RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH3B3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037263

Ensembl transcript IDs: ENSMUST00000025794.7, ENSMUST00000179433.8, ENSMUST00000189124.2

Found 164 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGACTCAGCCTCTCCACAGGCAGGACTTGCAGAGGGATCGGGCTGTaGCAGGGAGAGCCTGCTCTCCAGGATAGGGAATCTCAGGGTCTG +
Preference number: 1 (lower is better)
Translates to: RLSLSTGRTCRGIGL*QGEPALQDRESQGL
Trigger: CAGACCCTGAGATTCCCTATCCTGGAGAGCAGGCTCTCCCTGTCACAGCCCGATCCCTCTGCAAGTCCTGCCTGTGGAGAGGCTGAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 90 bp TCGATCCCACTCCTCCAAAAGGAAGGCTGGACAGGGTCATGTACATaGAGCCATCGTTCCCACAGAAGCCCCCGCTGCTGGTCCGGGCCA +
Preference number: 1 (lower is better)
Translates to: SIPLLQKEGWTGSCT*SHRSHRSPRCWSGP
Trigger: TGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAGTGGGATCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR GCA 90 bp GGGAGTGAGAAGACAGCTCACAGCTTCTGGCTGTGTGTCTGGGGCTaGGGCACTGGAGGCTCCCAGTGTTTCTGTACCTCACCGAGTACC +
Preference number: 1 (lower is better)
Translates to: GSEKTAHSFWLCVWG*GTGGSQCFCTSPST
Trigger: GGTACTCGGTGAGGTACAGAAACACTGGGAGCCTCCAGTGCCGCAGCCCCAGACACACAGCCAGAAGCTGTGAGCTGTCTTCTCACTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 90 bp GAAGACAGCTCACAGCTTCTGGCTGTGTGTCTGGGGCTGCGGCACTaGAGGCTCCCAGTGTTTCTGTACCTCACCGAGTACCTCCTAGGG +
Preference number: 1 (lower is better)
Translates to: EDSSQLLAVCLGLRH*RLPVFLYLTEYLLG
Trigger: CCCTAGGAGGTACTCGGTGAGGTACAGAAACACTGGGAGCCTCCAGTGCCGCAGCCCCAGACACACAGCCAGAAGCTGTGAGCTGTCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 90 bp TTAGGTCCAGAAAGGTGCCTCCAGTATGAAGGGTCTCAGCCCAGGTaGGCTGTGTGCCAGGGTCAGGGACAGGAGACTCACCAATGTAGC +
Preference number: 1 (lower is better)
Translates to: LGPERCLQYEGSQPR*AVCQGQGQETHQCS
Trigger: GCTACATTGGTGAGTCTCCTGTCCCTGACCCTGGCACACAGCCCACCTGGGCTGAGACCCTTCATACTGGAGGCACCTTTCTGGACCTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 90 bp TTACACGGGGTGGCCTTCCCGAGAGCATCAGGTGGGTCCCAAAGATaGCTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTGGGCTAC +
Preference number: 1 (lower is better)
Translates to: LHGVAFPRASGGSQR*LPTLSCKATLCVGY
Trigger: GTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCATCTTTGGGACCCACCTGATGCTCTCGGGAAGGCCACCCCGTGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp TCAGTTGAGGACTCAGACTTTAGGTCCAGAAAGGTGCCTCCAGTATaGAGGGTCTCAGCCCAGGTGGGCTGTGTGCCAGGGTCAGGGACA +
Preference number: 1 (lower is better)
Translates to: SVEDSDFRSRKVPPV*RVSAQVGCVPGSGT
Trigger: TGTCCCTGACCCTGGCACACAGCCCACCTGGGCTGAGACCCTTCATACTGGAGGCACCTTTCTGGACCTAAAGTCTGAGTCCTCAACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CCA 90 bp AGCTTAAATAGGTTGGGGCAGGGCAGCAGGAGAGAGGAGTCGGTGTaGTGTTTACAGAAGGGTGCAGCTCTCAGAGCCGATAGCCCATCT +
Preference number: 1 (lower is better)
Translates to: SLNRLGQGSRREESV*CLQKGAALRADSPS
Trigger: AGATGGGCTATCGGCTCTGAGAGCTGCACCCTTCTGTAAACACCACACCGACTCCTCTCTCCTGCTGCCCTGCCCCAACCTATTTAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000189124.2
3UTR GCA 90 bp GCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGTGCTATaGTATGAGAAGGGGCTGGACCAGCCATCTACATGTCATGCCTGG +
Preference number: 1 (lower is better)
Translates to: ASLSKQKVGRLLRVL*YEKGLDQPSTCHAW
Trigger: CCAGGCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCACCCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 90 bp AAACACACACCCAGTTCAGGGTTGAAGAGAGGGTGTCTTTGCCAGTaGGTGTCTGGCATAACCTCTCCTTGTGGTTGGAGCTCAGCCATT +
Preference number: 1 (lower is better)
Translates to: KHTPSSGLKRGCLCQ*VSGITSPCGWSSAI
Trigger: AATGGCTGAGCTCCAACCACAAGGAGAGGTTATGCCAGACACCCACTGGCAAAGACACCCTCTCTTCAACCCTGAACTGGGTGTGTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 90 bp GCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACCACATGTATaGCTGATAACCCACAGAGGTCAGAGAGGGCATCAGATCCCCTGG +
Preference number: 1 (lower is better)
Translates to: AHVCGFLPCICAPHV*LITHRGQRGHQIPW
Trigger: CCAGGGGATCTGATGCCCTCTCTGACCTCTGTGGGTTATCAGGCATACATGTGGTGCACAGATACATGGTAGAAAACCACACACATGTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp ACCTGTAGTTCCAGTTCTTGGGAAGCTCAGGCAGGAGGATTGCCATaGGTTCCAGAACAGCCAAGATTACATACCAAGACCTTGCCTCAG +
Preference number: 1 (lower is better)
Translates to: TCSSSSWEAQAGGLP*VPEQPRLHTKTLPQ
Trigger: CTGAGGCAAGGTCTTGGTATGTAATCTTGGCTGTTCTGGAACTCATGGCAATCCTCCTGCCTGAGCTTCCCAAGAACTGGAACTACAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 90 bp CTCACACCTGTAGTTCCAGTTCTTGGGAAGCTCAGGCAGGAGGATTaGCATGAGTTCCAGAACAGCCAAGATTACATACCAAGACCTTGC +
Preference number: 1 (lower is better)
Translates to: LTPVVPVLGKLRQED*HEFQNSQDYIPRPC
Trigger: GCAAGGTCTTGGTATGTAATCTTGGCTGTTCTGGAACTCATGGCAATCCTCCTGCCTGAGCTTCCCAAGAACTGGAACTACAGGTGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 90 bp TGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTaGACCACATGTATGCCTGATAACCCACAGAGGTCAGAGAGGGCA +
Preference number: 1 (lower is better)
Translates to: CVCVCTCVWFSTMYL*TTCMPDNPQRSERA
Trigger: TGCCCTCTCTGACCTCTGTGGGTTATCAGGCATACATGTGGTGCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp GCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTaGGACAGCAGAGCTGTGTTCTCTCATAACACTGAAGACACAAAT +
Preference number: 1 (lower is better)
Translates to: ALSYARLRRQISQSG*DSRAVFSHNTEDTN
Trigger: ATTTGTGTCTTCAGTGTTATGAGAGAACACAGCTCTGCTGTCTCAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp TGTGACAGGGAGAGCCTGCTCTCCAGGATAGGGAATCTCAGGGTCTaGGCTATGAGGACTCAAGATTTAATGAATTTTGACCTTATGAGG +
Preference number: 1 (lower is better)
Translates to: CDRESLLSRIGNLRV*AMRTQDLMNFDLMR
Trigger: CCTCATAAGGTCAAAATTCATTAAATCTTGAGTCCTCATAGCTCAGACCCTGAGATTCCCTATCCTGGAGAGCAGGCTCTCCCTGTCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CCA 90 bp CCCAAAGATGACTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTaGGCTACAGGCTGTGTGAAACCTAACTCACTAGTGATACATTTT +
Preference number: 1 (lower is better)
Translates to: PKDDFPPSVAKLHCV*ATGCVKPNSLVIHF
Trigger: AAAATGTATCACTAGTGAGTTAGGTTTCACACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCATCTTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp GGAGTTGTGAGCAACTGCTCTGTCTTTTGGGATCCTGTTACGATCTaGCAAAGTAAGTCCCCCTTAGTCACTAGATCTGCCCAAACTTAT +
Preference number: 1 (lower is better)
Translates to: GVVSNCSVFWDPVTI*QSKSPLVTRSAQTY
Trigger: ATAAGTTTGGGCAGATCTAGTGACTAAGGGGGACTTACTTTGTCAGATCGTAACAGGATCCCAAAAGACAGAGCAGTTGCTCACAACTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 90 bp TCACACACACTTGACAAAATACAACTGAACTACATCCTCACCCTCTaGTTCTCTCTGAGGATGACACCTGTGACTGAAGTGAGCATTGAA +
Preference number: 1 (lower is better)
Translates to: SHTLDKIQLNYILTL*FSLRMTPVTEVSIE
Trigger: TTCAATGCTCACTTCAGTCACAGGTGTCATCCTCAGAGAGAAGCAGAGGGTGAGGATGTAGTTCAGTTGTATTTTGTCAAGTGTGTGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 90 bp GAATCTCAGGGTCTGAGCTATGAGGACTCAAGATTTAATGAATTTTaGCCTTATGAGGTATGGGACAATAGAGGGTTTGAGTCCTGGGAC +
Preference number: 1 (lower is better)
Translates to: ESQGLSYEDSRFNEF*PYEVWDNRGFESWD
Trigger: GTCCCAGGACTCAAACCCTCTATTGTCCCATACCTCATAAGGTCAAAATTCATTAAATCTTGAGTCCTCATAGCTCAGACCCTGAGATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR GCA 90 bp TATTTGGAATTGAGGAGTCACAGACCAAGAAACACAGTGAGGAGATaGCTACCACCAAAAGCTAGAACTCAGTTGAGGACTCAGACTTTA +
Preference number: 1 (lower is better)
Translates to: YLELRSHRPRNTVRR*LPPKARTQLRTQTL
Trigger: TAAAGTCTGAGTCCTCAACTGAGTTCTAGCTTTTGGTGGTAGGCATCTCCTCACTGTGTTTCTTGGTCTGTGACTCCTCAATTCCAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CCA 90 bp CTGGCAGTTGTGGAGGAGACTTTGCAGGCAGGGGGATTGCTTCAATaGGGGAAATTATTTATTTCCTATTTACATGTGAGATCTAGTCAA +
Preference number: 1 (lower is better)
Translates to: LAVVEETLQAGGLLQ*GKLFISYLHVRSSQ
Trigger: TTGACTAGATCTCACATGTAAATAGGAAATAAATAATTTCCCCCATTGAAGCAATCCCCCTGCCTGCAAAGTCTCCTCCACAACTGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCTGGCAGCAGCAGTCATaGCGATCTTGCCTACCCGAG +
Preference number: 2 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGWQQQS*RSCLPE
Trigger: CTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCA...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp TCCACTAACACTGTGGGGGCTGCAGACTCAGGAATAGACTCAGCCTCTCCACAGCCCAGGTGGGCTGTGTaGCAGGGTCAGGGACAGGAG +
Preference number: 2 (lower is better)
Translates to: STNTVGAADSGIDSASPQPRWAV*QGQGQE
Trigger: CTCCTGTCCCTGACCCTGGCACACAGCCCACCTGGG...CTGTGGAGAGGCTGAGTCTATTCCTGAGTCTGCAGCCCCCACAGTGTTAGTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCATGCCATGTGGGTGCTaGGAACTGAATGGAGGTTCT +
Preference number: 2 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGMPCGC*ELNGGS
Trigger: AGAACCTCCATTCAGTTCCCAGCACCCACATGGCAT...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp CAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAGCTCAGTGTCCATCTGAGGCCTGTCCCCTaGGCCTGTGGGGGAGGAGCC +
Preference number: 2 (lower is better)
Translates to: QYKALAHESLLVSELSVHLRPVP*ACGGGA
Trigger: GGCTCCTCCCCCACAGGCTCAGGGGACAGGCCTCAG...ATGGACACTGAGCTCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp AACGGGGGCAGGGACACAGGATGGCTTACACGGGGTGGCCTTCCCGAGAGCATCCTTCCCACCCTCAGTTaGAAAGCTACACTGTGTGTG +
Preference number: 2 (lower is better)
Translates to: NGGRDTGWLTRGGLPESILPTLS*KATLCV
Trigger: CACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAG...GATGCTCTCGGGAAGGCCACCCCGTGTAAGCCATCCTGTGTCCCTGCCCCCGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CTGTGGGGGAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCTCATGTCACTTCAGGTaGGACAAAGCCACCCTCCAG +
Preference number: 2 (lower is better)
Translates to: LWGRSHLPLPAPGVWFVVSCHFR*DKATLQ
Trigger: CTGGAGGGTGGCTTTGTCCCACCTGAAGTGACATGA...GACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTCCCCCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCCTTTCTCCTTTCTCCTaGCCTCACACACACTTGACA +
Preference number: 2 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGLSPFS*PHTHLT
Trigger: TGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAG...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGTGTCCCCTGAGCCTGTaGGGGAGGAGCCACCTGCCT +
Preference number: 2 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLCPLSL*GRSHLP
Trigger: AGGCAGGTGGCTCCTCCCCCACAGGCTCAGGGGACA...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CTGTGGGGGAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCCAGCCCAGCAATCCCTaGAGCCTCTTGAAATGCTTC +
Preference number: 2 (lower is better)
Translates to: LWGRSHLPLPAPGVWFVVQPSNP*SLLKCF
Trigger: GAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTG...GACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTCCCCCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GCGGCACTGGAGGCTCCCAGTGTTTCTGTACCTCACCGAGTACCTCCTAGGGTCTCATGTCACTTCAGGTaGGACAAAGCCACCCTCCAG +
Preference number: 2 (lower is better)
Translates to: AALEAPSVSVPHRVPPRVSCHFR*DKATLQ
Trigger: CTGGAGGGTGGCTTTGTCCCACCTGAAGTGACATGA...GACCCTAGGAGGTACTCGGTGAGGTACAGAAACACTGGGAGCCTCCAGTGCCGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCCCAAATAATCTGATCTaGGTCCATGGTCATGTCACT +
Preference number: 2 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGPNNLI*VHGHVT
Trigger: AGTGACATGACCATGGACCCAGATCAGATTATTTGG...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GTGTTTCTGTACCTCACCGAGTACCTCCTAGGGTCTAAGAAGCAGGAGACAGAGTTCTGGCTGTGTGTCTaGGGCTGCGGCACTGGAGGC +
Preference number: 2 (lower is better)
Translates to: VFLYLTEYLLGSKKQETEFWLCV*GCGTGG
Trigger: GCCTCCAGTGCCGCAGCCCCAGACACACAGCCAGAA...CTCTGTCTCCTGCTTCTTAGACCCTAGGAGGTACTCGGTGAGGTACAGAAACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGTCTCCCTCATCACTCTaGCCACCGATGGCCACACGG +
Preference number: 2 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLSPSSL*PPMATR
Trigger: CCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGA...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CAA 90 bp TCACAGGCTGGACTAGGCACTCGCCTTTCAGGAACCACTGGGGACTaGGAAGCAGATGAAAGCTTAAATAGGTTGGGGCAGGGCAGCAGG +
Preference number: 2 (lower is better)
Translates to: SQAGLGTRLSGTTGD*EADESLNRLGQGSR
Trigger: CCTGCTGCCCTGCCCCAACCTATTTAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGTTCCTGAAAGGCGAGTGCCTAGTCCAGCCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp ATGACTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTGGGCTACAGGCTGTGAGGTCTGCAGGTTCTTaGGGGCCAGGTCCACCTCAT +
Preference number: 2 (lower is better)
Translates to: MTSHPQLQSYTVCGLQAVRSAGS*GPGPPH
Trigger: ATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCT...CACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACCCTGTGTGTCTGGGGCTaGGGCACTGGAGGCTCCCAG +
Preference number: 2 (lower is better)
Translates to: VCVCVCTCVWFSTMYLCTLCVWG*GTGGSQ
Trigger: CTGGGAGCCTCCAGTGCCGCAGCCCCAGACACACAG...GGTGCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp GCTGCGGCACTGGAGGCTCCCAGTGTTTCTGTACCTCACCGAGTACCTCCTAGGTTAGGTCCAGAAAGGTaGCTCCAGTATGAAGGGTCT +
Preference number: 2 (lower is better)
Translates to: AAALEAPSVSVPHRVPPRLGPER*LQYEGS
Trigger: AGACCCTTCATACTGGAGGCACCTTTCTGGACCTAA...CCTAGGAGGTACTCGGTGAGGTACAGAAACACTGGGAGCCTCCAGTGCCGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GTGCTATGCTATGAGAAGGGGCTGGACCAGCCATCTACATGTCATGCCTGGCTAGGGGTGTTCACAGGCTaGACTAGGCACTCGCCTTTC +
Preference number: 2 (lower is better)
Translates to: VLCYEKGLDQPSTCHAWLGVFTG*TRHSPF
Trigger: GAAAGGCGAGTGCCTAGTCCAGCCTGTGAACACCCC...TAGCCAGGCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GGAGCTCAGCCATTAGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTGCTATGAGAAGGGGCTaGACCAGCCATCTACATGTC +
Preference number: 2 (lower is better)
Translates to: GAQPLGATAQYKALAHESAMRRG*TSHLHV
Trigger: GACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGC...AGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCTAATGGCTGAGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAAGAGCTCAGTGTCCATaGGCCCAGGAAGGGAGCACA +
Preference number: 2 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRRAQCP*AQEGST
Trigger: TGTGCTCCCTTCCTGGGCCCATGGACACTGAGCTCT...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCTTCTGGCTGTGTGTCTaGGGCTGCGGCACTGGAGGC +
Preference number: 2 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCFWLCV*GCGTGG
Trigger: GCCTCCAGTGCCGCAGCCCCAGACACACAGCCAGAA...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACCACTGTCCCTCACTGGTaGCCAGACCCTATGCCCCAC +
Preference number: 2 (lower is better)
Translates to: VCVCVCTCVWFSTMYLCTTVPHW*PDPMPH
Trigger: GTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGT...GGTGCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACTGTCCCTCACTGGTaGCCAGACCCTATGCCCCAC +
Preference number: 2 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCTVPHW*PDPMPH
Trigger: GTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGT...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp GTGTTTCTGTACCTCACCGAGTACCTCCTAGGGTCTAAGAAGCAGGAGACAGAGGTGGGTGCTGGGAACTaGATGGAGGTTCTGAGGAAG +
Preference number: 2 (lower is better)
Translates to: VFLYLTEYLLGSKKQETEVGAGN*MEVLRK
Trigger: CTTCCTCAGAACCTCCATTCAGTTCCCAGCACCCAC...CTCTGTCTCCTGCTTCTTAGACCCTAGGAGGTACTCGGTGAGGTACAGAAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAGCTCAGTGTCCATGGGGTGTTCACAGGCTaGACTAGGCACTCGCCTTTC +
Preference number: 2 (lower is better)
Translates to: QYKALAHESLLVSELSVHGVFTG*TRHSPF
Trigger: GAAAGGCGAGTGCCTAGTCCAGCCTGTGAACACCCC...ATGGACACTGAGCTCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGATGTCAAAGGAGAACTTaGCGTGGTACCTGCCCATCC +
Preference number: 2 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRCQRRT*RGTCPS
Trigger: GGATGGGCAGGTACCACGGCAAGTTCTCCTTTGACA...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGTGTAGTTCCAGTTCTTaGGAAGCTCAGGCAGGAGGA +
Preference number: 2 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLCSSSS*EAQAGG
Trigger: TCCTCCTGCCTGAGCTTCCCAAGAACTGGAACTACA...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAGACCAAGAAACACAGTaGGGAGATGCCTACCACCAA +
Preference number: 2 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRDQETQ*GDAYHQ
Trigger: TTGGTGGTAGGCATCTCCTCACTGTGTTTCTTGGTC...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGTGCAGGCAGGGGGATTaGTTCAATGGGGGAAATTAT +
Preference number: 2 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLCRQGD*FNGGNY
Trigger: ATAATTTCCCCCATTGAAGCAATCCCCCTGCCTGCA...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp ATGACTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTGGGCTACAGGCTGTGAGGATAATTCCAGGGTaGAATGATAAGCACCAGGCC +
Preference number: 2 (lower is better)
Translates to: MTSHPQLQSYTVCGLQAVRIIPG*NDKHQA
Trigger: GGCCTGGTGCTTATCATTGCACCCTGGAATTATCCT...CACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAATAGATAGTGTGACATaGCATGTGGGTGCTGGGAAC +
Preference number: 2 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRIDSVT*HVGAGN
Trigger: GTTCCCAGCACCCACATGGCATGTCACACTATCTAT...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACGGGGTGTTCACAGGCTaGACTAGGCACTCGCCTTTC +
Preference number: 2 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNGVFTG*TRHSPF
Trigger: GAAAGGCGAGTGCCTAGTCCAGCCTGTGAACACCCC...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACAGAGCTCAGTGTCCATaGGCCCAGGAAGGGAGCACA +
Preference number: 2 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNRAQCP*AQEGST
Trigger: TGTGCTCCCTTCCTGGGCCCATGGACACTGAGCTCT...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACCACCCAGTTCAGGGTTaGAGAGAGGGTGTCTTTGCC +
Preference number: 2 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNHPVQG*REGVFA
Trigger: GGCAAAGACACCCTCTCTTCAACCCTGAACTGGGTG...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp CTGAGGATGACACCTGTGACTGAAGTGAGCATTGAATGGATTGCCAGGATCTTGCCTCTGACCATGAGCTaGAAGAGAATCCTTCCCTCT +
Preference number: 2 (lower is better)
Translates to: LRMTPVTEVSIEWIARILPLTMS*KRILPS
Trigger: AGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGG...CAAGATCCTGGCAATCCATTCAATGCTCACTTCAGTCACAGGTGTCATCCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CTGAGGATGACACCTGTGACTGAAGTGAGCATTGAATGGATTGCCAGGATCTTGAGAGAGGAGTCGGTGTaGTGTTTACAGAAGGGTGCA +
Preference number: 2 (lower is better)
Translates to: LRMTPVTEVSIEWIARILREESV*CLQKGA
Trigger: TGCACCCTTCTGTAAACACCACACCGACTCCTCTCT...CAAGATCCTGGCAATCCATTCAATGCTCACTTCAGTCACAGGTGTCATCCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp TGTGTGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTACACTCTCTTGGGAGTaGGAAGACAGCTCACAGCTT +
Preference number: 2 (lower is better)
Translates to: CVRVCVCVHMCVVFYHVSTLSWE*EDSSQL
Trigger: AAGCTGTGAGCTGTCTTCTCACTCCCAAGAGAGTGT...AGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp TGTGTGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTACAGGGTCATGTACATaGAGCCATCGTTCCCACAGA +
Preference number: 2 (lower is better)
Translates to: CVRVCVCVHMCVVFYHVSTGSCT*SHRSHR
Trigger: TCTGTGGGAACGATGGCTTCATGTACATGACCCTGT...AGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp TGTGTGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTCCTCTGACCATGAGCTaGAAGAGAATCCTTCCCTCT +
Preference number: 2 (lower is better)
Translates to: CVRVCVCVHMCVVFYHVSPLTMS*KRILPS
Trigger: AGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGG...AGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp TCCTGTGTTTACATAACCTTTGTCTTAAGACACATCACCCCATATCACCTTTCTGGCAGGGACACAGGATaGCTTACACGGGGTGGCCTT +
Preference number: 2 (lower is better)
Translates to: SCVYITFVLRHITPYHLSGRDTG*LTRGGL
Trigger: AAGGCCACCCCGTGTAAGCCATCCTGTGTCCCTGCC...AGAAAGGTGATATGGGGTGATGTGTCTTAAGACAAAGGTTATGTAAACACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACAGCGGCTTTTCCCGCTaGTTCATGAACTCGATGGCT +
Preference number: 2 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNSGFSR*FMNSMA
Trigger: AGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCT...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCCCCCCACTAAAGGTATaGTCATCAAGTTCACAGGAT +
Preference number: 2 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCPPLKV*SSSSQD
Trigger: ATCCTGTGAACTTGATGATCATACCTTTAGTGGGGG...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp TCCTGTGTTTACATAACCTTTGTCTTAAGACACATCACCCCATATCACCTTTCTAAGGTGCCTCCAGTATaGAGGGTCTCAGCCCAGGTG +
Preference number: 2 (lower is better)
Translates to: SCVYITFVLRHITPYHLSKVPPV*RVSAQV
Trigger: CACCTGGGCTGAGACCCTTCATACTGGAGGCACCTT...AGAAAGGTGATATGGGGTGATGTGTCTTAAGACAAAGGTTATGTAAACACAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCTCTACATGTCATGCCTaGCTACAGGTAGCTCAGAAA +
Preference number: 2 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCSTCHA*LQVAQK
Trigger: TTTCTGAGCTACCTGTAGCCAGGCATGACATGTAGA...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp CAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAGCTCAGTGTCCATCCAAATAATCTGATCTaGGTCCATGGTCATGTCACT +
Preference number: 2 (lower is better)
Translates to: QYKALAHESLLVSELSVHPNNLI*VHGHVT
Trigger: AGTGACATGACCATGGACCCAGATCAGATTATTTGG...ATGGACACTGAGCTCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACCACAGCTATTTGGAATTaGGGAGTCACAGACCAAGAA +
Preference number: 2 (lower is better)
Translates to: VCVCVCTCVWFSTMYLCTTAIWN*GVTDQE
Trigger: TTCTTGGTCTGTGACTCCTCAATTCCAAATAGCTGT...GGTGCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CAA 90 bp CTGACTGAATCCTCTGACCATGAGCTGCAAGAGAATCCTTCCCTCTaGAACTTGTCCGTATCAGGACATTTAATAGAAGTCACAGGAAAG +
Preference number: 2 (lower is better)
Translates to: LTESSDHELQENPSL*NLSVSGHLIEVTGK
Trigger: CTTTCCTGTGACTTCTATTAAATGTCCTGATACGGACAAGTTCAAGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGGATTCAGTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp TCCTGTGTTTACATAACCTTTGTCTTAAGACACATCACCCCATATCACCTTTCTTTGTGGAGGAGACTTTaGAGGCAGGGGGATTGCTTC +
Preference number: 2 (lower is better)
Translates to: SCVYITFVLRHITPYHLSLWRRL*RQGDCF
Trigger: GAAGCAATCCCCCTGCCTGCAAAGTCTCCTCCACAA...AGAAAGGTGATATGGGGTGATGTGTCTTAAGACAAAGGTTATGTAAACACAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CAA 90 bp GAATCCTCTGACCATGAGCTGCAAGAGAATCCTTCCCTCTTGAACTaGTCCGTATCAGGACATTTAATAGAAGTCACAGGAAAGCAACTA +
Preference number: 2 (lower is better)
Translates to: ESSDHELQENPSLLN*SVSGHLIEVTGKQL
Trigger: TAGTTGCTTTCCTGTGACTTCTATTAAATGTCCTGATACGGACAAGTTCAAGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR GCA 90 bp CTCACCTCTCCAGTCTCCTCCTGTGTTTACATAACCTTTGTCTTAAGACACATCTGGAGCCTCTTGAAATaGTTCTGGTTGATGATTCTG +
Preference number: 2 (lower is better)
Translates to: LTSPVSSCVYITFVLRHIWSLLK*FWLMIL
Trigger: CAGAATCATCAACCAGAAGCATTTCAAGAGGCTCCA...GATGTGTCTTAAGACAAAGGTTATGTAAACACAGGAGGAGACTGGAGAGGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR-3UTR CCA 90 bp TCCTGTGTTTACATAACCTTTGTCTTAAGACACATCACCCCATATCACCTTTCTGGGGGATTGCTTCAATaGGGGAAATTATTTATTTCC +
Preference number: 2 (lower is better)
Translates to: SCVYITFVLRHITPYHLSGGLLQ*GKLFIS
Trigger: GGAAATAAATAATTTCCCCCATTGAAGCAATCCCCC...AGAAAGGTGATATGGGGTGATGTGTCTTAAGACAAAGGTTATGTAAACACAGGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 72 bp AGGGAGCACAGTAGGAACGGGGGCAGGGACACAGGATaGCTTACACGGGGTGGCCTTCCCGAGAGCATCAGG +
Preference number: 3 (lower is better)
Translates to: REHSRNGGRDTG*LTRGGLPESIR
Trigger: CCTGATGCTCTCGGGAAGGCCACCCCGTGTAAGCCATCCTGTGTCCCTGCCCCCGTTCCTACTGTGCTCCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCGTTGTGGAGGAGACTTaGCAGGCAGGGGGATTGCTT +
Preference number: 3 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGVVEET*QAGGLL
Trigger: AAGCAATCCCCCTGCCTGCAAAGTCTCCTCCACAAC...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp CTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTaGCCCAGGCATCAAACACACACCCAGTTCAGGGTT +
Preference number: 3 (lower is better)
Translates to: LTGDQTLCPTPP*PRHQTHTQFRV
Trigger: AACCCTGAACTGGGTGTGTGTTTGATGCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp CTCTCCACAGGCAGGACTTGCAGAGGGATCGGGCTGTaGCAGGGAGAGCCTGCTCTCCAGGATAGGGAATCT +
Preference number: 3 (lower is better)
Translates to: LSTGRTCRGIGL*QGEPALQDRES
Trigger: AGATTCCCTATCCTGGAGAGCAGGCTCTCCCTGTCACAGCCCGATCCCTCTGCAAGTCCTGCCTGTGGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CCA 72 bp TCACAGCTTCTGGCTGTGTGTCTGGGGCTGCGGCACTaGAGGCTCCCAGTGTTTCTGTACCTCACCGAGTAC +
Preference number: 3 (lower is better)
Translates to: SQLLAVCLGLRH*RLPVFLYLTEY
Trigger: GTACTCGGTGAGGTACAGAAACACTGGGAGCCTCCAGTGCCGCAGCCCCAGACACACAGCCAGAAGCTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp CTGTGGGGGAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCACTTCCCACCCTCAGTaGCAAAGCTACACTGTGTGT +
Preference number: 3 (lower is better)
Translates to: LWGRSHLPLPAPGVWFVVTSHPQ*QSYTVC
Trigger: ACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGT...GACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTCCCCCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp CTCCTCCAAAAGGAAGGCTGGACAGGGTCATGTACATaGAGCCATCGTTCCCACAGAAGCCCCCGCTGCTGG +
Preference number: 3 (lower is better)
Translates to: LLQKEGWTGSCT*SHRSHRSPRCW
Trigger: CCAGCAGCGGGGGCTTCTGTGGGAACGATGGCTTCATGTACATGACCCTGTCCAGCCTTCCTTTTGGAGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR GCA 72 bp TACCTCCTAGGGTCTAAGAAGCAGGAGACAGAGCCCTaGCACTGTCCCTCACTGGTGACCAGACCCTATGCC +
Preference number: 3 (lower is better)
Translates to: YLLGSKKQETEP*HCPSLVTRPYA
Trigger: GGCATAGGGTCTGGTCACCAGTGAGGGACAGTGGCAGGGCTCTGTCTCCTGCTTCTTAGACCCTAGGAGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 72 bp CCACGAATCTTTGCTAGTGTCAGAGCTCAGTGTCCATaGGCCCAGGAAGGGAGCACAGTAGGAACGGGGGCA +
Preference number: 3 (lower is better)
Translates to: PRIFASVRAQCP*AQEGSTVGTGA
Trigger: TGCCCCCGTTCCTACTGTGCTCCCTTCCTGGGCCCATGGACACTGAGCTCTGACACTAGCAAAGATTCGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp GAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCTCACCTCTGAAAGCTTAAATAGGTaGGGGCAGGGCAGCAGGAGA +
Preference number: 3 (lower is better)
Translates to: EEPPASSSSGCLVCSLTSESLNR*GQGSRR
Trigger: TCTCCTGCTGCCCTGCCCCAACCTATTTAAGCTTTC...AGAGGTGAGACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp GGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTaGGGGTGCTATGCTATGAGAAGGGGCTGGACCAGC +
Preference number: 3 (lower is better)
Translates to: GLLCLSRRLEGC*GCYAMRRGWTS
Trigger: GCTGGTCCAGCCCCTTCTCATAGCATAGCACCCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp GCAGAAGGTTGGAAGGCTGCTGAGGGTGCTATGCTATaGGAAGGGGCTGGACCAGCCATCTACATGTCATGC +
Preference number: 3 (lower is better)
Translates to: AEGWKAAEGAML*EGAGPAIYMSC
Trigger: GCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCACCCTCAGCAGCCTTCCAACCTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp GTGGCCTTCCCGAGAGCATCAGGTGGGTCCCAAAGATaGCTTCCCACCCTCAGTTGCAAAGCTACACTGTGT +
Preference number: 3 (lower is better)
Translates to: VAFPRASGGSQR*LPTLSCKATLC
Trigger: ACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCATCTTTGGGACCCACCTGATGCTCTCGGGAAGGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp GGAGCTTCCTGTACCCTGCTCTGTCCTATGCCAGGCTaGGGAGACAAATATCCCAAAGTGGCTGAGACAGCA +
Preference number: 3 (lower is better)
Translates to: GASCTLLCPMPG*GDKYPKVAETA
Trigger: TGCTGTCTCAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTACAGGAAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 72 bp ACCACTAGGGAGCTTCCTGTACCCTGCTCTGTCCTATaGCAGGCTGAGGAGACAAATATCCCAAAGTGGCTG +
Preference number: 3 (lower is better)
Translates to: TTRELPVPCSVL*QAEETNIPKWL
Trigger: CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTACAGGAAGCTCCCTAGTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 72 bp AGGGTTGAAGAGAGGGTGTCTTTGCCAGTGGGTGTCTaGCATAACCTCTCCTTGTGGTTGGAGCTCAGCCAT +
Preference number: 3 (lower is better)
Translates to: RVEERVSLPVGV*HNLSLWLELSH
Trigger: ATGGCTGAGCTCCAACCACAAGGAGAGGTTATGCCAGACACCCACTGGCAAAGACACCCTCTCTTCAACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp GGAGCTCAGCCATTAGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTGGAACCACTGGGGACTaGGAAGCAGATGAAAGCTTA +
Preference number: 3 (lower is better)
Translates to: GAQPLGATAQYKALAHESGTTGD*EADESL
Trigger: TAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGTTCC...AGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCTAATGGCTGAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGAGTTGTGGAGGAGACTTaGCAGGCAGGGGGATTGCTT +
Preference number: 3 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRVVEET*QAGGLL
Trigger: AAGCAATCCCCCTGCCTGCAAAGTCTCCTCCACAAC...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp ACTGAATCCTCTGACCATGAGCTGCAAGAGAATCCTTCCCTCTTGAACTTGTCCCAGGTCTGCAGGTTCTaGAGGGCCAGGTCCACCTCA +
Preference number: 3 (lower is better)
Translates to: TESSDHELQENPSLLNLSQVCRF*RARSTS
Trigger: TGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTG...GGACAAGTTCAAGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGGATTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 72 bp CACACAGTCATGACCCTGAGAGCAATGGGCAGAGTGTaGAATCAAACCACTAGGGAGCTTCCTGTACCCTGC +
Preference number: 3 (lower is better)
Translates to: HTVMTLRAMGRV*NQTTRELPVPC
Trigger: GCAGGGTACAGGAAGCTCCCTAGTGGTTTGATTTCACACTCTGCCCATTGCTCTCAGGGTCATGACTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 72 bp TCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGTGCTATaGTATGAGAAGGGGCTGGACCAGCCATCTACATGT +
Preference number: 3 (lower is better)
Translates to: SKQKVGRLLRVL*YEKGLDQPSTC
Trigger: ACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCACCCTCAGCAGCCTTCCAACCTTCTGCTTAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp GTGCTATGCTATGAGAAGGGGCTGGACCAGCCATCTACATGTCATGCCTGGCTAGGAACCACTGGGGACTaGGAAGCAGATGAAAGCTTA +
Preference number: 3 (lower is better)
Translates to: VLCYEKGLDQPSTCHAWLGTTGD*EADESL
Trigger: TAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGTTCC...TAGCCAGGCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp AAACTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGAAAGCTTAAATAGGTaGGGGCAGGGCAGCAGGAGA +
Preference number: 3 (lower is better)
Translates to: KLIEGASLSKQKVGRLLRESLNR*GQGSRR
Trigger: TCTCCTGCTGCCCTGCCCCAACCTATTTAAGCTTTC...CCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAGTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp CTGAGGATGACACCTGTGACTGAAGTGAGCATTGAATGGATTGCCAGGATCTTGGCAGTCATGACGATCTaGCCTACCCGAGGACTTCCT +
Preference number: 3 (lower is better)
Translates to: LRMTPVTEVSIEWIARILAVMTI*PTRGLP
Trigger: AGGAAGTCCTCGGGTAGGCAAGATCGTCATGACTGC...CAAGATCCTGGCAATCCATTCAATGCTCACTTCAGTCACAGGTGTCATCCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 72 bp ATAGATAGTGTGACATGCCATGTGGGTGCTGGGAACTaGATGGAGGTTCTGAGGAAGAGCAGCCAGTGCTGT +
Preference number: 3 (lower is better)
Translates to: IDSVTCHVGAGN*MEVLRKSSQCC
Trigger: ACAGCACTGGCTGCTCTTCCTCAGAACCTCCATTCAGTTCCCAGCACCCACATGGCATGTCACACTATCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CCA 72 bp GACTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTaGGCTACAGGCTGTGTGAAACCTAACTCACTAGTG +
Preference number: 3 (lower is better)
Translates to: DFPPSVAKLHCV*ATGCVKPNSLV
Trigger: CACTAGTGAGTTAGGTTTCACACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 72 bp TGTGGTTTTCTACCATGTATCTGTGCACCACATGTATaGCTGATAACCCACAGAGGTCAGAGAGGGCATCAG +
Preference number: 3 (lower is better)
Translates to: CGFLPCICAPHV*LITHRGQRGHQ
Trigger: CTGATGCCCTCTCTGACCTCTGTGGGTTATCAGGCATACATGTGGTGCACAGATACATGGTAGAAAACCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCACCTTGAAATGCTTCTGGTaGATGATTCTGCCCAGGTTG +
Preference number: 3 (lower is better)
Translates to: VCVCVCTCVWFSTMYLCTLKCFW*MILPRL
Trigger: CAACCTGGGCAGAATCATCAACCAGAAGCATTTCAA...GGTGCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 72 bp AGCAACTGCTCTGTCTTTTGGGATCCTGTTACGATCTaGCAAAGTAAGTCCCCCTTAGTCACTAGATCTGCC +
Preference number: 3 (lower is better)
Translates to: SNCSVFWDPVTI*QSKSPLVTRSA
Trigger: GGCAGATCTAGTGACTAAGGGGGACTTACTTTGTCAGATCGTAACAGGATCCCAAAAGACAGAGCAGTTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR GCA 72 bp TTGAGGAGTCACAGACCAAGAAACACAGTGAGGAGATaGCTACCACCAAAAGCTAGAACTCAGTTGAGGACT +
Preference number: 3 (lower is better)
Translates to: LRSHRPRNTVRR*LPPKARTQLRT
Trigger: AGTCCTCAACTGAGTTCTAGCTTTTGGTGGTAGGCATCTCCTCACTGTGTTTCTTGGTCTGTGACTCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CCA 72 bp CCTTATGAGGTATGGGACAATAGAGGGTTTGAGTCCTaGGACAGCTATTTGGAATTGAGGAGTCACAGACCA +
Preference number: 3 (lower is better)
Translates to: PYEVWDNRGFES*DSYLELRSHRP
Trigger: TGGTCTGTGACTCCTCAATTCCAAATAGCTGTCCCAGGACTCAAACCCTCTATTGTCCCATACCTCATAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 72 bp GTTTGGGACTTTTATTTCCACTCTCCTGTGACTAAATaGCACACATGGAGTAGGGAAAAGGGCACTGGCAGT +
Preference number: 3 (lower is better)
Translates to: VWDFYFHSPVTK*HTWSREKGTGS
Trigger: ACTGCCAGTGCCCTTTTCCCTACTCCATGTGTGTCATTTAGTCACAGGAGAGTGGAAATAAAAGTCCCAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR TCA 72 bp GAGAGCCTGCTCTCCAGGATAGGGAATCTCAGGGTCTaGGCTATGAGGACTCAAGATTTAATGAATTTTGAC +
Preference number: 3 (lower is better)
Translates to: ESLLSRIGNLRV*AMRTQDLMNFD
Trigger: GTCAAAATTCATTAAATCTTGAGTCCTCATAGCTCAGACCCTGAGATTCCCTATCCTGGAGAGCAGGCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR GCA 72 bp CTTGACAAAATACAACTGAACTACATCCTCACCCTCTaGTTCTCTCTGAGGATGACACCTGTGACTGAAGTG +
Preference number: 3 (lower is better)
Translates to: LDKIQLNYILTL*FSLRMTPVTEV
Trigger: CACTTCAGTCACAGGTGTCATCCTCAGAGAGAAGCAGAGGGTGAGGATGTAGTTCAGTTGTATTTTGTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp TCCTGTGTTTACATAACCTTTGTCTTAAGACACATCACCCCATATCACCTTTCTGAAAGCTTAAATAGGTaGGGGCAGGGCAGCAGGAGA +
Preference number: 3 (lower is better)
Translates to: SCVYITFVLRHITPYHLSESLNR*GQGSRR
Trigger: TCTCCTGCTGCCCTGCCCCAACCTATTTAAGCTTTC...AGAAAGGTGATATGGGGTGATGTGTCTTAAGACAAAGGTTATGTAAACACAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR-3UTR CAA 90 bp ACAGCAGAGCTGTGTTCTCTCATAACACTGAAGACACAAATCCATAACCAAGCTACCTTCTCTGTGTTCTaGCTAATTTCTGATGGCTTC +
Preference number: 3 (lower is better)
Translates to: TAELCSLITLKTQIHNQATFSVF*LISDGF
Trigger: GAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGT...AGCTTGGTTATGGATTTGTGTCTTCAGTGTTATGAGAGAACACAGCTCTGCTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR TCA 72 bp GGTCTGAGCTATGAGGACTCAAGATTTAATGAATTTTaGCCTTATGAGGTATGGGACAATAGAGGGTTTGAG +
Preference number: 3 (lower is better)
Translates to: GLSYEDSRFNEF*PYEVWDNRGFE
Trigger: CTCAAACCCTCTATTGTCCCATACCTCATAAGGTCAAAATTCATTAAATCTTGAGTCCTCATAGCTCAGACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR CCA 90 bp CACTGTCCCTCACTGGTGACCAGACCCTATGCCCCACCCCTCCCTGACCCAGGCAGAAGCCCCCGCTGCTaGTCCGGGCCAACACCTGTT +
Preference number: 4 (lower is better)
Translates to: HCPSLVTRPYAPPLPDPGRSPRC*SGPTPV
Trigger: AACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCT...GCCTGGGTCAGGGAGGGGTGGGGCATAGGGTCTGGTCACCAGTGAGGGACAGTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp GGGGACTTGGAAGCAGATGAAAGCTTAAATAGGTTGGGGCAGGGCAGCAGGAGACACAGAAGCCCCCGCTaGTGGTCCGGGCCAACACCT +
Preference number: 4 (lower is better)
Translates to: GDLEADESLNRLGQGSRRHRSPR*WSGPTP
Trigger: AGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTG...TCTCCTGCTGCCCTGCCCCAACCTATTTAAGCTTTCATCTGCTTCCAAGTCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGCACAGAAGCCCCCGCTaGTGGTCCGGGCCAACACCT +
Preference number: 4 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLHRSPR*WSGPTP
Trigger: AGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTG...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp CTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGTGCACTCTGGCCACCGATaGCCACACGGCCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: LIEGASLSKQKVGRLLRVHSGHR*PHGHSP
Trigger: TGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTG...CACCCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp ACCACTGGGGACTTGGAAGCAGATGAAAGCTTAAATAGGTTGGGGCAGGGCAGCAGAAGCCCCCGCTGCTaGTCCGGGCCAACACCTGTT +
Preference number: 4 (lower is better)
Translates to: TTGDLEADESLNRLGQGSRSPRC*SGPTPV
Trigger: AACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCT...GCTGCCCTGCCCCAACCTATTTAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp ACGGGGACTATAGGGCGGGTAACGGAGGCCATTAAGCTTCTCCATCCCAGGGCACAGCCCAGCAATCCCTaGAGCCTCTTGAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: TGTIGRVTEAIKLLHPRAQPSNP*SLLKCF
Trigger: GAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTG...TGCCCTGGGATGGAGAAGCTTAATGGCCTCCGTTACCCGCCCTATAGTCCCCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025794.7
CDS-3UTR CCA 90 bp GAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCTCACCTCTCAGCCCAGCAATCCCTaGAGCCTCTTGAAATGCTTC +
Preference number: 4 (lower is better)
Translates to: EEPPASSSSGCLVCSLTSQPSNP*SLLKCF
Trigger: GAAGCATTTCAAGAGGCTCCAGGGATTGCTGGGCTG...AGAGGTGAGACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp GTGCTATGCTATGAGAAGGGGCTGGACCAGCCATCTACATGTCATGCCTGGCTATCTCCCTCATCACTCTaGCCACCGATGGCCACACGG +
Preference number: 4 (lower is better)
Translates to: VLCYEKGLDQPSTCHAWLSPSSL*PPMATR
Trigger: CCGTGTGGCCATCGGTGGCCAGAGTGATGAGGGAGA...TAGCCAGGCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
3UTR CAA 72 bp GCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTaGCTAGTGTCAGAGCTCAGTGTCCATGGGCCCAGG +
Preference number: 4 (lower is better)
Translates to: ATAQYKALAHES*LVSELSVHGPR
Trigger: CCTGGGCCCATGGACACTGAGCTCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CAA 72 bp CCTGACCCAGGCATCAAACACACACCCAGTTCAGGGTaGAAGAGAGGGTGTCTTTGCCAGTGGGTGTCTGGC +
Preference number: 4 (lower is better)
Translates to: PDPGIKHTPSSG*KRGCLCQWVSG
Trigger: GCCAGACACCCACTGGCAAAGACACCCTCTCTTCAACCCTGAACTGGGTGTGTGTTTGATGCCTGGGTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGAGGTCTGCAGGTTCTTaGGGGCCAGGTCCACCTCAT +
Preference number: 4 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLRSAGS*GPGPPH
Trigger: ATGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCT...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR TCA 90 bp GGAGCTCAGCCATTAGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTCTCCATAGAAACGCGTaGTGGCATTCTGCAGGGCAG +
Preference number: 4 (lower is better)
Translates to: GAQPLGATAQYKALAHESLHRNA*WHSAGQ
Trigger: CTGCCCTGCAGAATGCCATCACGCGTTTCTATGGAG...AGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCTAATGGCTGAGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp GTGCTATGCTATGAGAAGGGGCTGGACCAGCCATCTACATGTCATGCCTGGCTAACTTGCCGTGGTACCTaGCCATCCCACTCGATCCCA +
Preference number: 4 (lower is better)
Translates to: VLCYEKGLDQPSTCHAWLTCRGT*PSHSIP
Trigger: TGGGATCGAGTGGGATGGGCAGGTACCACGGCAAGT...TAGCCAGGCATGACATGTAGATGGCTGGTCCAGCCCCTTCTCATAGCATAGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025794.7
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp GGAGCTCAGCCATTAGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTGTTTGCTATTGTCCTaGAGGAAGCGGCCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: GAQPLGATAQYKALAHESCLLLS*RKRPRL
Trigger: GAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACA...AGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCTAATGGCTGAGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR GCA 90 bp GTACCCTGCTCTGTCCTATGCCAGGCTGAGGAGACAAATATCCCAAAGTGGCTGTCTGACTCGAAGCCTTaGCCAGGTCTCCATCCAGGG +
Preference number: 4 (lower is better)
Translates to: VPCSVLCQAEETNIPKWLSDSKP*PGLHPG
Trigger: CCCTGGATGGAGACCTGGGCAAGGCTTCGAGTCAGA...CAGCCACTTTGGGATATTTGTCTCCTCAGCCTGGCATAGGACAGAGCAGGGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp AGGAGCCACAGCACAGTACAAAGCTCTGGCCCACGAATCTTTGCTAGTGTCAGATGGCAGCAGCAGTCATaGCGATCTTGCCTACCCGAG +
Preference number: 4 (lower is better)
Translates to: RSHSTVQSSGPRIFASVRWQQQS*RSCLPE
Trigger: CTCGGGTAGGCAAGATCGTCATGACTGCTGCTGCCA...TCTGACACTAGCAAAGATTCGTGGGCCAGAGCTTTGTACTGTGCTGTGGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp CCCAAACTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAAGCGGCCCAGGCTCTaGAGTTGTTCAGCCCTGAAC +
Preference number: 4 (lower is better)
Translates to: PKLIEGASLSKQKVGRLLKRPRL*SCSALN
Trigger: GTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTT...CAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAGTTTGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR GCA 90 bp ACGGGGACTATAGGGCGGGTAACGGAGGCCATTAAGCTTCTCCATCCCAGGGCACGTCATGAAGCTGTTTaGTATTGTCCTGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: TGTIGRVTEAIKLLHPRARHEAV*YCPAGS
Trigger: GCTTCCTGCAGGACAATAGCAAACAGCTTCATGACG...TGCCCTGGGATGGAGAAGCTTAATGGCCTCCGTTACCCGCCCTATAGTCCCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CAA 72 bp ATCAGGTGGGTCCCAAAGATGACTTCCCACCCTCAGTaGCAAAGCTACACTGTGTGTGGGCTACAGGCTGTG +
Preference number: 4 (lower is better)
Translates to: IRWVPKMTSHPQ*QSYTVCGLQAV
Trigger: CACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCATCTTTGGGACCCACCTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CAA 72 bp TTCCGGATGAAAGCTGTGCTCAGCTTGGTGAGCAAGTaGGTGGACACAGGCTCATCCTTCATCCAGGTCTGC +
Preference number: 4 (lower is better)
Translates to: FRMKAVLSLVSK*VDTGSSFIQVC
Trigger: GCAGACCTGGATGAAGGATGAGCCTGTGTCCACCAACTTGCTCACCAAGCTGAGCACAGCTTTCATCCGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp TACAGAAGGGTGCAGCTCTCAGAGCCGATAGCCCATCTTAGCAGCTGCTGCCTAACAGGGTCATGTACATaGAGCCATCGTTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: YRRVQLSEPIAHLSSCCLTGSCT*SHRSHR
Trigger: TCTGTGGGAACGATGGCTTCATGTACATGACCCTGT...TAGGCAGCAGCTGCTAAGATGGGCTATCGGCTCTGAGAGCTGCACCCTTCTGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025794.7
CDS-3UTR TCA 90 bp ATGACTTCCCACCCTCAGTTGCAAAGCTACACTGTGTGTGGGCTACAGGCTGTGTTGTCTTCCCTGTGTTaGAGGCCTCCTTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: MTSHPQLQSYTVCGLQAVLSSLC*RPPSAS
Trigger: AGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAA...CACAGCCTGTAGCCCACACACAGTGTAGCTTTGCAACTGAGGGTGGGAAGTCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp ACCACTGGGGACTTGGAAGCAGATGAAAGCTTAAATAGGTTGGGGCAGGGCAGCTTGTCTTCCCTGTGTTaGAGGCCTCCTTCAGCCTCT +
Preference number: 4 (lower is better)
Translates to: TTGDLEADESLNRLGQGSLSSLC*RPPSAS
Trigger: AGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAA...GCTGCCCTGCCCCAACCTATTTAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp GAGGAGCCACCTGCCTCTTCCAGCTCCGGGTGTCTGGTTTGTAGTCTCACCTCTCCCCCACTAAAGGTATaGTCATCAAGTTCACAGGAT +
Preference number: 4 (lower is better)
Translates to: EEPPASSSSGCLVCSLTSPPLKV*SSSSQD
Trigger: ATCCTGTGAACTTGATGATCATACCTTTAGTGGGGG...AGAGGTGAGACTACAAACCAGACACCCGGAGCTGGAAGAGGCAGGTGGCTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACCACTCTGGCCACCGATaGCCACACGGCCACAGCCCA +
Preference number: 4 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNHSGHR*PHGHSP
Trigger: TGGGCTGTGGCCGTGTGGCCATCGGTGGCCAGAGTG...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp GGGGACTTGGAAGCAGATGAAAGCTTAAATAGGTTGGGGCAGGGCAGCAGGAGAAGCGGCTTTTCCCGCTaGTTCATGAACTCGATGGCT +
Preference number: 4 (lower is better)
Translates to: GDLEADESLNRLGQGSRRSGFSR*FMNSMA
Trigger: AGCCATCGAGTTCATGAACCAGCGGGAAAAGCCGCT...TCTCCTGCTGCCCTGCCCCAACCTATTTAAGCTTTCATCTGCTTCCAAGTCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp CTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGTGAGCAGACAGGCACGCTaGTTGGAGAAGGTGTCAAAG +
Preference number: 4 (lower is better)
Translates to: LIEGASLSKQKVGRLLRVSRQAR*LEKVSK
Trigger: CTTTGACACCTTCTCCAACCAGCGTGCCTGTCTGCT...CACCCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR GCA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCAAGCGGCCCAGGCTCTaGAGTTGTTCAGCCCTGAAC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCKRPRL*SCSALN
Trigger: GTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTT...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR CCA 90 bp CCCAAACTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGGACAGGCACGCTGGTTaGAGAAGGTGTCAAAGGAGA +
Preference number: 4 (lower is better)
Translates to: PKLIEGASLSKQKVGRLLDRHAG*RRCQRR
Trigger: TCTCCTTTGACACCTTCTCCAACCAGCGTGCCTGTC...CAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAGTTTGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
3UTR CAA 72 bp GTGAGGAGATGCCTACCACCAAAAGCTAGAACTCAGTaGAGGACTCAGACTTTAGGTCCAGAAAGGTGCCTC +
Preference number: 4 (lower is better)
Translates to: VRRCLPPKARTQ*RTQTLGPERCL
Trigger: GAGGCACCTTTCTGGACCTAAAGTCTGAGTCCTCAACTGAGTTCTAGCTTTTGGTGGTAGGCATCTCCTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR GCA 90 bp CCCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAATGTTTGCTATTGTCCTaGAGGAAGCGGCCCAGGCTC +
Preference number: 4 (lower is better)
Translates to: PISPFSFLLASHTLDKIQCLLLS*RKRPRL
Trigger: GAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACA...TTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR TCA 90 bp CCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACACAGGGTCATGTACATaGAGCCATCGTTCCCACAGA +
Preference number: 4 (lower is better)
Translates to: PYHLSPFSWPHTHLTKYNTGSCT*SHRSHR
Trigger: TCTGTGGGAACGATGGCTTCATGTACATGACCCTGT...GTTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CCA 90 bp ACAGCAGAGCTGTGTTCTCTCATAACACTGAAGACACAAATCCATAACCAAGCTACAGCAAAGCAGCTCTaGTCCAGATACTGGGGTAGC +
Preference number: 4 (lower is better)
Translates to: TAELCSLITLKTQIHNQATAKQL*SRYWGS
Trigger: GCTACCCCAGTATCTGGACCAGAGCTGCTTTGCTGT...AGCTTGGTTATGGATTTGTGTCTTCAGTGTTATGAGAGAACACAGCTCTGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
3UTR CAA 72 bp TGGGACAATAGAGGGTTTGAGTCCTGGGACAGCTATTaGGAATTGAGGAGTCACAGACCAAGAAACACAGTG +
Preference number: 4 (lower is better)
Translates to: WDNRGFESWDSY*ELRSHRPRNTV
Trigger: CACTGTGTTTCTTGGTCTGTGACTCCTCAATTCCAAATAGCTGTCCCAGGACTCAAACCCTCTATTGTCCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR GCA 90 bp CCCATATCACCTTTCTCCTTTCTCCTGGCCTCACACACACTTGACAAAATACAACGTCATGAAGCTGTTTaGTATTGTCCTGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: PISPFSFLLASHTLDKIQRHEAV*YCPAGS
Trigger: GCTTCCTGCAGGACAATAGCAAACAGCTTCATGACG...TTGTATTTTGTCAAGTGTGTGTGAGGCCAGGAGAAAGGAGAAAGGTGATATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CAA 72 bp AATAGAGGGTTTGAGTCCTGGGACAGCTATTTGGAATaGAGGAGTCACAGACCAAGAAACACAGTGAGGAGA +
Preference number: 4 (lower is better)
Translates to: NRGFESWDSYLE*RSHRPRNTVRR
Trigger: TCTCCTCACTGTGTTTCTTGGTCTGTGACTCCTCAATTCCAAATAGCTGTCCCAGGACTCAAACCCTCTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
3UTR CAA 72 bp TCCTCTGACCATGAGCTGCAAGAGAATCCTTCCCTCTaGAACTTGTCCGTATCAGGACATTTAATAGAAGTC +
Preference number: 4 (lower is better)
Translates to: SSDHELQENPSL*NLSVSGHLIEV
Trigger: GACTTCTATTAAATGTCCTGATACGGACAAGTTCAAGAGGGAAGGATTCTCTTGCAGCTCATGGTCAGAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
3UTR CAA 72 bp GTGACTGAAGTGAGCATTGAATGGATTGCCAGGATCTaGGCAAGATCCTTAACTTCATCAGATGTTGAAGCT +
Preference number: 4 (lower is better)
Translates to: VTEVSIEWIARI*ARSLTSSDVEA
Trigger: AGCTTCAACATCTGATGAAGTTAAGGATCTTGCCAAGATCCTGGCAATCCATTCAATGCTCACTTCAGTCAC
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS TCA 90 bp TCTGACTCGAAGCCTGACTTGCCCAGGTCTCCATCCAGGGCGTCATaGAGCTGTTTGCTATTGTCCTGCAGGAAGCGGCCCAGGCTCTGC +
Preference number: 5 (lower is better)
Translates to: SDSKPDLPRSPSRAS*SCLLLSCRKRPRLC
Trigger: GCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAGTCAGGCTTCGAGTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS GCA 90 bp AGCCTGACTTGCCCAGGTCTCCATCCAGGGCGTCATGAAGCTGTTTaGTATTGTCCTGCAGGAAGCGGCCCAGGCTCTGCAGTTGTTCAG +
Preference number: 5 (lower is better)
Translates to: SLTCPGLHPGRHEAV*YCPAGSGPGSAVVQ
Trigger: CTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAGTCAGGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS GCA 90 bp TCGAAGCCTTGCCCAGGTCTCCATCCAGGGCGTCATGAAGCTGTTTaGTATTGTCCTGCAGGAAGCGGCCCAGGCTCTGCAGTTGTTCAG +
Preference number: 5 (lower is better)
Translates to: SKPCPGLHPGRHEAV*YCPAGSGPGSAVVQ
Trigger: CTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAGGCTTCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189124.2
CDS-3UTR CAA 90 bp CTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGCTGAGGGTGCAGGTCTGCAGGTTCTaGAGGGCCAGGTCCACCTCA +
Preference number: 5 (lower is better)
Translates to: LIEGASLSKQKVGRLLRVQVCRF*RARSTS
Trigger: TGAGGTGGACCTGGCCCTCAAGAACCTGCAGACCTG...CACCCTCAGCAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CAA 90 bp AGAAAACTAAACCAGAGAGGACCCCACACAGTCATGACCCTGAGAGCAATGGGCGCCCAGGCTCTGCAGTaGTTCAGCCCTGAACTTAGC +
Preference number: 5 (lower is better)
Translates to: RKLNQRGPHTVMTLRAMGAQALQ*FSPELS
Trigger: GCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGC...GCCCATTGCTCTCAGGGTCATGACTGTGTGGGGTCCTCTCTGGTTTAGTTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR CAA 90 bp CTAGGCACTCGCCTTTCAGGAACCACTGGGGACTTGGAAGCAGATGAAAGCTTAGCCCAGGCTCTGCAGTaGTTCAGCCCTGAACTTAGC +
Preference number: 5 (lower is better)
Translates to: LGTRLSGTTGDLEADESLAQALQ*FSPELS
Trigger: GCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGC...TAAGCTTTCATCTGCTTCCAAGTCCCCAGTGGTTCCTGAAAGGCGAGTGCCTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS-3UTR CAA 90 bp CTGCCCAAACTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGATGATTCTGCCCAGGTaGGGGGAGGTCTGTGGGTTA +
Preference number: 5 (lower is better)
Translates to: LPKLIEGASLSKQKVGRLMILPR*GEVCGL
Trigger: TAACCCACAGACCTCCCCCAACCTGGGCAGAATCAT...CAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAGTTTGGGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CAA 90 bp TGCGTGTGTGTGTGTGTGTGCACATGTGTGTGGTTTTCTACCATGTATCTGTGCGCAGTCATGACGATCTaGCCTACCCGAGGACTTCCT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCTCVWFSTMYLCAVMTI*PTRGLP
Trigger: AGGAAGTCCTCGGGTAGGCAAGATCGTCATGACTGC...GCACAGATACATGGTAGAAAACCACACACATGTGCACACACACACACACACGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS-3UTR CAA 90 bp CTGCCCAAACTTATTGAGGGGGCTTCTCTGTCTAAGCAGAAGGTTGGAAGGCTGACCTTCTCTGTGTTCTaGCTAATTTCTGATGGCTTC +
Preference number: 5 (lower is better)
Translates to: LPKLIEGASLSKQKVGRLTFSVF*LISDGF
Trigger: GAAGCCATCAGAAATTAGCAAGAACACAGAGAAGGT...CAGCCTTCCAACCTTCTGCTTAGACAGAGAAGCCCCCTCAATAAGTTTGGGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS CAA 90 bp TCGTTCCCACAGAAGCCCCCGCTGCTGGTCCGGGCCAACACCTGTTaGATGACCAATGTAGCGCTCTCCCTCATCACTCTGGCCACCGAT +
Preference number: 6 (lower is better)
Translates to: SFPQKPPLLVRANTC*MTNVALSLITLATD
Trigger: ATCGGTGGCCAGAGTGATGAGGGAGAGCGCTACATTGGTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTGTGGGAACGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025794.7
CDS CAA 72 bp CAGAAGCCCCCGCTGCTGGTCCGGGCCAACACCTGTTaGATGACCAATGTAGCGCTCTCCCTCATCACTCTG +
Preference number: 6 (lower is better)
Translates to: QKPPLLVRANTC*MTNVALSLITL
Trigger: CAGAGTGATGAGGGAGAGCGCTACATTGGTCATCAAACAGGTGTTGGCCCGGACCAGCAGCGGGGGCTTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025794.7
CDS TCA 72 bp AAGCCTGACTTGCCCAGGTCTCCATCCAGGGCGTCATaGAGCTGTTTGCTATTGTCCTGCAGGAAGCGGCCC +
Preference number: 6 (lower is better)
Translates to: KPDLPRSPSRAS*SCLLLSCRKRP
Trigger: GGGCCGCTTCCTGCAGGACAATAGCAAACAGCTTCATGACGCCCTGGATGGAGACCTGGGCAAGTCAGGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179433.8
CDS CAA 72 bp GCTATTGTCCTGCAGGAAGCGGCCCAGGCTCTGCAGTaGTTCAGCCCTGAACTTAGCCGTCTTTGTCTTCCC +
Preference number: 6 (lower is better)
Translates to: AIVLQEAAQALQ*FSPELSRLCLP
Trigger: GGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS GCA 72 bp TGTTTGCTATTGTCCTGCAGGAAGCGGCCCAGGCTCTaGAGTTGTTCAGCCCTGAACTTAGCCGTCTTTGTC +
Preference number: 6 (lower is better)
Translates to: CLLLSCRKRPRL*SCSALNLAVFV
Trigger: GACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS CAA 90 bp AAGCTGTTTGCTATTGTCCTGCAGGAAGCGGCCCAGGCTCTGCAGTaGTTCAGCCCTGAACTTAGCCGTCTTTGTCTTCCCTGTGTTGAA +
Preference number: 6 (lower is better)
Translates to: KLFAIVLQEAAQALQ*FSPELSRLCLPCVE
Trigger: TTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGAACAACTGCAGAGCCTGGGCCGCTTCCTGCAGGACAATAGCAAACAGCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2
CDS CAA 72 bp TCAGCCCTGAACTTAGCCGTCTTTGTCTTCCCTGTGTaGAAGGCCTCCTTCAGCCTCTGTAGCTTTTCTTCA +
Preference number: 6 (lower is better)
Translates to: SALNLAVFVFPV*KASFSLCSFSS
Trigger: TGAAGAAAAGCTACAGAGGCTGAAGGAGGCCTTCAACACAGGGAAGACAAAGACGGCTAAGTTCAGGGCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000179433.8
ENSMUST00000189124.2