RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALG13 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041718

Ensembl transcript IDs: ENSMUST00000070801.11, ENSMUST00000123710.8, ENSMUST00000145724.7, ENSMUST00000149330.8, ENSMUST00000154827.8, ENSMUST00000197316.5, ENSMUST00000198039.5, ENSMUST00000238864.2

Found 270 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATAGGAATAAGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTaGAAGAGGAAACCCCGAAGCATCTCCTGCTTCAAGAGTAGCAGG +
Preference number: 1 (lower is better)
Translates to: IGIRRRRRRRWWWWW*KRKPRSISCFKSSR
Trigger: CCTGCTACTCTTGAAGCAGGAGATGCTTCGGGGTTTCCTCTTCCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCTTATTCCTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000198039.5
3UTR TCA 90 bp GTTGCTGCAGAATCTTGGCACTTCCCAGAAGCACAAGCAAGAGGCTaGCTGGCGCAGGACAAGACAGGACCCTGCAGGTACAATAAAAGA +
Preference number: 1 (lower is better)
Translates to: VAAESWHFPEAQARG*LAQDKTGPCRYNKR
Trigger: TCTTTTATTGTACCTGCAGGGTCCTGTCTTGTCCTGCGCCAGTCAGCCTCTTGCTTGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR CCA 90 bp CTGCAGAATCTTGGCACTTCCCAGAAGCACAAGCAAGAGGCTGACTaGCGCAGGACAAGACAGGACCCTGCAGGTACAATAAAAGAGATG +
Preference number: 1 (lower is better)
Translates to: LQNLGTSQKHKQEAD*RRTRQDPAGTIKEM
Trigger: CATCTCTTTTATTGTACCTGCAGGGTCCTGTCTTGTCCTGCGCCAGTCAGCCTCTTGCTTGTGCTTCTGGGAAGTGCCAAGATTCTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR CCA 90 bp GGAAAACACAGAATGCAGGTAAGAATAGGCAGTGGCCACAAGTACTaGAGCTTGTGTAGGCAGGTATCCGAAGCAGCTCAAGGTCTAGGC +
Preference number: 1 (lower is better)
Translates to: GKHRMQVRIGSGHKY*SLCRQVSEAAQGLG
Trigger: GCCTAGACCTTGAGCTGCTTCGGATACCTGCCTACACAAGCTCCAGTACTTGTGGCCACTGCCTATTCTTACCTGCATTCTGTGTTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR TCA 90 bp TGCAGCACTGGAACAGGCGGCAGCCTCTTCAGTTCTATCTTCGGTTaGACTCTTCTGATCACTACTGCCTTCTACACTTGCAGTCAAAGC +
Preference number: 1 (lower is better)
Translates to: CSTGTGGSLFSSIFG*TLLITTAFYTCSQS
Trigger: GCTTTGACTGCAAGTGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGAAGATAGAACTGAAGAGGCTGCCGCCTGTTCCAGTGCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 90 bp TTGACGGACTTTCTGGAACCTTTTGTCTTTCTGTCCCTTGCTTATTaGCTTCTGGTGTACTTGCAGCACTGGAACAGGCGGCAGCCTCTT +
Preference number: 1 (lower is better)
Translates to: LTDFLEPFVFLSLAY*LLVYLQHWNRRQPL
Trigger: AAGAGGCTGCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGTCCGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 90 bp AGCATCTTTGACGGACTTTCTGGAACCTTTTGTCTTTCTGTCCCTTaGTTATTGCCTTCTGGTGTACTTGCAGCACTGGAACAGGCGGCA +
Preference number: 1 (lower is better)
Translates to: SIFDGLSGTFCLSVP*LLPSGVLAALEQAA
Trigger: TGCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGTCCGTCAAAGATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 90 bp CAGCTGTCTGTGAGTAGTATAGTAGAGGGTCATGACCATAATGCATaGTGTGCTGAATCCTGGATGGAACAAGGGGATCTCCCCTGCTAT +
Preference number: 1 (lower is better)
Translates to: QLSVSSIVEGHDHNA*CAESWMEQGDLPCY
Trigger: ATAGCAGGGGAGATCCCCTTGTTCCATCCAGGATTCAGCACAGCATGCATTATGGTCATGACCCTCTACTATACTACTCACAGACAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 90 bp CACCTGAGGAGCACTTTGGTCTACGAGGGGTTGCTCAGTACAATCTaGATAACTCTCTCCATGAACCTGTTCTTGTTGTTGCTGCTGTTG +
Preference number: 1 (lower is better)
Translates to: HLRSTLVYEGLLSTI*ITLSMNLFLLLLLL
Trigger: CAACAGCAGCAACAACAAGAACAGGTTCATGGAGAGAGTTATCCAGATTGTACTGAGCAACCCCTCGTAGACCAAAGTGCTCCTCAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 90 bp GGCAAGAGGCATCCTTGGCAACCACCTTTCGAAACAGCCCTAAACTaGCTAAATATTCATCCATTGATGCCTCATTCAAAGACTTCTGGC +
Preference number: 1 (lower is better)
Translates to: GKRHPWQPPFETALN*LNIHPLMPHSKTSG
Trigger: GCCAGAAGTCTTTGAATGAGGCATCAATGGATGAATATTTAGGCAGTTTAGGGCTGTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 90 bp CAACAAAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTaGTCCATGAGGGAGAGGTACAGCATCAGCAATGGGAAAAGTATC +
Preference number: 1 (lower is better)
Translates to: QQRRPIGICHYWIVD*SMRERYSISNGKSI
Trigger: GATACTTTTCCCATTGCTGATGCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 90 bp GCATTCCAGGAAGGAAGAAGTGCCACTTGGTTGACTGGTCTTACATaGGCCAGCGGAATTGAATGCCTTTCTGCAAATTCCTCAATGAAA +
Preference number: 1 (lower is better)
Translates to: AFQEGRSATWLTGLT*ASGIECLSANSSMK
Trigger: TTTCATTGAGGAATTTGCAGAAAGGCATTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 90 bp GGAATCAAATCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTaGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCATCAGCAAT +
Preference number: 1 (lower is better)
Translates to: GIKSQQRRPIGICHY*IVDCSMRERYSISN
Trigger: ATTGCTGATGCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGATTTGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 90 bp ACCTTGTGCAGGTGGAGGTACAAAGCCAGGTTGTATGGCATTCTGTaGAGAAATATCAGAGGTACGAAGAGCTTCATTATCTCCTGCACA +
Preference number: 1 (lower is better)
Translates to: TLCRWRYKARLYGIL*RNIRGTKSFIISCT
Trigger: TGTGCAGGAGATAATGAAGCTCTTCGTACCTCTGATATTTCTTCACAGAATGCCATACAACCTGGCTTTGTACCTCCACCTGCACAAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 90 bp ATGAGGGAGAGGTACAGCATCAGCAATGGGAAAAGTATCATTTGTTaGTACATCTGCCTGTGTGCCATCCTCTCTCACCACATCACTGTA +
Preference number: 1 (lower is better)
Translates to: MRERYSISNGKSIIC*YICLCAILSHHITV
Trigger: TACAGTGATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGCTGTACCTCTCCCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 90 bp GTCTTGAGGCACAGAAGATGGTCCACTGTCCTGAAGAGACAGGTTTaGTGTAGATACAGTTGTGGTATACACACTAGAAGTTTCATAGCC +
Preference number: 1 (lower is better)
Translates to: VLRHRRWSTVLKRQV*CRYSCGIHTRSFIA
Trigger: GGCTATGAAACTTCTAGTGTGTATACCACAACTGTATCTACAGCAAACCTGTCTCTTCAGGACAGTGGACCATCTTCTGTGCCTCAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 90 bp AATGCATGCTGTGCTGAATCCTGGATGGAACAAGGGGATCTCCCCTaGTATAAGCCATGGTCATATAAATCTCTTTCCCTCGAAATTTCT +
Preference number: 1 (lower is better)
Translates to: NACCAESWMEQGDLP*YKPWSYKSLSLEIS
Trigger: AGAAATTTCGAGGGAAAGAGATTTATATGACCATGGCTTATAGCAGGGGAGATCCCCTTGTTCCATCCAGGATTCAGCACAGCATGCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 90 bp CCCAGCCCTTGTCTATTTTACAGGAACAAATATTACCAGGAATGGTaGCATGTGCCTGTAATCCCAGGACTTGAAGGATCACAAGTTCAA +
Preference number: 1 (lower is better)
Translates to: PSPCLFYRNKYYQEW*HVPVIPGLEGSQVQ
Trigger: TTGAACTTGTGATCCTTCAAGTCCTGGGATTACAGGCACATGCCACCATTCCTGGTAATATTTGTTCCTGTAAAATAGACAAGGGCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR TCA 90 bp ACATGCTGCATTAACTGGATGCCACATAGCAATACTGGAATAATCTaGTGCAACAGGAACATAGGAATCAAATCCCAACAAAGGAGACCC +
Preference number: 1 (lower is better)
Translates to: TCCINWMPHSNTGII*CNRNIGIKSQQRRP
Trigger: GGGTCTCCTTTGTTGGGATTTGATTCCTATGTTCCTGTTGCATCAGATTATTCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 90 bp CCATGGGATGCCAGTAGTTGTGATGATAGCACTGCAATCCCAGATTaGAATAGTACTGTAAAACTTTTGTATCTGGACTACCTTGTGCAG +
Preference number: 1 (lower is better)
Translates to: PWDASSCDDSTAIPD*NSTVKLLYLDYLVQ
Trigger: CTGCACAAGGTAGTCCAGATACAAAAGTTTTACAGTACTATTTCAATCTGGGATTGCAGTGCTATCATCACAACTACTGGCATCCCATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000197316.5
3UTR CCA 90 bp AAACTGCCTAAATATTCATCCATTGATGCCTCATTCAAAGACTTCTaGCCGCAGTACTTTTTCCATCCTTTTTGCATTGTGCATGGGATG +
Preference number: 1 (lower is better)
Translates to: KLPKYSSIDASFKDF*PQYFFHPFCIVHGM
Trigger: CATCCCATGCACAATGCAAAAAGGATGGAAAAAGTACTGCGGCCAGAAGTCTTTGAATGAGGCATCAATGGATGAATATTTAGGCAGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CCA 90 bp CATATCTGTCATAACTATTTCAGGGAAATAGCCTCCAGTTATAGTTaGATAACCTCTTCCATTACGAATTGGTATGGCATTCCAGGAAGG +
Preference number: 1 (lower is better)
Translates to: HICHNYFREIASSYS*ITSSITNWYGIPGR
Trigger: CCTTCCTGGAATGCCATACCAATTCGTAATGGAAGAGGTTATCCAACTATAACTGGAGGCTATTTCCCTGAAATAGTTATGACAGATATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 90 bp CTTTTTACCTTGCTTGGTAACAGGTATTTTTACCATTCACTGTTGTaGATACTAGGCTGCTTAGTCCAATGTCTTCCAGGGAATTCTATC +
Preference number: 1 (lower is better)
Translates to: LFTLLGNRYFYHSLL*ILGCLVQCLPGNSI
Trigger: GATAGAATTCCCTGGAAGACATTGGACTAAGCAGCCTAGTATTCACAACAGTGAATGGTAAAAATACCTGTTACCAAGCAAGGTAAAAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR CCA 90 bp TTCTGGAACCTTGTCTTCAAAGCCATTATCTGTGACTTGAGTTGGTaGCTTTCCAGGATAACGATAAATAATGAAATCTCGATTATAAAT +
Preference number: 1 (lower is better)
Translates to: FWNLVFKAIICDLSW*LSRITINNEISIIN
Trigger: ATTTATAATCGAGATTTCATTATTTATCGTTATCCTGGAAAGCCACCAACTCAAGTCACAGATAATGGCTTTGAAGACAAGGTTCCAGAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp CTGCGCAGAAGCACCACATGCTGCATTAACTGGATGCCACATAGCAATACTGGAGCCTTCTGGTGTACTTaGAGCACTGGAACAGGCGGC +
Preference number: 2 (lower is better)
Translates to: LRRSTTCCINWMPHSNTGAFWCT*STGTGG
Trigger: GCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGC...TCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CCA 90 bp CTCTCACCACATCACTGTACACCTGAGGAGCACTTTGGTCTACGAGGGGTTGCTGCTTTTAGTTCCAGCTaGCCAGCACTCTCCTTGGGA +
Preference number: 2 (lower is better)
Translates to: LSPHHCTPEEHFGLRGVAAFSSS*PALSLG
Trigger: TCCCAAGGAGAGTGCTGGCCAGCTGGAACTAAAAGC...AGCAACCCCTCGTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR TCA 90 bp CTCTCACCACATCACTGTACACCTGAGGAGCACTTTGGTCTACGAGGGGTTGCTGATGGTCCACTGTCCTaGAGAGACAGGTTTGCTGTA +
Preference number: 2 (lower is better)
Translates to: LSPHHCTPEEHFGLRGVADGPLS*RDRFAV
Trigger: TACAGCAAACCTGTCTCTTCAGGACAGTGGACCATC...AGCAACCCCTCGTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp ATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCTGCTGCTCCTGCTGCTaGAGGCTCAAGATAGGCTGG +
Preference number: 2 (lower is better)
Translates to: IGICHYWIVDCSMRERYSCCSCC*RLKIGW
Trigger: CCAGCCTATCTTGAGCCTTCAGCAGCAGGAGCAGCA...GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTGTTGCGGCGGCGGCTaGTGCTGTTGCGGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYCCGGG*CCCGCC
Trigger: ACAGCAGCCGCAACAGCAGCAGCCGCCGCCGCAACA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp AGAAGATGGTCCACTGTCCTGAAGAGACAGGTTTGCTGTAGATACAGTTGTGGTGGCCAGCACTCTCCTTaGGATCTCCCAACCGTTCCA +
Preference number: 2 (lower is better)
Translates to: RRWSTVLKRQVCCRYSCGGQHSP*DLPTVP
Trigger: TGGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCC...ACCACAACTGTATCTACAGCAAACCTGTCTCTTCAGGACAGTGGACCATCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CAA 90 bp TTTGACGGACTTTCTGGAACCTTTTGTCTTTCTGTCCCTTGCTTATaGCCTTCTGGTGTACTTGCAGCACTGGAACAGGCGGCAGCCTCT +
Preference number: 2 (lower is better)
Translates to: FDGLSGTFCLSVPCL*PSGVLAALEQAAAS
Trigger: AGAGGCTGCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGTCCGTCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR GCA 90 bp AAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGATCTGGCAGCACTTTCTaGCTGAGCCAGAGCAAAACC +
Preference number: 2 (lower is better)
Translates to: KETHRDLSLLDSRLLHEGSGSTF*LSQSKT
Trigger: GGTTTTGCTCTGGCTCAGGCAGAAAGTGCTGCCAGA...TCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp TTTTGTATCTTGGGGCAGATCACTTCCACTCGGATCATAGGAATAAGGCGGCGGACTACCTTGTGCAGGTaGAGGTACAAAGCCAGGTTG +
Preference number: 2 (lower is better)
Translates to: FCILGQITSTRIIGIRRRTTLCR*RYKARL
Trigger: CAACCTGGCTTTGTACCTCCACCTGCACAAGGTAGT...CCGCCGCCTTATTCCTATGATCCGAGTGGAAGTGATCTGCCCCAAGATACAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp AAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGACAAAGGTGGTTTGCATaGGTTATAGCCCTGCCTTGC +
Preference number: 2 (lower is better)
Translates to: KETHRDLSLLDSRLLHEGQRWFA*VIALPC
Trigger: GCAAGGCAGGGCTATAACTCATGCAAACCACCTTTG...TCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp CTGCGCAGAAGCACCACATGCTGCATTAACTGGATGCCACATAGCAATACTGGAACAGTTCGGTATGACTaGAACTGGAACATGGCTTGC +
Preference number: 2 (lower is better)
Translates to: LRRSTTCCINWMPHSNTGTVRYD*NWNMAC
Trigger: GCAAGCCATGTTCCAGTTCCAGTCATACCGAACTGT...TCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CAA 90 bp CTCCATGAGGGAGAGGTACAGCATCAGCAATGGGAAAAGTATCATTaGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATCAC +
Preference number: 2 (lower is better)
Translates to: LHEGEVQHQQWEKYH*LIHLPVCHPLSPHH
Trigger: GTGATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGCTGTACCTCTCCCTCATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp GCATTCCAGGAAGGAAGAAGTGCCACTTGGTTGACTGGTCTTACATGGGCCAGCATTTCGATAGATTTCTaGATCCAGAGCTTTCAGCAC +
Preference number: 2 (lower is better)
Translates to: AFQEGRSATWLTGLTWASISIDF*IQSFQH
Trigger: GTGCTGAAAGCTCTGGATCCAGAAATCTATCGAAAT...GCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACAGTGAGACGAATCCCTaGGCATCCCATATCCCCGAC +
Preference number: 2 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYSETNP*ASHIPD
Trigger: GTCGGGGATATGGGATGCCCAGGGATTCGTCTCACT...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp AAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGACAAAGCCATTATCTGTaGCTTGAGTTGGTGGCTTTC +
Preference number: 2 (lower is better)
Translates to: KETHRDLSLLDSRLLHEGQSHYL*LELVAF
Trigger: GAAAGCCACCAACTCAAGTCACAGATAATGGCTTTG...TCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp CTACCTTGTGCAGGTGGAGGTACAAAGCCAGGTTGTATGGCATTCTGTGAAGAATCGGTTGAACTCTTCTaGTCACTACTGCCTTCTACA +
Preference number: 2 (lower is better)
Translates to: LPCAGGGTKPGCMAFCEESVELF*SLLPST
Trigger: TGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGA...TTCTTCACAGAATGCCATACAACCTGGCTTTGTACCTCCACCTGCACAAGGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR TCA 90 bp ATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCAGACACAAGCTCTCCTaGTCTGTAAATGATGGATCT +
Preference number: 2 (lower is better)
Translates to: IGICHYWIVDCSMRERYSRHKLS*SVNDGS
Trigger: AGATCCATCATTTACAGATCAGGAGAGCTTGTGTCT...GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR TCA 90 bp GCATCAGCAATGGGAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCCCATTATCTGTGACTTaGGTTGGTGGCTTTCCAGGA +
Preference number: 2 (lower is better)
Translates to: ASAMGKVSFVDTSACVPSPLSVT*VGGFPG
Trigger: TCCTGGAAAGCCACCAACTCAAGTCACAGATAATGG...GGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp TGTGCCATCCTCTCTCACCACATCACTGTACACCTGAGGAGCACTTTGGTCTACACCTTGTCTTTGAGATaGATGTTGAGGGTAAAAATG +
Preference number: 2 (lower is better)
Translates to: CAILSHHITVHLRSTLVYTLSLR*MLRVKM
Trigger: CATTTTTACCCTCAACATTCATCTCAAAGACAAGGT...GTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAGAGGATGGCACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACGATGGTCCACTGTCCTaGAGAGACAGGTTTGCTGTA +
Preference number: 2 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYDGPLS*RDRFAV
Trigger: TACAGCAAACCTGTCTCTTCAGGACAGTGGACCATC...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGTGTTGCTGCTGTTGTTaGGGCGGCGGCTGCTGCTGT +
Preference number: 2 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLCCCCC*GGGCCC
Trigger: ACAGCAGCAGCCGCCGCCGCAACAACAGCAGCAACA...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp CCAGATATTTCTCAAAAGATCCCTCCACATAAGACTCAAAAGCTTGTTGGTTTTGGCCAGCACTCTCCTTaGGATCTCCCAACCGTTCCA +
Preference number: 2 (lower is better)
Translates to: PDISQKIPPHKTQKLVGFGQHSP*DLPTVP
Trigger: TGGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCC...AAAACCAACAAGCTTTTGAGTCTTATGTGGAGGGATCTTTTGAGAAATATCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR TCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACGGGAAACAGCATCTTTaGCGGACTTTCTGGAACCTT +
Preference number: 2 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYGKQHL*RTFWNL
Trigger: AAGGTTCCAGAAAGTCCGTCAAAGATGCTGTTTCCC...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATATGGGCCAGCGGAATTaGATGCCTTTCTGCAAATTC +
Preference number: 2 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHMGQRN*MPFCKF
Trigger: GAATTTGCAGAAAGGCATTCAATTCCGCTGGCCCAT...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATTGCAACACAGTAGCCTaGAGTAGCAGGAACCATTGT +
Preference number: 2 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHCNTVA*SSRNHC
Trigger: ACAATGGTTCCTGCTACTTCAGGCTACTGTGTTGCA...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp CAAGGGGATCTCCCCTGCTATAAGCCATGGTCATATAAATCTCTTTCCCTCGAAACTGCCTTCTACACTTaGAGTCAAAGCATGGTGTTT +
Preference number: 2 (lower is better)
Translates to: QGDLPCYKPWSYKSLSLETAFYT*SQSMVF
Trigger: AAACACCATGCTTTGACTGCAAGTGTAGAAGGCAGT...TTCGAGGGAAAGAGATTTATATGACCATGGCTTATAGCAGGGGAGATCCCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR GCA 90 bp GTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATCACTGAATTCAAAGGTGGTTTaGATGAGTTATAGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: VSFVDTSACVPSSLTTSLNSKVV*MSYSPA
Trigger: GGCAGGGCTATAACTCATGCAAACCACCTTTGAATT...CAGTGATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp TGCCTAAATATTCATCCATTGATGCCTCATTCAAAGACTTCTGGCCGCAGTACTGTTGCTGCAGAATCTTaGCACTTCCCAGAAGCACAA +
Preference number: 2 (lower is better)
Translates to: CLNIHPLMPHSKTSGRSTVAAES*HFPEAQ
Trigger: TTGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAAC...AGTACTGCGGCCAGAAGTCTTTGAATGAGGCATCAATGGATGAATATTTAGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR-3UTR CCA 90 bp CAAGGGGATCTCCCCTGCTATAAGCCATGGTCATATAAATCTCTTTCCCTCGAAGCCTCCAGTTATAGTTaGATAACCTCTTCCATTACG +
Preference number: 2 (lower is better)
Translates to: QGDLPCYKPWSYKSLSLEASSYS*ITSSIT
Trigger: CGTAATGGAAGAGGTTATCCAACTATAACTGGAGGC...TTCGAGGGAAAGAGATTTATATGACCATGGCTTATAGCAGGGGAGATCCCCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CAA 90 bp AAATGTAACAGTTTCTTCCACTCCATTCTCTGGAGCAAAACCATATaGGCATCCCTTATTCATGCAATGCATCTGACGATGGCTACGCCT +
Preference number: 2 (lower is better)
Translates to: KCNSFFHSILWSKTI*ASLIHAMHLTMATP
Trigger: AGGCGTAGCCATCGTCAGATGCATTGCATGAATAAGGGATGCCAATATGGTTTTGCTCCAGAGAATGGAGTGGAAGAAACTGTTACATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAGCAGCACTTTCTGCCTaGGCCAGAGCAAAACCCAAC +
Preference number: 2 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITAALSA*ARAKPN
Trigger: GTTGGGTTTTGCTCTGGCTCAGGCAGAAAGTGCTGC...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp ATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCGAAACAGCCCTAAACTaGCTAAATATTCATCCATTG +
Preference number: 2 (lower is better)
Translates to: IGICHYWIVDCSMRERYSETALN*LNIHPL
Trigger: CAATGGATGAATATTTAGGCAGTTTAGGGCTGTTTC...GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACCATGACCATAATGCATaGTGTGCTGAATCCTGGATG +
Preference number: 2 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYHDHNA*CAESWM
Trigger: CATCCAGGATTCAGCACAGCATGCATTATGGTCATG...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp AGAAGATGGTCCACTGTCCTGAAGAGACAGGTTTGCTGTAGATACAGTTGTGGTATTTCGATAGATTTCTaGATCCAGAGCTTTCAGCAC +
Preference number: 2 (lower is better)
Translates to: RRWSTVLKRQVCCRYSCGISIDF*IQSFQH
Trigger: GTGCTGAAAGCTCTGGATCCAGAAATCTATCGAAAT...ACCACAACTGTATCTACAGCAAACCTGTCTCTTCAGGACAGTGGACCATCTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCTGCACAGTTCGGTATaGCTGGAACTGGAACATGGC +
Preference number: 2 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLLHSSV*LELEHG
Trigger: GCCATGTTCCAGTTCCAGTCATACCGAACTGTGCAG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp CCTAAACTGCCTAAATATTCATCCATTGATGCCTCATTCAAAGACTTCTGGCCGGACAAGACAGGACCCTaGAGGTACAATAAAAGAGAT +
Preference number: 2 (lower is better)
Translates to: PKLPKYSSIDASFKDFWPDKTGP*RYNKRD
Trigger: ATCTCTTTTATTGTACCTGCAGGGTCCTGTCTTGTC...CGGCCAGAAGTCTTTGAATGAGGCATCAATGGATGAATATTTAGGCAGTTTAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR-3UTR GCA 90 bp CAGCTGTCTGTGAGTAGTATAGTAGAGGGTCATGACCATAATGCATGCTGTGCTGAAACAGCCCTAAACTaGCTAAATATTCATCCATTG +
Preference number: 2 (lower is better)
Translates to: QLSVSSIVEGHDHNACCAETALN*LNIHPL
Trigger: CAATGGATGAATATTTAGGCAGTTTAGGGCTGTTTC...AGCACAGCATGCATTATGGTCATGACCCTCTACTATACTACTCACAGACAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CCA 90 bp AAGATCCCTCCACATAAGACTCAAAAGCTTGTTGGTTTTCCTTCATATATGAGAGGCAAGAGGCATCCTTaGCAACCACCTTTCGAAACA +
Preference number: 2 (lower is better)
Translates to: KIPPHKTQKLVGFPSYMRGKRHP*QPPFET
Trigger: TGTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCC...TCTCATATATGAAGGAAAACCAACAAGCTTTTGAGTCTTATGTGGAGGGATCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CCA 90 bp AAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGACTCAAAAGCTTGTTaGTTTTCCTTCATATATGAG +
Preference number: 2 (lower is better)
Translates to: KETHRDLSLLDSRLLHEGDSKAC*FSFIYE
Trigger: CTCATATATGAAGGAAAACCAACAAGCTTTTGAGTC...TCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CCA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATTTCCACTCCATTCTCTaGAGCAAAACCATATTGGCA +
Preference number: 2 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHFHSIL*SKTILA
Trigger: TGCCAATATGGTTTTGCTCCAGAGAATGGAGTGGAA...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp CTTCATGTTCATATCTGTCATAACTATTTCAGGGAAATAGCCTCCAGTTATAGTCCAGGAAGGAAGAAGTaGCACTTGGTTGACTGGTCT +
Preference number: 2 (lower is better)
Translates to: LHVHICHNYFREIASSYSPGRKK*HLVDWS
Trigger: AGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGG...ACTATAACTGGAGGCTATTTCCCTGAAATAGTTATGACAGATATGAACATGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp AATCAAATCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGAAATTCAAAGGTGGTTTaGATGAGTTATAGCCCTGCC +
Preference number: 2 (lower is better)
Translates to: NQIPTKETHRDLSLLDSRNSKVV*MSYSPA
Trigger: GGCAGGGCTATAACTCATGCAAACCACCTTTGAATT...TCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGATTTGATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp AATAAAGATAATCTCCATGATATCCTCCATTATCACAGTGGTCATTACTGTCTCGGGAAACAGCATCTTTaGCGGACTTTCTGGAACCTT +
Preference number: 2 (lower is better)
Translates to: NKDNLHDILHYHSGHYCLGKQHL*RTFWNL
Trigger: AAGGTTCCAGAAAGTCCGTCAAAGATGCTGTTTCCC...GAGACAGTAATGACCACTGTGATAATGGAGGATATCATGGAGATTATCTTTATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp TTCTTCCACTCCATTCTCTGGAGCAAAACCATATTGGCATCCCTTATTCATGCAATAATATTTTCCACCTaGTTCCATGCAAACCTGACA +
Preference number: 2 (lower is better)
Translates to: FFHSILWSKTILASLIHAIIFST*FHANLT
Trigger: TGTCAGGTTTGCATGGAATCAGGTGGAAAATATTAT...TGCATGAATAAGGGATGCCAATATGGTTTTGCTCCAGAGAATGGAGTGGAAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp ATACAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTTGTCTATTTTACAGGAGATACACCTGCTTCTaGCTCCCAAAGGTTAGAATT +
Preference number: 2 (lower is better)
Translates to: IQVLYSLNNFPSPCLFYRRYTCF*LPKVRI
Trigger: AATTCTAACCTTTGGGAGCCAGAAGCAGGTGTATCT...CCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR-3UTR CCA 90 bp CATTCTACCTATATATCTCCATGTACTCATGTGAATATAGCCATGGATCCTATAAAGACAGAGTTTCTCTaGGTAGAAAAGGATGGCCCT +
Preference number: 2 (lower is better)
Translates to: HSTYISPCTHVNIAMDPIKTEFL*VEKDGP
Trigger: AGGGCCATCCTTTTCTACCCAGAGAAACTCTGTCTT...TATAGGATCCATGGCTATATTCACATGAGTACATGGAGATATATAGGTAGAATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR-3UTR CCA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATGACTCAAAAGCTTGTTaGTTTTCCTTCATATATGAG +
Preference number: 2 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHDSKAC*FSFIYE
Trigger: CTCATATATGAAGGAAAACCAACAAGCTTTTGAGTC...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAGCTTGCCCAAGAAACTaGAATTGCTGCAGAATTTTC +
Preference number: 2 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITACPRN*NCCRIF
Trigger: GAAAATTCTGCAGCAATTGCAGTTTCTTGGGCAAGC...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR TCA 90 bp TCACATTCTACCTATATATCTCCATGTACTCATGTGAATATAGCCATGGATCCTTTTTATCATATCCCATaGACTGGACTTAGGGGTATT +
Preference number: 2 (lower is better)
Translates to: SHSTYISPCTHVNIAMDPFYHIP*TGLRGI
Trigger: AATACCCCTAAGTCCAGTTCATGGGATATGATAAAA...AGGATCCATGGCTATATTCACATGAGTACATGGAGATATATAGGTAGAATGTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR-3UTR TCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACATCCCTCGAAATTTCTTaGACATCTTCTTTCGTTGCT +
Preference number: 2 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITSLEIS*TSSFVA
Trigger: AGCAACGAAAGAAGATGTTCAAGAAATTTCGAGGGA...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CCA 90 bp TTCTACCTATATATCTCCATGTACTCATGTGAATATAGCCATGGATCCTATAGTAAATATTACCAGGAATaGTGGCATGTGCCTGTAATC +
Preference number: 2 (lower is better)
Translates to: FYLYISMYSCEYSHGSYSKYYQE*WHVPVI
Trigger: GATTACAGGCACATGCCACCATTCCTGGTAATATTT...ACTATAGGATCCATGGCTATATTCACATGAGTACATGGAGATATATAGGTAGAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR-3UTR CCA 90 bp CTTCATGTTCATATCTGTCATAACTATTTCAGGGAAATAGCCTCCAGTTATAGTCATTACGAATTGGTATaGCATTCCAGGAAGGAAGAA +
Preference number: 2 (lower is better)
Translates to: LHVHICHNYFREIASSYSHYELV*HSRKEE
Trigger: TTCTTCCTTCCTGGAATGCCATACCAATTCGTAATG...ACTATAACTGGAGGCTATTTCCCTGAAATAGTTATGACAGATATGAACATGAAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGTTTTTCCATCCTTTTTaGATTGTGCATGGGATGATG +
Preference number: 2 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLFFHPF*IVHGMM
Trigger: CATCATCCCATGCACAATGCAAAAAGGATGGAAAAA...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CCA 72 bp AGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGTGGTaGAAGAGGAAACCCCGAAGCATCTCCTGCTTCAAG +
Preference number: 3 (lower is better)
Translates to: RRRRRRRWWWWW*KRKPRSISCFK
Trigger: CTTGAAGCAGGAGATGCTTCGGGGTTTCCTCTTCCACCACCACCACCACCACCGCCGCCGCCGCCGCCGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000198039.5
3UTR TCA 72 bp GAATCTTGGCACTTCCCAGAAGCACAAGCAAGAGGCTaGCTGGCGCAGGACAAGACAGGACCCTGCAGGTAC +
Preference number: 3 (lower is better)
Translates to: ESWHFPEAQARG*LAQDKTGPCRY
Trigger: GTACCTGCAGGGTCCTGTCTTGTCCTGCGCCAGTCAGCCTCTTGCTTGTGCTTCTGGGAAGTGCCAAGATTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR CCA 72 bp CTTGGCACTTCCCAGAAGCACAAGCAAGAGGCTGACTaGCGCAGGACAAGACAGGACCCTGCAGGTACAATA +
Preference number: 3 (lower is better)
Translates to: LGTSQKHKQEAD*RRTRQDPAGTI
Trigger: TATTGTACCTGCAGGGTCCTGTCTTGTCCTGCGCCAGTCAGCCTCTTGCTTGTGCTTCTGGGAAGTGCCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR TCA 72 bp TGTGTGCCATCCTCTCTCACCACATCACTGTACACCTaGGGAGCACTTTGGTCTACGAGGGGTTGCTCAGTA +
Preference number: 3 (lower is better)
Translates to: CVPSSLTTSLYT*GALWSTRGCSV
Trigger: TACTGAGCAACCCCTCGTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAGAGGATGGCACACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GCATTCCAGGAAGGAAGAAGTGCCACTTGGTTGACTGGTCTTACATGGGCCAGCGCCATTATCTGTGACTaGAGTTGGTGGCTTTCCAGG +
Preference number: 3 (lower is better)
Translates to: AFQEGRSATWLTGLTWASAIICD*SWWLSR
Trigger: CCTGGAAAGCCACCAACTCAAGTCACAGATAATGGC...GCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp CTGCGCAGAAGCACCACATGCTGCATTAACTGGATGCCACATAGCAATACTGGAAACCTGTTCTTGTTGTaGCTGCTGTTGTTGCGGCGG +
Preference number: 3 (lower is better)
Translates to: LRRSTTCCINWMPHSNTGNLFLL*LLLLRR
Trigger: CCGCCGCAACAACAGCAGCAACAACAAGAACAGGTT...TCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp GTATGGCATTCCAGGAAGGAAGAAGTGCCACTTGGTTaGCTGGTCTTACATGGGCCAGCGGAATTGAATGCC +
Preference number: 3 (lower is better)
Translates to: VWHSRKEEVPLG*LVLHGPAELNA
Trigger: GGCATTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGCCATAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp TCTTTCTGTCCCTTGCTTATTGCCTTCTGGTGTACTTaGAGCACTGGAACAGGCGGCAGCCTCTTCAGTTCT +
Preference number: 3 (lower is better)
Translates to: SFCPLLIAFWCT*STGTGGSLFSS
Trigger: AGAACTGAAGAGGCTGCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CCA 72 bp AACCTTTTGTCTTTCTGTCCCTTGCTTATTGCCTTCTaGTGTACTTGCAGCACTGGAACAGGCGGCAGCCTC +
Preference number: 3 (lower is better)
Translates to: NLLSFCPLLIAF*CTCSTGTGGSL
Trigger: GAGGCTGCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTGGCCAGCACTCTCCTaGGGATCTCCCAACCGTTCC +
Preference number: 3 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYWPALS*GSPNRS
Trigger: GGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCCA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CAA 90 bp CATAGCACCATGGATCTGCGCAGAAGCACCACATGCTGCATTAACTGGATGCCATTGGTCTACGAGGGGTaGCTCAGTACAATCTGGATA +
Preference number: 3 (lower is better)
Translates to: HSTMDLRRSTTCCINWMPLVYEG*LSTIWI
Trigger: TATCCAGATTGTACTGAGCAACCCCTCGTAGACCAA...TGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAGATCCATGGTGCTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp GGAACAGGCGGCAGCCTCTTCAGTTCTATCTTCGGTTaGACTCTTCTGATCACTACTGCCTTCTACACTTGC +
Preference number: 3 (lower is better)
Translates to: GTGGSLFSSIFG*TLLITTAFYTC
Trigger: GCAAGTGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGAAGATAGAACTGAAGAGGCTGCCGCCTGTTCC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 72 bp AGACCCATAGGGATCTGTCATTACTGGATAGTAGACTaGTCCATGAGGGAGAGGTACAGCATCAGCAATGGG +
Preference number: 3 (lower is better)
Translates to: RPIGICHYWIVD*SMRERYSISNG
Trigger: CCCATTGCTGATGCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp AGAATGCAGGTAAGAATAGGCAGTGGCCACAAGTACTaGAGCTTGTGTAGGCAGGTATCCGAAGCAGCTCAA +
Preference number: 3 (lower is better)
Translates to: RMQVRIGSGHKY*SLCRQVSEAAQ
Trigger: TTGAGCTGCTTCGGATACCTGCCTACACAAGCTCCAGTACTTGTGGCCACTGCCTATTCTTACCTGCATTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CCA 72 bp GTCATGACCATAATGCATGCTGTGCTGAATCCTGGATaGAACAAGGGGATCTCCCCTGCTATAAGCCATGGT +
Preference number: 3 (lower is better)
Translates to: VMTIMHAVLNPG*NKGISPAISHG
Trigger: ACCATGGCTTATAGCAGGGGAGATCCCCTTGTTCCATCCAGGATTCAGCACAGCATGCATTATGGTCATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp GCTGCAGCTGCTGCTGCACATGTGGCATATAAACCATaGGATGCCAGTAGTTGTGATGATAGCACTGCAATC +
Preference number: 3 (lower is better)
Translates to: AAAAAAHVAYKP*DASSCDDSTAI
Trigger: GATTGCAGTGCTATCATCACAACTACTGGCATCCCATGGTTTATATGCCACATGTGCAGCAGCAGCTGCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp TCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTaGATAGTAGACTGCTCCATGAGGGAGAGGTACAGC +
Preference number: 3 (lower is better)
Translates to: SQQRRPIGICHY*IVDCSMRERYS
Trigger: GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp CTGCCTGAGCCAGAGCAAAACCCAACTTTAGGATTTGGCAAGTTTTGCTTGCTTAGGCAAGAGGCATCCTaGGCAACCACCTTTCGAAAC +
Preference number: 3 (lower is better)
Translates to: LPEPEQNPTLGFGKFCLLRQEAS*ATTFRN
Trigger: GTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCCT...AAGCAAGCAAAACTTGCCAAATCCTAAAGTTGGGTTTTGCTCTGGCTCAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CAA 90 bp AAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGCCATTATCTGTGACTaGAGTTGGTGGCTTTCCAGG +
Preference number: 3 (lower is better)
Translates to: KETHRDLSLLDSRLLHEGAIICD*SWWLSR
Trigger: CCTGGAAAGCCACCAACTCAAGTCACAGATAATGGC...TCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GCATTCCAGGAAGGAAGAAGTGCCACTTGGTTGACTGGTCTTACATGGGCCAGCACTTTCTGGAACCTTTaGTCTTTCTGTCCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: AFQEGRSATWLTGLTWASTFWNL*SFCPLL
Trigger: AAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGT...GCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR TCA 72 bp AAAGACAGAGTTTCTCTGGGTAGAAAAGGATGGCCCTaGACTCAAGATACACCTGCTTCTGGCTCCCAAAGG +
Preference number: 3 (lower is better)
Translates to: KDRVSLGRKGWP*TQDTPASGSQR
Trigger: CCTTTGGGAGCCAGAAGCAGGTGTATCTTGAGTTCAGGGCCATCCTTTTCTACCCAGAGAAACTCTGTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR CCA 72 bp ATTGGTATGGCATTCCAGGAAGGAAGAAGTGCCACTTaGTTGACTGGTCTTACATGGGCCAGCGGAATTGAA +
Preference number: 3 (lower is better)
Translates to: IGMAFQEGRSAT*LTGLTWASGIE
Trigger: TTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGCCATACCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp ATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCGAACTGGAACATGGCTaGCCCAAGAAACTGCAATTG +
Preference number: 3 (lower is better)
Translates to: IGICHYWIVDCSMRERYSELEHG*PKKLQL
Trigger: CAATTGCAGTTTCTTGGGCAAGCCATGTTCCAGTTC...GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp TTTTGTATCTTGGGGCAGATCACTTCCACTCGGATCATAGGAATAAGGCGGCGGGGACTTTCTGGAACCTaGTCTTCAAAGCCATTATCT +
Preference number: 3 (lower is better)
Translates to: FCILGQITSTRIIGIRRRGLSGT*SSKPLS
Trigger: AGATAATGGCTTTGAAGACAAGGTTCCAGAAAGTCC...CCGCCGCCTTATTCCTATGATCCGAGTGGAAGTGATCTGCCCCAAGATACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000198039.5
3UTR GCA 72 bp GACGGACTTTCTGGAACCTTTTGTCTTTCTGTCCCTTaGTTATTGCCTTCTGGTGTACTTGCAGCACTGGAA +
Preference number: 3 (lower is better)
Translates to: DGLSGTFCLSVP*LLPSGVLAALE
Trigger: TTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGTCCGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 72 bp GTGAGTAGTATAGTAGAGGGTCATGACCATAATGCATaGTGTGCTGAATCCTGGATGGAACAAGGGGATCTC +
Preference number: 3 (lower is better)
Translates to: VSSIVEGHDHNA*CAESWMEQGDL
Trigger: GAGATCCCCTTGTTCCATCCAGGATTCAGCACAGCATGCATTATGGTCATGACCCTCTACTATACTACTCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp ATTCATAGCACCATGGATCTGCGCAGAAGCACCACATaGTGCATTAACTGGATGCCACATAGCAATACTGGA +
Preference number: 3 (lower is better)
Translates to: IHSTMDLRRSTT*CINWMPHSNTG
Trigger: TCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAGATCCATGGTGCTATGAAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp GCAAGTTTTGCTTGCTTATTAAGTGAGACGAATCCCTaGGCATCCCATATCCCCGACCTTGTCTTTGAGATG +
Preference number: 3 (lower is better)
Translates to: ASFACLLSETNP*ASHIPDLVFEM
Trigger: CATCTCAAAGACAAGGTCGGGGATATGGGATGCCCAGGGATTCGTCTCACTTAATAAGCAAGCAAAACTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp TCTCCTGCACAGTTCGGTATGACTGGAACTGGAACATaGCTTGCCCAAGAAACTGCAATTGCTGCAGAATTT +
Preference number: 3 (lower is better)
Translates to: SPAQFGMTGTGT*LAQETAIAAEF
Trigger: AAATTCTGCAGCAATTGCAGTTTCTTGGGCAAGCCATGTTCCAGTTCCAGTCATACCGAACTGTGCAGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp TTCATTATCTCCTGCACAGTTCGGTATGACTGGAACTaGAACATGGCTTGCCCAAGAAACTGCAATTGCTGC +
Preference number: 3 (lower is better)
Translates to: FIISCTVRYDWN*NMACPRNCNCC
Trigger: GCAGCAATTGCAGTTTCTTGGGCAAGCCATGTTCCAGTTCCAGTCATACCGAACTGTGCAGGAGATAATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GGGATCTCCCAACCGTTCCAGATATTTCTCAAAAGATCCCTCCACATAAGACTCAAGAGATGGCCTTCTTaGTGCAACTGCTTTGCCAAT +
Preference number: 3 (lower is better)
Translates to: GISQPFQIFLKRSLHIRLKRWPS*CNCFAN
Trigger: ATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTT...GAGTCTTATGTGGAGGGATCTTTTGAGAAATATCTGGAACGGTTGGGAGATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR-3UTR CAA 90 bp TGTGCCATCCTCTCTCACCACATCACTGTACACCTGAGGAGCACTTTGGTCTACGAACATCTTCTTTCGTaGCTTCATGTTCATATCTGT +
Preference number: 3 (lower is better)
Translates to: CAILSHHITVHLRSTLVYEHLLS*LHVHIC
Trigger: ACAGATATGAACATGAAGCAACGAAAGAAGATGTTC...GTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAGAGGATGGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp GCAGCCTCTTCAGTTCTATCTTCGGTTGAACTCTTCTaGTCACTACTGCCTTCTACACTTGCAGTCAAAGCA +
Preference number: 3 (lower is better)
Translates to: AASSVLSSVELF*SLLPSTLAVKA
Trigger: TGCTTTGACTGCAAGTGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGAAGATAGAACTGAAGAGGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR TCA 72 bp AGGTACAGCATCAGCAATGGGAAAAGTATCATTTGTTaGTACATCTGCCTGTGTGCCATCCTCTCTCACCAC +
Preference number: 3 (lower is better)
Translates to: RYSISNGKSIIC*YICLCAILSHH
Trigger: GTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGCTGTACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp AGTGGTCATTACTGTCTCCAGAATTCAAAGGTGGTTTaGATGAGTTATAGCCCTGCCTTGCAACACAGTAGC +
Preference number: 3 (lower is better)
Translates to: SGHYCLQNSKVV*MSYSPALQHSS
Trigger: GCTACTGTGTTGCAAGGCAGGGCTATAACTCATGCAAACCACCTTTGAATTCTGGAGACAGTAATGACCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp AAAAGGATGGCCCTGAACTCAAGATACACCTGCTTCTaGCTCCCAAAGGTTAGAATTAAAGGCATTCACCAC +
Preference number: 3 (lower is better)
Translates to: KRMALNSRYTCF*LPKVRIKGIHH
Trigger: GTGGTGAATGCCTTTAATTCTAACCTTTGGGAGCCAGAAGCAGGTGTATCTTGAGTTCAGGGCCATCCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR CCA 72 bp AGCACTTTGGTCTACGAGGGGTTGCTCAGTACAATCTaGATAACTCTCTCCATGAACCTGTTCTTGTTGTTG +
Preference number: 3 (lower is better)
Translates to: STLVYEGLLSTI*ITLSMNLFLLL
Trigger: CAACAACAAGAACAGGTTCATGGAGAGAGTTATCCAGATTGTACTGAGCAACCCCTCGTAGACCAAAGTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATAGGGAAACAGCATCTTaGACGGACTTTCTGGAACCT +
Preference number: 3 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHRETAS*TDFLEP
Trigger: AGGTTCCAGAAAGTCCGTCAAAGATGCTGTTTCCCT...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GCATCAGCAATGGGAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCCTCTTCCATTACGAATaGGTATGGCATTCCAGGAAG +
Preference number: 3 (lower is better)
Translates to: ASAMGKVSFVDTSACVPSLFHYE*VWHSRK
Trigger: CTTCCTGGAATGCCATACCAATTCGTAATGGAAGAG...GGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp ATAGGGATCTGTCATTACTGGATAGTAGACTGCTCCATGAGGGAGAGGTACAGCTTGAGGGTAAAAATGTaGACTAGACAGAATATGGCC +
Preference number: 3 (lower is better)
Translates to: IGICHYWIVDCSMRERYSLRVKM*TRQNMA
Trigger: GGCCATATTCTGTCTAGTCAACATTTTTACCCTCAA...GCTGTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTAATGACAGATCCCTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp CACTTGGTTGACTGGTCTTACATGGGCCAGCGGAATTaGATGCCTTTCTGCAAATTCCTCAATGAAAACTAC +
Preference number: 3 (lower is better)
Translates to: HLVDWSYMGQRN*MPFCKFLNENY
Trigger: GTAGTTTTCATTGAGGAATTTGCAGAAAGGCATTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp CACAGAAGATGGTCCACTGTCCTGAAGAGACAGGTTTaGTGTAGATACAGTTGTGGTATACACACTAGAAGT +
Preference number: 3 (lower is better)
Translates to: HRRWSTVLKRQV*CRYSCGIHTRS
Trigger: ACTTCTAGTGTGTATACCACAACTGTATCTACAGCAAACCTGTCTCTTCAGGACAGTGGACCATCTTCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp AGAAATATCAGAGGTACGAAGAGCTTCATTATCTCCTaGACAGTTCGGTATGACTGGAACTGGAACATGGCT +
Preference number: 3 (lower is better)
Translates to: RNIRGTKSFIIS*TVRYDWNWNMA
Trigger: AGCCATGTTCCAGTTCCAGTCATACCGAACTGTGCAGGAGATAATGAAGCTCTTCGTACCTCTGATATTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp AATCAAATCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACATGGGCCAGCGGAATaGAATGCCTTTCTGCAAATT +
Preference number: 3 (lower is better)
Translates to: NQIPTKETHRDLSLLDSRHGPAE*NAFLQI
Trigger: AATTTGCAGAAAGGCATTCAATTCCGCTGGCCCATG...TCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGATTTGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp AGGTGGAGGTACAAAGCCAGGTTGTATGGCATTCTGTaGAGAAATATCAGAGGTACGAAGAGCTTCATTATC +
Preference number: 3 (lower is better)
Translates to: RWRYKARLYGIL*RNIRGTKSFII
Trigger: GATAATGAAGCTCTTCGTACCTCTGATATTTCTTCACAGAATGCCATACAACCTGGCTTTGTACCTCCACCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp CATCCTTGGCAACCACCTTTCGAAACAGCCCTAAACTaGCTAAATATTCATCCATTGATGCCTCATTCAAAG +
Preference number: 3 (lower is better)
Translates to: HPWQPPFETALN*LNIHPLMPHSK
Trigger: CTTTGAATGAGGCATCAATGGATGAATATTTAGGCAGTTTAGGGCTGTTTCGAAAGGTGGTTGCCAAGGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 72 bp CAGTTCTATCTTCGGTTGAACTCTTCTGATCACTACTaGCTTCTACACTTGCAGTCAAAGCATGGTGTTTGT +
Preference number: 3 (lower is better)
Translates to: QFYLRLNSSDHY*LLHLQSKHGVC
Trigger: ACAAACACCATGCTTTGACTGCAAGTGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGAAGATAGAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR GCA 72 bp TGGTTGACTGGTCTTACATGGGCCAGCGGAATTGAATaGCTTTCTGCAAATTCCTCAATGAAAACTACTACT +
Preference number: 3 (lower is better)
Translates to: WLTGLTWASGIE*LSANSSMKTTT
Trigger: AGTAGTAGTTTTCATTGAGGAATTTGCAGAAAGGCATTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp TTCCAGATATTTCTCAAAAGATCCCTCCACATAAGACTCAAAAGCTTGTTGGTTAGTTGCTGCAGAATCTaGGCACTTCCCAGAAGCACA +
Preference number: 3 (lower is better)
Translates to: FQIFLKRSLHIRLKSLLVSCCRI*ALPRST
Trigger: TGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAACT...AACCAACAAGCTTTTGAGTCTTATGTGGAGGGATCTTTTGAGAAATATCTGGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR-3UTR CAA 90 bp AATCAAATCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGACTCTTCCATTACGAATaGGTATGGCATTCCAGGAAG +
Preference number: 3 (lower is better)
Translates to: NQIPTKETHRDLSLLDSRLFHYE*VWHSRK
Trigger: CTTCCTGGAATGCCATACCAATTCGTAATGGAAGAG...TCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGATTTGATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR TCA 72 bp TTGCTTGGTAACAGGTATTTTTACCATTCACTGTTGTaGATACTAGGCTGCTTAGTCCAATGTCTTCCAGGG +
Preference number: 3 (lower is better)
Translates to: LLGNRYFYHSLL*ILGCLVQCLPG
Trigger: CCCTGGAAGACATTGGACTAAGCAGCCTAGTATTCACAACAGTGAATGGTAAAAATACCTGTTACCAAGCAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR CCA 72 bp CTACACTTGCAGTCAAAGCATGGTGTTTGTTTCTCCTaGAACCACTTCGAAATAAATCGACTGCAGTTTTCA +
Preference number: 3 (lower is better)
Translates to: LHLQSKHGVCFS*NHFEINRLQFS
Trigger: TGAAAACTGCAGTCGATTTATTTCGAAGTGGTTCCAGGAGAAACAAACACCATGCTTTGACTGCAAGTGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTTGAGGGTAAAAATGTaGACTAGACAGAATATGGCC +
Preference number: 3 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYLRVKM*TRQNMA
Trigger: GGCCATATTCTGTCTAGTCAACATTTTTACCCTCAA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATGAACATCTTCTTTCGTaGCTTCATGTTCATATCTGT +
Preference number: 3 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHEHLLS*LHVHIC
Trigger: ACAGATATGAACATGAAGCAACGAAAGAAGATGTTC...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CCA 72 bp AAATATTCATCCATTGATGCCTCATTCAAAGACTTCTaGCCGCAGTACTTTTTCCATCCTTTTTGCATTGTG +
Preference number: 3 (lower is better)
Translates to: KYSSIDASFKDF*PQYFFHPFCIV
Trigger: CACAATGCAAAAAGGATGGAAAAAGTACTGCGGCCAGAAGTCTTTGAATGAGGCATCAATGGATGAATATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR-3UTR CAA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGACTTTCTGGAACCTTTaGTCTTTCTGTCCCTTGCTT +
Preference number: 3 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLTFWNL*SFCPLL
Trigger: AAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CCA 72 bp CATAACTATTTCAGGGAAATAGCCTCCAGTTATAGTTaGATAACCTCTTCCATTACGAATTGGTATGGCATT +
Preference number: 3 (lower is better)
Translates to: HNYFREIASSYS*ITSSITNWYGI
Trigger: AATGCCATACCAATTCGTAATGGAAGAGGTTATCCAACTATAACTGGAGGCTATTTCCCTGAAATAGTTATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR-3UTR CAA 90 bp AAGATCCCTCCACATAAGACTCAAAAGCTTGTTGGTTTTCCTTCATATATGAGACTTTGTGCAACTGCTTaGCCAATTCAAATTGATGAT +
Preference number: 3 (lower is better)
Translates to: KIPPHKTQKLVGFPSYMRLCATA*PIQIDD
Trigger: ATCATCAATTTGAATTGGCAAAGCAGTTGCACAAAG...TCTCATATATGAAGGAAAACCAACAAGCTTTTGAGTCTTATGTGGAGGGATCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
3UTR-3UTR CAA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACATGGGAAAAGTATCATTaGTTGATACATCTGCCTGTG +
Preference number: 3 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITWEKYH*LIHLPV
Trigger: CACAGGCAGATGTATCAACAAATGATACTTTTCCCA...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR GCA 72 bp TCTTTCCCTCGAAATTTCTTGAACATCTTCTTTCGTTaGTTCATGTTCATATCTGTCATAACTATTTCAGGG +
Preference number: 3 (lower is better)
Translates to: SFPRNFLNIFFR*FMFISVITISG
Trigger: CCCTGAAATAGTTATGACAGATATGAACATGAAGCAACGAAAGAAGATGTTCAAGAAATTTCGAGGGAAAGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR TCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGTGCTGCTCCTGCTGCTaGAGGCTCAAGATAGGCTGG +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGCCSCC*RLKIGW
Trigger: CCAGCCTATCTTGAGCCTTCAGCAGCAGGAGCAGCA...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGGGCCAGCACTCTCCTTaGGATCTCCCAACCGTTCCA +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGGQHSP*DLPTVP
Trigger: TGGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCC...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000198039.5
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGGCAGCACTTTCTGCCTaGGCCAGAGCAAAACCCAAC +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGAALSA*ARAKPN
Trigger: GTTGGGTTTTGCTCTGGCTCAGGCAGAAAGTGCTGC...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TCGGAAATAGCACGAAAGAGGCAAGAGGCATCCTTGGCAACCACCTTTCGAAACGTTTGGGCACCACAGTaGCTCTACCAACTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: SEIARKRQEASLATTFRNVWAPQ*LYQLGG
Trigger: TCCTCCAAGTTGGTAGAGGCACTGTGGTGCCCAAAC...GTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCCTCTTTCGTGCTATTTCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS-3UTR CCA 90 bp CAGCTGTCTGTGAGTAGTATAGTAGAGGGTCATGACCATAATGCATGCTGTGCTGGCCAGCACTCTCCTTaGGATCTCCCAACCGTTCCA +
Preference number: 4 (lower is better)
Translates to: QLSVSSIVEGHDHNACCAGQHSP*DLPTVP
Trigger: TGGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCC...AGCACAGCATGCATTATGGTCATGACCCTCTACTATACTACTCACAGACAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198039.5
3UTR CAA 72 bp TGCTCGGAAATAGCACGAAAGAGGCAAGAGGCATCCTaGGCAACCACCTTTCGAAACAGCCCTAAACTGCCT +
Preference number: 4 (lower is better)
Translates to: CSEIARKRQEAS*ATTFRNSPKLP
Trigger: AGGCAGTTTAGGGCTGTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCCTCTTTCGTGCTATTTCCGAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CAA 72 bp GGTATGGCATTCCAGGAAGGAAGAAGTGCCACTTGGTaGACTGGTCTTACATGGGCCAGCGGAATTGAATGC +
Preference number: 4 (lower is better)
Translates to: GMAFQEGRSATW*TGLTWASGIEC
Trigger: GCATTCAATTCCGCTGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGGAATGCCATACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR TCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGCAAAGGTGGTTTGCATaGGTTATAGCCCTGCCTTGC +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGQRWFA*VIALPC
Trigger: GCAAGGCAGGGCTATAACTCATGCAAACCACCTTTG...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AGCACTCTCCTTGGGATCTCCCAACCGTTCCAGATATTTCTCAAAAGATCCCTCGTTTGGGCACCACAGTaGCTCTACCAACTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: STLLGISQPFQIFLKRSLVWAPQ*LYQLGG
Trigger: TCCTCCAAGTTGGTAGAGGCACTGTGGTGCCCAAAC...GAGGGATCTTTTGAGAAATATCTGGAACGGTTGGGAGATCCCAAGGAGAGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
3UTR CAA 72 bp CTCTCTCACCACATCACTGTACACCTGAGGAGCACTTaGGTCTACGAGGGGTTGCTCAGTACAATCTGGATA +
Preference number: 4 (lower is better)
Translates to: LSHHITVHLRST*VYEGLLSTIWI
Trigger: TATCCAGATTGTACTGAGCAACCCCTCGTAGACCAAAGTGCTCCTCAGGTGTACAGTGATGTGGTGAGAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR TCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGCCATTATCTGTGACTTaGGTTGGTGGCTTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGPLSVT*VGGFPG
Trigger: TCCTGGAAAGCCACCAACTCAAGTCACAGATAATGG...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp GTGAAACAACTGCTCGGAAATAGCACGAAAGAGGCAAGAGGCATCCTTGGCAACCTACCACAAGTGGTTTaGCTTTCTCCAGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: VKQLLGNSTKEARGILGNLPQVV*LSPDSP
Trigger: TGGAGAGTCTGGAGAAAGGCAAACCACTTGTGGTAG...GTTGCCAAGGATGCCTCTTGCCTCTTTCGTGCTATTTCCGAGCAGTTGTTTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS-3UTR GCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTTGTGGCCACTGGTGCTaGTGCTGCTGCTGCTGCTGC +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFCGHWC*CCCCCC
Trigger: GCAGCAGCAGCAGCAGCAGCAGCACCAGTGGCCACA...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp GGCAGTTGCTGCAGAATCTTGGCACTTCCCAGAAGCACAAGCAAGAGGCTGACTTACAACTACCACAAGTaGTTTGCCTTTCTCCAGACT +
Preference number: 4 (lower is better)
Translates to: GSCCRILALPRSTSKRLTYNYHK*FAFLQT
Trigger: AGTCTGGAGAAAGGCAAACCACTTGTGGTAGTTGTA...AGTCAGCCTCTTGCTTGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAACTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
CDS-3UTR CCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGAAGCATATAGCCAATTaGCCCGGGATTCATAGCACC +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGKHIAN*PGIHST
Trigger: GGTGCTATGAATCCCGGGCCAATTGGCTATATGCTT...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
3UTR CAA 72 bp CTTTCTGGAACCTTTTGTCTTTCTGTCCCTTGCTTATaGCCTTCTGGTGTACTTGCAGCACTGGAACAGGCG +
Preference number: 4 (lower is better)
Translates to: LSGTFCLSVPCL*PSGVLAALEQA
Trigger: CGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CAA 72 bp AACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTaGCCCATTAGAGGGACGAGTTGTACATTCATTGCA +
Preference number: 4 (lower is better)
Translates to: NMLATRKLAPMN*PIRGTSCTFIA
Trigger: TGCAATGAATGTACAACTCGTCCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp ATGGCCCTGAACTCAAGATACACCTGCTTCTGGCTCCCAAAGGTTAGAATTAAAGTTTGGGCACCACAGTaGCTCTACCAACTTGGAGGA +
Preference number: 4 (lower is better)
Translates to: MALNSRYTCFWLPKVRIKVWAPQ*LYQLGG
Trigger: TCCTCCAAGTTGGTAGAGGCACTGTGGTGCCCAAAC...TTTAATTCTAACCTTTGGGAGCCAGAAGCAGGTGTATCTTGAGTTCAGGGCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR GCA 90 bp ATAGCACGAAAGAGGCAAGAGGCATCCTTGGCAACCACCTTTCGAAACAGCCCTGACAAGACAGGACCCTaGAGGTACAATAAAAGAGAT +
Preference number: 4 (lower is better)
Translates to: IARKRQEASLATTFRNSPDKTGP*RYNKRD
Trigger: ATCTCTTTTATTGTACCTGCAGGGTCCTGTCTTGTC...AGGGCTGTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCCTCTTTCGTGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
CDS-3UTR GCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGTGTTGCGGCGGCGGCTaGTGCTGTTGCGGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMCCGGG*CCCGCC
Trigger: ACAGCAGCCGCAACAGCAGCAGCCGCCGCCGCAACA...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTTGTTGCTGCTGTTGTTaGGGCGGCGGCTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFCCCCC*GGGCCC
Trigger: ACAGCAGCAGCCGCCGCCGCAACAACAGCAGCAACA...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTGTTCTTGTTGTTGCTaGTGTTGTTGCGGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYCSCCC*CCCGGG
Trigger: GCCGCCGCCGCAACAACAGCAGCAACAACAAGAACA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp AACTGCTCGGAAATAGCACGAAAGAGGCAAGAGGCATCCTTGGCAACCACCTTTAACATCCAGAGTGAATaGCTCAGTACGGAATGGTTT +
Preference number: 4 (lower is better)
Translates to: NCSEIARKRQEASLATTFNIQSE*LSTEWF
Trigger: AAACCATTCCGTACTGAGTCATTCACTCTGGATGTT...AAAGGTGGTTGCCAAGGATGCCTCTTGCCTCTTTCGTGCTATTTCCGAGCAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS-3UTR TCA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGAGACACAAGCTCTCCTaGTCTGTAAATGATGGATCT +
Preference number: 4 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGRHKLS*SVNDGS
Trigger: AGATCCATCATTTACAGATCAGGAGAGCTTGTGTCT...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTCTGGCAGCACTTTCTaGCTGAGCCAGAGCAAAACC +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYSGSTF*LSQSKT
Trigger: GGTTTTGCTCTGGCTCAGGCAGAAAGTGCTGCCAGA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp ACACCTGCTTCTGGCTCCCAAAGGTTAGAATTAAAGGCATTCACCACCACTGCCTACAACTACCACAAGTaGTTTGCCTTTCTCCAGACT +
Preference number: 4 (lower is better)
Translates to: TPASGSQRLELKAFTTTAYNYHK*FAFLQT
Trigger: AGTCTGGAGAAAGGCAAACCACTTGTGGTAGTTGTA...GGCAGTGGTGGTGAATGCCTTTAATTCTAACCTTTGGGAGCCAGAAGCAGGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CCA 90 bp GTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATCACTGGTTGCTGCAGAATCTTaGCACTTCCCAGAAGCACAA +
Preference number: 4 (lower is better)
Translates to: VSFVDTSACVPSSLTTSLVAAES*HFPEAQ
Trigger: TTGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAAC...CAGTGATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
CDS-3UTR CCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACGCTTTTAGTTCCAGCTaGCCAGCACTCTCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYAFSSS*PALSLG
Trigger: TCCCAAGGAGAGTGCTGGCCAGCTGGAACTAAAAGC...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGTGCTGCCACTGGTGTaGCCACTGGTGCTGCTGCTG +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMVLPLV*PLVLLL
Trigger: CAGCAGCAGCACCAGTGGCCACACCAGTGGCAGCAC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGGGCTGCGGCTGCAGCTaGTGCTGCACATGTGGCATA +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLGCGCS*CCTCGI
Trigger: TATGCCACATGTGCAGCAGCAGCTGCAGCCGCAGCC...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACGGCAAGAGGCATCCTTaGCAACCACCTTTCGAAACA +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYGKRHP*QPPFET
Trigger: TGTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCC...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
3UTR CAA 72 bp CGGTTGAACTCTTCTGATCACTACTGCCTTCTACACTaGCAGTCAAAGCATGGTGTTTGTTTCTCCTGGAAC +
Preference number: 4 (lower is better)
Translates to: RLNSSDHYCLLH*QSKHGVCFSWN
Trigger: GTTCCAGGAGAAACAAACACCATGCTTTGACTGCAAGTGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CAA 72 bp GAGGTACAGCATCAGCAATGGGAAAAGTATCATTTGTaGATACATCTGCCTGTGTGCCATCCTCTCTCACCA +
Preference number: 4 (lower is better)
Translates to: EVQHQQWEKYHL*IHLPVCHPLSP
Trigger: TGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGCTGTACCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
3UTR CAA 72 bp GGAGAGGTACAGCATCAGCAATGGGAAAAGTATCATTaGTTGATACATCTGCCTGTGTGCCATCCTCTCTCA +
Preference number: 4 (lower is better)
Translates to: GEVQHQQWEKYH*LIHLPVCHPLS
Trigger: TGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGCTGTACCTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR TCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTGAAGTGCCACTTGGTTaGCTGGTCTTACATGGGCCA +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFEVPLG*LVLHGP
Trigger: TGGCCCATGTAAGACCAGTCAACCAAGTGGCACTTC...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTGCAACACAGTAGCCTaGAGTAGCAGGAACCATTGT +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYCNTVA*SSRNHC
Trigger: ACAATGGTTCCTGCTACTTCAGGCTACTGTGTTGCA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAGCCTTCTGGTGTACTTaGAGCACTGGAACAGGCGGC +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITAFWCT*STGTGG
Trigger: GCCGCCTGTTCCAGTGCTGCAAGTACACCAGAAGGC...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp ATGGCCCTGAACTCAAGATACACCTGCTTCTGGCTCCCAAAGGTTAGAATTAAAAACATCCAGAGTGAATaGCTCAGTACGGAATGGTTT +
Preference number: 4 (lower is better)
Translates to: MALNSRYTCFWLPKVRIKNIQSE*LSTEWF
Trigger: AAACCATTCCGTACTGAGTCATTCACTCTGGATGTT...TTTAATTCTAACCTTTGGGAGCCAGAAGCAGGTGTATCTTGAGTTCAGGGCCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCCCCGAAGCATCTCCTaGTTCAAGAGTAGCAGGAGG +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLPRSIS*FKSSRR
Trigger: CCTCCTGCTACTCTTGAAGCAGGAGATGCTTCGGGG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGAGTGAGACGAATCCCTaGGCATCCCATATCCCCGAC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLSETNP*ASHIPD
Trigger: GTCGGGGATATGGGATGCCCAGGGATTCGTCTCACT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp GAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCTCTCTCACCACATAACATCCAGAGTGAATaGCTCAGTACGGAATGGTTT +
Preference number: 4 (lower is better)
Translates to: EKYHLLIHLPVCHPLSPHNIQSE*LSTEWF
Trigger: AAACCATTCCGTACTGAGTCATTCACTCTGGATGTT...ATGTGGTGAGAGAGGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154827.8
CDS-3UTR TCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTGGGAAACAGCATCTTTaGCGGACTTTCTGGAACCTT +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFGKQHL*RTFWNL
Trigger: AAGGTTCCAGAAAGTCCGTCAAAGATGCTGTTTCCC...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTATGGGCCAGCGGAATTaGATGCCTTTCTGCAAATTC +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFMGQRN*MPFCKF
Trigger: GAATTTGCAGAAAGGCATTCAATTCCGCTGGCCCAT...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGCTGCACAGTTCGGTATaGCTGGAACTGGAACATGGC +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMLHSSV*LELEHG
Trigger: GCCATGTTCCAGTTCCAGTCATACCGAACTGTGCAG...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp CAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTTGTCTATTTTACAGGAACCTACCACAAGTGGTTTaGCTTTCTCCAGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: QVLYSLNNFPSPCLFYRNLPQVV*LSPDSP
Trigger: TGGAGAGTCTGGAGAAAGGCAAACCACTTGTGGTAG...GTTCCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR GCA 90 bp ATTCTCTGGAGCAAAACCATATTGGCATCCCTTATTCATGCAATGCATCTGACGGACAAGACAGGACCCTaGAGGTACAATAAAAGAGAT +
Preference number: 4 (lower is better)
Translates to: ILWSKTILASLIHAMHLTDKTGP*RYNKRD
Trigger: ATCTCTTTTATTGTACCTGCAGGGTCCTGTCTTGTC...CGTCAGATGCATTGCATGAATAAGGGATGCCAATATGGTTTTGCTCCAGAGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
CDS-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACACTGCCTTCTACACTTaGAGTCAAAGCATGGTGTTT +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYTAFYT*SQSMVF
Trigger: AAACACCATGCTTTGACTGCAAGTGTAGAAGGCAGT...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACCTGAAGAGACAGGTTTaGTGTAGATACAGTTGTGGT +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYLKRQV*CRYSCG
Trigger: ACCACAACTGTATCTACAGCAAACCTGTCTCTTCAG...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGACCTGTTCTTGTTGTTaGTGCTGTTGTTGCGGCGGC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLTCSCC*CCCCGG
Trigger: GCCGCCGCAACAACAGCAGCAACAACAAGAACAGGT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTGGAAGAAGTGCCACTTaGTTGACTGGTCTTACATGG +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFGRSAT*LTGLTW
Trigger: CCATGTAAGACCAGTCAACCAAGTGGCACTTCTTCC...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTCTTCCATTACGAATTaGTATGGCATTCCAGGAAGG +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYSSITN*YGIPGR
Trigger: CCTTCCTGGAATGCCATACCAATTCGTAATGGAAGA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTTTGAGGCACAGAAGATaGTCCACTGTCCTGAAGAGA +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFLRHRR*STVLKR
Trigger: TCTCTTCAGGACAGTGGACCATCTTCTGTGCCTCAA...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
42% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTACTGGAACTGGAACATaGCTTGCCCAAGAAACTGCA +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFTGTGT*LAQETA
Trigger: TGCAGTTTCTTGGGCAAGCCATGTTCCAGTTCCAGT...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGATGGTCCACTGTCCTaGAGAGACAGGTTTGCTGTA +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMDGPLS*RDRFAV
Trigger: TACAGCAAACCTGTCTCTTCAGGACAGTGGACCATC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACACCAGGAAGGAAGAAGTaGCACTTGGTTGACTGGTCT +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITPGRKK*HLVDWS
Trigger: AGACCAGTCAACCAAGTGGCACTTCTTCCTTCCTGG...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACACGCAGAAGCACCACATaGTGCATTAACTGGATGCCA +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITRRSTT*CINWMP
Trigger: TGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCG...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CCAACCGTTCCAGATATTTCTCAAAAGATCCCTCCACATAAGACTCAAAAGCTTTACAACTACCACAAGTaGTTTGCCTTTCTCCAGACT +
Preference number: 4 (lower is better)
Translates to: PTVPDISQKIPPHKTQKLYNYHK*FAFLQT
Trigger: AGTCTGGAGAAAGGCAAACCACTTGTGGTAGTTGTA...AAGCTTTTGAGTCTTATGTGGAGGGATCTTTTGAGAAATATCTGGAACGGTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS-3UTR CCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGACTACCTTGTGCAGGTaGAGGTACAAAGCCAGGTTG +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMTTLCR*RYKARL
Trigger: CAACCTGGCTTTGTACCTCCACCTGCACAAGGTAGT...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGCTGTCCCTTGCTTATTaGCTTCTGGTGTACTTGCAG +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMLSLAY*LLVYLQ
Trigger: CTGCAAGTACACCAGAAGGCAATAAGCAAGGGACAG...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGTACTGGATAGTAGACTaGTCCATGAGGGAGAGGTAC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLYWIVD*SMRERY
Trigger: GTACCTCTCCCTCATGGAGCAGTCTACTATCCAGTA...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTGCCTCCAGTTATAGTTaGATAACCTCTTCCATTACG +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFASSYS*ITSSIT
Trigger: CGTAATGGAAGAGGTTATCCAACTATAACTGGAGGC...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTCCTCCATTATCACAGTaGTCATTACTGTCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFPPLSQ*SLLSPE
Trigger: TTCTGGAGACAGTAATGACCACTGTGATAATGGAGG...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGACAGTTCGGTATGACTaGAACTGGAACATGGCTTGC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLTVRYD*NWNMAC
Trigger: GCAAGCCATGTTCCAGTTCCAGTCATACCGAACTGT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp ATACAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTTGTCTATTTTACAGGTGTAAACATCCAGAGTaGATGACTCAGTACGGAATG +
Preference number: 4 (lower is better)
Translates to: IQVLYSLNNFPSPCLFYRCKHPE*MTQYGM
Trigger: CATTCCGTACTGAGTCATTCACTCTGGATGTTTACA...CCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR TCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCAAAGCCATTATCTGTaGCTTGAGTTGGTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLQSHYL*LELVAF
Trigger: GAAAGCCACCAACTCAAGTCACAGATAATGGCTTTG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACATCGGTTGAACTCTTCTaGTCACTACTGCCTTCTACA +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITSVELF*SLLPST
Trigger: TGTAGAAGGCAGTAGTGATCAGAAGAGTTCAACCGA...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACACATGACCATAATGCATaGTGTGCTGAATCCTGGATG +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITHDHNA*CAESWM
Trigger: CATCCAGGATTCAGCACAGCATGCATTATGGTCATG...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAAACTGGAACATGGCTTaGCCAAGAAACTGCAATTGC +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITNWNMA*PRNCNC
Trigger: GCAATTGCAGTTTCTTGGGCAAGCCATGTTCCAGTT...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp ATACAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTTGTCTATTTTACAGGTGCAGAAAATTTTTCTaGCTGGCCAGGAGGATAACA +
Preference number: 4 (lower is better)
Translates to: IQVLYSLNNFPSPCLFYRCRKFF*LARRIT
Trigger: TGTTATCCTCCTGGCCAGCCAGAAAAATTTTCTGCA...CCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTGTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CCA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACGACTCAAAAGCTTGTTaGTTTTCCTTCATATATGAG +
Preference number: 4 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYDSKAC*FSFIYE
Trigger: CTCATATATGAAGGAAAACCAACAAGCTTTTGAGTC...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGGGATCTGTCATTACTaGATAGTAGACTGCTCCATG +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMGICHY*IVDCSM
Trigger: CATGGAGCAGTCTACTATCCAGTAATGACAGATCCC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp ATAAAAGAGATGGCCTTCTTTGTGCAACTGCTTTGCCAATTCAAATTGATGATTTGTAAACATCCAGAGTaGATGACTCAGTACGGAATG +
Preference number: 4 (lower is better)
Translates to: IKEMAFFVQLLCQFKLMICKHPE*MTQYGM
Trigger: CATTCCGTACTGAGTCATTCACTCTGGATGTTTACA...AATCATCAATTTGAATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTTTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
CDS-3UTR GCA 90 bp CTCTCATGTAATATAAACAAATACCCAGGAGCACAGGCTCCTGTTTGGATTTTTGAAACAGCCCTAAACTaGCTAAATATTCATCCATTG +
Preference number: 4 (lower is better)
Translates to: LSCNINKYPGAQAPVWIFETALN*LNIHPL
Trigger: CAATGGATGAATATTTAGGCAGTTTAGGGCTGTTTC...AAAAATCCAAACAGGAGCCTGTGCTCCTGGGTATTTGTTTATATTACATGAGAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGAATTCAAAGGTGGTTTaGATGAGTTATAGCCCTGCC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLNSKVV*MSYSPA
Trigger: GGCAGGGCTATAACTCATGCAAACCACCTTTGAATT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGGCTTGCCCAAGAAACTaGAATTGCTGCAGAATTTTC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLACPRN*NCCRIF
Trigger: GAAAATTCTGCAGCAATTGCAGTTTCTTGGGCAAGC...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR GCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAGCTGCATTAACTGGATaGCACATAGCAATACTGGAA +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITAALTG*HIAILE
Trigger: TTCCAGTATTGCTATGTGGCATCCAGTTAATGCAGC...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGTTCCACTCCATTCTCTaGAGCAAAACCATATTGGCA +
Preference number: 4 (lower is better)
Translates to: FTANCAKDTIILCGRTVMFHSIL*SKTILA
Trigger: TGCCAATATGGTTTTGCTCCAGAGAATGGAGTGGAA...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGTTGTATGGCATTCTGTaGAGAAATATCAGAGGTACG +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLLYGIL*RNIRGT
Trigger: CGTACCTCTGATATTTCTTCACAGAATGCCATACAA...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGAAAAGTATCATTTGTTaGTACATCTGCCTGTGTGCC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLKSIIC*YICLCA
Trigger: GGCACACAGGCAGATGTATCAACAAATGATACTTTT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGATTTCGATAGATTTCTaGATCCAGAGCTTTCAGCAC +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLISIDF*IQSFQH
Trigger: GTGCTGAAAGCTCTGGATCCAGAAATCTATCGAAAT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCATTACGAATTGGTATaGCATTCCAGGAAGGAAGAA +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLHYELV*HSRKEE
Trigger: TTCTTCCTTCCTGGAATGCCATACCAATTCGTAATG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAAAAACTTTTGTATCTTaGGGCAGATCACTTCCACTC +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITKTFVS*GRSLPL
Trigger: GAGTGGAAGTGATCTGCCCCAAGATACAAAAGTTTT...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAATAATATTTTCCACCTaGTTCCATGCAAACCTGACA +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITIIFST*FHANLT
Trigger: TGTCAGGTTTGCATGGAATCAGGTGGAAAATATTAT...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR TCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGACCTTGTCTTTGAGATaGATGTTGAGGGTAAAAATG +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLTLSLR*MLRVKM
Trigger: CATTTTTACCCTCAACATTCATCTCAAAGACAAGGT...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCCCAACTTTAGGATTTaGCAAGTTTTGCTTGCTTAT +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLPNFRI*QVLLAY
Trigger: ATAAGCAAGCAAAACTTGCCAAATCCTAAAGTTGGG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGCAAAGCCAGGTTGTATaGCATTCTGTGAAGAAATAT +
Preference number: 4 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLQSQVV*HSVKKY
Trigger: ATATTTCTTCACAGAATGCCATACAACCTGGCTTTG...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CCA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACAGTACAGCATCAGCAATaGGAAAAGTATCATTTGTTG +
Preference number: 4 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITVQHQQ*EKYHLL
Trigger: CAACAAATGATACTTTTCCCATTGCTGATGCTGTAC...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
3UTR CAA 72 bp ACAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTaGTCTATTTTACAGGAACAAATATTACCAGGAATG +
Preference number: 4 (lower is better)
Translates to: TSTLLTKQFPQP*SILQEQILPGM
Trigger: CATTCCTGGTAATATTTGTTCCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
3UTR CAA 72 bp GAGAATAATCTTGTCTTCAAAGCCATTATCTGTGACTaGAGTTGGTGGCTTTCCAGGATAACGATAAATAAT +
Preference number: 4 (lower is better)
Translates to: ENNLVFKAIICD*SWWLSRITINN
Trigger: ATTATTTATCGTTATCCTGGAAAGCCACCAACTCAAGTCACAGATAATGGCTTTGAAGACAAGATTATTCTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
3UTR CAA 72 bp TCCTATAGTGAGCTATATCCTTACTTTTTACCTTGCTaGGTAACAGGTATTTTTACCATTCACTGTTGTGAA +
Preference number: 4 (lower is better)
Translates to: SYSELYPYFLPC*VTGIFTIHCCE
Trigger: TTCACAACAGTGAATGGTAAAAATACCTGTTACCAAGCAAGGTAAAAAGTAAGGATATAGCTCACTATAGGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS GCA 90 bp ACCCAGACTCTCGAGGATCTGAACGCAGTCGTTAGCGACCACCCGTaGGACGAGCTCGTCGAAACTGGTGGTCCCGACAGTCACAAACGC +
Preference number: 5 (lower is better)
Translates to: TQTLEDLNAVVSDHP*DELVETGGPDSHKR
Trigger: GCGTTTGTGACTGTCGGGACCACCAGTTTCGACGAGCTCGTCGCACGGGTGGTCGCTAACGACTGCGTTCAGATCCTCGAGAGTCTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS-3UTR CAA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGTGGCCAGCACTCTCCTaGGGATCTCCCAACCGTTCC +
Preference number: 5 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGWPALS*GSPNRS
Trigger: GGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCCA...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000198039.5
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGAGGCAAGAGGCATCCTaGGCAACCACCTTTCGAAAC +
Preference number: 5 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGRQEAS*ATTFRN
Trigger: GTTTCGAAAGGTGGTTGCCAAGGATGCCTCTTGCCT...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS GCA 90 bp TACCACAAGTGGTTTGCCTTTCTCCAGACTCTCCAAACAGCTTCCTaGACCTGCGTGGCTAATGACAAGATCAGCTTGCTGAAGGTCTTC +
Preference number: 5 (lower is better)
Translates to: YHKWFAFLQTLQTAS*TCVANDKISLLKVF
Trigger: GAAGACCTTCAGCAAGCTGATCTTGTCATTAGCCACGCAGGTGCAGGAAGCTGTTTGGAGAGTCTGGAGAAAGGCAAACCACTTGTGGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070801.11
ENSMUST00000154827.8
CDS-3UTR CAA 90 bp AATCAAATCCCAACAAAGGAGACCCATAGGGATCTGTCATTACTGGATAGTAGATGGCCAGCACTCTCCTaGGGATCTCCCAACCGTTCC +
Preference number: 5 (lower is better)
Translates to: NQIPTKETHRDLSLLDSRWPALS*GSPNRS
Trigger: GGAACGGTTGGGAGATCCCAAGGAGAGTGCTGGCCA...TCTACTATCCAGTAATGACAGATCCCTATGGGTCTCCTTTGTTGGGATTTGATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGTTGGTCTACGAGGGGTaGCTCAGTACAATCTGGATA +
Preference number: 5 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGLVYEG*LSTIWI
Trigger: TATCCAGATTGTACTGAGCAACCCCTCGTAGACCAA...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp CTGCGCAGAAGCACCACATGCTGCATTAACTGGATGCCACATAGCAATACTGGAAAGAGATGGCCTTCTTaGTGCAACTGCTTTGCCAAT +
Preference number: 5 (lower is better)
Translates to: LRRSTTCCINWMPHSNTGKRWPS*CNCFAN
Trigger: ATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTT...TCCAGTATTGCTATGTGGCATCCAGTTAATGCAGCATGTGGTGCTTCTGCGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp GCATCCTTGGCAACCACCTTTCGAAACAGCCCTAAACTGCCTAAATATTCATCCAGTTGCTGCAGAATCTaGGCACTTCCCAGAAGCACA +
Preference number: 5 (lower is better)
Translates to: ASLATTFRNSPKLPKYSSSCCRI*ALPRST
Trigger: TGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAACT...GGATGAATATTTAGGCAGTTTAGGGCTGTTTCGAAAGGTGGTTGCCAAGGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
CDS-3UTR CAA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGACTTTCTGGAACCTTTaGTCTTTCTGTCCCTTGCTT +
Preference number: 5 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGTFWNL*SFCPLL
Trigger: AAGCAAGGGACAGAAAGACAAAAGGTTCCAGAAAGT...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTTAACATGCTGGCTACCAGGAAGCTGGCTCCAATGAACTTGCCCATTAGAGGGTGGAGCAAAACCATATaGGCATCCCTTATTCATGCA +
Preference number: 5 (lower is better)
Translates to: FNMLATRKLAPMNLPIRGWSKTI*ASLIHA
Trigger: TGCATGAATAAGGGATGCCAATATGGTTTTGCTCCA...CCCTCTAATGGGCAAGTTCATTGGAGCCAGCTTCCTGGTAGCCAGCATGTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS TCA 90 bp GTCTTCTTTCAAAGAATCCTTATACCTGTAAACATCCAGAGTGAATaGCTCAGTACGGAATGGTTTGGGCACCACAGTGCCTCTACCAAC +
Preference number: 5 (lower is better)
Translates to: VFFQRILIPVNIQSE*LSTEWFGHHSASTN
Trigger: GTTGGTAGAGGCACTGTGGTGCCCAAACCATTCCGTACTGAGTCATTCACTCTGGATGTTTACAGGTATAAGGATTCTTTGAAAGAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000070801.11
ENSMUST00000154827.8
CDS GCA 90 bp GATGATTGTTCATTAACTTTTCATTTACAACTACCACAAGTGGTTTaGCTTTCTCCAGACTCTCCAAACAGCTTCCTGCACCTGCGTGGC +
Preference number: 5 (lower is better)
Translates to: DDCSLTFHLQLPQVV*LSPDSPNSFLHLRG
Trigger: GCCACGCAGGTGCAGGAAGCTGTTTGGAGAGTCTGGAGAAAGGCAAACCACTTGTGGTAGTTGTAAATGAAAAGTTAATGAACAATCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070801.11
ENSMUST00000154827.8
CDS GCA 90 bp TCAGTGTTGATAAATCCATTGACTGTAACAGCCCAGGAAGCGTGCTaGAGGTACAATAAAAGAGATGGCCTTCTTTGTGCAACTGCTTTG +
Preference number: 5 (lower is better)
Translates to: SVLINPLTVTAQEAC*RYNKRDGLLCATAL
Trigger: CAAAGCAGTTGCACAAAGAAGGCCATCTCTTTTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGATTTATCAACACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000123710.8
ENSMUST00000149330.8
CDS-3UTR CAA 90 bp AGTATAGTAGAGGGTCATGACCATAATGCATGCTGTGCTGAATCCTGGATGGAAAAGAGATGGCCTTCTTaGTGCAACTGCTTTGCCAAT +
Preference number: 5 (lower is better)
Translates to: SIVEGHDHNACCAESWMEKRWPS*CNCFAN
Trigger: ATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTT...TTCCATCCAGGATTCAGCACAGCATGCATTATGGTCATGACCCTCTACTATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp AATAATCTTGTCTTCAAAGCCATTATCTGTGACTTGAGTTGGTGGCTTTCCAGGAGTTGCTGCAGAATCTaGGCACTTCCCAGAAGCACA +
Preference number: 5 (lower is better)
Translates to: NNLVFKAIICDLSWWLSRSCCRI*ALPRST
Trigger: TGTGCTTCTGGGAAGTGCCAAGATTCTGCAGCAACT...CCTGGAAAGCCACCAACTCAAGTCACAGATAATGGCTTTGAAGACAAGATTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
CDS-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACCATGGGCCAGCGGAATaGAATGCCTTTCTGCAAATT +
Preference number: 5 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYHGPAE*NAFLQI
Trigger: AATTTGCAGAAAGGCATTCAATTCCGCTGGCCCATG...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS GCA 90 bp TCTCCCAACCGTTCCAGATATTTCTCAAAAGATCCCTCCACATACTaGAGGTACAATAAAAGAGATGGCCTTCTTTGTGCAACTGCTTTG +
Preference number: 5 (lower is better)
Translates to: SPNRSRYFSKDPSTY*RYNKRDGLLCATAL
Trigger: CAAAGCAGTTGCACAAAGAAGGCCATCTCTTTTATTGTACCTGCAGTATGTGGAGGGATCTTTTGAGAAATATCTGGAACGGTTGGGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp CTACCTTGTGCAGGTGGAGGTACAAAGCCAGGTTGTATGGCATTCTGTGAAGAACTTTGTGCAACTGCTTaGCCAATTCAAATTGATGAT +
Preference number: 5 (lower is better)
Translates to: LPCAGGGTKPGCMAFCEELCATA*PIQIDD
Trigger: ATCATCAATTTGAATTGGCAAAGCAGTTGCACAAAG...TTCTTCACAGAATGCCATACAACCTGGCTTTGTACCTCCACCTGCACAAGGTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACTACTGCCTTCTACACTaGCAGTCAAAGCATGGTGTT +
Preference number: 5 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYYCLLH*QSKHGV
Trigger: AACACCATGCTTTGACTGCAAGTGTAGAAGGCAGTA...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACCTCTTCCATTACGAATaGGTATGGCATTCCAGGAAG +
Preference number: 5 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYLFHYE*VWHSRK
Trigger: CTTCCTGGAATGCCATACCAATTCGTAATGGAAGAG...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp GCATCAGCAATGGGAAAAGTATCATTTGTTGATACATCTGCCTGTGTGCCATCCAATGACAAGATCAGCTaGCTGAAGGTCTTCTTTCAA +
Preference number: 5 (lower is better)
Translates to: ASAMGKVSFVDTSACVPSNDKIS*LKVFFQ
Trigger: TTGAAAGAAGACCTTCAGCAAGCTGATCTTGTCATT...GGATGGCACACAGGCAGATGTATCAACAAATGATACTTTTCCCATTGCTGATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154827.8
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGAACCTGTTCTTGTTGTaGCTGCTGTTGTTGCGGCGG +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMNLFLL*LLLLRR
Trigger: CCGCCGCAACAACAGCAGCAACAACAAGAACAGGTT...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp AGTATAGTAGAGGGTCATGACCATAATGCATGCTGTGCTGAATCCTGGATGGAACTTTGTGCAACTGCTTaGCCAATTCAAATTGATGAT +
Preference number: 5 (lower is better)
Translates to: SIVEGHDHNACCAESWMELCATA*PIQIDD
Trigger: ATCATCAATTTGAATTGGCAAAGCAGTTGCACAAAG...TTCCATCCAGGATTCAGCACAGCATGCATTATGGTCATGACCCTCTACTATACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp AACTGGTTAATATCAGGCTACAATTCAGTTCTGACGACTCTTAAAAGAAATCTGGCCATTATCTGTGACTaGAGTTGGTGGCTTTCCAGG +
Preference number: 5 (lower is better)
Translates to: NWLISGYNSVLTTLKRNLAIICD*SWWLSR
Trigger: CCTGGAAAGCCACCAACTCAAGTCACAGATAATGGC...CAGATTTCTTTTAAGAGTCGTCAGAACTGAATTGTAGCCTGATATTAACCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp CTTCCAGGGAATTCTATCTACATCTTCCAATATCATCATAGGCACAAGGATTTAAAGAGATGGCCTTCTTaGTGCAACTGCTTTGCCAAT +
Preference number: 5 (lower is better)
Translates to: LPGNSIYIFQYHHRHKDLKRWPS*CNCFAN
Trigger: ATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTT...TAAATCCTTGTGCCTATGATGATATTGGAAGATGTAGATAGAATTCCCTGGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CAA 90 bp ATCTGTCATAACTATTTCAGGGAAATAGCCTCCAGTTATAGTTGGATAACCTCTAAGAGATGGCCTTCTTaGTGCAACTGCTTTGCCAAT +
Preference number: 5 (lower is better)
Translates to: ICHNYFREIASSYSWITSKRWPS*CNCFAN
Trigger: ATTGGCAAAGCAGTTGCACAAAGAAGGCCATCTCTT...AGAGGTTATCCAACTATAACTGGAGGCTATTTCCCTGAAATAGTTATGACAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000154827.8
ENSMUST00000197316.5
ENSMUST00000198039.5
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGAGGGAAACAGCATCTTaGACGGACTTTCTGGAACCT +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMRETAS*TDFLEP
Trigger: AGGTTCCAGAAAGTCCGTCAAAGATGCTGTTTCCCT...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp GCAAATGCAAAGCAGAACACCATGTGCCTTCAAAACTGGTTAATATCAGGCTACCCCAAGAAACTGCAATaGCTGCAGAATTTTCTAATA +
Preference number: 5 (lower is better)
Translates to: ANAKQNTMCLQNWLISGYPKKLQ*LQNFLI
Trigger: TATTAGAAAATTCTGCAGCAATTGCAGTTTCTTGGG...GTAGCCTGATATTAACCAGTTTTGAAGGCACATGGTGTTCTGCTTTGCATTTGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGAACTGGAACATGGCTaGCCCAAGAAACTGCAATTG +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMELEHG*PKKLQL
Trigger: CAATTGCAGTTTCTTGGGCAAGCCATGTTCCAGTTC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp CAAGTACTTTACTCACTAAACAATTTCCCCAGCCCTTGTCTATTTTACAGGAACAATGACAAGATCAGCTaGCTGAAGGTCTTCTTTCAA +
Preference number: 5 (lower is better)
Translates to: QVLYSLNNFPSPCLFYRNNDKIS*LKVFFQ
Trigger: TTGAAAGAAGACCTTCAGCAAGCTGATCTTGTCATT...GTTCCTGTAAAATAGACAAGGGCTGGGGAAATTGTTTAGTGAGTAAAGTACTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CAA 90 bp TCACATTCTACCTATATATCTCCATGTACTCATGTGAATATAGCCATGGATCCTGTGTTGATAAATCCATaGACTGTAACAGCCCAGGAA +
Preference number: 5 (lower is better)
Translates to: SHSTYISPCTHVNIAMDPVLINP*TVTAQE
Trigger: TTCCTGGGCTGTTACAGTCAATGGATTTATCAACAC...AGGATCCATGGCTATATTCACATGAGTACATGGAGATATATAGGTAGAATGTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGTCCATGAACCTGTTCTaGTTGTTGCTGCTGTTGTTG +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMSMNLF*LLLLLL
Trigger: CAACAACAGCAGCAACAACAAGAACAGGTTCATGGA...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTGCCCATTAGAGGGACGAGTTGTACATTCATTGCAATTTTCTTATTCATAACATTGAGGGTAAAAATGTaGACTAGACAGAATATGGCC +
Preference number: 5 (lower is better)
Translates to: LPIRGTSCTFIAIFLFITLRVKM*TRQNMA
Trigger: GGCCATATTCTGTCTAGTCAACATTTTTACCCTCAA...TGTTATGAATAAGAAAATTGCAATGAATGTACAACTCGTCCCTCTAATGGGCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGAAAAGTATCATTTGTaGATACATCTGCCTGTGTGC +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMEKYHL*IHLPVC
Trigger: GCACACAGGCAGATGTATCAACAAATGATACTTTTC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGTGGGAAAAGTATCATTaGTTGATACATCTGCCTGTG +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMWEKYH*LIHLPV
Trigger: CACAGGCAGATGTATCAACAAATGATACTTTTCCCA...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS-3UTR CAA 90 bp CATTCTACCTATATATCTCCATGTACTCATGTGAATATAGCCATGGATCCTATACTTTGTGCAACTGCTTaGCCAATTCAAATTGATGAT +
Preference number: 5 (lower is better)
Translates to: HSTYISPCTHVNIAMDPILCATA*PIQIDD
Trigger: ATCATCAATTTGAATTGGCAAAGCAGTTGCACAAAG...TATAGGATCCATGGCTATATTCACATGAGTACATGGAGATATATAGGTAGAATG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000070801.11
CDS-3UTR CAA 90 bp TTTACTGCAAATTGTGCAAAAGATACTATAATACTGTGCGGTAGGACAGTTATGGAACATCTTCTTTCGTaGCTTCATGTTCATATCTGT +
Preference number: 5 (lower is better)
Translates to: FTANCAKDTIILCGRTVMEHLLS*LHVHIC
Trigger: ACAGATATGAACATGAAGCAACGAAAGAAGATGTTC...CATAACTGTCCTACCGCACAGTATTATAGTATCTTTTGCACAATTTGCAGTAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238864.2
CDS CAA 72 bp ACGGAATGGTTTGGGCACCACAGTGCCTCTACCAACTaGGAGGACAAGATGGTTGTAACCCAGACTCTCGAG +
Preference number: 6 (lower is better)
Translates to: TEWFGHHSASTN*EDKMVVTQTLE
Trigger: CTCGAGAGTCTGGGTTACAACCATCTTGTCCTCCAAGTTGGTAGAGGCACTGTGGTGCCCAAACCATTCCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000145724.7
ENSMUST00000154827.8
CDS TCA 72 bp AAACAGCTTCCTGCACCTGTAAACATCCAGAGTGAATaGCTCAGTACGGAATGGTTTGGGCACCACAGTGCC +
Preference number: 6 (lower is better)
Translates to: KQLPAPVNIQSE*LSTEWFGHHSA
Trigger: GGCACTGTGGTGCCCAAACCATTCCGTACTGAGTCATTCACTCTGGATGTTTACAGGTGCAGGAAGCTGTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145724.7
CDS CAA 90 bp ATGCAGAAAATTTTTCTGGCTGGCCAGGAGGATAACATTTCAGTGTaGATAAATCCATTGACTGTAACAGCCCAGGAAGCGTGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: MQKIFLAGQEDNISV*INPLTVTAQEACCR
Trigger: CCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGATTTATCAACACTGAAATGTTATCCTCCTGGCCAGCCAGAAAAATTTTCTGCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000123710.8
ENSMUST00000149330.8
CDS CAA 90 bp TTTCTGGCTGGCCAGGAGGATAACATTTCAGTGTTGATAAATCCATaGACTGTAACAGCCCAGGAAGCGTGCTGCAGGTACAATAAAAGA +
Preference number: 6 (lower is better)
Translates to: FLAGQEDNISVLINP*TVTAQEACCRYNKR
Trigger: TCTTTTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGATTTATCAACACTGAAATGTTATCCTCCTGGCCAGCCAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000123710.8
ENSMUST00000149330.8
CDS GCA 72 bp ATAAATCCATTGACTGTAACAGCCCAGGAAGCGTGCTaGAGGTACAATAAAAGAGATGGCCTTCTTTGTGCA +
Preference number: 6 (lower is better)
Translates to: INPLTVTAQEAC*RYNKRDGLLCA
Trigger: TGCACAAAGAAGGCCATCTCTTTTATTGTACCTGCAGCACGCTTCCTGGGCTGTTACAGTCAATGGATTTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000070801.11
ENSMUST00000123710.8
ENSMUST00000149330.8
CDS GCA 72 bp TCATTAACTTTTCATTTACAACTACCACAAGTGGTTTaGCTTTCTCCAGACTCTCCAAACAGCTTCCTGCAC +
Preference number: 6 (lower is better)
Translates to: SLTFHLQLPQVV*LSPDSPNSFLH
Trigger: GTGCAGGAAGCTGTTTGGAGAGTCTGGAGAAAGGCAAACCACTTGTGGTAGTTGTAAATGAAAAGTTAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000070801.11
ENSMUST00000154827.8