Pregenerated sensors for ALKAL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087247Ensembl transcript IDs: ENSMUST00000133144.4
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAGCGTCCTCTTCCTGTAGCCACTCATAGGTTTCTCCTGAGAAGTTACTTCATGTGCTCCGGGAGGCTCTaGGAGGCAGGCGAGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KRPLPVATHRFLLRSYFMCSGRL*EAGESL Trigger: CAGGGACTCGCCTGCCTCCCAGAGCCTCCCGGAGCA...CATGAAGTAACTTCTCAGGAGAAACCTATGAGTGGCTACAGGAAGAGGACGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS-3UTR CCA 90 bp | GCCACTCATAGGTTTCTCCTGAGAAGTTACTTCATGCAAGTTCATACAAAACTAAGGGAGGAAGAGCTCTaGCCTGAGCTCAGCGACACG | + |
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Preference number: 4 (lower is better) Translates to: ATHRFLLRSYFMQVHTKLREEEL*PELSDT Trigger: CGTGTCGCTGAGCTCAGGCCAGAGCTCTTCCTCCCT...TAGTTTTGTATGAACTTGCATGAAGTAACTTCTCAGGAGAAACCTATGAGTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS-3UTR TCA 90 bp | CGTCCTCTTCCTGTAGCCACTCATAGGTTTCTCCTGAGAAGTTACTTCATGCAATTTGCTACATTCAGCTaGAAATGTGACAGGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: RPLPVATHRFLLRSYFMQFATFS*KCDRPC Trigger: ACAGGGCCTGTCACATTTTCAGCTGAATGTAGCAAA...TTGCATGAAGTAACTTCTCAGGAGAAACCTATGAGTGGCTACAGGAAGAGGACG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS TCA 90 bp | TGGGAGGCAGGCGAGTCCCTGTCACAGGGAGGAAGAGCTCTGGCCTaGGCTCAGCGACACGCGCTGCCAAGCTTCTCTGGGGCCGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: WEAGESLSQGGRALA*AQRHALPSFSGAAP Trigger: AGGGGCGGCCCCAGAGAAGCTTGGCAGCGCGTGTCGCTGAGCTCAGGCCAGAGCTCTTCCTCCCTGTGACAGGGACTCGCCTGCCTCCCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS CCA 90 bp | TCAATGTCAAGTCTCTTGGGAATATTTCTGTGCTCCGGGAGGCTCTaGGAGGCAGGCGAGTCCCTGTCACAGGGAGGAAGAGCTCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: SMSSLLGIFLCSGRL*EAGESLSQGGRALA Trigger: GGCCAGAGCTCTTCCTCCCTGTGACAGGGACTCGCCTGCCTCCCAGAGCCTCCCGGAGCACAGAAATATTCCCAAGAGACTTGACATTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS-3UTR CAA 90 bp | CGTCCTCTTCCTGTAGCCACTCATAGGTTTCTCCTGAGAAGTTACTTCATGCAATCAATGTCAAGTCTCTaGGGAATATTTCTGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RPLPVATHRFLLRSYFMQSMSSL*GIFLCS Trigger: GGAGCACAGAAATATTCCCAAGAGACTTGACATTGA...TTGCATGAAGTAACTTCTCAGGAGAAACCTATGAGTGGCTACAGGAAGAGGACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS-3UTR CAA 90 bp | CGTCCTCTTCCTGTAGCCACTCATAGGTTTCTCCTGAGAAGTTACTTCATGCAAAGTCGATGGAAGTGTTaGCTACATTCAGCTGAAAAT | + |
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Preference number: 5 (lower is better) Translates to: RPLPVATHRFLLRSYFMQSRWKC*LHSAEN Trigger: ATTTTCAGCTGAATGTAGCAAACACTTCCATCGACT...TTGCATGAAGTAACTTCTCAGGAGAAACCTATGAGTGGCTACAGGAAGAGGACG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS GCA 72 bp | GAGGAAGAGCTCTGGCCTGAGCTCAGCGACACGCGCTaGCAAGCTTCTCTGGGGCCGCCCCTGAGTCCCAGG | + |
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Preference number: 6 (lower is better) Translates to: EEELWPELSDTR*QASLGPPLSPR Trigger: CCTGGGACTCAGGGGCGGCCCCAGAGAAGCTTGGCAGCGCGTGTCGCTGAGCTCAGGCCAGAGCTCTTCCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS CCA 72 bp | AGGCAGGCGAGTCCCTGTCACAGGGAGGAAGAGCTCTaGCCTGAGCTCAGCGACACGCGCTGCCAAGCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RQASPCHREEEL*PELSDTRCQAS Trigger: AGAAGCTTGGCAGCGCGTGTCGCTGAGCTCAGGCCAGAGCTCTTCCTCCCTGTGACAGGGACTCGCCTGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS GCA 72 bp | TGTCTTTCAATGTCAAGTCTCTTGGGAATATTTCTGTaGTCCGGGAGGCTCTGGGAGGCAGGCGAGTCCCTG | + |
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Preference number: 6 (lower is better) Translates to: CLSMSSLLGIFL*SGRLWEAGESL Trigger: CAGGGACTCGCCTGCCTCCCAGAGCCTCCCGGAGCACAGAAATATTCCCAAGAGACTTGACATTGAAAGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS CCA 72 bp | TCTTGTCAGCAATCTAGCACATCTTTTATAATAAGCTaGCGTCGAGCAATCCCGGGTATTGTGATAAAGTCG | + |
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Preference number: 6 (lower is better) Translates to: SCQQSSTSFIIS*RRAIPGIVIKS Trigger: CGACTTTATCACAATACCCGGGATTGCTCGACGCCAGCTTATTATAAAAGATGTGCTAGATTGCTGACAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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| CDS TCA 72 bp | GTGATAAAGTCGATGGAAGTGTTTGCTACATTCAGCTaGAAATGTGACAGGCCCTGTGAAATGCTTTATGAA | + |
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Preference number: 6 (lower is better) Translates to: VIKSMEVFATFS*KCDRPCEMLYE Trigger: TTCATAAAGCATTTCACAGGGCCTGTCACATTTTCAGCTGAATGTAGCAAACACTTCCATCGACTTTATCAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133144.4 |
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