Pregenerated sensors for ALG14 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039887Ensembl transcript IDs: ENSMUST00000039442.12, ENSMUST00000198235.2, ENSMUST00000198341.2, ENSMUST00000199554.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGAGAGCCAGGACTGCCGAACCTCCCGGCTTCTCGGAATTCGGTaGAGGTGGTACTTGGGGTATTCAGTAGTAGAGTCATTCTGGGCT | + |
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Preference number: 1 (lower is better) Translates to: EESQDCRTSRLLGIR*RWYLGYSVVESFWA Trigger: AGCCCAGAATGACTCTACTACTGAATACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR TCA 90 bp | ACAGGGATAGCGTCTCCACTCGGCAGATGCTCTCGACATAGACGATaGTCACTTTCTTCACTCCAAGTATCCCAAGAAGCAGGGCGGACA | + |
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Preference number: 1 (lower is better) Translates to: TGIASPLGRCSRHRR*SLSSLQVSQEAGRT Trigger: TGTCCGCCCTGCTTCTTGGGATACTTGGAGTGAAGAAAGTGATCATCGTCTATGTCGAGAGCATCTGCCGAGTGGAGACGCTATCCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199554.2 |
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| 3UTR TCA 90 bp | CAAGAGAATGGATTTTCTTGGCACTCATTTCATCAGACTCAGCAATaGCATAATGCCTTGGTGAATAGGCATTGGACAAGCTTCCAACCA | + |
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Preference number: 1 (lower is better) Translates to: QENGFSWHSFHQTQQ*HNALVNRHWTSFQP Trigger: TGGTTGGAAGCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATGAGTGCCAAGAAAATCCATTCTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR GCA 90 bp | GGAAGTCTGTGGAGTGTAAATGGACATGAAACCAGTTTAACAAACTaGTTCCTTTATGCTGAGATAGCTCTTGCTTCCTTTAGGCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: GSLWSVNGHETSLTN*FLYAEIALASFRLR Trigger: TCTCAGCCTAAAGGAAGCAAGAGCTATCTCAGCATAAAGGAAGCAGTTTGTTAAACTGGTTTCATGTCCATTTACACTCCACAGACTTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR CCA 90 bp | TTAACAAATAGCAAAAAGACTATTGAAAAAGAGTCAACTATTTGCTaGCTGGCTTGCACAGGCTGGTTGGTTAGGAACCACGGTGAACAG | + |
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Preference number: 1 (lower is better) Translates to: LTNSKKTIEKESTIC*LACTGWLVRNHGEQ Trigger: CTGTTCACCGTGGTTCCTAACCAACCAGCCTGTGCAAGCCAGCCAGCAAATAGTTGACTCTTTTTCAATAGTCTTTTTGCTATTTGTTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR-3UTR TCA 90 bp | AGGAGAGCCAGGACTGCCGAACCTCCCGGCTTCTCGGAATTCGGTGAAGGTGGTGACATAATGCCTTGGTaGATAGGCATTGGACAAGCT | + |
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Preference number: 2 (lower is better) Translates to: RRARTAEPPGFSEFGEGGDIMPW*IGIGQA Trigger: AGCTTGTCCAATGCCTATTCACCAAGGCATTATGTC...ACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR-3UTR CCA 90 bp | ATATTAAAATACAGTCTGGATCCAGGCCAACAACACATCAAGCAGACTGAAGAACCCCCTCTCTCCACGTaGCCAGGGCTGGCCTCTCTC | + |
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Preference number: 2 (lower is better) Translates to: ILKYSLDPGQQHIKQTEEPPLST*PGLASL Trigger: GAGAGAGGCCAGCCCTGGCCACGTGGAGAGAGGGGG...TTCTTCAGTCTGCTTGATGTGTTGTTGGCCTGGATCCAGACTGTATTTTAATAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR-3UTR TCA 90 bp | ATATTAAAATACAGTCTGGATCCAGGCCAACAACACATCAAGCAGACTGAAGAATCCTCCCTCGCCTCCTaGGAGAGGGATCACACTGAT | + |
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Preference number: 2 (lower is better) Translates to: ILKYSLDPGQQHIKQTEESSLAS*ERDHTD Trigger: ATCAGTGTGATCCCTCTCTCAGGAGGCGAGGGAGGA...TTCTTCAGTCTGCTTGATGTGTTGTTGGCCTGGATCCAGACTGTATTTTAATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR-3UTR GCA 90 bp | GTAAAGCCTGACAAGTCTGAACAGGACCAAAGGGATGCCTTGCTCTTAAGCAACTACCTGCCTCCAACCTaGCTTATCCTGTACTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: VKPDKSEQDQRDALLLSNYLPPT*LILYFL Trigger: AAGAAAGTACAGGATAAGGCAGGTTGGAGGCAGGTA...GTTGCTTAAGAGCAAGGCATCCCTTTGGTCCTGTTCAGACTTGTCAGGCTTTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR-3UTR CCA 90 bp | TTAGGAACCACGGTGAACAGCCACAAGCATCAGTTTAAAACACTATTAGCATTTTCCTCTAAAAAGCCCTaGCTCCCTGACAAATGGATG | + |
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Preference number: 2 (lower is better) Translates to: LGTTVNSHKHQFKTLLAFSSKKP*LPDKWM Trigger: CATCCATTTGTCAGGGAGCCAGGGCTTTTTAGAGGA...AAATGCTAATAGTGTTTTAAACTGATGCTTGTGGCTGTTCACCGTGGTTCCTAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR-3UTR TCA 90 bp | TGCCAATATTTTAACCAAACAGATATTAAAATACAGTCTGGATCCAGGCCAACAATGCTTCCTTTAGGCTaGGATAGCTCATGCTTCCTT | + |
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Preference number: 2 (lower is better) Translates to: CQYFNQTDIKIQSGSRPTMLPLG*DSSCFL Trigger: AAGGAAGCATGAGCTATCTCAGCCTAAAGGAAGCAT...TGTTGGCCTGGATCCAGACTGTATTTTAATATCTGTTTGGTTAAAATATTGGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR-3UTR TCA 90 bp | AACAGCCACAAGCATCAGTTTAAAACACTATTAGCATTTATCGCTATAAGAGGAAGGGCGAGGACAAACTaGGTTCAAACTAAAACTAGA | + |
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Preference number: 2 (lower is better) Translates to: NSHKHQFKTLLAFIAIRGRARTN*VQTKTR Trigger: TCTAGTTTTAGTTTGAACTCAGTTTGTCCTCGCCCT...TCCTCTTATAGCGATAAATGCTAATAGTGTTTTAAACTGATGCTTGTGGCTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR-3UTR CCA 90 bp | TGCCAATATTTTAACCAAACAGATATTAAAATACAGTCTGGATCCAGGCCAACAAGATCTGGAAGTCTGTaGAGTGTAAATGGACATGAA | + |
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Preference number: 2 (lower is better) Translates to: CQYFNQTDIKIQSGSRPTRSGSL*SVNGHE Trigger: TTCATGTCCATTTACACTCCACAGACTTCCAGATCT...TGTTGGCCTGGATCCAGACTGTATTTTAATATCTGTTTGGTTAAAATATTGGCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR TCA 72 bp | CAGGACTGCCGAACCTCCCGGCTTCTCGGAATTCGGTaGAGGTGGTACTTGGGGTATTCAGTAGTAGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: QDCRTSRLLGIR*RWYLGYSVVES Trigger: TGACTCTACTACTGAATACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR CCA 72 bp | AGTCAACTATTTGCTGGCTGGCTTGCACAGGCTGGTTaGTTAGGAACCACGGTGAACAGCCACAAGCATCAG | + |
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Preference number: 3 (lower is better) Translates to: SQLFAGWLAQAG*LGTTVNSHKHQ Trigger: CTGATGCTTGTGGCTGTTCACCGTGGTTCCTAACCAACCAGCCTGTGCAAGCCAGCCAGCAAATAGTTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR CCA 72 bp | AAAGAGTCAACTATTTGCTGGCTGGCTTGCACAGGCTaGTTGGTTAGGAACCACGGTGAACAGCCACAAGCA | + |
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Preference number: 3 (lower is better) Translates to: KESTICWLACTG*LVRNHGEQPQA Trigger: TGCTTGTGGCTGTTCACCGTGGTTCCTAACCAACCAGCCTGTGCAAGCCAGCCAGCAAATAGTTGACTCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR TCA 72 bp | CATTTCATCAGACTCAGCAATGACATAATGCCTTGGTaGATAGGCATTGGACAAGCTTCCAACCAGCCTCAA | + |
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Preference number: 3 (lower is better) Translates to: HFIRLSNDIMPW*IGIGQASNQPQ Trigger: TTGAGGCTGGTTGGAAGCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR CCA 72 bp | GAGTCATTCTGGGCTCGAGAGAGTTCTTCAAGAGAATaGATTTTCTTGGCACTCATTTCATCAGACTCAGCA | + |
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Preference number: 3 (lower is better) Translates to: ESFWARESSSRE*IFLALISSDSA Trigger: TGCTGAGTCTGATGAAATGAGTGCCAAGAAAATCCATTCTCTTGAAGAACTCTCTCGAGCCCAGAATGACTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR CCA 72 bp | AGGTGGTACTTGGGGTATTCAGTAGTAGAGTCATTCTaGGCTCGAGAGAGTTCTTCAAGAGAATGGATTTTC | + |
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Preference number: 3 (lower is better) Translates to: RWYLGYSVVESF*ARESSSREWIF Trigger: GAAAATCCATTCTCTTGAAGAACTCTCTCGAGCCCAGAATGACTCTACTACTGAATACCCCAAGTACCACCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR TCA 72 bp | CAGTCTGGATCCAGGCCAACAACACATCAAGCAGACTaGAGAATAAAGAAAGACTCTTGTTTACAGTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: QSGSRPTTHQAD*RIKKDSCLQSE Trigger: CTCTGACTGTAAACAAGAGTCTTTCTTTATTCTTCAGTCTGCTTGATGTGTTGTTGGCCTGGATCCAGACTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR TCA 72 bp | GGATTTTCTTGGCACTCATTTCATCAGACTCAGCAATaGCATAATGCCTTGGTGAATAGGCATTGGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: GFSWHSFHQTQQ*HNALVNRHWTS Trigger: GCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATGAGTGCCAAGAAAATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR TCA 72 bp | GCATTTATCGCTATAAGAGGAAGGGCGAGGACAAACTaGGTTCAAACTAAAACTAGAAAAGCAGATCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: AFIAIRGRARTN*VQTKTRKADLS Trigger: TGAGAGATCTGCTTTTCTAGTTTTAGTTTGAACTCAGTTTGTCCTCGCCCTTCCTCTTATAGCGATAAATGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| 3UTR CCA 72 bp | AAGACTCTTGTTTACAGTCAGAGATCTGGAAGTCTGTaGAGTGTAAATGGACATGAAACCAGTTTAACAAAC | + |
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Preference number: 3 (lower is better) Translates to: KTLVYSQRSGSL*SVNGHETSLTN Trigger: GTTTGTTAAACTGGTTTCATGTCCATTTACACTCCACAGACTTCCAGATCTCTGACTGTAAACAAGAGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS-3UTR GCA 90 bp | AAGCCTGACAAGTCTGAACAGGACCAAAGGGATGCCTTGCTCTTAAGCAACCCCGAGGAGAGCCAGGACTaGCGAACCTCCCGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KPDKSEQDQRDALLLSNPEESQD*RTSRLL Trigger: GAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTC...GGGGTTGCTTAAGAGCAAGGCATCCCTTTGGTCCTGTTCAGACTTGTCAGGCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS-3UTR TCA 90 bp | AAGCCTGACAAGTCTGAACAGGACCAAAGGGATGCCTTGCTCTTAAGCAACCCCTGGGCCACTGAACAATaGAGTAGTCGGAGAGGTGCC | + |
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Preference number: 4 (lower is better) Translates to: KPDKSEQDQRDALLLSNPWATEQ*SSRRGA Trigger: GGCACCTCTCCGACTACTTCATTGTTCAGTGGCCCA...GGGGTTGCTTAAGAGCAAGGCATCCCTTTGGTCCTGTTCAGACTTGTCAGGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS-3UTR GCA 90 bp | GCTCTCGACATAGACGATGATCACTTTCTTCACTCCAAGTATCCCAAGAAGCAGGAGGAGAGCCAGGACTaGCGAACCTCCCGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: ALDIDDDHFLHSKYPKKQEESQD*RTSRLL Trigger: GAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTC...CTGCTTCTTGGGATACTTGGAGTGAAGAAAGTGATCATCGTCTATGTCGAGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199554.2 |
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| 3UTR CAA 72 bp | GAGTCAACTATTTGCTGGCTGGCTTGCACAGGCTGGTaGGTTAGGAACCACGGTGAACAGCCACAAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: ESTICWLACTGW*VRNHGEQPQAS Trigger: TGATGCTTGTGGCTGTTCACCGTGGTTCCTAACCAACCAGCCTGTGCAAGCCAGCCAGCAAATAGTTGACTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| CDS-3UTR GCA 90 bp | ATAAAGTCTAGCATTCCTCTAAAAAGCCCTGGCTCCCTGACAAATGGATGCTGTGAGGAGAGCCAGGACTaGCGAACCTCCCGGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: IKSSIPLKSPGSLTNGCCEESQD*RTSRLL Trigger: GAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTC...ACAGCATCCATTTGTCAGGGAGCCAGGGCTTTTTAGAGGAATGCTAGACTTTAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| CDS-3UTR GCA 90 bp | GCCGAACCTCCCGGCTTCTCGGAATTCGGTGAAGGTGGTACTTGGGGTATTCAGCAGCTAGAATCAGAATaGTCAGCATTCAAAGGATGG | + |
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Preference number: 4 (lower is better) Translates to: AEPPGFSEFGEGGTWGIQQLESE*SAFKGW Trigger: CCATCCTTTGAATGCTGAGCATTCTGATTCTAGCTG...CTGAATACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198235.2 |
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| 3UTR CAA 72 bp | AAGCCTGACAAGTCTGAACAGGACCAAAGGGATGCCTaGCTCTTAAGCAACCCCCTTTTCCTTACTTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: KPDKSEQDQRDA*LLSNPLFLTSL Trigger: CAGGGAAGTAAGGAAAAGGGGGTTGCTTAAGAGCAAGGCATCCCTTTGGTCCTGTTCAGACTTGTCAGGCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS-3UTR TCA 90 bp | AGACTATTGAAAAAGAGTCAACTATTTGCTGGCTGGCTTGCACAGGCTGGTTGGGACATAATGCCTTGGTaGATAGGCATTGGACAAGCT | + |
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Preference number: 4 (lower is better) Translates to: RLLKKSQLFAGWLAQAGWDIMPW*IGIGQA Trigger: AGCTTGTCCAATGCCTATTCACCAAGGCATTATGTC...CCAACCAGCCTGTGCAAGCCAGCCAGCAAATAGTTGACTCTTTTTCAATAGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000198341.2 |
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| CDS-3UTR CCA 90 bp | AGCTGTAAGAGTCCCAAGAGAGCTTTTAAAGCTCTCACCTTTCTTACTCTCATCAGGGACGCATGTTCCTaGTCCATTACACAGCACCAA | + |
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Preference number: 4 (lower is better) Translates to: SCKSPKRAFKALTFLTLIRDACS*SITQHQ Trigger: TTGGTGCTGTGTAATGGACCAGGAACATGCGTCCCT...GATGAGAGTAAGAAAGGTGAGAGCTTTAAAAGCTCTCTTGGGACTCTTACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS-3UTR TCA 90 bp | TTAACCAAACAGATATTAAAATACAGTCTGGATCCAGGCCAACAACACATCAAGGACATAATGCCTTGGTaGATAGGCATTGGACAAGCT | + |
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Preference number: 4 (lower is better) Translates to: LTKQILKYSLDPGQQHIKDIMPW*IGIGQA Trigger: AGCTTGTCCAATGCCTATTCACCAAGGCATTATGTC...CTTGATGTGTTGTTGGCCTGGATCCAGACTGTATTTTAATATCTGTTTGGTTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| 3UTR CAA 72 bp | AACACATCAAGCAGACTGAAGAATAAAGAAAGACTCTaGTTTACAGTCAGAGATCTGGAAGTCTGTGGAGTG | + |
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Preference number: 4 (lower is better) Translates to: NTSSRLKNKERL*FTVRDLEVCGV Trigger: CACTCCACAGACTTCCAGATCTCTGACTGTAAACAAGAGTCTTTCTTTATTCTTCAGTCTGCTTGATGTGTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS TCA 90 bp | GAGGAGAGCCAGGACTGCCGAACCTCCCGGCTTCTCGGAATTCGGTaGAGGTGGTACTTGGGGTACGGATCCAGCCACGATCAAGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: EESQDCRTSRLLGIR*RWYLGYGSSHDQES Trigger: AGACTCTTGATCGTGGCTGGATCCGTACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTGGCTCTCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199554.2 |
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| CDS TCA 90 bp | GATCCAGCCACGATCAAGAGTCTGAGAGACTCTCGGGGAGTGACGTaGTGGGGCCCAAGCACGGTCCATAGTCGCTGGAATAGCAAGATC | + |
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Preference number: 5 (lower is better) Translates to: DPATIKSLRDSRGVT*WGPSTVHSRWNSKI Trigger: GATCTTGCTATTCCAGCGACTATGGACCGTGCTTGGGCCCCATCACGTCACTCCCCGAGAGTCTCTCAGACTCTTGATCGTGGCTGGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000039442.12 ENSMUST00000198235.2 ENSMUST00000198341.2 ENSMUST00000199554.2 |
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| CDS CCA 90 bp | TATCCCAAGAAGCAGGGCGGACACACAGATAGGGACGCATGTTCCTaGTCCATTACACAGCACCAAATCTGGCTTTATTCGGAGAACCAG | + |
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Preference number: 5 (lower is better) Translates to: YPKKQGGHTDRDACS*SITQHQIWLYSENQ Trigger: CTGGTTCTCCGAATAAAGCCAGATTTGGTGCTGTGTAATGGACCAGGAACATGCGTCCCTATCTGTGTGTCCGCCCTGCTTCTTGGGATA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS TCA 90 bp | CTTGGCACTCATTTCATCAGACTCAGCAATGACATAATGCCTTGGTaGATAGGCATTGGACAAGCTTCCAACCAGCCTCAAGATCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: LGTHFIRLSNDIMPW*IGIGQASNQPQDLS Trigger: ACTGAGATCTTGAGGCTGGTTGGAAGCTTGTCCAATGCCTATTCACCAAGGCATTATGTCATTGCTGAGTCTGATGAAATGAGTGCCAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039442.12 ENSMUST00000198341.2 |
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| CDS-3UTR CAA 90 bp | ATATTAAAATACAGTCTGGATCCAGGCCAACAACACATCAAGCAGACTGAAGAACCCAGGTACACAGACTaGGGGTACTTCTCCTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: ILKYSLDPGQQHIKQTEEPRYTD*GYFSLR Trigger: TCTCAAGGAGAAGTACCCCAAGTCTGTGTACCTGGG...TTCTTCAGTCTGCTTGATGTGTTGTTGGCCTGGATCCAGACTGTATTTTAATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS TCA 72 bp | CAGGACTGCCGAACCTCCCGGCTTCTCGGAATTCGGTaGAGGTGGTACTTGGGGTACGGATCCAGCCACGAT | + |
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Preference number: 6 (lower is better) Translates to: QDCRTSRLLGIR*RWYLGYGSSHD Trigger: ATCGTGGCTGGATCCGTACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGGTTCGGCAGTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199554.2 |
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| CDS TCA 72 bp | ACGATCAAGAGTCTGAGAGACTCTCGGGGAGTGACGTaGTGGGGCCCAAGCACGGTCCATAGTCGCTGGAAT | + |
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Preference number: 6 (lower is better) Translates to: TIKSLRDSRGVT*WGPSTVHSRWN Trigger: ATTCCAGCGACTATGGACCGTGCTTGGGCCCCATCACGTCACTCCCCGAGAGTCTCTCAGACTCTTGATCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000039442.12 ENSMUST00000198235.2 ENSMUST00000198341.2 ENSMUST00000199554.2 |
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| CDS CCA 72 bp | CCTCCCGGCTTCTCGGAATTCGGTGAAGGTGGTACTTaGGGTACGGATCCAGCCACGATCAAGAGTCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: PPGFSEFGEGGT*GTDPATIKSLR Trigger: TCTCAGACTCTTGATCGTGGCTGGATCCGTACCCCAAGTACCACCTTCACCGAATTCCGAGAAGCCGGGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199554.2 |
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| CDS CCA 72 bp | CATTGGACAAGCTTCCAACCAGCCTCAAGATCTCAGTaGTGTGTCCACCGGATCCAGCCACGATCAAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: HWTSFQPASRSQ*CVHRIQPRSRV Trigger: GACTCTTGATCGTGGCTGGATCCGGTGGACACACCACTGAGATCTTGAGGCTGGTTGGAAGCTTGTCCAATG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039442.12 ENSMUST00000198341.2 |
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| CDS CCA 72 bp | AAGCAGGGCGGACACACAGATAGGGACGCATGTTCCTaGTCCATTACACAGCACCAAATCTGGCTTTATTCG | + |
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Preference number: 6 (lower is better) Translates to: KQGGHTDRDACS*SITQHQIWLYS Trigger: CGAATAAAGCCAGATTTGGTGCTGTGTAATGGACCAGGAACATGCGTCCCTATCTGTGTGTCCGCCCTGCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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| CDS CCA 72 bp | GACGCATGTTCCTGGTCCATTACACAGCACCAAATCTaGCTTTATTCGGAGAACCAGTGGGAAGGAGAACCA | + |
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Preference number: 6 (lower is better) Translates to: DACSWSITQHQI*LYSENQWEGEP Trigger: TGGTTCTCCTTCCCACTGGTTCTCCGAATAAAGCCAGATTTGGTGCTGTGTAATGGACCAGGAACATGCGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039442.12 |
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