Pregenerated sensors for AMBP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028356Ensembl transcript IDs: ENSMUST00000030041.5, ENSMUST00000142901.2
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTaGGCTGTGACAAACAGTGGCTACCCTCTGGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: LVLFGSRSSKLD*AVTNSGYPLAC Trigger: GCAAGCCAGAGGGTAGCCACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTCTGTCGCCCCCTCCTaGAGCACCAGCGTGCTCACG | + |
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Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALSVAPS*STSVLT Trigger: CGTGAGCACGCTGGTGCTGCAGGAGGGGGCGACAGA...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CCA 90 bp | CTAGGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGGACCCCTCACTCTCTTaGGGCAGCACTGCCCGCCGG | + |
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Preference number: 4 (lower is better) Translates to: LGSDNLFYLGPDHLSWTADPSLS*GSTARR Trigger: CCGGCGGGCAGTGCTGCCCCAAGAGAGTGAGGGGTC...CGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTCCGGGCTCTGGCAATTaGTGTGGGCTCCACCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSPGSGN*CGLHLP Trigger: CGGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGG...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGGCTCGGCAGGGGCCTTaGACTATGGGGAGATTGCAG | + |
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Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALARQGP*TMGRLQ Trigger: CTGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGC...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTGATATCTGGCAGTGTTaGCGCAGGGTCAGCCCTCGA | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSDIWQC*RRVSPR Trigger: TCGAGGGCTGACCCTGCGTCAACACTGCCAGATATC...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTTCTGGTACGCCCCAGTaGTCTCCTCACAGACACCTC | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSSGTPQ*SPHRHL Trigger: GAGGTGTCTGTGAGGAGATCACTGGGGCGTACCAGA...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTCAGGGCCACATCCTTaGACTCCTGCAGAAGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALSGPHP*TPAEGC Trigger: ACAGCCTTCTGCAGGAGTTCAAGGATGTGGCCCTGA...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTATGCCCAGAGCTTTATaGAGGCTCGGCAGGGGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSMPRAL*RLGRGL Trigger: AAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCAT...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTAGGGGCCTTGGACTATaGGGAGATTGCAGGCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSRGLGL*GDCRPL Trigger: TAGCGGCCTGCAATCTCCCCATAGTCCAAGGCCCCT...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTACATCCTTGAACTCCTaGAGAAGGCTGTCCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSTSLNS*RRLSLS Trigger: GCTGAGGGACAGCCTTCTGCAGGAGTTCAAGGATGT...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGGAGTTCTCAGAGATaGCCACATTCAGGGCCACAT | + |
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Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALWSSQR*PHSGPH Trigger: ATGTGGCCCTGAATGTGGGCATCTCTGAGAACTCCA...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTTGTTGCCGTTGCCTTTaGAGCCCCCGTAGTGGAATT | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSCCRCL*SPRSGI Trigger: AATTCCACTACGGGGGCTGCAAAGGCAACGGCAACA...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACGGCCTTCTGAGTAATTaGGCTGGCAGGAGTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNGLLSN*AGRSLL Trigger: AAGAAGACTCCTGCCAGCTCAATTACTCAGAAGGCC...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACATGGTCCGACATGTCTaGAGACAGTCCTTCTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNMVRHV*RQSFSE Trigger: CTCTGAGAAGGACTGTCTGCAGACATGTCGGACCAT...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR TCA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACTCACTGAAGTTCTCCTaGACCTGGATATCTGGCAGT | + |
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Preference number: 4 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNSLKFS*TWISGS Trigger: ACTGCCAGATATCCAGGTTCAGGAGAACTTCAGTGA...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR GCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTTGTGCTGCATCAAATaGCCAGAGCTTTATGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALLCCIK*PELYEG Trigger: GCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAA...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CCA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGCATATTCGTCATAGTTaGTGTGGACCACATAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: GSDNLFYLGPDHLSWTALHIRHS*CGPHRI Trigger: AATCCTATGTGGTCCACACCAACTATGACGAATATG...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CCA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTAGGTTATGTTCCATTTaGATTTGTGGTAGAGGAACT | + |
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Preference number: 4 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSRLCSI*ICGRGT Trigger: AGTTCCTCTACCACAAATCCAAATGGAACATAACCT...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 90 bp | AGGGTCCCAGTTATTAGTGGCTCAGTCCCTGACCCCTCACTCTCTTaGGGCAGCACTGCCCGCCGGGCTCTGGCAATTGATGTGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RVPVISGSVPDPSLS*GSTARRALAIDVGS Trigger: GGAGCCCACATCAATTGCCAGAGCCCGGCGGGCAGTGCTGCCCCAAGAGAGTGAGGGGTCAGGGACTGAGCCACTAATAACTGGGACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 90 bp | CAGGGCCACATCCTTGAACTCCTGCAGAAGGCTGTCCCTCAGCTGTaGCTCCCGACCATAGAGCTTGGCAGTGATGGTGAGCCCGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: QGHILELLQKAVPQL*LPTIELGSDGEPVV Trigger: CACCACGGGCTCACCATCACTGCCAAGCTCTATGGTCGGGAGCCACAGCTGAGGGACAGCCTTCTGCAGGAGTTCAAGGATGTGGCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 90 bp | CATCGAGTACTGGTCATGCTGATCTCTGTTTCTGTCGCCCCCTCCTaGAGCACCAGCGTGCTCACGCTCATCTTGTCCTTAATGCGGCTC | + |
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Preference number: 5 (lower is better) Translates to: HRVLVMLISVSVAPS*STSVLTLILSLMRL Trigger: GAGCCGCATTAAGGACAAGATGAGCGTGAGCACGCTGGTGCTGCAGGAGGGGGCGACAGAAACAGAGATCAGCATGACCAGTACTCGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 90 bp | GCCCCCGTAGTGGAATTGGATGCACTTCCCTTGTGCTGCATCAAATaGCCAGAGCTTTATGAAGGCTCGGCAGGGGCCTTGGACTATGGG | + |
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Preference number: 5 (lower is better) Translates to: APVVELDALPLCCIK*PELYEGSAGALDYG Trigger: CCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGTGCATCCAATTCCACTACGGGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 90 bp | GCCTTTGCAGCCCCCGTAGTGGAATTGGATGCACTTCCCTTGTGCTaGATCAAATGCCCAGAGCTTTATGAAGGCTCGGCAGGGGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: AFAAPVVELDALPLC*IKCPELYEGSAGAL Trigger: CAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGTGCATCCAATTCCACTACGGGGGCTGCAAAGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 90 bp | GGTAGAGGAACTTTCCATCGATGTCCGTCTTCTGGTACGCCCCAGTaGTCTCCTCACAGACACCTCTCCGCCATCGAGTACTGGTCATGC | + |
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Preference number: 5 (lower is better) Translates to: GRGTFHRCPSSGTPQ*SPHRHLSAIEYWSC Trigger: GCATGACCAGTACTCGATGGCGGAGAGGTGTCTGTGAGGAGATCACTGGGGCGTACCAGAAGACGGACATCGATGGAAAGTTCCTCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 90 bp | ATTGGATGCACTTCCCTTGTGCTGCATCAAATGCCCAGAGCTTTATaGAGGCTCGGCAGGGGCCTTGGACTATGGGGAGATTGCAGGCCG | + |
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Preference number: 5 (lower is better) Translates to: IGCTSLVLHQMPRAL*RLGRGLGLWGDCRP Trigger: CGGCCTGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGTGCATCCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 90 bp | CCTTGGACTATGGGGAGATTGCAGGCCGCTATGGTCCGACATGTCTaGAGACAGTCCTTCTCAGAGATGAAGTTGTTGCCGTTGCCTAGG | + |
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Preference number: 5 (lower is better) Translates to: PWTMGRLQAAMVRHV*RQSFSEMKLLPLPR Trigger: CCTAGGCAACGGCAACAACTTCATCTCTGAGAAGGACTGTCTGCAGACATGTCGGACCATAGCGGCCTGCAATCTCCCCATAGTCCAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACGCCGGGCTCTGGCAATaGATGTGGGCTCCACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNAGLWQ*MWAPPP Trigger: GGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGGC...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 90 bp | ATCCCACCGCCAGGTTGTACCATTTTCCATAGATCCGGGACTCACTaGAGTTCTCCTGAACCTGGATATCTGGCAGTGTTGACGCAGGGT | + |
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Preference number: 5 (lower is better) Translates to: IPPPGCTIFHRSGTH*SSPEPGYLAVLTQG Trigger: ACCCTGCGTCAACACTGCCAGATATCCAGGTTCAGGAGAACTTCAGTGAGTCCCGGATCTATGGAAAATGGTACAACCTGGCGGTGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 90 bp | AGGCCGCTATGGTCCGACATGTCTGCAGACAGTCCTTCTCAGAGATaGAGTTGTTGCCGTTGCCTAGGCAACCCCCATATTGAAAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: RPLWSDMSADSPSQR*SCCRCLGNPHIERS Trigger: AGACCTTTCAATATGGGGGTTGCCTAGGCAACGGCAACAACTTCATCTCTGAGAAGGACTGTCTGCAGACATGTCGGACCATAGCGGCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | GGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGGGATATCTGGCAGTGTaGACGCAGGGTCAGCCCTCG | + |
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Preference number: 5 (lower is better) Translates to: GSDNLFYLGPDHLSWTALGYLAV*TQGQPS Trigger: CGAGGGCTGACCCTGCGTCAACACTGCCAGATATCC...CAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACGGCTCGGCAGGGGCCTaGGACTATGGGGAGATTGCA | + |
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Preference number: 5 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNGSAGA*DYGEIA Trigger: TGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGCC...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACAGTTGGACTATGGGGAGATaGCAGGCCGCTATGGTCCGA | + |
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Preference number: 5 (lower is better) Translates to: LVLFGSRSSKLDCAVTNSWTMGR*QAAMVR Trigger: TCGGACCATAGCGGCCTGCAATCTCCCCATAGTCCA...ACTGTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACTTCAGGGCCACATCCTaGAACTCCTGCAGAAGGCTG | + |
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Preference number: 5 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNFRATS*NSCRRL Trigger: CAGCCTTCTGCAGGAGTTCAAGGATGTGGCCCTGAA...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 90 bp | CATAGTTGGTGTGGACCACATAGGATTCCAAGGTTATGTTCCATTTaGATTTGTGGTAGAGGAACTTTCCATCGATGTCCGTCTTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: HSWCGPHRIPRLCSI*ICGRGTFHRCPSSG Trigger: ACCAGAAGACGGACATCGATGGAAAGTTCCTCTACCACAAATCCAAATGGAACATAACCTTGGAATCCTATGTGGTCCACACCAACTATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CTAGGAAGTGACAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGTGGTGGCTGGACTTCTaGGTAAGGAAAATGGCATAT | + |
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Preference number: 5 (lower is better) Translates to: LGSDNLFYLGPDHLSWTAWWLDF*VRKMAY Trigger: ATATGCCATTTTCCTTACCAAGAAGTCCAGCCACCA...CGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTGTCACTTCCTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS-3UTR CAA 90 bp | CAACTTGTTTTATTTGGGTCCAGATCATCTAAGCTGGACTGCGCTGTGACAAACCAGGAGTCTTCTTTCTaGAGGGTCCCAGTTATTAGT | + |
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Preference number: 5 (lower is better) Translates to: QLVLFGSRSSKLDCAVTNQESSF*RVPVIS Trigger: ACTAATAACTGGGACCCTCAAGAAAGAAGACTCCTG...GTTTGTCACAGCGCAGTCCAGCTTAGATGATCTGGACCCAAATAAAACAAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 72 bp | GGGGCAGCACTGCCCGCCGGGCTCTGGCAATTGATGTaGGCTCCACCTCCCGATCCCCAGGGACACATTCCC | + |
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Preference number: 6 (lower is better) Translates to: GAALPAGLWQLM*APPPDPQGHIP Trigger: GGGAATGTGTCCCTGGGGATCGGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGGCGGGCAGTGCTGCCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | CTCTTGGGGCAGCACTGCCCGCCGGGCTCTGGCAATTaGTGTGGGCTCCACCTCCCGATCCCCAGGGACACA | + |
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Preference number: 6 (lower is better) Translates to: LLGQHCPPGSGN*CGLHLPIPRDT Trigger: TGTGTCCCTGGGGATCGGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGGCGGGCAGTGCTGCCCCAAGAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 72 bp | CCTCACTCTCTTGGGGCAGCACTGCCCGCCGGGCTCTaGCAATTGATGTGGGCTCCACCTCCCGATCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: PHSLGAALPAGL*QLMWAPPPDPQ Trigger: CTGGGGATCGGGAGGTGGAGCCCACATCAATTGCCAGAGCCCGGCGGGCAGTGCTGCCCCAAGAGAGTGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CAA 90 bp | GTTTCTGTCGCCCCCTCCTGCAGCACCAGCGTGCTCACGCTCATCTaGTCCTTAATGCGGCTCAGCCACGGGCAGGTGGATCCCACCGCC | + |
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Preference number: 6 (lower is better) Translates to: VSVAPSCSTSVLTLI*SLMRLSHGQVDPTA Trigger: GGCGGTGGGATCCACCTGCCCGTGGCTGAGCCGCATTAAGGACAAGATGAGCGTGAGCACGCTGGTGCTGCAGGAGGGGGCGACAGAAAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 72 bp | GAGATGCCCACATTCAGGGCCACATCCTTGAACTCCTaGAGAAGGCTGTCCCTCAGCTGTGGCTCCCGACCA | + |
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Preference number: 6 (lower is better) Translates to: EMPTFRATSLNS*RRLSLSCGSRP Trigger: TGGTCGGGAGCCACAGCTGAGGGACAGCCTTCTGCAGGAGTTCAAGGATGTGGCCCTGAATGTGGGCATCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | CACAGACACCTCTCCGCCATCGAGTACTGGTCATGCTaGTCTCTGTTTCTGTCGCCCCCTCCTGCAGCACCA | + |
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Preference number: 6 (lower is better) Translates to: HRHLSAIEYWSC*SLFLSPPPAAP Trigger: TGGTGCTGCAGGAGGGGGCGACAGAAACAGAGATCAGCATGACCAGTACTCGATGGCGGAGAGGTGTCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 72 bp | AATGCCCAGAGCTTTATGAAGGCTCGGCAGGGGCCTTaGACTATGGGGAGATTGCAGGCCGCTATGGTCCGA | + |
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Preference number: 6 (lower is better) Translates to: NAQSFMKARQGP*TMGRLQAAMVR Trigger: TCGGACCATAGCGGCCTGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CAA 72 bp | AAATGCCCAGAGCTTTATGAAGGCTCGGCAGGGGCCTaGGACTATGGGGAGATTGCAGGCCGCTATGGTCCG | + |
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Preference number: 6 (lower is better) Translates to: KCPELYEGSAGA*DYGEIAGRYGP Trigger: CGGACCATAGCGGCCTGCAATCTCCCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | ACTGAAGTTCTCCTGAACCTGGATATCTGGCAGTGTTaGCGCAGGGTCAGCCCTCGAAGCGAGGCAGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: TEVLLNLDIWQC*RRVSPRSEAGS Trigger: ACTGCCTGCCTCGCTTCGAGGGCTGACCCTGCGTCAACACTGCCAGATATCCAGGTTCAGGAGAACTTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030041.5 ENSMUST00000142901.2 |
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| CDS GCA 72 bp | CTGGTCATGCTGATCTCTGTTTCTGTCGCCCCCTCCTaGAGCACCAGCGTGCTCACGCTCATCTTGTCCTTA | + |
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Preference number: 6 (lower is better) Translates to: LVMLISVSVAPS*STSVLTLILSL Trigger: TAAGGACAAGATGAGCGTGAGCACGCTGGTGCTGCAGGAGGGGGCGACAGAAACAGAGATCAGCATGACCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 72 bp | ATCCTTGAACTCCTGCAGAAGGCTGTCCCTCAGCTGTaGCTCCCGACCATAGAGCTTGGCAGTGATGGTGAG | + |
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Preference number: 6 (lower is better) Translates to: ILELLQKAVPQL*LPTIELGSDGE Trigger: CTCACCATCACTGCCAAGCTCTATGGTCGGGAGCCACAGCTGAGGGACAGCCTTCTGCAGGAGTTCAAGGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CCA 72 bp | AGGGGCCTTGGACTATGGGGAGATTGCAGGCCGCTATaGTCCGACATGTCTGCAGACAGTCCTTCTCAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RGLGLWGDCRPL*SDMSADSPSQR Trigger: TCTCTGAGAAGGACTGTCTGCAGACATGTCGGACCATAGCGGCCTGCAATCTCCCCATAGTCCAAGGCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | ACTTTCCATCGATGTCCGTCTTCTGGTACGCCCCAGTaGTCTCCTCACAGACACCTCTCCGCCATCGAGTAC | + |
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Preference number: 6 (lower is better) Translates to: TFHRCPSSGTPQ*SPHRHLSAIEY Trigger: GTACTCGATGGCGGAGAGGTGTCTGTGAGGAGATCACTGGGGCGTACCAGAAGACGGACATCGATGGAAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CAA 90 bp | AAAATGATGGAGTTCTCAGAGATGCCCACATTCAGGGCCACATCCTaGAACTCCTGCAGAAGGCTGTCCCTCAGCTGTGGCTCCCGACCA | + |
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Preference number: 6 (lower is better) Translates to: KMMEFSEMPTFRATS*NSCRRLSLSCGSRP Trigger: TGGTCGGGAGCCACAGCTGAGGGACAGCCTTCTGCAGGAGTTCAAGGATGTGGCCCTGAATGTGGGCATCTCTGAGAACTCCATCATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | ACTTCCCTTGTGCTGCATCAAATGCCCAGAGCTTTATaGAGGCTCGGCAGGGGCCTTGGACTATGGGGAGAT | + |
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Preference number: 6 (lower is better) Translates to: TSLVLHQMPRAL*RLGRGLGLWGD Trigger: ATCTCCCCATAGTCCAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 72 bp | ATGGGGAGATTGCAGGCCGCTATGGTCCGACATGTCTaGAGACAGTCCTTCTCAGAGATGAAGTTGTTGCCG | + |
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Preference number: 6 (lower is better) Translates to: MGRLQAAMVRHV*RQSFSEMKLLP Trigger: CGGCAACAACTTCATCTCTGAGAAGGACTGTCTGCAGACATGTCGGACCATAGCGGCCTGCAATCTCCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS GCA 72 bp | GTGGAATTGGATGCACTTCCCTTGTGCTGCATCAAATaGCCAGAGCTTTATGAAGGCTCGGCAGGGGCCTTG | + |
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Preference number: 6 (lower is better) Translates to: VELDALPLCCIK*PELYEGSAGAL Trigger: CAAGGCCCCTGCCGAGCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGTGCATCCAATTCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | TGGTCCGACATGTCTGCAGACAGTCCTTCTCAGAGATaGAGTTGTTGCCGTTGCCTAGGCAACCCCCATATT | + |
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Preference number: 6 (lower is better) Translates to: WSDMSADSPSQR*SCCRCLGNPHI Trigger: AATATGGGGGTTGCCTAGGCAACGGCAACAACTTCATCTCTGAGAAGGACTGTCTGCAGACATGTCGGACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS CAA 72 bp | TTTGCAGCCCCCGTAGTGGAATTGGATGCACTTCCCTaGTGCTGCATCAAATGCCCAGAGCTTTATGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: FAAPVVELDALP*CCIKCPELYEG Trigger: GCCTTCATAAAGCTCTGGGCATTTGATGCAGCACAAGGGAAGTGCATCCAATTCCACTACGGGGGCTGCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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| CDS TCA 72 bp | CCAGGTTGTACCATTTTCCATAGATCCGGGACTCACTaGAGTTCTCCTGAACCTGGATATCTGGCAGTGTTG | + |
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Preference number: 6 (lower is better) Translates to: PGCTIFHRSGTH*SSPEPGYLAVL Trigger: CAACACTGCCAGATATCCAGGTTCAGGAGAACTTCAGTGAGTCCCGGATCTATGGAAAATGGTACAACCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030041.5 ENSMUST00000142901.2 |
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| CDS GCA 72 bp | ATTCCTTCTCAGAGTAGAATTTGTTGCCGTTGCCTTTaGAGCCCCCGTAGTGGAATTGGATGCACTTCCCTT | + |
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Preference number: 6 (lower is better) Translates to: IPSQSRICCRCL*SPRSGIGCTSL Trigger: AAGGGAAGTGCATCCAATTCCACTACGGGGGCTGCAAAGGCAACGGCAACAAATTCTACTCTGAGAAGGAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030041.5 |
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