RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALPK1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028028

Ensembl transcript IDs: ENSMUST00000029662.12, ENSMUST00000159720.2, ENSMUST00000198955.5

Found 380 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATaGTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTG +
Preference number: 1 (lower is better)
Translates to: SDQNHPLAQSINMSI*SACLEGDRSDARLL
Trigger: CAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR CCA 90 bp CATAACCAACCTACTACACAACAACAAAACAAACCGAAACCACAATaGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCAT +
Preference number: 1 (lower is better)
Translates to: HNQPTTQQQNKPKPQ*LNDSSLFSAEVCIH
Trigger: ATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAGTAGGTTGGTTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR-3UTR GCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCAATATGCTCTGCATaGCTGGAAGGAGACAGATCT +
Preference number: 2 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSICSA*LEGDRS
Trigger: AGATCTGTCTCCTTCCAGGCATGCAGAGCATATTGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTATCAATATGTCAATATaGTCTGCATGCCTGGAAGGA +
Preference number: 2 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSINMSI*SACLEG
Trigger: TCCTTCCAGGCATGCAGAGCATATTGACATATTGAT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR GCA 72 bp TTGGCCCAATCAATCAATATGTCAATATGCTCTGCATaGCTGGAAGGAGACAGATCTGATGCTAGGCTCTTG +
Preference number: 3 (lower is better)
Translates to: LAQSINMSICSA*LEGDRSDARLL
Trigger: CAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR GCA 72 bp AATCATCCGTTGGCCCAATCAATCAATATGTCAATATaGTCTGCATGCCTGGAAGGAGACAGATCTGATGCT +
Preference number: 3 (lower is better)
Translates to: NHPLAQSINMSI*SACLEGDRSDA
Trigger: AGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR TCA 72 bp CTGAAATCGACACTTGTGATTCCCCTCATAAGTCAGTaGCCAGAATCATCCGTTGGCCCAATCAATCAATAT +
Preference number: 3 (lower is better)
Translates to: LKSTLVIPLISQ*PESSVGPINQY
Trigger: ATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATCACAAGTGTCGATTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR CCA 72 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTaGCCCAATCAATCAATATGTCAATATGCTCTGCAT +
Preference number: 3 (lower is better)
Translates to: DSPHKSVTRIIR*PNQSICQYALH
Trigger: ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
3UTR TCA 72 bp GAGGTTTTAAATTCACAAAGAGCTCTCAAGTTAACATaGAAGCAGCAACAGTATCAGCTTTTACAGGTAATG +
Preference number: 3 (lower is better)
Translates to: EVLNSQRALKLT*KQQQYQLLQVM
Trigger: CATTACCTGTAAAAGCTGATACTGTTGCTGCTTTCATGTTAACTTGAGAGCTCTTTGTGAATTTAAAACCTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGCCGCCAGTAACTGCTaGAGCCCGGCGCCAATCACA +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPAASNC*SPAPIT
Trigger: TGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAAGGCCGCCAGTAACTaGTGCAGCCCGGCGCCAATC +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPKAASN*CSPAPI
Trigger: GATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCTCGGGCTTGTCGGATaGCCACCTGCGGGGCGATGG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRLGLVG*PPAGRW
Trigger: CCATCGCCCCGCAGGTGGTCATCCGACAAGCCCGAG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCTCCTCATCCACCGTTaGGGCATCAGGGTCGACAGT +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPLLIHR*GIRVDS
Trigger: ACTGTCGACCCTGATGCCTCAACGGTGGATGAGGAG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCTGCGCCTCCACAGGATaGTCTTCTTGGCCAGACCCT +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPCASTG*SSWPDP
Trigger: AGGGTCTGGCCAAGAAGAGCATCCTGTGGAGGCGCA...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGCATCTGTCTCCCCATaGAGTCTGGAGTGCACCGTG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPASVSP*SLECTV
Trigger: CACGGTGCACTCCAGACTCCATGGGGAGACAGATGC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAGGCCTTCTCTGTCCTaGCTTGTGGGGGAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPRPSLS*LVGEVL
Trigger: CAGCACTTCCCCCACAAGCCAGGACAGAGAAGGCCT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCTTGTGGGGGAAGTGCTaGAGGTGTAGAGCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPLWGKC*RCRACP
Trigger: TGGGCAAGCTCTACACCTTCAGCACTTCCCCCACAA...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCAAGGATCTCTTGACTaGTCTGTCCTGCCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPQGSLD*SVLPAR
Trigger: CCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTCTCGGGCTTGTCGGATaGCCACCTGCGGGGCGATGG +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSLGLVG*PPAGRW
Trigger: CCATCGCCCCGCAGGTGGTCATCCGACAAGCCCGAG...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGCCGCTCCACATCAGTaGAGTGGTGCCGGAGCCCCT +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVAAPHQ*SGAGAP
Trigger: AGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGC...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGAAGGCCGCCAGTAACTaGTGCAGCCCGGCGCCAATC +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRKAASN*CSPAPI
Trigger: GATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTT...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATACCACCTGCGGGGCGATaGGCGTTGCAGGCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIPPAGR*ALQASA
Trigger: AGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGG...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCCACCTGCGGGGCGATaGGCGTTGCAGGCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVPPAGR*ALQASA
Trigger: AGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGCTCGCCATCTTTCTTaGTCAGGAGGCCAATCTCAA +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPARHLS*SGGQSQ
Trigger: TTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTACAGTTTCCCTGAGTTaGCGGAGACTCGGGCTTGTC +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSTVSLS*RRLGLV
Trigger: GACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGGGAAGAGCTGAGCCCTaGCAGTCTGCCCCAAGAACA +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRGRAEP*QSAPRT
Trigger: TGTTCTTGGGGCAGACTGTCAGGGCTCAGCTCTTCC...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCATCCCAGGGCTACCTaGGAGGGTGATAGTCCATCG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRHPRAT*EGDSPS
Trigger: CGATGGACTATCACCCTCTCAGGTAGCCCTGGGATG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTAAGCCTTTGGCGACCTaGAGGAGTTTTCCGGAGACG +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSKPLAT*RSFPET
Trigger: CGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCGGGGCGATGGGCGTTaGAGGCTTCAGCTTGTGCAA +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRGDGR*RLQLVQ
Trigger: TTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCGGCACTGAAGGCAGCTaGCAGCTTGCAGGCTTCCGA +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCGTEGS*QLAGFR
Trigger: TCGGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCC...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCGCGTAGACATTGAATaGCTGCCTTCTAAACATCCC +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPRVDIE*LPSKHP
Trigger: GGGATGTTTAGAAGGCAGCCATTCAATGTCTACGCG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGTCCACATCAGTGAAGTaGTGCCGGAGCCCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRSTSVK*CRSPFL
Trigger: GAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGA...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCATCCCAGGGCTACCTaGGAGGGTGATAGTCCATCG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVHPRAT*EGDSPS
Trigger: CGATGGACTATCACCCTCTCAGGTAGCCCTGGGATG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCTCCTCATCCACCGTTaGGGCATCAGGGTCGACAGT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPLLIHR*GIRVDS
Trigger: ACTGTCGACCCTGATGCCTCAACGGTGGATGAGGAG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTGCCGCTCCACATCAGTaGAGTGGTGCCGGAGCCCCT +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCAAPHQ*SGAGAP
Trigger: AGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGC...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGCAGGCTTCAGCTTGTaGAAGCCTTTGGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIAGFSL*KPLATC
Trigger: GCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGGCACTGAAGGCAGCTaGCAGCTTGCAGGCTTCCGA +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSGTEGS*QLAGFR
Trigger: TCGGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCC...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTTGCGCCTCCACAGGATaGTCTTCTTGGCCAGACCCT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPCASTG*SSWPDP
Trigger: AGGGTCTGGCCAAGAAGAGCATCCTGTGGAGGCGCA...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGTATGCCCAGTGATGTaGAAATGCCCTTCTTATCTG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPVCPVM*KCPSYL
Trigger: CAGATAAGAAGGGCATTTCCACATCACTGGGCATAC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTAGGCCTTCTCTGTCCTaGCTTGTGGGGGAAGTGCTG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVRPSLS*LVGEVL
Trigger: CAGCACTTCCCCCACAAGCCAGGACAGAGAAGGCCT...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCGGAATGCCTTGGAATaGGTCCAGCTTCTCCCCCTT +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRRNALE*VQLLPL
Trigger: AAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTGCTGTTTCTCCTTCTaGGTCGACCGAAGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCCCFSF*VDRRGG
Trigger: GCCCCCTCTTCGGTCGACCCAGAAGGAGAAACAGCA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATCCACATCAGTGAAGTaGTGCCGGAGCCCCTTCCTC +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSISTSVK*CRSPFL
Trigger: GAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGA...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTTGTGGGGGAAGTGCTaGAGGTGTAGAGCTTGCCCA +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLWGKC*RCRACP
Trigger: TGGGCAAGCTCTACACCTTCAGCACTTCCCCCACAA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAAATACCTCACACACTaGAGTATGGTGCTGGGAATA +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPKYLTH*SMVLGI
Trigger: TATTCCCAGCACCATACTTCAGTGTGTGAGGTATTT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTGTATTCTCCAGTCTCTaGAGCAGCCAATCATGCCTC +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSVFSSL*SSQSCL
Trigger: GAGGCATGATTGGCTGCTTCAGAGACTGGAGAATAC...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCATGGCTTGTTTGTATTaGCACTTTTCAGGCACGAAG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPMACLY*HFSGTK
Trigger: CTTCGTGCCTGAAAAGTGGCAATACAAACAAGCCAT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAAAGCCTTTGGCGACCTaGAGGAGTTTTCCGGAGACG +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIKPLAT*RSFPET
Trigger: CGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCAGGCTTCAGCTTGTaGAAGCCTTTGGCGACCTGC +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSAGFSL*KPLATC
Trigger: GCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGC...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTAGCTGGAGTTTTGGCTaGTCTTCAGCATGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSSWSFG*SSACSQ
Trigger: TTGGGAGCATGCTGAAGAGCAGCCAAAACTCCAGCT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGAAGCTCTGCACCGCTaGTCCTCACTCTTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIEALHR*SSLLSS
Trigger: AGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCTTC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCGGAATGCCTTGGAATaGGTCCAGCTTCTCCCCCTT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRNALE*VQLLPL
Trigger: AAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTGCTTCTGTTCCTCTTaGGCTCCTCAGACGCTGCCT +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCCFCSS*APQTLP
Trigger: AGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATCAGGGTCGACAGTCTaGTCTCTGACTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSISGSTV*SLTEQP
Trigger: TGGCTGCTCAGTCAGAGACCAGACTGTCGACCCTGA...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCAAGGATCTCTTGACTaGTCTGTCCTGCCAGCGAGG +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPQGSLD*SVLPAR
Trigger: CCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTACAGTTTCCCTGAGTTaGCGGAGACTCGGGCTTGTC +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSTVSLS*RRLGLV
Trigger: GACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGCAGAATCTGCCCTCTaGTCTGTATGCAGACCGACT +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVAESAL*SVCRPT
Trigger: AGTCGGTCTGCATACAGATCAGAGGGCAGATTCTGC...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGAGAGACATGATTTCCTaGGACAGGCCTTCTCTGTCC +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRRDMIS*DRPSLS
Trigger: GGACAGAGAAGGCCTGTCTCAGGAAATCATGTCTCT...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTGATCCAGCACTTGCTTaGACTCATGCAGTATCGAAG +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSDPALA*THAVSK
Trigger: CTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATC...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCCACTTCATTTCCTCTaGCTCCTGGATCAGGGTCCT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPPLHFL*LLDQGP
Trigger: AGGACCCTGATCCAGGAGGCAGAGGAAATGAAGTGG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTCGGGGCGATGGGCGTTaGAGGCTTCAGCTTGTGCAA +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCRGDGR*RLQLVQ
Trigger: TTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCG...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCACATGCCTAGCTTCTaGAGAATCTGCCCTCTGATC +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRHMPSF*RICPLI
Trigger: GATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTAGATGTCTGCCAGTATaGCCAGTGATGTGGAAATGC +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSRCLPV*PVMWKC
Trigger: GCATTTCCACATCACTGGGCATACTGGCAGACATCT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTAGGCAGCTGCCAGCTTaGAGGCTTCCGAGGCTGACA +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCRQLPA*RLPRLT
Trigger: TGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCT...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATAGGCAGCTGCCAGCTTaGAGGCTTCCGAGGCTGACA +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYRQLPA*RLPRLT
Trigger: TGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAGCAACCATAGTATCTaGGGTGTTTGTTTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPSNHSI*GVCFCL
Trigger: AAGACAGAAACAAACACCGCAGATACTATGGTTGCT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGAAGAAGCTGTACTCCTaGTGTCTTGGGAACTCACCC +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRKKLYS*CLGNSP
Trigger: GGGTGAGTTCCCAAGACAGCAGGAGTACAGCTTCTT...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTGCTGTGCTGTCATCTaGCGCTCCACATCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVCCAVI*RSTSVK
Trigger: CTTCACTGATGTGGAGCGGCAGATGACAGCACAGCA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGCTTGTGCAAGCCTTTaGCGACCTGCAGGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIACASL*RPAGVF
Trigger: GAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGTTTCAAGAATTTGTTaGAAATCCACGTGTCCATGC +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPVSRIC*KSTCPC
Trigger: GCATGGACACGTGGATTTCCAACAAATTCTTGAAAC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCAGACTCGGAATGCCTTaGAATGGGTCCAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCRLGMP*NGSSFS
Trigger: GGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTACAGGATGCTCTTCTTaGCCAGACCCTTTCCTTACT +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSTGCSS*PDPFLT
Trigger: AGTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTTGCTTCTGTTCCTCTTaGGCTCCTCAGACGCTGCCT +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSCFCSS*APQTLP
Trigger: AGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCA...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGTGCTGTCAAGCATTTaGCCCTCCTCATCCACCGTT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPVLSSI*PSSSTV
Trigger: AACGGTGGATGAGGAGGGCCAAATGCTTGACAGCAC...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGTCCCTCCATTGCTGTaGTTTGGTGGCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSVPPLL*FGGSVS
Trigger: TGAGACTGAGCCACCAAATCACAGCAATGGAGGGAC...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGAAGGAACTTCTGCTTaGGTTCAGCAGAGACCAGGA +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPEGTSA*VQQRPG
Trigger: TCCTGGTCTCTGCTGAACTCAAGCAGAAGTTCCTTC...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGAAGGAACTTCTGCTTaGGTTCAGCAGAGACCAGGA +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVEGTSA*VQQRPG
Trigger: TCCTGGTCTCTGCTGAACTCAAGCAGAAGTTCCTTC...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCGTATTCTCCAGTCTCTaGAGCAGCCAATCATGCCTC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCVFSSL*SSQSCL
Trigger: GAGGCATGATTGGCTGCTTCAGAGACTGGAGAATAC...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCTTTGTACTCATTTTTaGCTGCTTTGGTGTTATTGG +
Preference number: 4 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPLCTHF*LLWCYW
Trigger: CCAATAACACCAAAGCAGTCAAAAATGAGTACAAAG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGGATCCAGCACTTGCTTaGACTCATGCAGTATCGAAG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRDPALA*THAVSK
Trigger: CTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATC...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTATGACAACAAACATGTaGCACGGATATTCACAGCCG +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSMTTNM*HGYSQP
Trigger: CGGCTGTGAATATCCGTGGCACATGTTTGTTGTCAT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCTCTGTAGACACATCTaGCGTTTCCAACAAGAGACG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRLCRHI*RFQQET
Trigger: CGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTGTATGCCCAGTGATGTaGAAATGCCCTTCTTATCTG +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSVCPVM*KCPSYL
Trigger: CAGATAAGAAGGGCATTTCCACATCACTGGGCATAC...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAGACTCGGAATGCCTTaGAATGGGTCCAGCTTCTCC +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSRLGMP*NGSSFS
Trigger: GGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATTGCTGTTTCTCCTTCTaGGTCGACCGAAGAGGGGGC +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYCCFSF*VDRRGG
Trigger: GCCCCCTCTTCGGTCGACCCAGAAGGAGAAACAGCA...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGCTTCTGCAGAATCTaGCCTCTGATCTGTATGCAG +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPSFCRI*PLICMQ
Trigger: CTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGATGTCTGCCAGTATaGCCAGTGATGTGGAAATGC +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRCLPV*PVMWKC
Trigger: GCATTTCCACATCACTGGGCATACTGGCAGACATCT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGTTGGCTTCACACAGATaGACACTTTTCATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRLASHR*TLFIPG
Trigger: TCCGGGAATGAAAAGTGTGCATCTGTGTGAAGCCAA...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTTGTGTCTCTCTGGTTaGGTTTGCTGTTCCCACAAG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLCLSG*VCCSHK
Trigger: CTTGTGGGAACAGCAAACGCAACCAGAGAGACACAA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAAGAAGCTGTACTCCTaGTGTCTTGGGAACTCACCC +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHKKLYS*CLGNSP
Trigger: GGGTGAGTTCCCAAGACAGCAGGAGTACAGCTTCTT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGACAAATACACAGCTCTaGTGCTTCTGTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRTNTQL*CFCSSW
Trigger: CCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGT...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCGTCTGTGCTTTCTaGTGTTTCTCCTTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCIVCAF*CFSFWV
Trigger: GACCCAGAAGGAGAAACAGCAGAAAGCACAGACGAT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGAAGCTCTGCACCGCTaGTCCTCACTCTTGTCCTCT +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYEALHR*SSLLSS
Trigger: AGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCTTC...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGAGGCTGACAACAAATaGTGGTCAAACTCCTTGAGC +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPEADNK*WSNSLS
Trigger: GCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTC...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCTCGCCATCTTTCTTaGTCAGGAGGCCAATCTCAA +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHARHLS*SGGQSQ
Trigger: TTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGC...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTACACTTGAAACTCTCTaGGACATAAGAGCAAGCATC +
Preference number: 4 (lower is better)
Translates to: ICSACLEGDRSDARLLKSTLETL*DIRASI
Trigger: GATGCTTGCTCTTATGTCCCAGAGAGTTTCAAGTGT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTCCATTGCTGTGATTTaGTGGCTCAGTCTCAGTCTC +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVSIAVI*WLSLSL
Trigger: GAGACTGAGACTGAGCCACCAAATCACAGCAATGGA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTCCATTGCTGTGATTTaGTGGCTCAGTCTCAGTCTC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCSIAVI*WLSLSL
Trigger: GAGACTGAGACTGAGCCACCAAATCACAGCAATGGA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCGCGTAGACATTGAATaGCTGCCTTCTAAACATCCC +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRVDIE*LPSKHP
Trigger: GGGATGTTTAGAAGGCAGCCATTCAATGTCTACGCG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCAGGGTCGACAGTCTaGTCTCTGACTGAGCAGCCA +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSGSTV*SLTEQP
Trigger: TGGCTGCTCAGTCAGAGACCAGACTGTCGACCCTGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATATGAGCTGGAGTTTTaGCTGCTCTTCAGCATGCTC +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIYELEF*LLFSML
Trigger: GAGCATGCTGAAGAGCAGCCAAAACTCCAGCTCATA...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGGATCTAAACCACACTTaGAACTCTCTGGGACATAAG +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRDLNHT*NSLGHK
Trigger: CTTATGTCCCAGAGAGTTTCAAGTGTGGTTTAGATC...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTGTCCCTCCATTGCTGTaGTTTGGTGGCTCAGTCTCA +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCVPPLL*FGGSVS
Trigger: TGAGACTGAGCCACCAAATCACAGCAATGGAGGGAC...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAGCTTCTGCAGAATCTaGCCTCTGATCTGTATGCAG +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSSFCRI*PLICMQ
Trigger: CTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTTGGCTTCACACAGATaGACACTTTTCATTCCCGGA +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLASHR*TLFIPG
Trigger: TCCGGGAATGAAAAGTGTGCATCTGTGTGAAGCCAA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAATACACAGCTCTGCTaGTTCTGTTCCTCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSNTQLC*FCSSWA
Trigger: AGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAATACACAGCTCTGCTaGTTCTGTTCCTCTTGGGCT +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHNTQLC*FCSSWA
Trigger: AGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTACAAATACACAGCTCTaGTGCTTCTGTTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVTNTQL*CFCSSW
Trigger: CCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGT...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGATAGTGGACCCAAAATaGATTTCTCTGCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRIVDPK*ISLLAL
Trigger: AAGGGCAAGCAGAGAAATGCATTTTGGGTCCACTAT...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATTGCTGTGCTGTCATCTaGCGCTCCACATCAGTGAAG +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYCCAVI*RSTSVK
Trigger: CTTCACTGATGTGGAGCGGCAGATGACAGCACAGCA...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTGCTTGTGCAAGCCTTTaGCGACCTGCAGGAGTTTTC +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCACASL*RPAGVF
Trigger: GAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGC...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTAATGCCCTTCTTATCTaGCTGAGGGAGTGTCAGATA +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVNALLI*LRECQI
Trigger: TATCTGACACTCCCTCAGCCAGATAAGAAGGGCATT...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAAATGCCCTTCTTATCTaGCTGAGGGAGTGTCAGATA +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSINALLI*LRECQI
Trigger: TATCTGACACTCCCTCAGCCAGATAAGAAGGGCATT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGATGTCCCTTCACCTaGCTGATGAGAGACATGATT +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRCPFT*LMRDMI
Trigger: AATCATGTCTCTCATCAGCCAGGTGAAGGGACATCT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCAGATGTCCCTTCACCTaGCTGATGAGAGACATGATT +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCRCPFT*LMRDMI
Trigger: AATCATGTCTCTCATCAGCCAGGTGAAGGGACATCT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGTGCTGTCAAGCATTTaGCCCTCCTCATCCACCGTT +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYVLSSI*PSSSTV
Trigger: AACGGTGGATGAGGAGGGCCAAATGCTTGACAGCAC...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATTATGAGCTGGAGTTTTaGCTGCTCTTCAGCATGCTC +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHYELEF*LLFSML
Trigger: GAGCATGCTGAAGAGCAGCCAAAACTCCAGCTCATA...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAATGGTGAGTATGAGCTaGAGTTTTGGCTGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIMVSMS*SFGCSS
Trigger: TGAAGAGCAGCCAAAACTCCAGCTCATACTCACCAT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAGCAGAACAGCTATATaGCAACAAACATGTGCCACG +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHSRTAI*QQTCAT
Trigger: CGTGGCACATGTTTGTTGTCATATAGCTGTTCTGCT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAAAATTTGGGAAGCTTTaGACTCGTAGATGTCCCTTC +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIKFGKL*TRRCPF
Trigger: GAAGGGACATCTACGAGTTCAAAGCTTCCCAAATTT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGATCTAAACCACACTTaGAACTCTCTGGGACATAAG +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIDLNHT*NSLGHK
Trigger: CTTATGTCCCAGAGAGTTTCAAGTGTGGTTTAGATC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCTCTCAGAGACTTGTTaGAAACATCTGTCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHLSETC*KHLSLH
Trigger: ATGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATCACATGCCTAGCTTCTaGAGAATCTGCCCTCTGATC +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYHMPSF*RICPLI
Trigger: GATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTG...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTTAATTCAGGCCCTGTaGATATTTCAGCGAGTGTTC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCLIQAL*IFQRVF
Trigger: GAACACTCGCTGAAATATGCACAGGGCCTGAATTAA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTAGCTGGAGTTTTGGCTaGTCTTCAGCATGCTCCCAA +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSWSFG*SSACSQ
Trigger: TTGGGAGCATGCTGAAGAGCAGCCAAAACTCCAGCT...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAACCACACGAATGACTaGACTGAAGAGAAGTATTGC +
Preference number: 4 (lower is better)
Translates to: PESSVGPINQYVNMLCMPNHTND*TEEKYC
Trigger: GCAATACTTCTCTTCAGTCCAGTCATTCGTGTGGTT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATACTTTGGAGCTTCCCTTaGTCTTTCTTAGACATTTTG +
Preference number: 4 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSILWSFP*SFLDIL
Trigger: CAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAG...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTGTGTCTCTCTGGTTaGGTTTGCTGTTCCCACAAG +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCLCLSG*VCCSHK
Trigger: CTTGTGGGAACAGCAAACGCAACCAGAGAGACACAA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTTTAATTCAGGCCCTGTaGATATTTCAGCGAGTGTTC +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSLIQAL*IFQRVF
Trigger: GAACACTCGCTGAAATATGCACAGGGCCTGAATTAA...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATATCGTCTGTGCTTTCTaGTGTTTCTCCTTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYIVCAF*CFSFWV
Trigger: GACCCAGAAGGAGAAACAGCAGAAAGCACAGACGAT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCAAAATGCATTTCTCTaGTTGCCCTTCTTCTTCACT +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVQNAFL*LPFFFT
Trigger: AGTGAAGAAGAAGGGCAAGCAGAGAAATGCATTTTG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTATAGTGGACCCAAAATaGATTTCTCTGCTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSIVDPK*ISLLAL
Trigger: AAGGGCAAGCAGAGAAATGCATTTTGGGTCCACTAT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATCTCTGTAGACACATCTaGCGTTTCCAACAAGAGACG +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYLCRHI*RFQQET
Trigger: CGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAG...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTGTCCTCTGGGCTCATaGCTTGTTTGTATTGCCACT +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCCPLGS*LVCIAT
Trigger: AGTGGCAATACAAACAAGCCATGAGCCCAGAGGACA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCGGCCAAGTTAACCTTTaGGCTCTTCTTAAACTTTTC +
Preference number: 4 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCGQVNL*ALLKLF
Trigger: GAAAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGCC...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGTTTCAAGAATTTGTTaGAAATCCACGTGTCCATGC +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVVSRIC*KSTCPC
Trigger: GCATGGACACGTGGATTTCCAACAAATTCTTGAAAC...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATACAGGATGCTCTTCTTaGCCAGACCCTTTCCTTACT +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYTGCSS*PDPFLT
Trigger: AGTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGGTCAGAGAAAGACGATaGCATATTTCATTACAGCTT +
Preference number: 4 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRVRERR*HISLQL
Trigger: AAGCTGTAATGAAATATGCCATCGTCTTTCTCTGAC...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCTTTGGAGCTTCCCTTaGTCTTTCTTAGACATTTTG +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHLWSFP*SFLDIL
Trigger: CAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTCTCTCAGAGACTTGTTaGAAACATCTGTCCCTCCAT +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCLSETC*KHLSLH
Trigger: ATGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAG...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCTTTGTACTCATTTTTaGCTGCTTTGGTGTTATTGG +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLCTHF*LLWCYW
Trigger: CCAATAACACCAAAGCAGTCAAAAATGAGTACAAAG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATATGACAACAAACATGTaGCACGGATATTCACAGCCG +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYMTTNM*HGYSQP
Trigger: CGGCTGTGAATATCCGTGGCACATGTTTGTTGTCAT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAGCAACCATAGTATCTaGGGTGTTTGTTTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHSNHSI*GVCFCL
Trigger: AAGACAGAAACAAACACCGCAGATACTATGGTTGCT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCAAAATGCATTTCTCTaGTTGCCCTTCTTCTTCACT +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHQNAFL*LPFFFT
Trigger: AGTGAAGAAGAAGGGCAAGCAGAGAAATGCATTTTG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGGCCAAGTTAACCTTTaGGCTCTTCTTAAACTTTTC +
Preference number: 4 (lower is better)
Translates to: VTRIIRWPNQSICQYALHGQVNL*ALLKLF
Trigger: GAAAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGCC...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATATGGTGAGTATGAGCTaGAGTTTTGGCTGCTCTTCA +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYMVSMS*SFGCSS
Trigger: TGAAGAGCAGCCAAAACTCCAGCTCATACTCACCAT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTAAATTTGGGAAGCTTTaGACTCGTAGATGTCCCTTC +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCKFGKL*TRRCPF
Trigger: GAAGGGACATCTACGAGTTCAAAGCTTCCCAAATTT...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR TCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATAAATACCTCACACACTaGAGTATGGTGCTGGGAATA +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYKYLTH*SMVLGI
Trigger: TATTCCCAGCACCATACTTCAGTGTGTGAGGTATTT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR GCA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCAAACAAGTATCTTTTaGATTGAAAGGAAGGATGGA +
Preference number: 4 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVQTSIF*IERKDG
Trigger: TCCATCCTTCCTTTCAATGCAAAAGATACTTGTTTG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTAACCACACGAATGACTaGACTGAAGAGAAGTATTGC +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCNHTND*TEEKYC
Trigger: GCAATACTTCTCTTCAGTCCAGTCATTCGTGTGGTT...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTGTCAGAGAAAGACGATaGCATATTTCATTACAGCTT +
Preference number: 4 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCVRERR*HISLQL
Trigger: AAGCTGTAATGAAATATGCCATCGTCTTTCTCTGAC...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CCA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATACAACTCAGACTTTTTaGAATATTTTAGCAGAAGGG +
Preference number: 4 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYTTQTF*NILAEG
Trigger: CCCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGT...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp CGGATGACCACCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTTGTaGAAGCCTTTGGCGACCTGCAGGAGTTTTCCGGAGACGTCGAGT +
Preference number: 5 (lower is better)
Translates to: RMTTCGAMGVAGFSL*KPLATCRSFPETSS
Trigger: ACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGGTCATCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp GGAGACTCGGGCTTGTCGGATGACCACCTGCGGGGCGATGGGCGTTaGAGGCTTCAGCTTGTGCAAGCCTTTGGCGACCTGCAGGAGTTT +
Preference number: 5 (lower is better)
Translates to: GDSGLSDDHLRGDGR*RLQLVQAFGDLQEF
Trigger: AAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGGTCATCCGACAAGCCCGAGTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp AACCGGTCCATCAAGAAGACAATAGCGGAGGCGGCAGCGCAGTCCTaGACAAGGATGGAGGCTCGCAAGGCCGCCAGTAACTGCTGCAGC +
Preference number: 5 (lower is better)
Translates to: NRSIKKTIAEAAAQS*TRMEARKAASNCCS
Trigger: GCTGCAGCAGTTACTGGCGGCCTTGCGAGCCTCCATCCTTGTCCAGGACTGCGCTGCCGCCTCCGCTATTGTCTTCTTGATGGACCGGTT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTTGTGCAAGCCTTTaGCGACCTGCAGGAGTTTTCCGGAGACGTCGAGTCCATACAGGA +
Preference number: 5 (lower is better)
Translates to: PAGRWALQASACASL*RPAGVFRRRRVHTG
Trigger: TCCTGTATGGACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp GCGCAGTCCTGGACAAGGATGGAGGCTCGCAAGGCCGCCAGTAACTaGTGCAGCCCGGCGCCAATCACATCTTGCAGGTTTGTTTTGTCC +
Preference number: 5 (lower is better)
Translates to: AQSWTRMEARKAASN*CSPAPITSCRFVLS
Trigger: GGACAAAACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTTGCGAGCCTCCATCCTTGTCCAGGACTGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp GCGATGGGCGTTGCAGGCTTCAGCTTGTGCAAGCCTTTGGCGACCTaGAGGAGTTTTCCGGAGACGTCGAGTCCATACAGGAACCGGTCC +
Preference number: 5 (lower is better)
Translates to: AMGVAGFSLCKPLAT*RSFPETSSPYRNRS
Trigger: GGACCGGTTCCTGTATGGACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGACGGAGACTCGGGCTaGTCGGATGACCACCTGCGG +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPDGDSG*SDDHLR
Trigger: CCGCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp CAGTCCTGGACAAGGATGGAGGCTCGCAAGGCCGCCAGTAACTGCTaGAGCCCGGCGCCAATCACATCTTGCAGGTTTGTTTTGTCCTCT +
Preference number: 5 (lower is better)
Translates to: QSWTRMEARKAASNC*SPAPITSCRFVLSS
Trigger: AGAGGACAAAACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTTGCGAGCCTCCATCCTTGTCCAGGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp TGCCTTGCTGCGCGAACTGCATCTGTCTCCCCATGGAGTCTGGAGTaGACCGTGGTGAGGCCGAAAGCAGCTTTGATGAAACTGTGCAGC +
Preference number: 5 (lower is better)
Translates to: CLAARTASVSPWSLE*TVVRPKAALMKLCS
Trigger: GCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAGACTCCATGGGGAGACAGATGCAGTTCGCGCAGCAAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp TGCCACTTTTCAGGCACGAAGGGCCACTTCATTTCCTCTGCCTCCTaGATCAGGGTCCTTAACTCGCTGGGGAGTGAAGCTCTGCACCGC +
Preference number: 5 (lower is better)
Translates to: CHFSGTKGHFISSAS*IRVLNSLGSEALHR
Trigger: GCGGTGCAGAGCTTCACTCCCCAGCGAGTTAAGGACCCTGATCCAGGAGGCAGAGGAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp TCACTGCATAGCTGCCTTGCTGCGCGAACTGCATCTGTCTCCCCATaGAGTCTGGAGTGCACCGTGGTGAGGCCGAAAGCAGCTTTGATG +
Preference number: 5 (lower is better)
Translates to: SLHSCLAARTASVSP*SLECTVVRPKAALM
Trigger: CATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAGACTCCATGGGGAGACAGATGCAGTTCGCGCAGCAAGGCAGCTATGCAGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp GCGCCATCTTGGCCAATGGAGCAGATCTCTGTGCTGTCAAGCATTTaGCCCTCCTCATCCACCGTTGAGGCATCAGGGTCGACAGTCTGG +
Preference number: 5 (lower is better)
Translates to: APSWPMEQISVLSSI*PSSSTVEASGSTVW
Trigger: CCAGACTGTCGACCCTGATGCCTCAACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp GCTTATCAGGCTGCTCAGGATGTATTCTGCCTTCAACAGTTTCCCTaGGTTGACGGAGACTCGGGCTTGTCGGATGACCACCTGCGGGGC +
Preference number: 5 (lower is better)
Translates to: AYQAAQDVFCLQQFP*VDGDSGLSDDHLRG
Trigger: GCCCCGCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGTTGAAGGCAGAATACATCCTGAGCAGCCTGATAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp CCTCCTCATCCACCGTTGAGGCATCAGGGTCGACAGTCTGGTCTCTaGCTGAGCAGCCAGTCTTTGCTGAGTCAGCGTTTTGAACCGACC +
Preference number: 5 (lower is better)
Translates to: PPHPPLRHQGRQSGL*LSSQSLLSQRFEPT
Trigger: GGTCGGTTCAAAACGCTGACTCAGCAAAGACTGGCTGCTCAGTCAGAGACCAGACTGTCGACCCTGATGCCTCAACGGTGGATGAGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp ATACACAGCTCTGCTGCTTCTGTTCCTCTTGGGCTCCTCAGACGCTaGCTCAGAGCTTTGCGCCTCCACAGGATGCTCTTCTTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: IHSSAASVPLGLLRR*LRALRLHRMLFLAR
Trigger: TCTGGCCAAGAAGAGCATCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp CACGTGGTCTGTGAGCGCCATCTTGGCCAATGGAGCAGATCTCTGTaGTGTCAAGCATTTGGCCCTCCTCATCCACCGTTGAGGCATCAG +
Preference number: 5 (lower is better)
Translates to: HVVCERHLGQWSRSL*CQAFGPPHPPLRHQ
Trigger: CTGATGCCTCAACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACAGACCACGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp GACCGGACCTCAAAGCACGTGGTCTGTGAGCGCCATCTTGGCCAATaGAGCAGATCTCTGTGCTGTCAAGCATTTGGCCCTCCTCATCCA +
Preference number: 5 (lower is better)
Translates to: DRTSKHVVCERHLGQ*SRSLCCQAFGPPHP
Trigger: TGGATGAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACAGACCACGTGCTTTGAGGTCCGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp TTTCCTGAGACAGGCCTTCTCTGTCCTGGCTTGTGGGGGAAGTGCTaGAGGTGTAGAGCTTGCCCACAGCTTCACTGCATAGCTGCCTTG +
Preference number: 5 (lower is better)
Translates to: FPETGLLCPGLWGKC*RCRACPQLHCIAAL
Trigger: CAAGGCAGCTATGCAGTGAAGCTGTGGGCAAGCTCTACACCTTCAGCACTTCCCCCACAAGCCAGGACAGAGAAGGCCTGTCTCAGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp ACCGTGGTGAGGCCGAAAGCAGCTTTGATGAAACTGTGCAGCTCCTaGTTGCCACTAACCAGCTCGCCATCTTTCTTGGTCAGGAGGCCA +
Preference number: 5 (lower is better)
Translates to: TVVRPKAALMKLCSS*LPLTSSPSFLVRRP
Trigger: TGGCCTCCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp CTGGAGTGCACCGTGGTGAGGCCGAAAGCAGCTTTGATGAAACTGTaGAGCTCCTGCTTGCCACTAACCAGCTCGCCATCTTTCTTGGTC +
Preference number: 5 (lower is better)
Translates to: LECTVVRPKAALMKL*SSCLPLTSSPSFLV
Trigger: GACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CTGAAGGCAGCTGCCAGCTTGCAGGCTTCCGAGGCTGACAACAAATaGTGGTCAAACTCCTTGAGCAGGGCCAAGTTAACCTTTGGGCTC +
Preference number: 5 (lower is better)
Translates to: LKAAASLQASEADNK*WSNSLSRAKLTFGL
Trigger: GAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp TGTGTAGGCACTGAAGGCAGCTGCCAGCTTGCAGGCTTCCGAGGCTaGCAACAAATGGTGGTCAAACTCCTTGAGCAGGGCCAAGTTAAC +
Preference number: 5 (lower is better)
Translates to: CVGTEGSCQLAGFRG*QQMVVKLLEQGQVN
Trigger: GTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTTCAGTGCCTACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp AACAGCGCAGTTCACTTCCTCCCAGCTTGTGGAAGAGCTGAGCCCTaGCAGTCTGCCCCAAGAACAGGAGCTAGAGTTGTCTCTCAGAGA +
Preference number: 5 (lower is better)
Translates to: NSAVHFLPACGRAEP*QSAPRTGARVVSQR
Trigger: TCTCTGAGAGACAACTCTAGCTCCTGTTCTTGGGGCAGACTGTCAGGGCTCAGCTCTTCCACAAGCTGGGAGGAAGTGAACTGCGCTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp AAGGCAGCTGCCAGCTTGCAGGCTTCCGAGGCTGACAACAAATGGTaGTCAAACTCCTTGAGCAGGGCCAAGTTAACCTTTGGGCTCTTC +
Preference number: 5 (lower is better)
Translates to: KAAASLQASEADNKW*SNSLSRAKLTFGLF
Trigger: GAAGAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CCA 90 bp GGAGCTTTGAAGACAAATACACAGCTCTGCTGCTTCTGTTCCTCTTaGGCTCCTCAGACGCTGCCTCAGAGCTTTGCGCCTCCACAGGAT +
Preference number: 5 (lower is better)
Translates to: GALKTNTQLCCFCSS*APQTLPQSFAPPQD
Trigger: ATCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CAAGGTCATCAGGCTGTAGGGTTCGAGCCTCAAGGATCTCTTGACTaGTCTGTCCTGCCAGCGAGGCGAAGGAACTTCTGCTTGAGTTCA +
Preference number: 5 (lower is better)
Translates to: QGHQAVGFEPQGSLD*SVLPARRRNFCLSS
Trigger: TGAACTCAAGCAGAAGTTCCTTCGCCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTGAGGCTCGAACCCTACAGCCTGATGACCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTAAGGCAGCTGCCAGCTaGCAGGCTTCCGAGGCTGAC +
Preference number: 5 (lower is better)
Translates to: ICSACLEGDRSDARLLKSKAAAS*QASEAD
Trigger: GTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTT...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp ACTCGTAGATGTCCCTTCACCTGGCTGATGAGAGACATGATTTCCTaGGACAGGCCTTCTCTGTCCTGGCTTGTGGGGGAAGTGCTGAAG +
Preference number: 5 (lower is better)
Translates to: TRRCPFTWLMRDMIS*DRPSLSWLVGEVLK
Trigger: CTTCAGCACTTCCCCCACAAGCCAGGACAGAGAAGGCCTGTCTCAGGAAATCATGTCTCTCATCAGCCAGGTGAAGGGACATCTACGAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp TTTTCAAGGTCATCAGGCTGTAGGGTTCGAGCCTCAAGGATCTCTTaGCTGGTCTGTCCTGCCAGCGAGGCGAAGGAACTTCTGCTTGAG +
Preference number: 5 (lower is better)
Translates to: FSRSSGCRVRASRIS*LVCPASEAKELLLE
Trigger: CTCAAGCAGAAGTTCCTTCGCCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTGAGGCTCGAACCCTACAGCCTGATGACCTTGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp ACTCTGTCACGTAGTGCTGTGCTGTCATCTGCCGCTCCACATCAGTaGAGTGGTGCCGGAGCCCCTTCCTCTCTTTGTATTCTTTCCCAA +
Preference number: 5 (lower is better)
Translates to: TLSRSAVLSSAAPHQ*SGAGAPSSLCILSQ
Trigger: TTGGGAAAGAATACAAAGAGAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGCAGATGACAGCACAGCACTACGTGACAGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp CTTTTGCTCGTAGAGTCTCTTGTTAAACTCTGTCACGTAGTGCTGTaGTGTCATCTGCCGCTCCACATCAGTGAAGTGGTGCCGGAGCCC +
Preference number: 5 (lower is better)
Translates to: LLLVESLVKLCHVVL*CHLPLHISEVVPEP
Trigger: GGGCTCCGGCACCACTTCACTGATGTGGAGCGGCAGATGACAGCACAGCACTACGTGACAGAGTTTAACAAGAGACTCTACGAGCAAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp AGCTCTGCACCGCTGGTCCTCACTCTTGTCCTCTGTAGACACATCTaGCGTTTCCAACAAGAGACGATCCAGCACTTGCTTGCACTCATG +
Preference number: 5 (lower is better)
Translates to: SSAPLVLTLVLCRHI*RFQQETIQHLLALM
Trigger: CATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCA +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPSSPSF*VRRPIS
Trigger: TGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCACAGGATGCTCTTCTaGGCCAGACCCTTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPHRMLF*ARPFPY
Trigger: GTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGTG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCCGAAGGAACTTCTGCTaGAGTTCAGCAGAGACCAGG +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPRRNFC*SSAETR
Trigger: CCTGGTCTCTGCTGAACTCAAGCAGAAGTTCCTTCG...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CAGTCTCAGTCTCCATATCTAGATCCAGGGAGACTCGGAATGCCTTaGAATGGGTCCAGCTTCTCCCCCTTTCTCTTTGGAGCTTCCCTT +
Preference number: 5 (lower is better)
Translates to: QSQSPYLDPGRLGMP*NGSSFSPFLFGASL
Trigger: AAGGGAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCTCCCTGGATCTAGATATGGAGACTGAGACTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCGAGACGATCCAGCACTaGCTTGCACTCATGCAGTAT +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPETIQH*LALMQY
Trigger: ATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTC...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCCTCCTCATCCACCGTaGAGGCATCAGGGTCGACAG +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRPPHPP*RHQGRQ
Trigger: CTGTCGACCCTGATGCCTCAACGGTGGATGAGGAGG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp CTGCCGCTTCATACCACATGCCTAGCTTCTGCAGAATCTGCCCTCTaGTCTGTATGCAGACCGACTGTACCAGGACTTTGTCACTCTCAT +
Preference number: 5 (lower is better)
Translates to: LPLHTTCLASAESAL*SVCRPTVPGLCHSH
Trigger: ATGAGAGTGACAAAGTCCTGGTACAGTCGGTCTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTGGTATGAAGCGGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp GTCTGGTCTCTGACTGAGCAGCCAGTCTTTGCTGAGTCAGCGTTTTaGACCGACCCATCCGGAAAGAAAGTCCTACGCGTAGACATTGAA +
Preference number: 5 (lower is better)
Translates to: VWSLTEQPVFAESAF*TDPSGKKVLRVDIE
Trigger: TTCAATGTCTACGCGTAGGACTTTCTTTCCGGATGGGTCGGTTCAAAACGCTGACTCAGCAAAGACTGGCTGCTCAGTCAGAGACCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CGGCGCCAATCACATCTTGCAGGTTTGTTTTGTCCTCTGGGCTCATaGCTTGTTTGTATTGCCACTTTTCAGGCACGAAGGGCCACTTCA +
Preference number: 5 (lower is better)
Translates to: RRQSHLAGLFCPLGS*LVCIATFQARRATS
Trigger: TGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGATTGGCGCCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAAGGCAGCTGCCAGCTaGCAGGCTTCCGAGGCTGAC +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSKAAAS*QASEAD
Trigger: GTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATACTGTGCAGCTCCTGCTaGCCACTAACCAGCTCGCCA +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSILCSSC*PLTSSP
Trigger: TGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAG...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCTGCTTCTGTTCCTCTaGGGCTCCTCAGACGCTGCC +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLLLFL*GSSDAA
Trigger: GGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCAGTTGTCATCTCCAGTaGTCTGAAGAGAGACACCAC +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPSCHLQ*SEERHH
Trigger: GTGGTGTCTCTCTTCAGACAACTGGAGATGACAACT...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp TGTCACTCTCATTCCTATACAGCCAGGTCCCGGTTGCTCCGTTGTTaGTTATCAGGCTGCTCAGGATGTATTCTGCCTTCAACAGTTTCC +
Preference number: 5 (lower is better)
Translates to: CHSHSYTARSRLLRC*LSGCSGCILPSTVS
Trigger: GGAAACTGTTGAAGGCAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGCTGTATAGGAATGAGAGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGACGGAGACTCGGGCTaGTCGGATGACCACCTGCGG +
Preference number: 5 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYDGDSG*SDDHLR
Trigger: CCGCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTC...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTTGGTGGTCAAACTCCTaGAGCAGGGCCAAGTTAACC +
Preference number: 5 (lower is better)
Translates to: ICSACLEGDRSDARLLKSWWSNS*SRAKLT
Trigger: GGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCA...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCTGTGCAGCTCCTGCTaGCCACTAACCAGCTCGCCA +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHLCSSC*PLTSSP
Trigger: TGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGGAGACTCGGAATGCCTaGGAATGGGTCCAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRETRNA*EWVQLL
Trigger: GAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCTC...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCTGCTTCTGTTCCTCTaGGGCTCCTCAGACGCTGCC +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHLLLFL*GSSDAA
Trigger: GGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCTCTTTACAGTCATACTaGGATTCTGGGACATCACCC +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPSLQSY*DSGTSP
Trigger: GGGTGATGTCCCAGAATCCAAGTATGACTGTAAAGA...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTCCTCCTCATCCACCGTaGAGGCATCAGGGTCGACAG +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSPPHPP*RHQGRQ
Trigger: CTGTCGACCCTGATGCCTCAACGGTGGATGAGGAGG...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGTGTGCTGTCAAGCATTaGGCCCTCCTCATCCACCGT +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRCAVKH*ALLIHR
Trigger: ACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACA...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp ATCAATTCTGCCGCTTCATACCACATGCCTAGCTTCTGCAGAATCTaGCCTCTGATCTGTATGCAGACCGACTGTACCAGGACTTTGTCA +
Preference number: 5 (lower is better)
Translates to: INSAASYHMPSFCRI*PLICMQTDCTRTLS
Trigger: TGACAAAGTCCTGGTACAGTCGGTCTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTGGTATGAAGCGGCAGAATTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGAGACTCGGAATGCCTaGGAATGGGTCCAGCTTCTC +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIETRNA*EWVQLL
Trigger: GAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCTC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTCTCCATTGCTGTGATTaGGTGGCTCAGTCTCAGTCT +
Preference number: 5 (lower is better)
Translates to: ICSACLEGDRSDARLLKSLHCCD*VAQSQS
Trigger: AGACTGAGACTGAGCCACCAAATCACAGCAATGGAG...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGGGCCCTTGTCTCTCAGAGACTaGTTGAAAACATCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: TAVCFQLRSASIVGWLGPLSLRD*LKTSVP
Trigger: AGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAA...GGGCCCCAACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCACAGGATGCTCTTCTaGGCCAGACCCTTTCCTTAC +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRHRMLF*ARPFPY
Trigger: GTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGTG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTGTGCTGTCAAGCATTaGGCCCTCCTCATCCACCGT +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVCAVKH*ALLIHR
Trigger: ACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp TGGAAATGCCCTTCTTATCTGGCTGAGGGAGTGTCAGATATCCTATaGCAGAGGCCCATATCAATTCTGCCGCTTCATACCACATGCCTA +
Preference number: 5 (lower is better)
Translates to: WKCPSYLAEGVSDIL*QRPISILPLHTTCL
Trigger: TAGGCATGTGGTATGAAGCGGCAGAATTGATATGGGCCTCTGTCATAGGATATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp TCTGCCAGTATGCCCAGTGATGTGGAAATGCCCTTCTTATCTGGCTaGGGGAGTGTCAGATATCCTATGACAGAGGCCCATATCAATTCT +
Preference number: 5 (lower is better)
Translates to: SASMPSDVEMPFLSG*GSVRYPMTEAHINS
Trigger: AGAATTGATATGGGCCTCTGTCATAGGATATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp ATGCACACTTTTCATTCCCGGAGGGCAGTCAGCAGAACAGCTATATaGCAACAAACATGTGCCACGGATATTCACAGCCGTGAGCACAAA +
Preference number: 5 (lower is better)
Translates to: MHTFHSRRAVSRTAI*QQTCATDIHSREHK
Trigger: TTTGTGCTCACGGCTGTGAATATCCGTGGCACATGTTTGTTGTCATATAGCTGTTCTGCTGACTGCCCTCCGGGAATGAAAAGTGTGCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS GCA 90 bp TTGGTCAGGAGGCCAATCTCAAAAGCTTCTTTGGCTTCACACAGATaGACACTTTTCATTCCCGGAGGGCAGTCAGCAGAACAGCTATAT +
Preference number: 5 (lower is better)
Translates to: LVRRPISKASLASHR*TLFIPGGQSAEQLY
Trigger: ATATAGCTGTTCTGCTGACTGCCCTCCGGGAATGAAAAGTGTGCATCTGTGTGAAGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS GCA 90 bp CCTCCGATTTTGTGTCTCTCTGGTTGCGTTTGCTGTTCCCACAAGTaGTTTCAAATACCTCACACACTGAAGTATGGTGCTGGGAATAGG +
Preference number: 5 (lower is better)
Translates to: PPILCLSGCVCCSHK*FQIPHTLKYGAGNR
Trigger: CCTATTCCCAGCACCATACTTCAGTGTGTGAGGTATTTGAAAGCACTTGTGGGAACAGCAAACGCAACCAGAGAGACACAAAATCGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp GTATCTCCCCAGGGTTTCCTCTTGATGGAGATAGTGGACCCAAAATaGATTTCTCTGCTTGCCCTTCTTCTTCACTTTCAGGTAGTCTCC +
Preference number: 5 (lower is better)
Translates to: VSPQGFLLMEIVDPK*ISLLALLLHFQVVS
Trigger: GGAGACTACCTGAAAGTGAAGAAGAAGGGCAAGCAGAGAAATGCATTTTGGGTCCACTATCTCCATCAAGAGGAAACCCTGGGGAGATAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCGCTGGTCCTCACTCTaGTCCTCTGTAGACACATCT +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVRWSSL*SSVDTS
Trigger: AGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAAGCTTGTGCAAGCCTTaGGCGACCTGCAGGAGTTTT +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSISLCKP*ATCRSF
Trigger: AAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCA +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVSSPSF*VRRPIS
Trigger: TGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCT...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCAGGCCGAAAGCAGCTTaGATGAAACTGTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCRPKAA*MKLCSS
Trigger: GGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGGCCGAAAGCAGCTTaGATGAAACTGTGCAGCTCC +
Preference number: 5 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRPKAA*MKLCSS
Trigger: GGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTGAACAGGAGCTAGAGTaGTCTCTCAGAGACTTGTTG +
Preference number: 5 (lower is better)
Translates to: ICSACLEGDRSDARLLKSEQELE*SLRDLL
Trigger: CAACAAGTCTCTGAGAGACAACTCTAGCTCCTGTTC...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp ATCGGTTTTGCTCATGGAAACAAAGATGTCTGCCAGTATGCCCAGTaGTGTGGAAATGCCCTTCTTATCTGGCTGAGGGAGTGTCAGATA +
Preference number: 5 (lower is better)
Translates to: IGFAHGNKDVCQYAQ*CGNALLIWLRECQI
Trigger: TATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGCAAAACCGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 90 bp TTGGAATGGGTCCAGCTTCTCCCCCTTTCTCTTTGGAGCTTCCCTTaGTCTTTCTTAGACATTTTGGAAGAAGCTGTACTCCTGCTGTCT +
Preference number: 5 (lower is better)
Translates to: LEWVQLLPLSLWSFP*SFLDILEEAVLLLS
Trigger: AGACAGCAGGAGTACAGCTTCTTCCAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGACCCATTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp TTGTCTCTCAGAGACTTGTTGAAAACATCTGTCCCTCCATTGCTGTaGTTTGGTGGCTCAGTCTCAGTCTCCATATCTAGATCCAGGGAG +
Preference number: 5 (lower is better)
Translates to: LSLRDLLKTSVPPLL*FGGSVSVSISRSRE
Trigger: CTCCCTGGATCTAGATATGGAGACTGAGACTGAGCCACCAAATCACAGCAATGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 90 bp TTGGATTCTGGGACATCACCCATTATTCCAGAGGGTTCTTCTTCCTaGACTGAAGGATTCGTGGTCACATCCGTGAACCTGTCTGAACTA +
Preference number: 5 (lower is better)
Translates to: LDSGTSPIIPEGSSS*TEGFVVTSVNLSEL
Trigger: TAGTTCAGACAGGTTCACGGATGTGACCACGAATCCTTCAGTTCAGGAAGAAGAACCCTCTGGAATAATGGGTGATGTCCCAGAATCCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 90 bp CCAGATACACCACAGTTTCCTGCGCTGTCCACAACTCAGACTTTTTaGAATATTTTAGCAGAAGGGCACTGTGGGCTTGTTGGAGTTGAT +
Preference number: 5 (lower is better)
Translates to: PDTPQFPALSTTQTF*NILAEGHCGLVGVD
Trigger: ATCAACTCCAACAAGCCCACAGTGCCCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGTGGACAGCGCAGGAAACTGTGGTGTATCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCGATCCAGCACTTGCTaGCACTCATGCAGTATCGAA +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVRSSTC*HSCSIE
Trigger: TTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ATATGCTCTGCATGCCTGGAAGGAGACAGATCTGATGCTAGGCTCTTGAAGTCTCATGGCTTGTTTGTATaGCCACTTTTCAGGCACGAA +
Preference number: 5 (lower is better)
Translates to: ICSACLEGDRSDARLLKSHGLFV*PLFRHE
Trigger: TTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATG...AGACTTCAAGAGCCTAGCATCAGATCTGTCTCCTTCCAGGCATGCAGAGCATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAGGCGCCAATCACATCTaGCAGGTTTGTTTTGTCCTC +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIGANHI*QVCFVL
Trigger: GAGGACAAAACAAACCTGCAAGATGTGATTGGCGCC...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAGCTTGTGCAAGCCTTaGGCGACCTGCAGGAGTTTT +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSSLCKP*ATCRSF
Trigger: AAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGTTTGTGTCTCTCTGGTaGCGTTTGCTGTTCCCACAA +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRFVSLW*RLLFPQ
Trigger: TTGTGGGAACAGCAAACGCAACCAGAGAGACACAAA...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTCTCCATTGCTGTGATTaGGTGGCTCAGTCTCAGTCT +
Preference number: 5 (lower is better)
Translates to: PESSVGPINQYVNMLCMPLHCCD*VAQSQS
Trigger: AGACTGAGACTGAGCCACCAAATCACAGCAATGGAG...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCTGAGCAGCCAGTCTTaGCTGAGTCAGCGTTTTGAA +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLSSQS*LSQRFE
Trigger: TTCAAAACGCTGACTCAGCAAAGACTGGCTGCTCAG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 90 bp TTTCATAATCGGTTTTGCTCATGGAAACAAAGATGTCTGCCAGTATaGCCAGTGATGTGGAAATGCCCTTCTTATCTGGCTGAGGGAGTG +
Preference number: 5 (lower is better)
Translates to: FHNRFCSWKQRCLPV*PVMWKCPSYLAEGV
Trigger: CACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGCAAAACCGATTATGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CCA 90 bp TTTTGCTCATGGAAACAAAGATGTCTGCCAGTATGCCCAGTGATGTaGAAATGCCCTTCTTATCTGGCTGAGGGAGTGTCAGATATCCTA +
Preference number: 5 (lower is better)
Translates to: FCSWKQRCLPVCPVM*KCPSYLAEGVSDIL
Trigger: TAGGATATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGCAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CCA 90 bp TCTGTCTTCAGAGTGGTAATACAGACCTCCGATTTTGTGTCTCTCTaGTTGCGTTTGCTGTTCCCACAAGTGCTTTCAAATACCTCACAC +
Preference number: 5 (lower is better)
Translates to: SVFRVVIQTSDFVSL*LRLLFPQVLSNTSH
Trigger: GTGTGAGGTATTTGAAAGCACTTGTGGGAACAGCAAACGCAACCAGAGAGACACAAAATCGGAGGTCTGTATTACCACTCTGAAGACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCGATCCAGCACTTGCTaGCACTCATGCAGTATCGAA +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHRSSTC*HSCSIE
Trigger: TTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGAGACGATCCAGCACTaGCTTGCACTCATGCAGTAT +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSETIQH*LALMQY
Trigger: ATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTC...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTTCTTGCAGGTTTGTTTaGTCCTCTGGGCTCATGGCT +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSSCRFV*SSGLMA
Trigger: AGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGA...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTCACATCTTGCAGGTTaGTTTTGTCCTCTGGGCTCA +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCSHLAG*FCPLGS
Trigger: TGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGGCGCCAATCACATCTaGCAGGTTTGTTTTGTCCTC +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSGANHI*QVCFVL
Trigger: GAGGACAAAACAAACCTGCAAGATGTGATTGGCGCC...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTTTTGTGTCTCTCTGGTaGCGTTTGCTGTTCCCACAA +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVFVSLW*RLLFPQ
Trigger: TTGTGGGAACAGCAAACGCAACCAGAGAGACACAAA...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGTCTCTCAGAGACTTGTaGAAAACATCTGTCCCTCCA +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRSLRDL*KTSVPP
Trigger: TGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAGA...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATAAGACACCACGGAGCTTaGAAGACAAATACACAGCTC +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSIRHHGA*KTNTQL
Trigger: GAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCT...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGACACCACGGAGCTTaGAAGACAAATACACAGCTC +
Preference number: 5 (lower is better)
Translates to: PESSVGPINQYVNMLCMPRHHGA*KTNTQL
Trigger: GAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTAGTTGTCATCTCCAGTaGTCTGAAGAGAGACACCAC +
Preference number: 5 (lower is better)
Translates to: PESSVGPINQYVNMLCMPSCHLQ*SEERHH
Trigger: GTGGTGTCTCTCTTCAGACAACTGGAGATGACAACT...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATTGGTGGTCAAACTCCTaGAGCAGGGCCAAGTTAACC +
Preference number: 5 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYWWSNS*SRAKLT
Trigger: GGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCA...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGAACAGGAGCTAGAGTaGTCTCTCAGAGACTTGTTG +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHEQELE*SLRDLL
Trigger: CAACAAGTCTCTGAGAGACAACTCTAGCTCCTGTTC...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTCGAAGGAACTTCTGCTaGAGTTCAGCAGAGACCAGG +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCRRNFC*SSAETR
Trigger: CCTGGTCTCTGCTGAACTCAAGCAGAAGTTCCTTCG...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCAGCCCCTTCCTCTCTTaGTATTCTTTCCCAACGTAT +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCSPFLS*YSFPTY
Trigger: ATACGTTGGGAAAGAATACAAAGAGAGGAAGGGGCT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTCTGAGTCGGAATCTTTaGCTCGTAGAGTCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVLSRNL*LVESLV
Trigger: AACAAGAGACTCTACGAGCAAAAGATTCCGACTCAG...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GATTCCCCTCATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATACTGAGTCGGAATCTTTaGCTCGTAGAGTCTCTTGTT +
Preference number: 5 (lower is better)
Translates to: DSPHKSVTRIIRWPNQSILSRNL*LVESLV
Trigger: AACAAGAGACTCTACGAGCAAAAGATTCCGACTCAG...TATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATGAGGGGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTCATGGCTTGTTTGTATaGCCACTTTTCAGGCACGAA +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSHGLFV*PLFRHE
Trigger: TTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATG...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCTTGCAGGTTTGTTTaGTCCTCTGGGCTCATGGCT +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSCRFV*SSGLMA
Trigger: AGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTGGTTTCAAGAATTTGTaGGAAATCCACGTGTCCATG +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVGFKNL*EIHVSM
Trigger: CATGGACACGTGGATTTCCAACAAATTCTTGAAACC...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGTTTCAAGAATTTGTaGGAAATCCACGTGTCCATG +
Preference number: 5 (lower is better)
Translates to: PESSVGPINQYVNMLCMPGFKNL*EIHVSM
Trigger: CATGGACACGTGGATTTCCAACAAATTCTTGAAACC...AGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTCTGAGCAGCCAGTCTTaGCTGAGTCAGCGTTTTGAA +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCLSSQS*LSQRFE
Trigger: TTCAAAACGCTGACTCAGCAAAGACTGGCTGCTCAG...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATCCATTGTGGGTTGGTTAATGCATTTCTCTGCTaGCCCTTCTTCTTCACTTTC +
Preference number: 5 (lower is better)
Translates to: LNDSSLFSAEVCIHCGLVNAFLC*PFFFTF
Trigger: GAAAGTGAAGAAGAAGGGCAAGCAGAGAAATGCATT...AACCAACCCACAATGGATGCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCACATCTTGCAGGTTaGTTTTGTCCTCTGGGCTCA +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSHLAG*FCPLGS
Trigger: TGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCATAGGTTTCAAGAATTaGTTGGAAATCCACGTGTCC +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCIGFKN*LEIHVS
Trigger: GGACACGTGGATTTCCAACAAATTCTTGAAACCTAT...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCTCTTTCTTAGACATTTaGGAAGAAGCTGTACTCCTG +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCSFLDI*EEAVLL
Trigger: CAGGAGTACAGCTTCTTCCAAAATGTCTAAGAAAGA...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATTCTCCCCCTTTCTCTTaGGAGCTTCCCTTGATCTTT +
Preference number: 5 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYSPPFS*ELPLIF
Trigger: AAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGA...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCTCCCCCTTTCTCTTaGGAGCTTCCCTTGATCTTT +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSPPFS*ELPLIF
Trigger: AAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAATGCATTTCTCTGCTaGCCCTTCTTCTTCACTTTC +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHNAFLC*PFFFTF
Trigger: GAAAGTGAAGAAGAAGGGCAAGCAGAGAAATGCATT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp TCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATGCCTGGAAGGCCATATTCTGTAGCTTaGTACTCATTTTTGACTGCT +
Preference number: 5 (lower is better)
Translates to: SSVGPINQYVNMLCMPGRPYSVA*YSFLTA
Trigger: AGCAGTCAAAAATGAGTACAAAGCTACAGAATATGG...CCTTCCAGGCATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATAGCAAGCATCTAAATTaGGGAAGCTTTGAACTCGTA +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHSKHLN*GSFELV
Trigger: TACGAGTTCAAAGCTTCCCAAATTTAGATGCTTGCT...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTAGCAAGCATCTAAATTaGGGAAGCTTTGAACTCGTA +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSSKHLN*GSFELV
Trigger: TACGAGTTCAAAGCTTCCCAAATTTAGATGCTTGCT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp ACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTATAGGTTTCAAGAATTaGTTGGAAATCCACGTGTCC +
Preference number: 5 (lower is better)
Translates to: TNRNHNGLMTAVCFQLRSIGFKN*LEIHVS
Trigger: GGACACGTGGATTTCCAACAAATTCTTGAAACCTAT...AGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCTCTCAGAGACTTGTaGAAAACATCTGTCCCTCCA +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSLRDL*KTSVPP
Trigger: TGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATTCTTTACAGTCATACTaGGATTCTGGGACATCACCC +
Preference number: 5 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYSLQSY*DSGTSP
Trigger: GGGTGATGTCCCAGAATCCAAGTATGACTGTAAAGA...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCCACAACTCAGACTTTTaGGAATATTTTAGCAGAAGG +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCHNSDF*EYFSRR
Trigger: CCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGTG...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTAGCCCCTTCCTCTCTTaGTATTCTTTCCCAACGTAT +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSPFLS*YSFPTY
Trigger: ATACGTTGGGAAAGAATACAAAGAGAGGAAGGGGCT...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp AAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTTCAGCTGAGGTCTGCGCTTTGTACTCATTTTaGACTGCTTTGGTGTTATTG +
Preference number: 5 (lower is better)
Translates to: KPKPQWLNDSSLFSAEVCALYSF*TALVLL
Trigger: CAATAACACCAAAGCAGTCAAAAATGAGTACAAAGC...GCAGACCTCAGCTGAAAACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTTGTCTCTCAGAGACTaGTTGAAAACATCTGTCCCT +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCLSLRD*LKTSVP
Trigger: AGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp GTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTCTGCATCCATATTCTGTAGCTTaGTACTCATTTTTGACTGCT +
Preference number: 5 (lower is better)
Translates to: VTRIIRWPNQSICQYALHPYSVA*YSFLTA
Trigger: AGCAGTCAAAAATGAGTACAAAGCTACAGAATATGG...ATGCAGAGCATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTTCTTTCTTAGACATTTaGGAAGAAGCTGTACTCCTG +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCSFLDI*EEAVLL
Trigger: CAGGAGTACAGCTTCTTCCAAAATGTCTAAGAAAGA...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CTACACAACAACAAAACAAACCGAAACCACAATGGCTTAATGACAGCAGTTTGTCACAACTCAGACTTTTaGGAATATTTTAGCAGAAGG +
Preference number: 5 (lower is better)
Translates to: LHNNKTNRNHNGLMTAVCHNSDF*EYFSRR
Trigger: CCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGTG...ACAAACTGCTGTCATTAAGCCATTGTGGTTTCGGTTTGTTTTGTTGTTGTGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS-3UTR CAA 90 bp CATAAGTCAGTGACCAGAATCATCCGTTGGCCCAATCAATCAATATGTCAATATGCTTTGTACTCATTTTaGACTGCTTTGGTGTTATTG +
Preference number: 5 (lower is better)
Translates to: HKSVTRIIRWPNQSICQYALYSF*TALVLL
Trigger: CAATAACACCAAAGCAGTCAAAAATGAGTACAAAGC...ATATTGACATATTGATTGATTGGGCCAACGGATGATTCTGGTCACTGACTTATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp GGCTTGTCGGATGACCACCTGCGGGGCGATGGGCGTTaGAGGCTTCAGCTTGTGCAAGCCTTTGGCGACCTG +
Preference number: 6 (lower is better)
Translates to: GLSDDHLRGDGR*RLQLVQAFGDL
Trigger: CAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGGTCATCCGACAAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp TGTCGGATGACCACCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTaGTGCAAGCCTTTGGCGACCTGCAGGAGTTTTCCGGAGACGTCG +
Preference number: 6 (lower is better)
Translates to: CRMTTCGAMGVAGFS*CKPLATCRSFPETS
Trigger: CGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGGTCATCCGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp ACCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTTGTaGAAGCCTTTGGCGACCTGCAGGAGTTTTCCGGAG +
Preference number: 6 (lower is better)
Translates to: TCGAMGVAGFSL*KPLATCRSFPE
Trigger: CTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp ACCACCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTaGTGCAAGCCTTTGGCGACCTGCAGGAGTTTTCCG +
Preference number: 6 (lower is better)
Translates to: TTCGAMGVAGFS*CKPLATCRSFP
Trigger: CGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp ACCTGCGGGGCGATGGGCGTTGCAGGCTTCAGCTTGTGCAAGCCTTaGGCGACCTGCAGGAGTTTTCCGGAGACGTCGAGTCCATACAGG +
Preference number: 6 (lower is better)
Translates to: TCGAMGVAGFSLCKP*ATCRSFPETSSPYR
Trigger: CCTGTATGGACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGCCCCGCAGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp AGCTGCCTTGCTGCGCGAACTGCATCTGTCTCCCCATaGAGTCTGGAGTGCACCGTGGTGAGGCCGAAAGCA +
Preference number: 6 (lower is better)
Translates to: SCLAARTASVSP*SLECTVVRPKA
Trigger: TGCTTTCGGCCTCACCACGGTGCACTCCAGACTCCATGGGGAGACAGATGCAGTTCGCGCAGCAAGGCAGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp TGGACAAGGATGGAGGCTCGCAAGGCCGCCAGTAACTaGTGCAGCCCGGCGCCAATCACATCTTGCAGGTTT +
Preference number: 6 (lower is better)
Translates to: WTRMEARKAASN*CSPAPITSCRF
Trigger: AAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTTGCGAGCCTCCATCCTTGTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp ATCAAGAAGACAATAGCGGAGGCGGCAGCGCAGTCCTaGACAAGGATGGAGGCTCGCAAGGCCGCCAGTAAC +
Preference number: 6 (lower is better)
Translates to: IKKTIAEAAAQS*TRMEARKAASN
Trigger: GTTACTGGCGGCCTTGCGAGCCTCCATCCTTGTCCAGGACTGCGCTGCCGCCTCCGCTATTGTCTTCTTGAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp CGATGGGCGTTGCAGGCTTCAGCTTGTGCAAGCCTTTaGCGACCTGCAGGAGTTTTCCGGAGACGTCGAGTC +
Preference number: 6 (lower is better)
Translates to: RWALQASACASL*RPAGVFRRRRV
Trigger: GACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GCGATGGGCGTTGCAGGCTTCAGCTTGTGCAAGCCTTaGGCGACCTGCAGGAGTTTTCCGGAGACGTCGAGT +
Preference number: 6 (lower is better)
Translates to: AMGVAGFSLCKP*ATCRSFPETSS
Trigger: ACTCGACGTCTCCGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGAAGCCTGCAACGCCCATCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp TCCCCATGGAGTCTGGAGTGCACCGTGGTGAGGCCGAAAGCAGCTTaGATGAAACTGTGCAGCTCCTGCTTGCCACTAACCAGCTCGCCA +
Preference number: 6 (lower is better)
Translates to: SPWSLECTVVRPKAA*MKLCSSCLPLTSSP
Trigger: TGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAGACTCCATGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp ACAAGGATGGAGGCTCGCAAGGCCGCCAGTAACTGCTaGAGCCCGGCGCCAATCACATCTTGCAGGTTTGTT +
Preference number: 6 (lower is better)
Translates to: TRMEARKAASNC*SPAPITSCRFV
Trigger: AACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTTGCGAGCCTCCATCCTTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp TCTGCTGCTTCTGTTCCTCTTGGGCTCCTCAGACGCTaGCTCAGAGCTTTGCGCCTCCACAGGATGCTCTTC +
Preference number: 6 (lower is better)
Translates to: SAASVPLGLLRR*LRALRLHRMLF
Trigger: GAAGAGCATCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TTTCCTCTGCCTCCTGGATCAGGGTCCTTAACTCGCTaGGGAGTGAAGCTCTGCACCGCTGGTCCTCACTCT +
Preference number: 6 (lower is better)
Translates to: FPLPPGSGSLTR*GVKLCTAGPHS
Trigger: AGAGTGAGGACCAGCGGTGCAGAGCTTCACTCCCCAGCGAGTTAAGGACCCTGATCCAGGAGGCAGAGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp ATCAGGCTGCTCAGGATGTATTCTGCCTTCAACAGTTTCCCTGAGTaGACGGAGACTCGGGCTTGTCGGATGACCACCTGCGGGGCGATG +
Preference number: 6 (lower is better)
Translates to: IRLLRMYSAFNSFPE*TETRACRMTTCGAM
Trigger: CATCGCCCCGCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGTTGAAGGCAGAATACATCCTGAGCAGCCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp ACTGAAGGCAGCTGCCAGCTTGCAGGCTTCCGAGGCTaGCAACAAATGGTGGTCAAACTCCTTGAGCAGGGC +
Preference number: 6 (lower is better)
Translates to: TEGSCQLAGFRG*QQMVVKLLEQG
Trigger: GCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCTGGCAGCTGCCTTCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS GCA 72 bp GACTGGTCTGTCCTGCCAGCGAGGCGAAGGAACTTCTaGTTGAGTTCAGCAGAGACCAGGAGCTTTCCCCAT +
Preference number: 6 (lower is better)
Translates to: DWSVLPARRRNF*LSSAETRSFPH
Trigger: ATGGGGAAAGCTCCTGGTCTCTGCTGAACTCAAGCAGAAGTTCCTTCGCCTCGCTGGCAGGACAGACCAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TCAGGCACGAAGGGCCACTTCATTTCCTCTGCCTCCTaGATCAGGGTCCTTAACTCGCTGGGGAGTGAAGCT +
Preference number: 6 (lower is better)
Translates to: SGTKGHFISSAS*IRVLNSLGSEA
Trigger: AGCTTCACTCCCCAGCGAGTTAAGGACCCTGATCCAGGAGGCAGAGGAAATGAAGTGGCCCTTCGTGCCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TGGCCAATGGAGCAGATCTCTGTGCTGTCAAGCATTTaGCCCTCCTCATCCACCGTTGAGGCATCAGGGTCG +
Preference number: 6 (lower is better)
Translates to: WPMEQISVLSSI*PSSSTVEASGS
Trigger: CGACCCTGATGCCTCAACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp CGGAGCTTTGAAGACAAATACACAGCTCTGCTGCTTCTGTTCCTCTaGGGCTCCTCAGACGCTGCCTCAGAGCTTTGCGCCTCCACAGGA +
Preference number: 6 (lower is better)
Translates to: RSFEDKYTALLLLFL*GSSDAASELCASTG
Trigger: TCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp ACAGGCCTTCTCTGTCCTGGCTTGTGGGGGAAGTGCTaGAGGTGTAGAGCTTGCCCACAGCTTCACTGCATA +
Preference number: 6 (lower is better)
Translates to: TGLLCPGLWGKC*RCRACPQLHCI
Trigger: TATGCAGTGAAGCTGTGGGCAAGCTCTACACCTTCAGCACTTCCCCCACAAGCCAGGACAGAGAAGGCCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp GTTCACTTCCTCCCAGCTTGTGGAAGAGCTGAGCCCTaGCAGTCTGCCCCAAGAACAGGAGCTAGAGTTGTC +
Preference number: 6 (lower is better)
Translates to: VHFLPACGRAEP*QSAPRTGARVV
Trigger: GACAACTCTAGCTCCTGTTCTTGGGGCAGACTGTCAGGGCTCAGCTCTTCCACAAGCTGGGAGGAAGTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp TCATCAGGCTGTAGGGTTCGAGCCTCAAGGATCTCTTaGCTGGTCTGTCCTGCCAGCGAGGCGAAGGAACTT +
Preference number: 6 (lower is better)
Translates to: SSGCRVRASRIS*LVCPASEAKEL
Trigger: AAGTTCCTTCGCCTCGCTGGCAGGACAGACCAGTCAAGAGATCCTTGAGGCTCGAACCCTACAGCCTGATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp CGTAGTGCTGTGCTGTCATCTGCCGCTCCACATCAGTaGAGTGGTGCCGGAGCCCCTTCCTCTCTTTGTATT +
Preference number: 6 (lower is better)
Translates to: RSAVLSSAAPHQ*SGAGAPSSLCI
Trigger: AATACAAAGAGAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGCAGATGACAGCACAGCACTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp ACCGTGGTGAGGCCGAAAGCAGCTTTGATGAAACTGTaGAGCTCCTGCTTGCCACTAACCAGCTCGCCATCT +
Preference number: 6 (lower is better)
Translates to: TVVRPKAALMKL*SSCLPLTSSPS
Trigger: AGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp TCAGACGCTGCCTCAGAGCTTTGCGCCTCCACAGGATaGTCTTCTTGGCCAGACCCTTTCCTTACTACATCC +
Preference number: 6 (lower is better)
Translates to: SDAASELCASTG*SSWPDPFLTTS
Trigger: GGATGTAGTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGTGGAGGCGCAAAGCTCTGAGGCAGCGTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp TGTGAGCGCCATCTTGGCCAATGGAGCAGATCTCTGTaGTGTCAAGCATTTGGCCCTCCTCATCCACCGTTG +
Preference number: 6 (lower is better)
Translates to: CERHLGQWSRSL*CQAFGPPHPPL
Trigger: CAACGGTGGATGAGGAGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TCCTCATCCACCGTTGAGGCATCAGGGTCGACAGTCTaGTCTCTGACTGAGCAGCCAGTCTTTGCTGAGTCA +
Preference number: 6 (lower is better)
Translates to: SSSTVEASGSTV*SLTEQPVFAES
Trigger: TGACTCAGCAAAGACTGGCTGCTCAGTCAGAGACCAGACTGTCGACCCTGATGCCTCAACGGTGGATGAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp CTGGGGAGTGAAGCTCTGCACCGCTGGTCCTCACTCTaGTCCTCTGTAGACACATCTGGCGTTTCCAACAAG +
Preference number: 6 (lower is better)
Translates to: LGSEALHRWSSL*SSVDTSGVSNK
Trigger: CTTGTTGGAAACGCCAGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCTTCACTCCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp AGTCTGGAGTGCACCGTGGTGAGGCCGAAAGCAGCTTaGATGAAACTGTGCAGCTCCTGCTTGCCACTAACC +
Preference number: 6 (lower is better)
Translates to: SLECTVVRPKAA*MKLCSSCLPLT
Trigger: GGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCACGGTGCACTCCAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GAAGACAAATACACAGCTCTGCTGCTTCTGTTCCTCTaGGGCTCCTCAGACGCTGCCTCAGAGCTTTGCGCC +
Preference number: 6 (lower is better)
Translates to: EDKYTALLLLFL*GSSDAASELCA
Trigger: GGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp ACCGGACCTCAAAGCACGTGGTCTGTGAGCGCCATCTaGGCCAATGGAGCAGATCTCTGTGCTGTCAAGCAT +
Preference number: 6 (lower is better)
Translates to: TGPQSTWSVSAI*ANGADLCAVKH
Trigger: ATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACAGACCACGTGCTTTGAGGTCCGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp CTTAACTCGCTGGGGAGTGAAGCTCTGCACCGCTGGTCCTCACTCTaGTCCTCTGTAGACACATCTGGCGTTTCCAACAAGAGACGATCC +
Preference number: 6 (lower is better)
Translates to: LNSLGSEALHRWSSL*SSVDTSGVSNKRRS
Trigger: GGATCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCGGTGCAGAGCTTCACTCCCCAGCGAGTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp GTGGTGAGGCCGAAAGCAGCTTTGATGAAACTGTGCAGCTCCTGCTaGCCACTAACCAGCTCGCCATCTTTCTTGGTCAGGAGGCCAATC +
Preference number: 6 (lower is better)
Translates to: VVRPKAALMKLCSSC*PLTSSPSFLVRRPI
Trigger: GATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCTCACCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp GCTGCTCAGGATGTATTCTGCCTTCAACAGTTTCCCTaGGTTGACGGAGACTCGGGCTTGTCGGATGACCAC +
Preference number: 6 (lower is better)
Translates to: AAQDVFCLQQFP*VDGDSGLSDDH
Trigger: GTGGTCATCCGACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGTTGAAGGCAGAATACATCCTGAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp TGTCCCTTCACCTGGCTGATGAGAGACATGATTTCCTaGGACAGGCCTTCTCTGTCCTGGCTTGTGGGGGAA +
Preference number: 6 (lower is better)
Translates to: CPFTWLMRDMIS*DRPSLSWLVGE
Trigger: TTCCCCCACAAGCCAGGACAGAGAAGGCCTGTCTCAGGAAATCATGTCTCTCATCAGCCAGGTGAAGGGACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp GCCAGGTCCCGGTTGCTCCGTTGTTGCTTATCAGGCTaGTCAGGATGTATTCTGCCTTCAACAGTTTCCCTG +
Preference number: 6 (lower is better)
Translates to: ARSRLLRCCLSG*SGCILPSTVSL
Trigger: CAGGGAAACTGTTGAAGGCAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp AAGACAAATACACAGCTCTGCTGCTTCTGTTCCTCTTaGGCTCCTCAGACGCTGCCTCAGAGCTTTGCGCCT +
Preference number: 6 (lower is better)
Translates to: KTNTQLCCFCSS*APQTLPQSFAP
Trigger: AGGCGCAAAGCTCTGAGGCAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TCAAAGCACGTGGTCTGTGAGCGCCATCTTGGCCAATaGAGCAGATCTCTGTGCTGTCAAGCATTTGGCCCT +
Preference number: 6 (lower is better)
Translates to: SKHVVCERHLGQ*SRSLCCQAFGP
Trigger: AGGGCCAAATGCTTGACAGCACAGAGATCTGCTCCATTGGCCAAGATGGCGCTCACAGACCACGTGCTTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TGCTGTGCTGTCATCTGCCGCTCCACATCAGTGAAGTaGTGCCGGAGCCCCTTCCTCTCTTTGTATTCTTTC +
Preference number: 6 (lower is better)
Translates to: CCAVICRSTSVK*CRSPFLSLYSF
Trigger: GAAAGAATACAAAGAGAGGAAGGGGCTCCGGCACCACTTCACTGATGTGGAGCGGCAGATGACAGCACAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp CTCAGGATGTATTCTGCCTTCAACAGTTTCCCTGAGTaGACGGAGACTCGGGCTTGTCGGATGACCACCTGC +
Preference number: 6 (lower is better)
Translates to: LRMYSAFNSFPE*TETRACRMTTC
Trigger: GCAGGTGGTCATCCGACAAGCCCGAGTCTCCGTCAACTCAGGGAAACTGTTGAAGGCAGAATACATCCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp TGCCTCAGAGCTTTGCGCCTCCACAGGATGCTCTTCTaGGCCAGACCCTTTCCTTACTACATCCTGAACAGC +
Preference number: 6 (lower is better)
Translates to: CLRALRLHRMLF*ARPFPYYILNS
Trigger: GCTGTTCAGGATGTAGTAAGGAAAGGGTCTGGCCAAGAAGAGCATCCTGTGGAGGCGCAAAGCTCTGAGGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp AGGCCGAAAGCAGCTTTGATGAAACTGTGCAGCTCCTaGTTGCCACTAACCAGCTCGCCATCTTTCTTGGTC +
Preference number: 6 (lower is better)
Translates to: RPKAALMKLCSS*LPLTSSPSFLV
Trigger: GACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp AGACACCACGGAGCTTTGAAGACAAATACACAGCTCTaGTGCTTCTGTTCCTCTTGGGCTCCTCAGACGCTG +
Preference number: 6 (lower is better)
Translates to: RHHGALKTNTQL*CFCSSWAPQTL
Trigger: CAGCGTCTGAGGAGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp CCGCTGGTCCTCACTCTTGTCCTCTGTAGACACATCTaGCGTTTCCAACAAGAGACGATCCAGCACTTGCTT +
Preference number: 6 (lower is better)
Translates to: PLVLTLVLCRHI*RFQQETIQHLL
Trigger: AAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAGGACAAGAGTGAGGACCAGCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp GCCAGCTTGCAGGCTTCCGAGGCTGACAACAAATGGTaGTCAAACTCCTTGAGCAGGGCCAAGTTAACCTTT +
Preference number: 6 (lower is better)
Translates to: ASLQASEADNKW*SNSLSRAKLTF
Trigger: AAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CAA 72 bp CACATCTGGCGTTTCCAACAAGAGACGATCCAGCACTaGCTTGCACTCATGCAGTATCGAAGCCACGGCATC +
Preference number: 6 (lower is better)
Translates to: HIWRFQQETIQH*LALMQYRSHGI
Trigger: GATGCCGTGGCTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAGATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp CTCTCATTCCTATACAGCCAGGTCCCGGTTGCTCCGTaGTTGCTTATCAGGCTGCTCAGGATGTATTCTGCC +
Preference number: 6 (lower is better)
Translates to: LSFLYSQVPVAP*LLIRLLRMYSA
Trigger: GGCAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGCTGTATAGGAATGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp CCGAAAGCAGCTTTGATGAAACTGTGCAGCTCCTGCTaGCCACTAACCAGCTCGCCATCTTTCTTGGTCAGG +
Preference number: 6 (lower is better)
Translates to: PKAALMKLCSSC*PLTSSPSFLVR
Trigger: CCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTTCATCAAAGCTGCTTTCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp ACATCAGTGAAGTGGTGCCGGAGCCCCTTCCTCTCTTaGTATTCTTTCCCAACGTATCTCCCCAGGGTTTCC +
Preference number: 6 (lower is better)
Translates to: TSVKWCRSPFLS*YSFPTYLPRVS
Trigger: GGAAACCCTGGGGAGATACGTTGGGAAAGAATACAAAGAGAGGAAGGGGCTCCGGCACCACTTCACTGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp CCGCCAGTAACTGCTGCAGCCCGGCGCCAATCACATCTTGCAGGTTaGTTTTGTCCTCTGGGCTCATGGCTTGTTTGTATTGCCACTTTT +
Preference number: 6 (lower is better)
Translates to: PPVTAAARRQSHLAG*FCPLGSWLVCIATF
Trigger: AAAAGTGGCAATACAAACAAGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp AGAATCTGCCCTCTGATCTGTATGCAGACCGACTGTACCAGGACTTaGTCACTCTCATTCCTATACAGCCAGGTCCCGGTTGCTCCGTTG +
Preference number: 6 (lower is better)
Translates to: RICPLICMQTDCTRT*SLSFLYSQVPVAPL
Trigger: CAACGGAGCAACCGGGACCTGGCTGTATAGGAATGAGAGTGACAAAGTCCTGGTACAGTCGGTCTGCATACAGATCAGAGGGCAGATTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp GAAGAGCTGAGCCCTGACAGTCTGCCCCAAGAACAGGAGCTAGAGTaGTCTCTCAGAGACTTGTTGAAAACATCTGTCCCTCCATTGCTG +
Preference number: 6 (lower is better)
Translates to: EELSPDSLPQEQELE*SLRDLLKTSVPPLL
Trigger: CAGCAATGGAGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAACTCTAGCTCCTGTTCTTGGGGCAGACTGTCAGGGCTCAGCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp GAGACCAGGAGCTTTCCCCATCTGACGAACAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCAAAAGCTTCTTTGGCTTCACACAGA +
Preference number: 6 (lower is better)
Translates to: ETRSFPHLTNSSPSF*VRRPISKASLASHR
Trigger: TCTGTGTGAAGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGTTCGTCAGATGGGGAAAGCTCCTGGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159720.2
CDS GCA 72 bp CTGGCGTTTCCAACAAGAGACGATCCAGCACTTGCTTaGACTCATGCAGTATCGAAGCCACGGCATCTTGAT +
Preference number: 6 (lower is better)
Translates to: LAFPTRDDPALA*THAVSKPRHLD
Trigger: ATCAAGATGCCGTGGCTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp ACATCTGGCGTTTCCAACAAGAGACGATCCAGCACTTaGTTGCACTCATGCAGTATCGAAGCCACGGCATCT +
Preference number: 6 (lower is better)
Translates to: TSGVSNKRRSST*LHSCSIEATAS
Trigger: AGATGCCGTGGCTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAGATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp ATATCTAGATCCAGGGAGACTCGGAATGCCTTGGAATaGGTCCAGCTTCTCCCCCTTTCTCTTTGGAGCTTC +
Preference number: 6 (lower is better)
Translates to: ISRSRETRNALE*VQLLPLSLWSF
Trigger: GAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCTCCCTGGATCTAGATAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TCTCCATATCTAGATCCAGGGAGACTCGGAATGCCTTaGAATGGGTCCAGCTTCTCCCCCTTTCTCTTTGGA +
Preference number: 6 (lower is better)
Translates to: SPYLDPGRLGMP*NGSSFSPFLFG
Trigger: TCCAAAGAGAAAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTCTCCCTGGATCTAGATATGGAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp AGGCTGGTGATTTTAGCCACCATGGTGAGTATGAGCTaGAGTTTTGGCTGCTCTTCAGCATGCTCCCAAGCT +
Preference number: 6 (lower is better)
Translates to: RLVILATMVSMS*SFGCSSACSQA
Trigger: AGCTTGGGAGCATGCTGAAGAGCAGCCAAAACTCCAGCTCATACTCACCATGGTGGCTAAAATCACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp ACTGCTGCAGCCCGGCGCCAATCACATCTTGCAGGTTaGTTTTGTCCTCTGGGCTCATGGCTTGTTTGTATT +
Preference number: 6 (lower is better)
Translates to: TAAARRQSHLAG*FCPLGSWLVCI
Trigger: AATACAAACAAGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGATTGGCGCCGGGCTGCAGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp TCATTCCTATACAGCCAGGTCCCGGTTGCTCCGTTGTaGCTTATCAGGCTGCTCAGGATGTATTCTGCCTTC +
Preference number: 6 (lower is better)
Translates to: SFLYSQVPVAPL*LIRLLRMYSAF
Trigger: GAAGGCAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGCTGTATAGGAATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp CCTCTGATCTGTATGCAGACCGACTGTACCAGGACTTaGTCACTCTCATTCCTATACAGCCAGGTCCCGGTT +
Preference number: 6 (lower is better)
Translates to: PLICMQTDCTRT*SLSFLYSQVPV
Trigger: AACCGGGACCTGGCTGTATAGGAATGAGAGTGACAAAGTCCTGGTACAGTCGGTCTGCATACAGATCAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp AGCTCCTGCTTGCCACTAACCAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCAAAAGCTTCTTTGGCT +
Preference number: 6 (lower is better)
Translates to: SSCLPLTSSPSF*VRRPISKASLA
Trigger: AGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp AAACTGTGCAGCTCCTGCTTGCCACTAACCAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCAAAAGCTTCTTTGGCTTCACACAGA +
Preference number: 6 (lower is better)
Translates to: KLCSSCLPLTSSPSF*VRRPISKASLASHR
Trigger: TCTGTGTGAAGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGGTTAGTGGCAAGCAGGAGCTGCACAGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp ATGCCCAGTGATGTGGAAATGCCCTTCTTATCTGGCTaGGGGAGTGTCAGATATCCTATGACAGAGGCCCAT +
Preference number: 6 (lower is better)
Translates to: MPSDVEMPFLSG*GSVRYPMTEAH
Trigger: ATGGGCCTCTGTCATAGGATATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 72 bp GCTCATGGAAACAAAGATGTCTGCCAGTATGCCCAGTaGTGTGGAAATGCCCTTCTTATCTGGCTGAGGGAG +
Preference number: 6 (lower is better)
Translates to: AHGNKDVCQYAQ*CGNALLIWLRE
Trigger: CTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS TCA 72 bp GGGACATCACCCATTATTCCAGAGGGTTCTTCTTCCTaGACTGAAGGATTCGTGGTCACATCCGTGAACCTG +
Preference number: 6 (lower is better)
Translates to: GTSPIIPEGSSS*TEGFVVTSVNL
Trigger: CAGGTTCACGGATGTGACCACGAATCCTTCAGTTCAGGAAGAAGAACCCTCTGGAATAATGGGTGATGTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp ATCAATTCTGCCGCTTCATACCACATGCCTAGCTTCTaGAGAATCTGCCCTCTGATCTGTATGCAGACCGAC +
Preference number: 6 (lower is better)
Translates to: INSAASYHMPSF*RICPLICMQTD
Trigger: GTCGGTCTGCATACAGATCAGAGGGCAGATTCTGCAGAAGCTAGGCATGTGGTATGAAGCGGCAGAATTGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS GCA 72 bp GTAGAGTCTCTTGTTAAACTCTGTCACGTAGTGCTGTaGTGTCATCTGCCGCTCCACATCAGTGAAGTGGTG +
Preference number: 6 (lower is better)
Translates to: VESLVKLCHVVL*CHLPLHISEVV
Trigger: CACCACTTCACTGATGTGGAGCGGCAGATGACAGCACAGCACTACGTGACAGAGTTTAACAAGAGACTCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GCTTCCGAGGCTGACAACAAATGGTGGTCAAACTCCTaGAGCAGGGCCAAGTTAACCTTTGGGCTCTTCTTA +
Preference number: 6 (lower is better)
Translates to: ASEADNKWWSNS*SRAKLTFGLFL
Trigger: TAAGAAGAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CAA 72 bp AGCCCTGACAGTCTGCCCCAAGAACAGGAGCTAGAGTaGTCTCTCAGAGACTTGTTGAAAACATCTGTCCCT +
Preference number: 6 (lower is better)
Translates to: SPDSLPQEQELE*SLRDLLKTSVP
Trigger: AGGGACAGATGTTTTCAACAAGTCTCTGAGAGACAACTCTAGCTCCTGTTCTTGGGGCAGACTGTCAGGGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp AGCTTTCCCCATCTGACGAACAGCTCGCCATCTTTCTaGGTCAGGAGGCCAATCTCAAAAGCTTCTTTGGCT +
Preference number: 6 (lower is better)
Translates to: SFPHLTNSSPSF*VRRPISKASLA
Trigger: AGCCAAAGAAGCTTTTGAGATTGGCCTCCTGACCAAGAAAGATGGCGAGCTGTTCGTCAGATGGGGAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159720.2
CDS CAA 90 bp ATCTTGCAGGTTTGTTTTGTCCTCTGGGCTCATGGCTTGTTTGTATaGCCACTTTTCAGGCACGAAGGGCCACTTCATTTCCTCTGCCTC +
Preference number: 6 (lower is better)
Translates to: ILQVCFVLWAHGLFV*PLFRHEGPLHFLCL
Trigger: GAGGCAGAGGAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp TTGTCACTCTCATTCCTATACAGCCAGGTCCCGGTTGCTCCGTTGTaGCTTATCAGGCTGCTCAGGATGTATTCTGCCTTCAACAGTTTC +
Preference number: 6 (lower is better)
Translates to: LSLSFLYSQVPVAPL*LIRLLRMYSAFNSF
Trigger: GAAACTGTTGAAGGCAGAATACATCCTGAGCAGCCTGATAAGCAACAACGGAGCAACCGGGACCTGGCTGTATAGGAATGAGAGTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp CCTTCTTATCTGGCTGAGGGAGTGTCAGATATCCTATaGCAGAGGCCCATATCAATTCTGCCGCTTCATACC +
Preference number: 6 (lower is better)
Translates to: PSYLAEGVSDIL*QRPISILPLHT
Trigger: GGTATGAAGCGGCAGAATTGATATGGGCCTCTGTCATAGGATATCTGACACTCCCTCAGCCAGATAAGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS GCA 72 bp CAAAGATGTCTGCCAGTATGCCCAGTGATGTGGAAATaGCCTTCTTATCTGGCTGAGGGAGTGTCAGATATC +
Preference number: 6 (lower is better)
Translates to: QRCLPVCPVMWK*PSYLAEGVSDI
Trigger: GATATCTGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CCA 72 bp TGGAAACAAAGATGTCTGCCAGTATGCCCAGTGATGTaGAAATGCCCTTCTTATCTGGCTGAGGGAGTGTCA +
Preference number: 6 (lower is better)
Translates to: WKQRCLPVCPVM*KCPSYLAEGVS
Trigger: TGACACTCCCTCAGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CAA 72 bp CATCTCCAGTTGTCTGAAGAGAGACACCACGGAGCTTaGAAGACAAATACACAGCTCTGCTGCTTCTGTTCC +
Preference number: 6 (lower is better)
Translates to: HLQLSEERHHGA*KTNTQLCCFCS
Trigger: GGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCTCTCTTCAGACAACTGGAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp CTCTGTAGACACATCTGGCGTTTCCAACAAGAGACGATCCAGCACTaGCTTGCACTCATGCAGTATCGAAGCCACGGCATCTTGATTATT +
Preference number: 6 (lower is better)
Translates to: LCRHIWRFQQETIQH*LALMQYRSHGILII
Trigger: AATAATCAAGATGCCGTGGCTTCGATACTGCATGAGTGCAAGCAAGTGCTGGATCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp AGCTTGCAGGCTTCCGAGGCTGACAACAAATGGTGGTCAAACTCCTaGAGCAGGGCCAAGTTAACCTTTGGGCTCTTCTTAAACTTTTCA +
Preference number: 6 (lower is better)
Translates to: SLQASEADNKWWSNS*SRAKLTFGLFLNFS
Trigger: TGAAAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCACCATTTGTTGTCAGCCTCGGAAGCCTGCAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CAA 90 bp GACTCGGAATGCCTTGGAATGGGTCCAGCTTCTCCCCCTTTCTCTTaGGAGCTTCCCTTGATCTTTCTTAGACATTTTGGAAGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: DSECLGMGPASPPFS*ELPLIFLRHFGRSC
Trigger: ACAGCTTCTTCCAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGACCCATTCCAAGGCATTCCGAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 90 bp CTAAGTTGTCATCTCCAGTTGTCTGAAGAGAGACACCACGGAGCTTaGAAGACAAATACACAGCTCTGCTGCTTCTGTTCCTCTTGGGCT +
Preference number: 6 (lower is better)
Translates to: LSCHLQLSEERHHGA*KTNTQLCCFCSSWA
Trigger: AGCCCAAGAGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCTCTCTTCAGACAACTGGAGATGACAACTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp ATCTCCAGTTGTCTGAAGAGAGACACCACGGAGCTTTaGAGACAAATACACAGCTCTGCTGCTTCTGTTCCT +
Preference number: 6 (lower is better)
Translates to: ISSCLKRDTTEL*RQIHSSAASVP
Trigger: AGGAACAGAAGCAGCAGAGCTGTGTATTTGTCTTCAAAGCTCCGTGGTGTCTCTCTTCAGACAACTGGAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp CATCTTTCTGGTCTACAGAGTGAATCTGAGGATCCGTaGGATAGATCAGGCCTTTTCCATTACCAGTCACCC +
Preference number: 6 (lower is better)
Translates to: HLSGLQSESEDP*DRSGLFHYQSP
Trigger: GGGTGACTGGTAATGGAAAAGGCCTGATCTATCTCACGGATCCTCAGATTCACTCTGTAGACCAGAAAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS GCA 72 bp CGGTTTTGCTCATGGAAACAAAGATGTCTGCCAGTATaGCCAGTGATGTGGAAATGCCCTTCTTATCTGGCT +
Preference number: 6 (lower is better)
Translates to: RFCSWKQRCLPV*PVMWKCPSYLA
Trigger: AGCCAGATAAGAAGGGCATTTCCACATCACTGGGCATACTGGCAGACATCTTTGTTTCCATGAGCAAAACCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CCA 72 bp TCACATCTTGCAGGTTTGTTTTGTCCTCTGGGCTCATaGCTTGTTTGTATTGCCACTTTTCAGGCACGAAGG +
Preference number: 6 (lower is better)
Translates to: SHLAGLFCPLGS*LVCIATFQARR
Trigger: CCTTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATGAGCCCAGAGGACAAAACAAACCTGCAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp CCACAGTTTCCTGCGCTGTCCACAACTCAGACTTTTTaGAATATTTTAGCAGAAGGGCACTGTGGGCTTGTT +
Preference number: 6 (lower is better)
Translates to: PQFPALSTTQTF*NILAEGHCGLV
Trigger: AACAAGCCCACAGTGCCCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGTGGACAGCGCAGGAAACTGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GTTTGTTTTGTCCTCTGGGCTCATGGCTTGTTTGTATaGCCACTTTTCAGGCACGAAGGGCCACTTCATTTC +
Preference number: 6 (lower is better)
Translates to: VCFVLWAHGLFV*PLFRHEGPLHF
Trigger: GAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAATACAAACAAGCCATGAGCCCAGAGGACAAAACAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp ACCACAGTTTCCTGCGCTGTCCACAACTCAGACTTTTaGGAATATTTTAGCAGAAGGGCACTGTGGGCTTGT +
Preference number: 6 (lower is better)
Translates to: TTVSCAVHNSDF*EYFSRRALWAC
Trigger: ACAAGCCCACAGTGCCCTTCTGCTAAAATATTCCAAAAAGTCTGAGTTGTGGACAGCGCAGGAAACTGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp GTCCAGCTTCTCCCCCTTTCTCTTTGGAGCTTCCCTTaGTCTTTCTTAGACATTTTGGAAGAAGCTGTACTC +
Preference number: 6 (lower is better)
Translates to: VQLLPLSLWSFP*SFLDILEEAVL
Trigger: GAGTACAGCTTCTTCCAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp TTCTCCGTGCCAGTCTTTACAGTCATACTTGGATTCTaGGACATCACCCATTATTCCAGAGGGTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: FSVPVFTVILGF*DITHYSRGFFF
Trigger: GAAGAAGAACCCTCTGGAATAATGGGTGATGTCCCAGAATCCAAGTATGACTGTAAAGACTGGCACGGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GTGGTAATACAGACCTCCGATTTTGTGTCTCTCTGGTaGCGTTTGCTGTTCCCACAAGTGCTTTCAAATACC +
Preference number: 6 (lower is better)
Translates to: VVIQTSDFVSLW*RLLFPQVLSNT
Trigger: GGTATTTGAAAGCACTTGTGGGAACAGCAAACGCAACCAGAGAGACACAAAATCGGAGGTCTGTATTACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GGTCCAGCTTCTCCCCCTTTCTCTTTGGAGCTTCCCTaGATCTTTCTTAGACATTTTGGAAGAAGCTGTACT +
Preference number: 6 (lower is better)
Translates to: GPASPPFSLELP*IFLRHFGRSCT
Trigger: AGTACAGCTTCTTCCAAAATGTCTAAGAAAGATCAAGGGAAGCTCCAAAGAGAAAGGGGGAGAAGCTGGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CAA 72 bp GTATTCTTTCCCAACGTATCTCCCCAGGGTTTCCTCTaGATGGAGATAGTGGACCCAAAATGCATTTCTCTG +
Preference number: 6 (lower is better)
Translates to: VFFPNVSPQGFL*MEIVDPKCISL
Trigger: CAGAGAAATGCATTTTGGGTCCACTATCTCCATCAAGAGGAAACCCTGGGGAGATACGTTGGGAAAGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS TCA 72 bp AGAGACTTGTTGAAAACATCTGTCCCTCCATTGCTGTaGTTTGGTGGCTCAGTCTCAGTCTCCATATCTAGA +
Preference number: 6 (lower is better)
Translates to: RDLLKTSVPPLL*FGGSVSVSISR
Trigger: TCTAGATATGGAGACTGAGACTGAGCCACCAAATCACAGCAATGGAGGGACAGATGTTTTCAACAAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp AGAGTGGTAATACAGACCTCCGATTTTGTGTCTCTCTaGTTGCGTTTGCTGTTCCCACAAGTGCTTTCAAAT +
Preference number: 6 (lower is better)
Translates to: RVVIQTSDFVSL*LRLLFPQVLSN
Trigger: ATTTGAAAGCACTTGTGGGAACAGCAAACGCAACCAGAGAGACACAAAATCGGAGGTCTGTATTACCACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp GTGGTCAAACTCCTTGAGCAGGGCCAAGTTAACCTTTaGGCTCTTCTTAAACTTTTCATAATCGGTTTTGCT +
Preference number: 6 (lower is better)
Translates to: VVKLLEQGQVNL*ALLKLFIIGFA
Trigger: AGCAAAACCGATTATGAAAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGCCCTGCTCAAGGAGTTTGACCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000029662.12
ENSMUST00000159720.2
ENSMUST00000198955.5
CDS CAA 72 bp TGTAGAGGGGATGTAGAATATCTGAGTCGGAATCTTTaGCTCGTAGAGTCTCTTGTTAAACTCTGTCACGTA +
Preference number: 6 (lower is better)
Translates to: CRGDVEYLSRNL*LVESLVKLCHV
Trigger: TACGTGACAGAGTTTAACAAGAGACTCTACGAGCAAAAGATTCCGACTCAGATATTCTACATCCCCTCTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5
CDS CCA 72 bp GTTTGCTCTAGTGAAGGTCTAGTCAGAGAAAGACGATaGCATATTTCATTACAGCTTGCATGTTGGTTATTA +
Preference number: 6 (lower is better)
Translates to: VCSSEGLVRERR*HISLQLACWLL
Trigger: TAATAACCAACATGCAAGCTGTAATGAAATATGCCATCGTCTTTCTCTGACTAGACCTTCACTAGAGCAAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029662.12
ENSMUST00000198955.5