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Pregenerated sensors for ALKAL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054204

Ensembl transcript IDs: ENSMUST00000067087.7

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AATCTCTGTCCACAGGAAGTGGGCATGAAGATGGTTCTGTTCTGTTaGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCGCTCCTTT +
Preference number: 1 (lower is better)
Translates to: NLCPQEVGMKMVLFC*FPRHFSRFLVCRSF
Trigger: AAAGGAGCGACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCTTCATGCCCACTTCCTGTGGACAGAGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
3UTR CAA 90 bp AAATCTCTGTCCACAGGAAGTGGGCATGAAGATGGTTCTGTTCTGTaGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCGCTCCTT +
Preference number: 2 (lower is better)
Translates to: KSLSTGSGHEDGSVL*VSKALFKVPGVSLL
Trigger: AAGGAGCGACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCTTCATGCCCACTTCCTGTGGACAGAGATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
3UTR CCA 72 bp CCACAGGAAGTGGGCATGAAGATGGTTCTGTTCTGTTaGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGT +
Preference number: 3 (lower is better)
Translates to: PQEVGMKMVLFC*FPRHFSRFLVC
Trigger: ACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCTTCATGCCCACTTCCTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
3UTR CCA 72 bp TACCTGGAATGTACTTTTACATTTACAGAGGACAAGTaGGACTGGCCTTGGCATAGCCACAGATACATATGC +
Preference number: 3 (lower is better)
Translates to: YLECTFTFTEDK*DWPWHSHRYIC
Trigger: GCATATGTATCTGTGGCTATGCCAAGGCCAGTCCCACTTGTCCTCTGTAAATGTAAAAGTACATTCCAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
3UTR CCA 72 bp ACTTTTACATTTACAGAGGACAAGTGGGACTGGCCTTaGCATAGCCACAGATACATATGCCACTGTTTTCAA +
Preference number: 3 (lower is better)
Translates to: TFTFTEDKWDWP*HSHRYICHCFQ
Trigger: TTGAAAACAGTGGCATATGTATCTGTGGCTATGCCAAGGCCAGTCCCACTTGTCCTCTGTAAATGTAAAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR GCA 90 bp AGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCAATCCGTGGCCTCTCTaGGGCCCAGGGCAAAGTCGG +
Preference number: 4 (lower is better)
Translates to: RWFCSVGFQGTFQGSWCVNPWPL*GPGQSR
Trigger: CCGACTTTGCCCTGGGCCGCAGAGAGGCCACGGATT...GACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CCA 90 bp AAGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCTGCCCCATAATCCGTaGCCTCTCTGCGGCCCAGGG +
Preference number: 4 (lower is better)
Translates to: KMVLFCWFPRHFSRFLVCLPHNP*PLCGPG
Trigger: CCCTGGGCCGCAGAGAGGCCACGGATTATGGGGCAG...ACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR GCA 90 bp AGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCACAATCTCCACTCTCTaGTCCTCTTGGTCTGCCCCA +
Preference number: 4 (lower is better)
Translates to: RWFCSVGFQGTFQGSWCVTISTL*SSWSAP
Trigger: TGGGGCAGACCAAGAGGAGCAGAGAGTGGAGATTGT...GACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CCA 90 bp TCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCGCTCCTTTGCAGGGAGCTGCAACCTCTTaGAGTCTCCTATGTGGAATT +
Preference number: 4 (lower is better)
Translates to: SVGFQGTFQGSWCVAPLQGAATS*SLLCGI
Trigger: AATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCC...CTGCAAAGGAGCGACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CCA 90 bp AAGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTTATAGTATGCGGGGATaGTGCAGTCTCTCGTGTTGT +
Preference number: 4 (lower is better)
Translates to: KMVLFCWFPRHFSRFLVCYSMRG*CSLSCC
Trigger: ACAACACGAGAGACTGCACCATCCCCGCATACTATA...ACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR TCA 90 bp AGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCAATAAAGAGGACCTGTaGGATGTTTCAGAAACTTGT +
Preference number: 4 (lower is better)
Translates to: RWFCSVGFQGTFQGSWCVNKEDL*DVSETC
Trigger: ACAAGTTTCTGAAACATCTCACAGGTCCTCTTTATT...GACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR GCA 90 bp GCAAAGGAATTATGGAAGAGTGCAAAAATAAATCTCTGTCCACAGGAAGTGGGCACATCTTTTATAGTATaGGGGGATGGTGCAGTCTCT +
Preference number: 4 (lower is better)
Translates to: AKELWKSAKINLCPQEVGTSFIV*GDGAVS
Trigger: AGAGACTGCACCATCCCCGCATACTATAAAAGATGT...GCCCACTTCCTGTGGACAGAGATTTATTTTTGCACTCTTCCATAATTCCTTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CCA 90 bp TTATGGAAGAGTGCAAAAATAAATCTCTGTCCACAGGAAGTGGGCATGAAGATGAATTTCTTCAGCTCCTaGACCAGCTCAACTAGCAAC +
Preference number: 4 (lower is better)
Translates to: LWKSAKINLCPQEVGMKMNFFSS*TSSTSN
Trigger: GTTGCTAGTTGAGCTGGTCCAGGAGCTGAAGAAATT...CATCTTCATGCCCACTTCCTGTGGACAGAGATTTATTTTTGCACTCTTCCATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS GCA 90 bp TTCTTCAGCTCCTGGACCAGCTCAACTAGCAACCTCAGCAGCGTTTaGCGGTCTGCAGGCCCCCTGGACTGCGCTCGTCCCCGGTCCCCC +
Preference number: 5 (lower is better)
Translates to: FFSSWTSSTSNLSSV*RSAGPLDCARPRSP
Trigger: GGGGGACCGGGGACGAGCGCAGTCCAGGGGGCCTGCAGACCGGCAAACGCTGCTGAGGTTGCTAGTTGAGCTGGTCCAGGAGCTGAAGAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS CCA 90 bp TGCGGCCCAGGGCAAAGTCGGACTCGCCAAGGAGCTGCAACCTCTTaGAGTCTCCTATGTGGAATTTCTTCAGCTCCTGGACCAGCTCAA +
Preference number: 5 (lower is better)
Translates to: CGPGQSRTRQGAATS*SLLCGISSAPGPAQ
Trigger: TTGAGCTGGTCCAGGAGCTGAAGAAATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCCTTGGCGAGTCCGACTTTGCCCTGGGCCGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS CCA 90 bp AAGTCGGACTCGCCAAGGAGCTGCAACCTCTTGGAGTCTCCTATGTaGAATTTCTTCAGCTCCTGGACCAGCTCAACTAGCAACCTCAGC +
Preference number: 5 (lower is better)
Translates to: KSDSPRSCNLLESPM*NFFSSWTSSTSNLS
Trigger: GCTGAGGTTGCTAGTTGAGCTGGTCCAGGAGCTGAAGAAATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCCTTGGCGAGTCCGACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CAA 90 bp TCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCGCTCCTTTGCAGCACTCTCTGCTCCTCTaGGTCTGCCCCATAATCCGT +
Preference number: 5 (lower is better)
Translates to: SVGFQGTFQGSWCVAPLQHSLLL*VCPIIR
Trigger: ACGGATTATGGGGCAGACCAAGAGGAGCAGAGAGTG...CTGCAAAGGAGCGACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CAA 90 bp TGTACTTTTACATTTACAGAGGACAAGTGGGACTGGCCTTGGCATAGCCACAGAAGGAGCTGCAACCTCTaGGAGTCTCCTATGTGGAAT +
Preference number: 5 (lower is better)
Translates to: CTFTFTEDKWDWPWHSHRRSCNL*ESPMWN
Trigger: ATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCCT...TCTGTGGCTATGCCAAGGCCAGTCCCACTTGTCCTCTGTAAATGTAAAAGTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS-3UTR CAA 90 bp AGATGGTTCTGTTCTGTTGGTTTCCAAGGCACTTTTCAAGGTTCCTGGTGTGTCAGATGTTTCAGAAACTaGTCCTTCATCCTTAGATCT +
Preference number: 5 (lower is better)
Translates to: RWFCSVGFQGTFQGSWCVRCFRN*SFILRS
Trigger: AGATCTAAGGATGAAGGACAAGTTTCTGAAACATCT...GACACACCAGGAACCTTGAAAAGTGCCTTGGAAACCAACAGAACAGAACCATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS GCA 72 bp GCTCCTCTTGGTCTGCCCCATAATCCGTGGCCTCTCTaGGGCCCAGGGCAAAGTCGGACTCGCCAAGGAGCT +
Preference number: 6 (lower is better)
Translates to: APLGLPHNPWPL*GPGQSRTRQGA
Trigger: AGCTCCTTGGCGAGTCCGACTTTGCCCTGGGCCGCAGAGAGGCCACGGATTATGGGGCAGACCAAGAGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS GCA 72 bp TCGAGGAACAATCTCCACTCTCTGCTCCTCTTGGTCTaGCCCATAATCCGTGGCCTCTCTGCGGCCCAGGGC +
Preference number: 6 (lower is better)
Translates to: SRNNLHSLLLLV*PIIRGLSAAQG
Trigger: GCCCTGGGCCGCAGAGAGGCCACGGATTATGGGGCAGACCAAGAGGAGCAGAGAGTGGAGATTGTTCCTCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS CAA 90 bp CTGCGGCCCAGGGCAAAGTCGGACTCGCCAAGGAGCTGCAACCTCTaGGAGTCTCCTATGTGGAATTTCTTCAGCTCCTGGACCAGCTCA +
Preference number: 6 (lower is better)
Translates to: LRPRAKSDSPRSCNL*ESPMWNFFSSWTSS
Trigger: TGAGCTGGTCCAGGAGCTGAAGAAATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCCTTGGCGAGTCCGACTTTGCCCTGGGCCGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7
CDS CCA 72 bp TCGCCAAGGAGCTGCAACCTCTTGGAGTCTCCTATGTaGAATTTCTTCAGCTCCTGGACCAGCTCAACTAGC +
Preference number: 6 (lower is better)
Translates to: SPRSCNLLESPM*NFFSSWTSSTS
Trigger: GCTAGTTGAGCTGGTCCAGGAGCTGAAGAAATTCCACATAGGAGACTCCAAGAGGTTGCAGCTCCTTGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067087.7