAINREFSPV*SFLFKSHQHADSST Trigger: CGTTGAAGAGTCGGCATGTTGGTGGGACTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTTCTGTTTTCTTGGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGGCCTCCTCCCTCTGGTCAGTCATTCATCTGATCATCTGAAGGCCACGGTGGTAAATAAAACCTGGTaGCAACGGCAGCACTTACTG | + |
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Preference number: 2 (lower is better) Translates to: RGLLPLVSHSSDHLKATVVNKTW*QRQHLL Trigger: CAGTAAGTGCTGCCGTTGCCACCAGGTTTTATTTAC...CACCGTGGCCTTCAGATGATCAGATGAATGACTGACCAGAGGGAGGAGGCCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | TCAGAATATTGCGCCGTTCCATCCATTCATACATTCACTATCTGGCTGAGTAACACGAGGTGGTGGTCATaGTCAGCATGGCCCTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: SEYCAVPSIHTFTIWLSNTRWWS*SAWPSG Trigger: TCCTGAGGGCCATGCTGACCATGACCACCACCTCGT...GTTACTCAGCCAGATAGTGAATGTATGAATGGATGGAACGGCGCAATATTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099945.6 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | AATTATAATATAAGCCCACAGTGTAACAGTGTATTGCTTCATCAAAGGTGGTGGACGAGGTGGTGGTCATaGTCAGCATGGCCCTCAGGA | + |
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Preference number: 2 (lower is better) Translates to: NYNISPQCNSVLLHQRWWTRWWS*SAWPSG Trigger: TCCTGAGGGCCATGCTGACCATGACCACCACCTCGT...CCACCACCTTTGATGAAGCAATACACTGTTACACTGTGGGCTTATATTATAATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099945.6 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | CGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCGCCGTTCCATCCATACATTCACTATCTaGCTGAGTAACCTGGAGAGG | + |
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Preference number: 2 (lower is better) Translates to: RPLFLVPLNRFRILRRSIHTFTI*LSNLER Trigger: CCTCTCCAGGTTACTCAGCCAGATAGTGAATGTATG...GATGGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | TTCTCCTTCGAATCAAAATCTCCTTTAGTAAATAAAACCTGGTGGCAACGGCAGCTTCATCAAAGGTGGTaGAAAAACTATAGGACTCTA | + |
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Preference number: 2 (lower is better) Translates to: FSFESKSPLVNKTWWQRQLHQRW*KNYRTL Trigger: TAGAGTCCTATAGTTTTTCCACCACCTTTGATGAAG...CTGCCGTTGCCACCAGGTTTTATTTACTAAAGGAGATTTTGATTCGAAGGAGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR TCA 90 bp | AACAGAAGGGCAATAAATAGGGAGTTTAGTCCAGTTTGCTCTTTTCTGTTTAAGACTACATTTCTGCTTTaGCATAGTGGACATTCCTAT | + |
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Preference number: 2 (lower is better) Translates to: NRRAINREFSPVCSFLFKTTFLL*HSGHSY Trigger: ATAGGAATGTCCACTATGTCAAAGCAGAAATGTAGT...CTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTTCTGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | CCGACTCTTCAACGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCTTCATCAAAGGTGGTaGAAAAACTATAGGACTCTA | + |
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Preference number: 2 (lower is better) Translates to: PTLQRPLFLVPLNRFRILLHQRW*KNYRTL Trigger: TAGAGTCCTATAGTTTTTCCACCACCTTTGATGAAG...CAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCGTTGAAGAGTCGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CCA 90 bp | CCGACTCTTCAACGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGTTGCTTCATCAAAGGTaGTGGAAAAACTATAGGACT | + |
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Preference number: 2 (lower is better) Translates to: PTLQRPLFLVPLNRFRILLLHQR*WKNYRT Trigger: AGTCCTATAGTTTTTCCACCACCTTTGATGAAGCAA...CAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCGTTGAAGAGTCGG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR CCA 72 bp | TATTGCGCCGTTCCATCCATTCATACATTCACTATCTaGCTGAGTAACCTGGAGAGGCCTCCTCCCTCTGGT | + |
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Preference number: 3 (lower is better) Translates to: YCAVPSIHTFTI*LSNLERPPPSG Trigger: ACCAGAGGGAGGAGGCCTCTCCAGGTTACTCAGCCAGATAGTGAATGTATGAATGGATGGAACGGCGCAATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CAA 90 bp | CATTTCCATGGAGTTTTCTTTAATGGGTTCTCCTTGCTCATCGCCCTGGAGACTCAGTGTAACAGTGTATaGCTTCATCAAAGGTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: HFHGVFFNGFSLLIALETQCNSV*LHQRWW Trigger: CCACCACCTTTGATGAAGCAATACACTGTTACACTG...AGTCTCCAGGGCGATGAGCAAGGAGAACCCATTAAAGAAAACTCCATGGAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CAA 90 bp | AAGTCCCACCAACATGCCGACTCTTCAACGCCCATTATTTCTAGTGCCATTAAACAGTGTAACAGTGTATaGCTTCATCAAAGGTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: KSHQHADSSTPIISSAIKQCNSV*LHQRWW Trigger: CCACCACCTTTGATGAAGCAATACACTGTTACACTG...TTTAATGGCACTAGAAATAATGGGCGTTGAAGAGTCGGCATGTTGGTGGGACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR GCA 72 bp | AACAGAAGGGCAATAAATAGGGAGTTTAGTCCAGTTTaGTCTTTTCTGTTTAAGTCCCACCAACATGCCGAC | + |
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Preference number: 3 (lower is better) Translates to: NRRAINREFSPV*SFLFKSHQHAD Trigger: GTCGGCATGTTGGTGGGACTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTTCTGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR CCA 72 bp | TCCTTCGAATCAAAATCTCCTTTAGTAAATAAAACCTaGTGGCAACGGCAGCACTTACTGAGGTCAGAATGC | + |
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Preference number: 3 (lower is better) Translates to: SFESKSPLVNKT*WQRQHLLRSEC Trigger: GCATTCTGACCTCAGTAAGTGCTGCCGTTGCCACCAGGTTTTATTTACTAAAGGAGATTTTGATTCGAAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR-3UTR CAA 90 bp | CCGACTCTTCAACGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCAGTGTAACAGTGTATaGCTTCATCAAAGGTGGTGG | + |
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Preference number: 3 (lower is better) Translates to: PTLQRPLFLVPLNRFRILQCNSV*LHQRWW Trigger: CCACCACCTTTGATGAAGCAATACACTGTTACACTG...CAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCGTTGAAGAGTCGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR GCA 72 bp | ATAGTAGGCACTCCATTAACGCTAATTAAGGTGCACTaGACAGCCTATCATTTCCATGGAGTTTTCTTTAAT | + |
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Preference number: 3 (lower is better) Translates to: IVGTPLTLIKVH*TAYHFHGVFFN Trigger: ATTAAAGAAAACTCCATGGAAATGATAGGCTGTGCAGTGCACCTTAATTAGCGTTAATGGAGTGCCTACTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR GCA 90 bp | GAAAGGAAGACCAGAGACCAGCTGACGGTAGGACAAGTAGAAACCAGATTCTCCTGGCTTGCGTCGGACTaGTGTCTGGAAAACCAGACC | + |
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Preference number: 4 (lower is better) Translates to: ERKTRDQLTVGQVETRFSWLASD*CLENQT Trigger: GGTCTGGTTTTCCAGACAGCAGTCCGACGCAAGCCA...GGAGAATCTGGTTTCTACTTGTCCTACCGTCAGCTGGTCTCTGGTCTTCCTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | GGCCACGGTGAAAGGAAGACCAGAGACCAGCTGACGGTAGGACAAGTAGAAACCATCCCATTCAGATCTTaGGATGGTACGAAGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: GHGERKTRDQLTVGQVETIPFRS*DGTKIP Trigger: GGGGATCTTCGTACCATCCCAAGATCTGAATGGGAT...GGTTTCTACTTGTCCTACCGTCAGCTGGTCTCTGGTCTTCCTTTCACCGTGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR GCA 90 bp | GCCTATCATTTCCATGGAGTTTTCTTTAATGGGTTCTCCTTGCTCATCGCCCTGTGGCTTGCGTCGGACTaGTGTCTGGAAAACCAGACC | + |
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Preference number: 4 (lower is better) Translates to: AYHFHGVFFNGFSLLIALWLASD*CLENQT Trigger: GGTCTGGTTTTCCAGACAGCAGTCCGACGCAAGCCA...CAGGGCGATGAGCAAGGAGAACCCATTAAAGAAAACTCCATGGAAATGATAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | AGAGGCCTCCTCCCTCTGGTCAGTCATTCATCTGATCATCTGAAGGCCACGGTGGATTACTCGGCTCTCTaGGAAATCCAAAGTATACAA | + |
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Preference number: 4 (lower is better) Translates to: RGLLPLVSHSSDHLKATVDYSAL*EIQSIQ Trigger: TTGTATACTTTGGATTTCCCAGAGAGCCGAGTAATC...CACCGTGGCCTTCAGATGATCAGATGAATGACTGACCAGAGGGAGGAGGCCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | CAACGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCGCCGTTCCACGAGGTGGTGGTCATaGTCAGCATGGCCCTCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QRPLFLVPLNRFRILRRSTRWWS*SAWPSG Trigger: TCCTGAGGGCCATGCTGACCATGACCACCACCTCGT...GGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCGTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238953.2 |
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| CDS-3UTR GCA 90 bp | CAACGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCGCCGTTCCTGGCTTGCGTCGGACTaGTGTCTGGAAAACCAGACC | + |
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Preference number: 4 (lower is better) Translates to: QRPLFLVPLNRFRILRRSWLASD*CLENQT Trigger: GGTCTGGTTTTCCAGACAGCAGTCCGACGCAAGCCA...GGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | ATCATTTCCATGGAGTTTTCTTTAATGGGTTCTCCTTGCTCATCGCCCTGGAGAATCCCATTCAGATCTTaGGATGGTACGAAGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: IISMEFSLMGSPCSSPWRIPFRS*DGTKIP Trigger: GGGGATCTTCGTACCATCCCAAGATCTGAATGGGAT...TCTCCAGGGCGATGAGCAAGGAGAACCCATTAAAGAAAACTCCATGGAAATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | CGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCGCCGTTCCATCATCCCATTCAGATCTTaGGATGGTACGAAGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: RPLFLVPLNRFRILRRSIIPFRS*DGTKIP Trigger: GGGGATCTTCGTACCATCCCAAGATCTGAATGGGAT...GATGGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CCA 90 bp | CGCCCATTATTTCTAGTGCCATTAAATAGATTCAGAATATTGCGCCGTTCCATCGATTACTCGGCTCTCTaGGAAATCCAAAGTATACAA | + |
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Preference number: 4 (lower is better) Translates to: RPLFLVPLNRFRILRRSIDYSAL*EIQSIQ Trigger: TTGTATACTTTGGATTTCCCAGAGAGCCGAGTAATC...GATGGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGGGCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| 3UTR CAA 72 bp | CCATTATTTCTAGTGCCATTAAATAGATTCAGAATATaGCGCCGTTCCATCCATTCATACATTCACTATCTG | + |
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Preference number: 4 (lower is better) Translates to: PLFLVPLNRFRI*RRSIHSYIHYL Trigger: CAGATAGTGAATGTATGAATGGATGGAACGGCGCAATATTCTGAATCTATTTAATGGCACTAGAAATAATGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CAA 90 bp | TATTGCGCCGTTCCATCCATTCATACATTCACTATCTGGCTGAGTAACCTGGAGCATCCCATTCAGATCTaGGGATGGTACGAAGATCCC | + |
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Preference number: 5 (lower is better) Translates to: YCAVPSIHTFTIWLSNLEHPIQI*GWYEDP Trigger: GGGATCTTCGTACCATCCCAAGATCTGAATGGGATG...CTCCAGGTTACTCAGCCAGATAGTGAATGTATGAATGGATGGAACGGCGCAATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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| CDS-3UTR CAA 90 bp | AACAGAAGGGCAATAAATAGGGAGTTTAGTCCAGTTTGCTCTTTTCTGTTTAAGCATCCCATTCAGATCTaGGGATGGTACGAAGATCCC | + |
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Preference number: 5 (lower is better) Translates to: NRRAINREFSPVCSFLFKHPIQI*GWYEDP Trigger: GGGATCTTCGTACCATCCCAAGATCTGAATGGGATG...CTTAAACAGAAAAGAGCAAACTGGACTAAACTCCCTATTTATTGCCCTTCTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099945.6 ENSMUST00000238953.2 ENSMUST00000238969.2 |
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