RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALYREF2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060244

Ensembl transcript IDs: ENSMUST00000081527.2

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCATACCCCTTCCCTGGCTaGCGCGGCCACCAAAGCCTC +
Preference number: 4 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASYPFPG*RGHQSL
Trigger: GAGGCTTTGGTGGCCGCGGCAGCCAGGGAAGGGGTA...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCAGGGACGCCCTTGTACTaGTTCATAGCCTTCAGGGCA +
Preference number: 4 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASGTPLY*FIAFRA
Trigger: TGCCCTGAAGGCTATGAAGCAGTACAAGGGCGTCCC...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR TCA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCACTGTGGATCGATCTGTaGCGTGACAAGCTGGATGTC +
Preference number: 4 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASLWIDL*RDKLDV
Trigger: GACATCCAGCTTGTCACGTCACAGATCGATCCACAG...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCAGCAGAAAGCTGCTGCTaGTTTGAGTTCCTGCCAGTG +
Preference number: 4 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASAESCC*FEFLPV
Trigger: CACTGGCAGGAACTCAAAGCAGCAGCAGCTTTCTGC...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCATCTGTTTCCGCTTTGTaGAGGTCTTCGCTGTGGATC +
Preference number: 4 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASSVSAL*RSSLWI
Trigger: GATCCACAGCGAAGACCTGCACAAAGCGGAAACAGA...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp AAAACCAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGGCTGGTGTCCCTCCTTaGATTGTAAGCATCCAGCTG +
Preference number: 4 (lower is better)
Translates to: KTKFTIVCTVQLPTLPLRAGVPP*IVSIQL
Trigger: CAGCTGGATGCTTACAATGCAAGGAGGGACACCAGC...CCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTGGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR CCA 90 bp TTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTCAGTCATGTGACGTGACAAGCTaGATGTCCATAGGGCGGCCA +
Preference number: 4 (lower is better)
Translates to: LHDGAENETHFFMHASQSCDVTS*MSIGRP
Trigger: TGGCCGCCCTATGGACATCCAGCTTGTCACGTCACA...TGACTGACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR TCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTAAGCTGCTGCTGCTTTaGGTTCCTGCCAGTGCCTCT +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASKLLLL*VPASAS
Trigger: AGAGGCACTGGCAGGAACTCAAAGCAGCAGCAGCTT...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTGCTGCTTTGAGTTCCTaGCAGTGCCTCTACCCCTTC +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASAALSS*QCLYPF
Trigger: GAAGGGGTAGAGGCACTGGCAGGAACTCAAAGCAGC...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTCTGTCGAATAGGTCGTaGTGCCACTTGTCCGGAAGT +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASLSNRS*CHLSGS
Trigger: ACTTCCGGACAAGTGGCAGCACGACCTATTCGACAG...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTAGCCTTCAGGGCATCTaGCCTCCGTTCAAAGTGTAC +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASSLQGI*PPFKVY
Trigger: GTACACTTTGAACGGAGGGCAGATGCCCTGAAGGCT...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTTGCGTCCAACTCCTCTaGAGAAAGCTGCTGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASCVQLL*RKLLLL
Trigger: AAGCAGCAGCAGCTTTCTGCAGAGGAGTTGGACGCA...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR GCA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTTCTGCAGAAAGCTGCTaGTGCTTTGAGTTCCTGCCA +
Preference number: 4 (lower is better)
Translates to: LFLHDGAENETHFFMHASSAESC*CFEFLP
Trigger: TGGCAGGAACTCAAAGCAGCAGCAGCTTTCTGCAGA...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS GCA 90 bp GTCTCCACGCCTTCCCCACCCCCGCAGCCGCTGTCGAATAGGTCGTaGTGCCACTTGTCCGGAAGTGGTTTCGGTCTACTGTACGGTGCC +
Preference number: 5 (lower is better)
Translates to: VSTPSPPPQPLSNRS*CHLSGSGFGLLYGA
Trigger: GGCACCGTACAGTAGACCGAAACCACTTCCGGACAAGTGGCAGCACGACCTATTCGACAGCGGCTGCGGGGGTGGGGAAGGCGTGGAGAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS GCA 90 bp GGCTGCCGCGGCCACCAAAGCCTCCAGAGCCACGGCTCCTTGTCATaGCGCCTCTGTTTCCGCTTTGTGCAGGTCTTCGCTGTGGATCGA +
Preference number: 5 (lower is better)
Translates to: GCRGHQSLQSHGSLS*RLCFRFVQVFAVDR
Trigger: TCGATCCACAGCGAAGACCTGCACAAAGCGGAAACAGAGGCGGCATGACAAGGAGCCGTGGCTCTGGAGGCTTTGGTGGCCGCGGCAGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS CCA 90 bp CTTTGTGCAGGTCTTCGCTGTGGATCGATCTGTGACGTGACAAGCTaGATGTCCATAGGGCGGCCATCCAAAGGGACGCCCTTGTACTGC +
Preference number: 5 (lower is better)
Translates to: LCAGLRCGSICDVTS*MSIGRPSKGTPLYC
Trigger: GCAGTACAAGGGCGTCCCTTTGGATGGCCGCCCTATGGACATCCAGCTTGTCACGTCACAGATCGATCCACAGCGAAGACCTGCACAAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR CAA 90 bp CAAATTCACCATTGTCTGCACAGTCCAGTTGCCTACCCTCCCTCTAAGGCATCAAGGTCGTGCTGCCACTaGTCCGGAAGTGGTTTCGGT +
Preference number: 5 (lower is better)
Translates to: QIHHCLHSPVAYPPSKASRSCCH*SGSGFG
Trigger: ACCGAAACCACTTCCGGACAAGTGGCAGCACGACCT...TGATGCCTTAGAGGGAGGGTAGGCAACTGGACTGTGCAGACAATGGTGAATTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS-3UTR CAA 90 bp TTATTCTTACATGATGGAGCTGAGAATGAAACCCACTTCTTCATGCATGCTAGTAAAGCTGCTGCTGCTTaGAGTTCCTGCCAGTGCCTC +
Preference number: 5 (lower is better)
Translates to: LFLHDGAENETHFFMHASKAAAA*SSCQCL
Trigger: GAGGCACTGGCAGGAACTCAAAGCAGCAGCAGCTTT...ACTAGCATGCATGAAGAAGTGGGTTTCATTCTCAGCTCCATCATGTAAGAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS CAA 90 bp CCTTCCCCACCCCCGCAGCCGCTGTCGAATAGGTCGTGCTGCCACTaGTCCGGAAGTGGTTTCGGTCTACTGTACGGTGCCGGCCGGTTC +
Preference number: 6 (lower is better)
Translates to: PSPPPQPLSNRSCCH*SGSGFGLLYGAGRF
Trigger: GAACCGGCCGGCACCGTACAGTAGACCGAAACCACTTCCGGACAAGTGGCAGCACGACCTATTCGACAGCGGCTGCGGGGGTGGGGAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS GCA 72 bp CCTTCCCCACCCCCGCAGCCGCTGTCGAATAGGTCGTaGTGCCACTTGTCCGGAAGTGGTTTCGGTCTACTG +
Preference number: 6 (lower is better)
Translates to: PSPPPQPLSNRS*CHLSGSGFGLL
Trigger: CAGTAGACCGAAACCACTTCCGGACAAGTGGCAGCACGACCTATTCGACAGCGGCTGCGGGGGTGGGGAAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS CAA 72 bp CCCCCGCAGCCGCTGTCGAATAGGTCGTGCTGCCACTaGTCCGGAAGTGGTTTCGGTCTACTGTACGGTGCC +
Preference number: 6 (lower is better)
Translates to: PPQPLSNRSCCH*SGSGFGLLYGA
Trigger: GGCACCGTACAGTAGACCGAAACCACTTCCGGACAAGTGGCAGCACGACCTATTCGACAGCGGCTGCGGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS GCA 72 bp GGCCACCAAAGCCTCCAGAGCCACGGCTCCTTGTCATaGCGCCTCTGTTTCCGCTTTGTGCAGGTCTTCGCT +
Preference number: 6 (lower is better)
Translates to: GHQSLQSHGSLS*RLCFRFVQVFA
Trigger: AGCGAAGACCTGCACAAAGCGGAAACAGAGGCGGCATGACAAGGAGCCGTGGCTCTGGAGGCTTTGGTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS CCA 72 bp GGTCTTCGCTGTGGATCGATCTGTGACGTGACAAGCTaGATGTCCATAGGGCGGCCATCCAAAGGGACGCCC +
Preference number: 6 (lower is better)
Translates to: GLRCGSICDVTS*MSIGRPSKGTP
Trigger: GGGCGTCCCTTTGGATGGCCGCCCTATGGACATCCAGCTTGTCACGTCACAGATCGATCCACAGCGAAGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS CCA 72 bp TTCCTCCTAGGCCCGCCGCCTCGATTCACCCGGCGCTaGTTACGGTTCAGCTTAATGATGTCGTCCAAAGAC +
Preference number: 6 (lower is better)
Translates to: FLLGPPPRFTRR*LRFSLMMSSKD
Trigger: GTCTTTGGACGACATCATTAAGCTGAACCGTAACCAGCGCCGGGTGAATCGAGGCGGCGGGCCTAGGAGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2
CDS GCA 72 bp GCTGGTGTCCCTCCTTGCATTGTAAGCATCCAGCTGTaGGTCCAACTCCTCTGCAGAAAGCTGCTGCTGCTT +
Preference number: 6 (lower is better)
Translates to: AGVPPCIVSIQL*VQLLCRKLLLL
Trigger: AAGCAGCAGCAGCTTTCTGCAGAGGAGTTGGACGCACAGCTGGATGCTTACAATGCAAGGAGGGACACCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000081527.2