RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AMACR (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022244

Ensembl transcript IDs: ENSMUST00000070877.7

Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATGGAGGGAGCTCAGCAGGTCTGCACTGGAGACAGGACAGTCTACTaGGGGAAAGGCTTGCTGCAAGGTGATGGAGAACAGAGCACAGGG +
Preference number: 1 (lower is better)
Translates to: MEGAQQVCTGDRTVY*GKGLLQGDGEQSTG
Trigger: CCCTGTGCTCTGTTCTCCATCACCTTGCAGCAAGCCTTTCCCTCAGTAGACTGTCCTGTCTCCAGTGCAGACCTGCTGAGCTCCCTCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR GCA 90 bp AGGTCTGCACTGGAGACAGGACAGTCTACTGAGGGAAAGGCTTGCTaGAAGGTGATGGAGAACAGAGCACAGGGCTCCTCACCCATAGCA +
Preference number: 1 (lower is better)
Translates to: RSALETGQSTEGKAC*KVMENRAQGSSPIA
Trigger: TGCTATGGGTGAGGAGCCCTGTGCTCTGTTCTCCATCACCTTGCAGCAAGCCTTTCCCTCAGTAGACTGTCCTGTCTCCAGTGCAGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR GCA 90 bp AGCAGGTCTGCACTGGAGACAGGACAGTCTACTGAGGGAAAGGCTTaGTGCAAGGTGATGGAGAACAGAGCACAGGGCTCCTCACCCATA +
Preference number: 1 (lower is better)
Translates to: SRSALETGQSTEGKA*CKVMENRAQGSSPI
Trigger: TATGGGTGAGGAGCCCTGTGCTCTGTTCTCCATCACCTTGCAGCAAGCCTTTCCCTCAGTAGACTGTCCTGTCTCCAGTGCAGACCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 90 bp GGTTTCTATGGAAATGTGAACTCCAGCACTGGGCAGGGGAAACCATaGACCTCTGACCTGGCCCAGCCTGAAAAAGCCATTAGCATCTTT +
Preference number: 1 (lower is better)
Translates to: GFYGNVNSSTGQGKP*TSDLAQPEKAISIF
Trigger: AAAGATGCTAATGGCTTTTTCAGGCTGGGCCAGGTCAGAGGTTCATGGTTTCCCCTGCCCAGTGCTGGAGTTCACATTTCCATAGAAACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR GCA 90 bp ATGGCTGTCACTGGTGTGCAATTCAGTACGAAGTCTTCCGGGTATTaGGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTGTTT +
Preference number: 1 (lower is better)
Translates to: MAVTGVQFSTKSSGY*VFSYCLLYLLTYLF
Trigger: AAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGACTTCGTACTGAATTGCACACCAGTGACAGCCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 90 bp GTAAGGGCGCAATCGTTATCCTGTAACCAGCCTTTCGTTGGATCGTaGTTGGGATATTTGGATGACTTCATTGCTGTTCATCCACATTTC +
Preference number: 1 (lower is better)
Translates to: VRAQSLSCNQPFVGS*LGYLDDFIAVHPHF
Trigger: GAAATGTGGATGAACAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGGTTACAGGATAACGATTGCGCCCTTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR GCA 90 bp GTGCAATTCAGTACGAAGTCTTCCGGGTATTGCGTGTTCTCCTATTaGCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTTT +
Preference number: 1 (lower is better)
Translates to: VQFSTKSSGYCVFSY*LLYLLTYLFASSSF
Trigger: AAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGACTTCGTACTGAATTGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR GCA 90 bp ACTTGTTTGCTTCAAGTTCCTTTTCCTTGGGATTTTCGAGAGGGTAAGCAGGTGGGAGCTCAGCAGGTCTaGACTGGAGACAGGACAGTC +
Preference number: 2 (lower is better)
Translates to: TCLLQVPFPWDFREGKQVGAQQV*TGDRTV
Trigger: GACTGTCCTGTCTCCAGTGCAGACCTGCTGAGCTCC...CACCTGCTTACCCTCTCGAAAATCCCAAGGAAAAGGAACTTGAAGCAAACAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR CCA 90 bp TCCTATTGCCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTTTTCCGGCATCCCTCCCCAGTaGAGATGCAGCCTTCAGATT +
Preference number: 2 (lower is better)
Translates to: SYCLLYLLTYLFASSSFSGIPPQ*RCSLQI
Trigger: AATCTGAAGGCTGCATCTCCACTGGGGAGGGATGCC...GGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR TCA 90 bp AGCCTGAAAAAGCCATTAGCATCTTTTGAAGCTGTAAAGAGATTTCCCAGGATGCTTCACCAAGGGAACTaGAAGGCAGAAAGCTGCCAC +
Preference number: 2 (lower is better)
Translates to: SLKKPLASFEAVKRFPRMLHQGN*KAESCH
Trigger: GTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGAAG...CATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CAA 90 bp ATTGCGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTGTTaGCTTCAAGTTCCTTTTCCTTGGGATTTTCGAGAGGGTAAGCAG +
Preference number: 2 (lower is better)
Translates to: IACSPIASYTSLLTC*LQVPFPWDFREGKQ
Trigger: CTGCTTACCCTCTCGAAAATCCCAAGGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CAA 90 bp TGTGCAATTCAGTACGAAGTCTTCCGGGTATTGCGTGTTCTCCTATaGCCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTT +
Preference number: 2 (lower is better)
Translates to: CAIQYEVFRVLRVLL*PPIPPYLLVCFKFL
Trigger: AAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGACTTCGTACTGAATTGCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR CCA 90 bp TCACCAAGGGAACTGAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACACACTCGTTGGATCGTGATTaGGATATTTGGATGACTTCA +
Preference number: 2 (lower is better)
Translates to: SPRELKGRKLPQVTISTHSLDRD*DIWMTS
Trigger: TGAAGTCATCCAAATATCCCAATCACGATCCAACGA...GTGTGTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR CCA 90 bp GTCTTCCGGGTATTGCGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTAAGGGTTTTAATAAATaGATACACTTCACCAAGGGA +
Preference number: 2 (lower is better)
Translates to: VFRVLRVLLLPPIPPYLLKGFNK*IHFTKG
Trigger: TCCCTTGGTGAAGTGTATCCATTTATTAAAACCCTT...AAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp GCTCAGCAGGTCTGCACTGGAGACAGGACAGTCTACTaGGGGAAAGGCTTGCTGCAAGGTGATGGAGAACAG +
Preference number: 3 (lower is better)
Translates to: AQQVCTGDRTVY*GKGLLQGDGEQ
Trigger: CTGTTCTCCATCACCTTGCAGCAAGCCTTTCCCTCAGTAGACTGTCCTGTCTCCAGTGCAGACCTGCTGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp AGCAGGTGGAGACATAATCAGTACAGAAGCAGACCCTaGTGGAGGGAGCTCAGCAGGTCTGCACTGGAGACA +
Preference number: 3 (lower is better)
Translates to: SRWRHNQYRSRP*WRELSRSALET
Trigger: TGTCTCCAGTGCAGACCTGCTGAGCTCCCTCCATCAGGGTCTGCTTCTGTACTGATTATGTCTCCACCTGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp GGAAATGTGAACTCCAGCACTGGGCAGGGGAAACCATaGACCTCTGACCTGGCCCAGCCTGAAAAAGCCATT +
Preference number: 3 (lower is better)
Translates to: GNVNSSTGQGKP*TSDLAQPEKAI
Trigger: AATGGCTTTTTCAGGCTGGGCCAGGTCAGAGGTTCATGGTTTCCCCTGCCCAGTGCTGGAGTTCACATTTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CCA 72 bp CATTGCTGTTCATCCACATTTCCATACACACAATTGTaGGCATCCCTCCCCAGTGGAGATGCAGCCTTCAGA +
Preference number: 3 (lower is better)
Translates to: HCCSSTFPYTQL*ASLPSGDAAFR
Trigger: TCTGAAGGCTGCATCTCCACTGGGGAGGGATGCCCACAATTGTGTGTATGGAAATGTGGATGAACAGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp GACCTGGCCCAGCCTGAAAAAGCCATTAGCATCTTTTaGAGCTGTAAAGAGATTTCCCAGGATGGGAAGCTC +
Preference number: 3 (lower is better)
Translates to: DLAQPEKAISIF*SCKEISQDGKL
Trigger: GAGCTTCCCATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCTGGGCCAGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CCA 72 bp ATTTCCATACACACAATTGTGGGCATCCCTCCCCAGTaGAGATGCAGCCTTCAGATTCTCTTGAGCTATAAG +
Preference number: 3 (lower is better)
Translates to: ISIHTIVGIPPQ*RCSLQILLSYK
Trigger: CTTATAGCTCAAGAGAATCTGAAGGCTGCATCTCCACTGGGGAGGGATGCCCACAATTGTGTGTATGGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR GCA 72 bp AGTACGAAGTCTTCCGGGTATTGCGTGTTCTCCTATTaGCTCCTATACCTCCTTACTTACTTGTTTGCTTCA +
Preference number: 3 (lower is better)
Translates to: STKSSGYCVFSY*LLYLLTYLFAS
Trigger: TGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGACTTCGTACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CCA 72 bp CGTTATCCTGTAACCAGCCTTTCGTTGGATCGTGATTaGGATATTTGGATGACTTCATTGCTGTTCATCCAC +
Preference number: 3 (lower is better)
Translates to: RYPVTSLSLDRD*DIWMTSLLFIH
Trigger: GTGGATGAACAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGGTTACAGGATAACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR CAA 90 bp AGCCTGAAAAAGCCATTAGCATCTTTTGAAGCTGTAAAGAGATTTCCCAGGATGTTGCGTGTTCTCCTATaGCCTCCTATACCTCCTTAC +
Preference number: 3 (lower is better)
Translates to: SLKKPLASFEAVKRFPRMLRVLL*PPIPPY
Trigger: GTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAA...CATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp CCAGCCTTTCGTTGGATCGTGATTGGGATATTTGGATaGCTTCATTGCTGTTCATCCACATTTCCATACACA +
Preference number: 3 (lower is better)
Translates to: PAFRWIVIGIFG*LHCCSSTFPYT
Trigger: TGTGTATGGAAATGTGGATGAACAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR TCA 72 bp CAATCGTTATCCTGTAACCAGCCTTTCGTTGGATCGTaGTTGGGATATTTGGATGACTTCATTGCTGTTCAT +
Preference number: 3 (lower is better)
Translates to: QSLSCNQPFVGS*LGYLDDFIAVH
Trigger: ATGAACAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGGTTACAGGATAACGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR-3UTR CAA 90 bp AGCCTGAAAAAGCCATTAGCATCTTTTGAAGCTGTAAAGAGATTTCCCAGGATGTCCTTACTTACTTGTTaGCTTCAAGTTCCTTTTCCT +
Preference number: 3 (lower is better)
Translates to: SLKKPLASFEAVKRFPRMSLLTC*LQVPFP
Trigger: AGGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGA...CATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR GCA 90 bp GTTCATCCACATTTCCATACACACAATTGTGGGCATCCCTCCCCAGTGGAGATGGCCCGTTCTCTGTTGTaGTGGTGGTGGAGGGCCTCC +
Preference number: 4 (lower is better)
Translates to: VHPHFHTHNCGHPSPVEMARSLL*WWWRAS
Trigger: GGAGGCCCTCCACCACCAGCACAACAGAGAACGGGC...CATCTCCACTGGGGAGGGATGCCCACAATTGTGTGTATGGAAATGTGGATGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR TCA 90 bp GTCTTCCGGGTATTGCGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTCTCTGGCCAATCTGCTaGGCTCATCTGGGAGGGGAG +
Preference number: 4 (lower is better)
Translates to: VFRVLRVLLLPPIPPYLLLWPIC*AHLGGE
Trigger: CTCCCCTCCCAGATGAGCTCAGCAGATTGGCCAGAG...AAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR GCA 90 bp GTAACCAGCCTTTCGTTGGATCGTGATTGGGATATTTGGATGACTTCATTGCTGCGGGGGCTCGGGAGCTaGTCCCCATCAGTGATGAAG +
Preference number: 4 (lower is better)
Translates to: VTSLSLDRDWDIWMTSLLRGLGS*SPSVMK
Trigger: CTTCATCACTGATGGGGAGCAGCTCCCGAGCCCCCG...CAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGGTTAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR GCA 90 bp GAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACACACACACAAATTTTCCTTCTGGAAAGCAGAGGTaGAGGGCGGGGGCTCGGGAG +
Preference number: 4 (lower is better)
Translates to: ERQKAATSYYQYTHTNFPSGKQR*RAGARE
Trigger: CTCCCGAGCCCCCGCCCTGCACCTCTGCTTTCCAGA...AGGAAAATTTGTGTGTGTGTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp CACTTCACCAAGGGAACTGAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACGTCTCTGGCCCAAGCTaGAGTTTCTCCATGACACCG +
Preference number: 4 (lower is better)
Translates to: HFTKGTERQKAATSYYQYVSGPS*SFSMTP
Trigger: CGGTGTCATGGAGAAACTCCAGCTTGGGCCAGAGAC...GTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp GTCTTCCGGGTATTGCGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTTCTCTGTTGTGCTGGTaGTGGAGGGCCTCCTCAAAC +
Preference number: 4 (lower is better)
Translates to: VFRVLRVLLLPPIPPYLLSLLCW*WRASSN
Trigger: GTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGA...AAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CAA 72 bp CTTCATTGCTGTTCATCCACATTTCCATACACACAATaGTGGGCATCCCTCCCCAGTGGAGATGCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: LHCCSSTFPYTQ*WASLPSGDAAF
Trigger: GAAGGCTGCATCTCCACTGGGGAGGGATGCCCACAATTGTGTGTATGGAAATGTGGATGAACAGCAATGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
3UTR CAA 72 bp ATTCAAAGTCAAGACAAACAGAATCGAAACAAACCGTaGGGCGGGAGACAAGCAGGGTTGGGTGTTGTGGGG +
Preference number: 4 (lower is better)
Translates to: IQSQDKQNRNKP*GGRQAGLGVVG
Trigger: CCCCACAACACCCAACCCTGCTTGTCTCCCGCCCAACGGTTTGTTTCGATTCTGTTTGTCTTGACTTTGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR GCA 90 bp ATAAATGGATACACTTCACCAAGGGAACTGAAAGGCAGAAAGCTGCCACAAGTTCTCGGCCAGAGCGTGTaGGTTCAAAGAGAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: INGYTSPRELKGRKLPQVLGQSV*VQREPA
Trigger: TGCTGGCTCTCTTTGAACGCACACGCTCTGGCCGAG...AACTTGTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGAAGTGTATCCATTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp TCCTATTGCCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTTTTCCGGACGGCAGGAGTTCTaGAAAGCAGAGGTGCAGGGC +
Preference number: 4 (lower is better)
Translates to: SYCLLYLLTYLFASSSFSGRQEF*KAEVQG
Trigger: GCCCTGCACCTCTGCTTTCCAGAACTCCTGCCGTCC...GGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR TCA 90 bp GTCTTCCGGGTATTGCGTGTTCTCCTATTGCCTCCTATACCTCCTTACTTACTTTCAGCCTGGCATAGATaGGCTTTGGATTGTCCTGCA +
Preference number: 4 (lower is better)
Translates to: VFRVLRVLLLPPIPPYLLSAWHR*ALDCPA
Trigger: TGCAGGACAATCCAAAGCTCATCTATGCCAGGCTGA...AAGTAAGTAAGGAGGTATAGGAGGCAATAGGAGAACACGCAATACCCGGAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp AGCCTGAAAAAGCCATTAGCATCTTTTGAAGCTGTAAAGAGATTTCCCAGGATGCTGTTGTGCTGGTGGTaGAGGGCCTCCTCAAACGTC +
Preference number: 4 (lower is better)
Translates to: SLKKPLASFEAVKRFPRMLLCWW*RASSNV
Trigger: GACGTTTGAGGAGGCCCTCCACCACCAGCACAACAG...CATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp TCCTATTGCCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTTTTCCCGTTCTCTGTTGTGCTaGTGGTGGAGGGCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SYCLLYLLTYLFASSSFSRSLLC*WWRASS
Trigger: TGAGGAGGCCCTCCACCACCAGCACAACAGAGAACG...GGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp AGCCTGAAAAAGCCATTAGCATCTTTTGAAGCTGTAAAGAGATTTCCCAGGATGGTTTCCACAGACCCATaGGCTGGGTTTTCCACAGGA +
Preference number: 4 (lower is better)
Translates to: SLKKPLASFEAVKRFPRMVSTDP*AGFSTG
Trigger: TCCTGTGGAAAACCCAGCCCATGGGTCTGTGGAAAC...CATCCTGGGAAATCTCTTTACAGCTTCAAAAGATGCTAATGGCTTTTTCAGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR TCA 90 bp CTATCAGTACACACACACAAATTTTCCTCAATCAGAGGCTCTGATAAGCAGCGTTTCAACGATTCTATCTaGGTGCAGCTGAAGGATCTC +
Preference number: 4 (lower is better)
Translates to: LSVHTHKFSSIRGSDKQRFNDSI*VQLKDL
Trigger: GAGATCCTTCAGCTGCACTCAGATAGAATCGTTGAA...ACGCTGCTTATCAGAGCCTCTGATTGAGGAAAATTTGTGTGTGTGTACTGATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR GCA 90 bp GTAACCAGCCTTTCGTTGGATCGTGATTGGGATATTTGGATGACTTCATTGCTGTCCTTTAAGCAGCAGTaGATAGAACTGGGGTTCTAT +
Preference number: 4 (lower is better)
Translates to: VTSLSLDRDWDIWMTSLLSFKQQ*IELGFY
Trigger: ATAGAACCCCAGTTCTATGCACTGCTGCTTAAAGGA...CAGCAATGAAGTCATCCAAATATCCCAATCACGATCCAACGAAAGGCTGGTTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CCA 90 bp AGTTACTATCAGTACACACACACAAATTTTCCTCAATCAGAGGCTCTGATAAGCGTCCCGTCAAAGATCTaGCACCATTCTGCCTTAGTC +
Preference number: 4 (lower is better)
Translates to: SYYQYTHTNFPQSEALISVPSKI*HHSALV
Trigger: GACTAAGGCAGAATGGTGCCAGATCTTTGACGGGAC...GCTTATCAGAGCCTCTGATTGAGGAAAATTTGTGTGTGTGTACTGATAGTAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR TCA 90 bp TCCTATTGCCTCCTATACCTCCTTACTTACTTGTTTGCTTCAAGTTCCTTTTCCATAAAGCCAAATAGTTaGTGTCATGGCCAGCTACTT +
Preference number: 4 (lower is better)
Translates to: SYCLLYLLTYLFASSSFSIKPNS*CHGQLL
Trigger: AAGTAGCTGGCCATGACATCAACTATTTGGCTTTAT...GGAAAAGGAACTTGAAGCAAACAAGTAAGTAAGGAGGTATAGGAGGCAATAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 90 bp CCAGCGCTAGCGAGCGCTTGCCTCGGGCCAGAAAATTCTCGCCCGTaGAGCCCAGCCGGTTCACGCGCACCACCTCGGCGCCGAAGTCCG +
Preference number: 5 (lower is better)
Translates to: PALASACLGPENSRP*SPAGSRAPPRRRSP
Trigger: CGGACTTCGGCGCCGAGGTGGTGCGCGTGAACCGGCTGGGCTCCACGGGCGAGAATTTTCTGGCCCGAGGCAAGCGCTCGCTAGCGCTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp AACACGTCCGCGCGTGCGCACATGCGCCGCAACACCGTGACTCCCTaGGAGCGCTTCAGGTCCAGCGCTAGCGAGCGCTTGCCTCGGGCC +
Preference number: 5 (lower is better)
Translates to: NTSARAHMRRNTVTP*ERFRSSASERLPRA
Trigger: GGCCCGAGGCAAGCGCTCGCTAGCGCTGGACCTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGCGGACGTGTT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp GCTCCAGCAACACGTCCGCGCGTGCGCACATGCGCCGCAACACCGTaGCTCCCTGAGAGCGCTTCAGGTCCAGCGCTAGCGAGCGCTTGC +
Preference number: 5 (lower is better)
Translates to: APATRPRVRTCAATP*LPESASGPALASAC
Trigger: GCAAGCGCTCGCTAGCGCTGGACCTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGCGGACGTGTTGCTGGAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 90 bp CTCCATGACACCGCAGCGGAAGGGCTCCAGCAACACGTCCGCGCGTaGGCACATGCGCCGCAACACCGTGACTCCCTGAGAGCGCTTCAG +
Preference number: 5 (lower is better)
Translates to: LHDTAAEGLQQHVRA*AHAPQHRDSLRALQ
Trigger: CTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGCGGACGTGTTGCTGGAGCCCTTCCGCTGCGGTGTCATGGAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 90 bp GGGAGCTGCTCCCCATCAGTGATGAAGGAGGCCCGTTCTCTGTTGTaGTGGTGGTGGAGGGCCTCCTCAAACGTCAGCACTGGGGTCACA +
Preference number: 5 (lower is better)
Translates to: GSCSPSVMKEARSLL*WWWRASSNVSTGVT
Trigger: TGTGACCCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGATGGGGAGCAGCTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 90 bp TCCCCATCAGTGATGAAGGAGGCCCGTTCTCTGTTGTGCTGGTGGTaGAGGGCCTCCTCAAACGTCAGCACTGGGGTCACACACGCATCT +
Preference number: 5 (lower is better)
Translates to: SPSVMKEARSLLCWW*RASSNVSTGVTHAS
Trigger: AGATGCGTGTGTGACCCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGATGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 90 bp TTCTCTGTTGTGCTGGTGGTGGAGGGCCTCCTCAAACGTCAGCACTaGGGTCACACACGCATCTGTCCCGTCAAAGATCTGGCACCATTC +
Preference number: 5 (lower is better)
Translates to: FSVVLVVEGLLKRQH*GHTRICPVKDLAPF
Trigger: GAATGGTGCCAGATCTTTGACGGGACAGATGCGTGTGTGACCCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CAA 90 bp CACTTCACCAAGGGAACTGAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACGAGGCCCGTTCTCTGTaGTGCTGGTGGTGGAGGGCC +
Preference number: 5 (lower is better)
Translates to: HFTKGTERQKAATSYYQYEARSL*CWWWRA
Trigger: GGCCCTCCACCACCAGCACAACAGAGAACGGGCCTC...GTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGAAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp GGAAAGAACTTAAGTATGCAGTCCCTTCCACCATGCTTGAATCGATaGCCTGCCCTCGGCCAGAGCGTGTGCGTTCAAAGAGAGCCAGCA +
Preference number: 5 (lower is better)
Translates to: GKNLSMQSLPPCLNR*PALGQSVCVQREPA
Trigger: TGCTGGCTCTCTTTGAACGCACACGCTCTGGCCGAGGGCAGGTCATCGATTCAAGCATGGTGGAAGGGACTGCATACTTAAGTTCTTTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp TGGAGAAAATTCCCGATTGGCCAAATCCGCTCAGCCTGGCATAGATaGGCTTTGGATTGTCCTGCAGTAGAGTCTCTGGCCCAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: WRKFPIGQIRSAWHR*ALDCPAVESLAQAG
Trigger: TCCAGCTTGGGCCAGAGACTCTACTGCAGGACAATCCAAAGCTCATCTATGCCAGGCTGAGCGGATTTGGCCAATCGGGAATTTTCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp TGCAAACACATCTGCAAATTTCTTCTTCATCTCTGGCCAATCTGCTaGGCTCATCTGGGAGGGGAGTTCCTCAGACTCGAGTCCAAGTCC +
Preference number: 5 (lower is better)
Translates to: CKHICKFLLHLWPIC*AHLGGEFLRLESKS
Trigger: GGACTTGGACTCGAGTCTGAGGAACTCCCCTCCCAGATGAGCTCAGCAGATTGGCCAGAGATGAAGAAGAAATTTGCAGATGTGTTTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CAA 90 bp TCACCAAGGGAACTGAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACACACCTGCCGTCTTGTAGGTaGTGTAGAAAGGTGCACCGC +
Preference number: 5 (lower is better)
Translates to: SPRELKGRKLPQVTISTHLPSCR*CRKVHR
Trigger: GCGGTGCACCTTTCTACACAACCTACAAGACGGCAG...GTGTGTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTCAGTTCCCTTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS-3UTR CAA 90 bp GAAAGGCAGAAAGCTGCCACAAGTTACTATCAGTACACACACACAAATTTTCCTACAGAAGGGTCCCTTTaGGCAGATGGGACGGCAGGA +
Preference number: 5 (lower is better)
Translates to: ERQKAATSYYQYTHTNFPTEGSL*ADGTAG
Trigger: TCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGT...AGGAAAATTTGTGTGTGTGTACTGATAGTAACTTGTGGCAGCTTTCTGCCTTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 90 bp CGCTTCTGCCAATCTTTGACAGAACGCCTGATAAAGCCAAATAGTTaGTGTCATGGCCAGCTACTTTGGAGAAAATTCCCGATTGGCCAA +
Preference number: 5 (lower is better)
Translates to: RFCQSLTERLIKPNS*CHGQLLWRKFPIGQ
Trigger: TTGGCCAATCGGGAATTTTCTCCAAAGTAGCTGGCCATGACATCAACTATTTGGCTTTATCAGGCGTTCTGTCAAAGATTGGCAGAAGCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 72 bp GCGCGTGCGCACATGCGCCGCAACACCGTGACTCCCTaGGAGCGCTTCAGGTCCAGCGCTAGCGAGCGCTTG +
Preference number: 6 (lower is better)
Translates to: ARAHMRRNTVTP*ERFRSSASERL
Trigger: CAAGCGCTCGCTAGCGCTGGACCTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 72 bp ACACGTCCGCGCGTGCGCACATGCGCCGCAACACCGTaGCTCCCTGAGAGCGCTTCAGGTCCAGCGCTAGCG +
Preference number: 6 (lower is better)
Translates to: TRPRVRTCAATP*LPESASGPALA
Trigger: CGCTAGCGCTGGACCTGAAGCGCTCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGCGGACGTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 72 bp ACCGCAGCGGAAGGGCTCCAGCAACACGTCCGCGCGTaGGCACATGCGCCGCAACACCGTGACTCCCTGAGA +
Preference number: 6 (lower is better)
Translates to: TAAEGLQQHVRA*AHAPQHRDSLR
Trigger: TCTCAGGGAGTCACGGTGTTGCGGCGCATGTGCGCACGCGCGGACGTGTTGCTGGAGCCCTTCCGCTGCGGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 72 bp CCTGAGAGCGCTTCAGGTCCAGCGCTAGCGAGCGCTTaGCTCGGGCCAGAAAATTCTCGCCCGTGGAGCCCA +
Preference number: 6 (lower is better)
Translates to: PESASGPALASA*LGPENSRPWSP
Trigger: TGGGCTCCACGGGCGAGAATTTTCTGGCCCGAGGCAAGCGCTCGCTAGCGCTGGACCTGAAGCGCTCTCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp AAGGGTCCCTTTTGGCAGATGGGACGGCAGGAGTTCTaGAAAGCAGAGGTGCAGGGCGGGGGCTCGGGAGCT +
Preference number: 6 (lower is better)
Translates to: KGPFWQMGRQEF*KAEVQGGGSGA
Trigger: AGCTCCCGAGCCCCCGCCCTGCACCTCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp GTGCTGGTGGTGGAGGGCCTCCTCAAACGTCAGCACTaGGGTCACACACGCATCTGTCCCGTCAAAGATCTG +
Preference number: 6 (lower is better)
Translates to: VLVVEGLLKRQH*GHTRICPVKDL
Trigger: CAGATCTTTGACGGGACAGATGCGTGTGTGACCCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp TCAGTGATGAAGGAGGCCCGTTCTCTGTTGTGCTGGTaGTGGAGGGCCTCCTCAAACGTCAGCACTGGGGTC +
Preference number: 6 (lower is better)
Translates to: SVMKEARSLLCW*WRASSNVSTGV
Trigger: GACCCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp CCATCAGTGATGAAGGAGGCCCGTTCTCTGTTGTGCTaGTGGTGGAGGGCCTCCTCAAACGTCAGCACTGGG +
Preference number: 6 (lower is better)
Translates to: PSVMKEARSLLC*WWRASSNVSTG
Trigger: CCCAGTGCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGATGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp GGTGTGCTCCCCTACAGAAGGGTCCCTTTTGGCAGATaGGACGGCAGGAGTTCTGGAAAGCAGAGGTGCAGG +
Preference number: 6 (lower is better)
Translates to: GVLPYRRVPFGR*DGRSSGKQRCR
Trigger: CCTGCACCTCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGTAGGGGAGCACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CAA 72 bp TGCTCCCCATCAGTGATGAAGGAGGCCCGTTCTCTGTaGTGCTGGTGGTGGAGGGCCTCCTCAAACGTCAGC +
Preference number: 6 (lower is better)
Translates to: CSPSVMKEARSL*CWWWRASSNVS
Trigger: GCTGACGTTTGAGGAGGCCCTCCACCACCAGCACAACAGAGAACGGGCCTCCTTCATCACTGATGGGGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CAA 90 bp TCTCTAAGCACTTCTACGGTGTGCTCCCCTACAGAAGGGTCCCTTTaGGCAGATGGGACGGCAGGAGTTCTGGAAAGCAGAGGTGCAGGG +
Preference number: 6 (lower is better)
Translates to: SLSTSTVCSPTEGSL*ADGTAGVLESRGAG
Trigger: CCCTGCACCTCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGTAGGGGAGCACACCGTAGAAGTGCTTAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 72 bp GGGTTCTATGGCACCTACAGCCATGAACTCCCCGTCTaGCGTCTTGTAGGTTGTGTAGAAAGGTGCACCGCC +
Preference number: 6 (lower is better)
Translates to: GFYGTYSHELPV*RLVGCVERCTA
Trigger: GGCGGTGCACCTTTCTACACAACCTACAAGACGGCAGACGGGGAGTTCATGGCTGTAGGTGCCATAGAACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CCA 72 bp CTTCTACGGTGTGCTCCCCTACAGAAGGGTCCCTTTTaGCAGATGGGACGGCAGGAGTTCTGGAAAGCAGAG +
Preference number: 6 (lower is better)
Translates to: LLRCAPLQKGPF*QMGRQEFWKAE
Trigger: CTCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGTAGGGGAGCACACCGTAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CAA 72 bp ACTTCTACGGTGTGCTCCCCTACAGAAGGGTCCCTTTaGGCAGATGGGACGGCAGGAGTTCTGGAAAGCAGA +
Preference number: 6 (lower is better)
Translates to: TSTVCSPTEGSL*ADGTAGVLESR
Trigger: TCTGCTTTCCAGAACTCCTGCCGTCCCATCTGCCAAAAGGGACCCTTCTGTAGGGGAGCACACCGTAGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 72 bp TTCCCGATTGGCCAAATCCGCTCAGCCTGGCATAGATaGGCTTTGGATTGTCCTGCAGTAGAGTCTCTGGCC +
Preference number: 6 (lower is better)
Translates to: FPIGQIRSAWHR*ALDCPAVESLA
Trigger: GGCCAGAGACTCTACTGCAGGACAATCCAAAGCTCATCTATGCCAGGCTGAGCGGATTTGGCCAATCGGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 72 bp GTGCATAGAACTGGGGTTCTATGGCACCTACAGCCATaGACTCCCCGTCTGCCGTCTTGTAGGTTGTGTAGA +
Preference number: 6 (lower is better)
Translates to: VHRTGVLWHLQP*TPRLPSCRLCR
Trigger: TCTACACAACCTACAAGACGGCAGACGGGGAGTTCATGGCTGTAGGTGCCATAGAACCCCAGTTCTATGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 72 bp GGAGATTCAGCGGTGGGTAGGGGTTCTCACCGCTTCTaGCAATCTTTGACAGAACGCCTGATAAAGCCAAAT +
Preference number: 6 (lower is better)
Translates to: GDSAVGRGSHRF*QSLTERLIKPN
Trigger: ATTTGGCTTTATCAGGCGTTCTGTCAAAGATTGGCAGAAGCGGTGAGAACCCCTACCCACCGCTGAATCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS GCA 72 bp TTCCTCAGACTCGAGTCCAAGTCCTTTAAGCAGCAGTaGATAGAACTGGGGTTCTATGGCACCTACAGCCAT +
Preference number: 6 (lower is better)
Translates to: FLRLESKSFKQQ*IELGFYGTYSH
Trigger: ATGGCTGTAGGTGCCATAGAACCCCAGTTCTATGCACTGCTGCTTAAAGGACTTGGACTCGAGTCTGAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CAA 72 bp GATGTCATGGCCAGCTACTTTGGAGAAAATTCCCGATaGGCCAAATCCGCTCAGCCTGGCATAGATGAGCTT +
Preference number: 6 (lower is better)
Translates to: DVMASYFGENSR*AKSAQPGIDEL
Trigger: AAGCTCATCTATGCCAGGCTGAGCGGATTTGGCCAATCGGGAATTTTCTCCAAAGTAGCTGGCCATGACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS CAA 90 bp CAAATAGTTGATGTCATGGCCAGCTACTTTGGAGAAAATTCCCGATaGGCCAAATCCGCTCAGCCTGGCATAGATGAGCTTTGGATTGTC +
Preference number: 6 (lower is better)
Translates to: QIVDVMASYFGENSR*AKSAQPGIDELWIV
Trigger: GACAATCCAAAGCTCATCTATGCCAGGCTGAGCGGATTTGGCCAATCGGGAATTTTCTCCAAAGTAGCTGGCCATGACATCAACTATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7
CDS TCA 72 bp CAATCTTTGACAGAACGCCTGATAAAGCCAAATAGTTaGTGTCATGGCCAGCTACTTTGGAGAAAATTCCCG +
Preference number: 6 (lower is better)
Translates to: QSLTERLIKPNS*CHGQLLWRKFP
Trigger: CGGGAATTTTCTCCAAAGTAGCTGGCCATGACATCAACTATTTGGCTTTATCAGGCGTTCTGTCAAAGATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070877.7