RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH1L2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020256

Ensembl transcript IDs: ENSMUST00000020497.14, ENSMUST00000146640.8

Found 277 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGGTGTGCGCCAGGGCTTTGTGTACCTGTCATCCTCAGAGGAGACTaGCTGGTTCTCACTGAGCCTTTCCTTTATTGGCCAATGTATGCG +
Preference number: 1 (lower is better)
Translates to: GCAPGLCVPVILRGD*LVLTEPFLYWPMYA
Trigger: CGCATACATTGGCCAATAAAGGAAAGGCTCAGTGAGAACCAGCCAGTCTCCTCTGAGGATGACAGGTACACAAAGCCCTGGCGCACACCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 90 bp GTGCGCCAGGGCTTTGTGTACCTGTCATCCTCAGAGGAGACTGGCTaGTTCTCACTGAGCCTTTCCTTTATTGGCCAATGTATGCGTGTA +
Preference number: 1 (lower is better)
Translates to: VRQGFVYLSSSEETG*FSLSLSFIGQCMRV
Trigger: TACACGCATACATTGGCCAATAAAGGAAAGGCTCAGTGAGAACCAGCCAGTCTCCTCTGAGGATGACAGGTACACAAAGCCCTGGCGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 90 bp ATGTCAGTGGTGATAATCAAACTTGAGTCACAGTGGGAAACCTTGTaGGCACCGCACAGGATCAGTGGCCATCCTGAAGAGGCACGATGC +
Preference number: 1 (lower is better)
Translates to: MSVVIIKLESQWETL*APHRISGHPEEARC
Trigger: GCATCGTGCCTCTTCAGGATGGCCACTGATCCTGTGCGGTGCTCACAAGGTTTCCCACTGTGACTCAAGTTTGATTATCACCACTGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 90 bp AGTCACAGAGCTTACCATCATCTTCCATGTAACAAATGGAGACTTTaGAGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTG +
Preference number: 1 (lower is better)
Translates to: SHRAYHHLPCNKWRL*RQEVTDSPDHTQPV
Trigger: CACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCTCCAAAGTCTCCATTTGTTACATGGAAGATGATGGTAAGCTCTGTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 90 bp GTACATTGCTGTGTATCTGCTGCTCTGTGTGAGGCCCTCAGTGCCTaGCACATGGCCTTACTTGGGATGGAATATATAGCGTCAATAAAC +
Preference number: 1 (lower is better)
Translates to: VHCCVSAALCEALSA*HMALLGMEYIASIN
Trigger: GTTTATTGACGCTATATATTCCATCCCAAGTAAGGCCATGTGCCAGGCACTGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 90 bp CACCAAGTAAGTCACAGAGCTTACCATCATCTTCCATGTAACAAATaGAGACTTTGGAGACAGGAGGTCACTGACTCCCCTGACCACACA +
Preference number: 1 (lower is better)
Translates to: HQVSHRAYHHLPCNK*RLWRQEVTDSPDHT
Trigger: TGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCTCCAAAGTCTCCATTTGTTACATGGAAGATGATGGTAAGCTCTGTGACTTACTTGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 90 bp TTGCTGCACATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTaGATGTCAGTGGTGATAATCAAACTTGAGTCACAGTGGGAAACC +
Preference number: 1 (lower is better)
Translates to: LLHISSVLRNSPLSG*MSVVIIKLESQWET
Trigger: GGTTTCCCACTGTGACTCAAGTTTGATTATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 90 bp AGCTCAGACAAGTTGGGTAGTTTTCCCCCAACTCACACAGTAAGCTaGTATAATATGACCACGACTGACCATCACAGGCACTTTACTAGG +
Preference number: 1 (lower is better)
Translates to: SSDKLGSFPPTHTVS*YNMTTTDHHRHFTR
Trigger: CCTAGTAAAGTGCCTGTGATGGTCAGTCGTGGTCATATTATACCAGCTTACTGTGTGAGTTGGGGGAAAACTACCCAACTTGTCTGAGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CCA 90 bp AGACACAGAGAGACTGAGCACACAAGAAAGAGCAAAGCATCACTGTaGCCCTCCACACATTACTTTGACTCATGTACTATGGCAGAGTAC +
Preference number: 1 (lower is better)
Translates to: RHRETEHTRKSKASL*PSTHYFDSCTMAEY
Trigger: GTACTCTGCCATAGTACATGAGTCAAAGTAATGTGTGGAGGGCCACAGTGATGCTTTGCTCTTTCTTGTGTGCTCAGTCTCTCTGTGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 90 bp TTTGGGGACTATCTCCCTAGTCATCACAAGAAATTAATGGATTGCTaGACATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCA +
Preference number: 1 (lower is better)
Translates to: FGDYLPSHHKKLMDC*TSVLCSGIPLCLVA
Trigger: TGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAATCCATTAATTTCTTGTGATGACTAGGGAGATAGTCCCCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 90 bp CTTCCTTCTCATAGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTaGAGGATAAACTGGTGTTTGAATGCACAGCTAAGAAAGGGTTGT +
Preference number: 1 (lower is better)
Translates to: LPSHRRKEEDRCHIL*RINWCLNAQLRKGC
Trigger: ACAACCCTTTCTTAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCTATGAGAAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR TCA 90 bp CTGTGTTATGCACTGTGTAAGAAGAATGGGCAGGGAAGAGTAATCTaGGCCTTGATTATTGAGAAGTATAGGAAGTTCATTTCATCCATC +
Preference number: 1 (lower is better)
Translates to: LCYALCKKNGQGRVI*ALIIEKYRKFISSI
Trigger: GATGGATGAAATGAACTTCCTATACTTCTCAATAATCAAGGCTCAGATTACTCTTCCCTGCCCATTCTTCTTACACAGTGCATAACACAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR TCA 90 bp AAAGTTCTTGGGCTTAAGTATCAGTTGATTCCTGATCCGTGGTTCTaGAGAAAACAGAATGTGTTTCTAGCAAATTCTAACCTGTGGACT +
Preference number: 1 (lower is better)
Translates to: KVLGLKYQLIPDPWF*RKQNVFLANSNLWT
Trigger: AGTCCACAGGTTAGAATTTGCTAGAAACACATTCTGTTTTCTTCAGAACCACGGATCAGGAATCAACTGATACTTAAGCCCAAGAACTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCTGCCCTGCCCTGGCCTaGGTCTGGGGTTGCAGGCAT +
Preference number: 2 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRACPALA*VWGCRH
Trigger: ATGCCTGCAACCCCAGACTCAGGCCAGGGCAGGGCA...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR GCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCATAAGGACCCTGCCCTaGCCTGGCCTGAGTCTGGGG +
Preference number: 2 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRAIRTLP*PGLSLG
Trigger: CCCCAGACTCAGGCCAGGGCAGGGCAGGGTCCTTAT...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGGAAAGGCTCAGAAGCTaGCTGTCTGTCACAGTGGGT +
Preference number: 2 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLERLRS*LSVTVG
Trigger: ACCCACTGTGACAGACAGGCAGCTTCTGAGCCTTTC...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR CCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCTCACTGCACGGCAGTTaGCAGCATCCTGCTGTGTTA +
Preference number: 2 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRASLHGS*QHPAVL
Trigger: TAACACAGCAGGATGCTGCCAACTGCCGTGCAGTGA...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp GCTTGTGTATTGCAGTACATTGCTGTGTATCTGCTGCTCTGTGTGAGGCCCTCAGACCCTGCCCTGCCCTaGCCTGAGTCTGGGGTTGCA +
Preference number: 2 (lower is better)
Translates to: ACVLQYIAVYLLLCVRPSDPALP*PESGVA
Trigger: TGCAACCCCAGACTCAGGCCAGGGCAGGGCAGGGTC...TGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATACACAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCAGAGCTCAGACAAGTTaGGTAGTTTTCCCCCAACTC +
Preference number: 2 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRARAQTS*VVFPQL
Trigger: GAGTTGGGGGAAAACTACCCAACTTGTCTGAGCTCT...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCAGGGTCTTCAGCTCCTaGAGCATTGAAGTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGARVFSS*SIEVGC
Trigger: ACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCT...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCTCTGCAGGATAAACTaGTGTTTGAATGCACAGCTA +
Preference number: 2 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLLCRIN*CLNAQL
Trigger: TAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGAAACTGGTGTTTGAATaGACAGCTAAGAAAGGGTTG +
Preference number: 2 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLKLVFE*TAKKGL
Trigger: CAACCCTTTCTTAGCTGTGCATTCAAACACCAGTTT...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTAGGGTCTTCAGCTCCTaGAGCATTGAAGTGGGCTGT +
Preference number: 2 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLRVFSS*SIEVGC
Trigger: ACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp CCAGCAGATACAGTCGTGAGAAGCAACATGTCCTGGAGACAGCAAAGTAAGCATGAAGGTCTCTTAGTGTaGCCCAGGCTGGCATCACAC +
Preference number: 2 (lower is better)
Translates to: PADTVVRSNMSWRQQSKHEGLLV*PRLASH
Trigger: GTGTGATGCCAGCCTGGGTCACACTAAGAGACCTTC...ATGCTTACTTTGCTGTCTCCAGGACATGTTGCTTCTCACGACTGTATCTGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR GCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCTGGCATCACACTTTCTaGATAGCCTGGTTGACCTCA +
Preference number: 2 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAWHHTF*IAWLTS
Trigger: TGAGGTCAACCAGGCTATGCAGAAAGTGTGATGCCA...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATACAGTGGGAAACCTTGTaGGCACCGCACAGGATCAGT +
Preference number: 2 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVIQWETL*APHRIS
Trigger: ACTGATCCTGTGCGGTGCTCACAAGGTTTCCCACTG...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CAA 90 bp CTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAAGTaGGGTAGTTTTCCCCCAACTCACACAGTAAGCTGGTATAATATG +
Preference number: 2 (lower is better)
Translates to: LLLLFNTGGGQSSDK*GSFPPTHTVSWYNM
Trigger: CATATTATACCAGCTTACTGTGTGAGTTGGGGGAAAACTACCCAACTTGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTCAGCTCCTGAAGCATTaGAGTGGGCTGTCTATCAAA +
Preference number: 2 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLQLLKH*SGLSIK
Trigger: TTTGATAGACAGCCCACTTCAATGCTTCAGGAGCTG...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp ATCTCAAGTCAGTGTAAAATGAGTCAAGATGTCAGGACAGGCTACTTCTACAAAATCTGCTGCTCTGTGTaGGGCCCTCAGTGCCTGGCA +
Preference number: 2 (lower is better)
Translates to: ISSQCKMSQDVRTGYFYKICCSV*GPQCLA
Trigger: TGCCAGGCACTGAGGGCCTCACACAGAGCAGCAGAT...TTTGTAGAAGTAGCCTGTCCTGACATCTTGACTCATTTTACACTGACTTGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CAA 90 bp AAAGATGACGCCAATAAGAGGGTCTCCTCCGAACTTTACAGTACTTaGTCCCAAGTATGTAAATGTGGAAGAAAGGCTCAGAAGCTGCCT +
Preference number: 2 (lower is better)
Translates to: KDDANKRVSSELYST*SQVCKCGRKAQKLP
Trigger: AGGCAGCTTCTGAGCCTTTCTTCCACATTTACATACTTGGGACAAAGTACTGTAAAGTTCGGAGGAGACCCTCTTATTGGCGTCATCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGTGTACTGGAATTTCTTaGGGCCCTCAGTCAGGTAAA +
Preference number: 2 (lower is better)
Translates to: RRKEEDRCHILCRINWCLCTGIS*GPQSGK
Trigger: TTTACCTGACTGAGGGCCTCAAGAAATTCCAGTACA...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCCATGAGTACTGCCTCTaGCACTCTCTAGACCCCATT +
Preference number: 2 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGHEYCL*HSLDPI
Trigger: AATGGGGTCTAGAGAGTGTCAGAGGCAGTACTCATG...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCTCTGCAGGATAAACTaGTGTTTGAATGCACAGCTA +
Preference number: 2 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKLCRIN*CLNAQL
Trigger: TAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR CCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATACTTCCATGTAACAAATaGAGACTTTGGAGACAGGAG +
Preference number: 2 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVILPCNK*RLWRQE
Trigger: CTCCTGTCTCCAAAGTCTCCATTTGTTACATGGAAG...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCCAGCTCCTGAAGCATTaGAGTGGGCTGTCTATCAAA +
Preference number: 2 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGQLLKH*SGLSIK
Trigger: TTTGATAGACAGCCCACTTCAATGCTTCAGGAGCTG...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp TTCCGATGCTCACAACATGCAAACCCTTATCAAATTGTAAACTTCATATTTGTGCATCCAAGGACAAGGTaGCCCTTTTCCTGGTGCCAC +
Preference number: 2 (lower is better)
Translates to: FRCSQHANPYQIVNFIFVHPRTR*PFSWCH
Trigger: GTGGCACCAGGAAAAGGGTCACCTTGTCCTTGGATG...CACAAATATGAAGTTTACAATTTGATAAGGGTTTGCATGTTGTGAGCATCGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CAA 90 bp ACACAAGAAAGAGCAAAGCATCACTGTGGCCCTCCACACATTACTTaGACTCATGTACTATGGCAGAGTACATTTCCATGTTGTTGGATA +
Preference number: 2 (lower is better)
Translates to: TQERAKHHCGPPHIT*THVLWQSTFPCCWI
Trigger: TATCCAACAACATGGAAATGTACTCTGCCATAGTACATGAGTCAAAGTAATGTGTGGAGGGCCACAGTGATGCTTTGCTCTTTCTTGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAACCTGGGAGGGAGCTTTaGTACTTTAGAAAAACATAC +
Preference number: 2 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFEPGREL*YFRKTY
Trigger: GTATGTTTTTCTAAAGTATCAAAGCTCCCTCCCAGG...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGGCTTAAGTATCAGTTaGTTCCTGATCCGTGGTTCT +
Preference number: 2 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFGLSIS*FLIRGS
Trigger: AGAACCACGGATCAGGAATCAACTGATACTTAAGCC...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAAATGCTCATACAAGTaGTCTAACCCTCTTCTTGGT +
Preference number: 2 (lower is better)
Translates to: RRKEEDRCHILCRINWCLKCSYK*SNPLLG
Trigger: ACCAAGAAGAGGGTTAGACCACTTGTATGAGCATTT...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR-3UTR TCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTCCTGGGAGGGAGCTTTaGTACTTTAGAAAAACATAC +
Preference number: 2 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFPGREL*YFRKTY
Trigger: GTATGTTTTTCTAAAGTATCAAAGCTCCCTCCCAGG...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp AAACAGAATGTGTTTCTAGCAAATTCTAACCTGTGGACTTACCACCATTCTTGTGAGACACAGAGAGACTaGGCACACAAGAAAGAGCAA +
Preference number: 2 (lower is better)
Translates to: KQNVFLANSNLWTYHHSCETQRD*AHKKEQ
Trigger: TTGCTCTTTCTTGTGTGCTCAGTCTCTCTGTGTCTC...ACAAGAATGGTGGTAAGTCCACAGGTTAGAATTTGCTAGAAACACATTCTGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTCTCCACACATTACTTTaGCTCATGTACTATGGCAGA +
Preference number: 2 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSLHTLL*LMYYGR
Trigger: TCTGCCATAGTACATGAGTCAAAGTAATGTGTGGAG...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR TCA 90 bp ATCTCAAGTCAGTGTAAAATGAGTCAAGATGTCAGGACAGGCTACTTCTACAAACCTGATCCGTGGTTCTaGAGAAAACAGAATGTGTTT +
Preference number: 2 (lower is better)
Translates to: ISSQCKMSQDVRTGYFYKPDPWF*RKQNVF
Trigger: AAACACATTCTGTTTTCTTCAGAACCACGGATCAGG...TTTGTAGAAGTAGCCTGTCCTGACATCTTGACTCATTTTACACTGACTTGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CCA 90 bp ATCTCAAGTCAGTGTAAAATGAGTCAAGATGTCAGGACAGGCTACTTCTACAAAAAATGCTCATACAAGTaGTCTAACCCTCTTCTTGGT +
Preference number: 2 (lower is better)
Translates to: ISSQCKMSQDVRTGYFYKKCSYK*SNPLLG
Trigger: ACCAAGAAGAGGGTTAGACCACTTGTATGAGCATTT...TTTGTAGAAGTAGCCTGTCCTGACATCTTGACTCATTTTACACTGACTTGAGAT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR GCA 90 bp TTCCGATGCTCACAACATGCAAACCCTTATCAAATTGTAAACTTCATATTTGTGAGGTGTCACATTCTCTaGAGGATAAACTGGTGTTTG +
Preference number: 2 (lower is better)
Translates to: FRCSQHANPYQIVNFIFVRCHIL*RINWCL
Trigger: CAAACACCAGTTTATCCTGCAGAGAATGTGACACCT...CACAAATATGAAGTTTACAATTTGATAAGGGTTTGCATGTTGTGAGCATCGGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR GCA 90 bp ATCTCAAGTCAGTGTAAAATGAGTCAAGATGTCAGGACAGGCTACTTCTACAAATTATTGGCCAATGTATaGGTGTACTCATGTATGTAC +
Preference number: 2 (lower is better)
Translates to: ISSQCKMSQDVRTGYFYKLLANV*VYSCMY
Trigger: GTACATACATGAGTACACGCATACATTGGCCAATAA...TTTGTAGAAGTAGCCTGTCCTGACATCTTGACTCATTTTACACTGACTTGAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 72 bp GGCAACCAGCAGATACGGGAGGGGCATTGGTGGGTGTaGGCCAGGGCTTTGTGTACCTGTCATCCTCAGAGG +
Preference number: 3 (lower is better)
Translates to: GNQQIREGHWWV*ARALCTCHPQR
Trigger: CCTCTGAGGATGACAGGTACACAAAGCCCTGGCGCACACCCACCAATGCCCCTCCCGTATCTGCTGGTTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp AACCTTGTGAGCACCGCACAGGATCAGTGGCCATCCTaGAGAGGCACGATGCAGCTCCCTGGGAGCGCATTC +
Preference number: 3 (lower is better)
Translates to: NLVSTAQDQWPS*RGTMQLPGSAF
Trigger: GAATGCGCTCCCAGGGAGCTGCATCGTGCCTCTTCAGGATGGCCACTGATCCTGTGCGGTGCTCACAAGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 72 bp AAATATCAAGGCAACCAGCAGATACGGGAGGGGCATTaGTGGGTGTGCGCCAGGGCTTTGTGTACCTGTCAT +
Preference number: 3 (lower is better)
Translates to: KYQGNQQIREGH*WVCARALCTCH
Trigger: ATGACAGGTACACAAAGCCCTGGCGCACACCCACCAATGCCCCTCCCGTATCTGCTGGTTGCCTTGATATTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp TATTGCAGTACATTGCTGTGTATCTGCTGCTCTGTGTaGGGCCCTCAGTGCCTGGCACATGGCCTTACTTGG +
Preference number: 3 (lower is better)
Translates to: YCSTLLCICCSV*GPQCLAHGLTW
Trigger: CCAAGTAAGGCCATGTGCCAGGCACTGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 72 bp TGTGTATCTGCTGCTCTGTGTGAGGCCCTCAGTGCCTaGCACATGGCCTTACTTGGGATGGAATATATAGCG +
Preference number: 3 (lower is better)
Translates to: CVSAALCEALSA*HMALLGMEYIA
Trigger: CGCTATATATTCCATCCCAAGTAAGGCCATGTGCCAGGCACTGAGGGCCTCACACAGAGCAGCAGATACACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CAA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCAGGATAAACTGGTGTTaGAATGCACAGCTAAGAAAG +
Preference number: 3 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRARINWC*NAQLRK
Trigger: CTTTCTTAGCTGTGCATTCAAACACCAGTTTATCCT...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp GTGATAATCAAACTTGAGTCACAGTGGGAAACCTTGTaGGCACCGCACAGGATCAGTGGCCATCCTGAAGAG +
Preference number: 3 (lower is better)
Translates to: VIIKLESQWETL*APHRISGHPEE
Trigger: CTCTTCAGGATGGCCACTGATCCTGTGCGGTGCTCACAAGGTTTCCCACTGTGACTCAAGTTTGATTATCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 72 bp GGCTTTGTGTACCTGTCATCCTCAGAGGAGACTGGCTaGTTCTCACTGAGCCTTTCCTTTATTGGCCAATGT +
Preference number: 3 (lower is better)
Translates to: GFVYLSSSEETG*FSLSLSFIGQC
Trigger: ACATTGGCCAATAAAGGAAAGGCTCAGTGAGAACCAGCCAGTCTCCTCTGAGGATGACAGGTACACAAAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR-3UTR CAA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTCACTGCACGGCAGTaGGCAGCATCCTGCTGTGTT +
Preference number: 3 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGFTARQ*AASCCV
Trigger: AACACAGCAGGATGCTGCCAACTGCCGTGCAGTGAA...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp TTTGTCTGGTTGCATGTCAGTGGTGATAATCAAACTTaGGTCACAGTGGGAAACCTTGTGAGCACCGCACAG +
Preference number: 3 (lower is better)
Translates to: FVWLHVSGDNQT*VTVGNLVSTAQ
Trigger: CTGTGCGGTGCTCACAAGGTTTCCCACTGTGACTCAAGTTTGATTATCACCACTGACATGCAACCAGACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 72 bp CTGGTGATTATAACCAGCTTGTGTATTGCAGTACATTaGTGTGTATCTGCTGCTCTGTGTGAGGCCCTCAGT +
Preference number: 3 (lower is better)
Translates to: LVIITSLCIAVH*CVSAALCEALS
Trigger: ACTGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATACACAAGCTGGTTATAATCACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 72 bp AGTCACAGAGCTTACCATCATCTTCCATGTAACAAATaGAGACTTTGGAGACAGGAGGTCACTGACTCCCCT +
Preference number: 3 (lower is better)
Translates to: SHRAYHHLPCNK*RLWRQEVTDSP
Trigger: AGGGGAGTCAGTGACCTCCTGTCTCCAAAGTCTCCATTTGTTACATGGAAGATGATGGTAAGCTCTGTGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp TTTGTTTTTCTGGTTTTGATAGAAGGTCTCTTAGTGTaGCCCAGGCTGGCATCACACTTTCTGCATAGCCTG +
Preference number: 3 (lower is better)
Translates to: FVFLVLIEGLLV*PRLASHFLHSL
Trigger: CAGGCTATGCAGAAAGTGTGATGCCAGCCTGGGTCACACTAAGAGACCTTCTATCAAAACCAGAAAAACAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp GAGCAAAGCATCACTGTGGCCCTCCACACATTACTTTaGCTCATGTACTATGGCAGAGTACATTTCCATGTT +
Preference number: 3 (lower is better)
Translates to: EQSITVALHTLL*LMYYGRVHFHV
Trigger: AACATGGAAATGTACTCTGCCATAGTACATGAGTCAAAGTAATGTGTGGAGGGCCACAGTGATGCTTTGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 72 bp CACAAGAAATTAATGGATTGCTGCACATCAGTTCTGTaGTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAG +
Preference number: 3 (lower is better)
Translates to: HKKLMDCCTSVL*SGIPLCLVACQ
Trigger: CTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAATCCATTAATTTCTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CCA 72 bp GAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTaGTGTTTGAATGCACAGCTAAGAAAGGGTTGTCAG +
Preference number: 3 (lower is better)
Translates to: EEDRCHILCRIN*CLNAQLRKGCQ
Trigger: CTGACAACCCTTTCTTAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CCA 72 bp GGAGACTGGCTGGTTCTCACTGAGCCTTTCCTTTATTaGCCAATGTATGCGTGTACTCATGTATGTACTTAT +
Preference number: 3 (lower is better)
Translates to: GDWLVLTEPFLY*PMYACTHVCTY
Trigger: ATAAGTACATACATGAGTACACGCATACATTGGCCAATAAAGGAAAGGCTCAGTGAGAACCAGCCAGTCTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 72 bp GACTATCTCCCTAGTCATCACAAGAAATTAATGGATTaGTGCACATCAGTTCTGTGCTCAGGAATTCCCCTT +
Preference number: 3 (lower is better)
Translates to: DYLPSHHKKLMD*CTSVLCSGIPL
Trigger: AAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAATCCATTAATTTCTTGTGATGACTAGGGAGATAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR GCA 72 bp GTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAATaGACAGCTAAGAAAGGGTTGTCAGTGTTCAGTATA +
Preference number: 3 (lower is better)
Translates to: VSHSLQDKLVFE*TAKKGLSVFSI
Trigger: TATACTGAACACTGACAACCCTTTCTTAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAGAATGTGACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR GCA 72 bp TATCTCCCTAGTCATCACAAGAAATTAATGGATTGCTaGACATCAGTTCTGTGCTCAGGAATTCCCCTTTGT +
Preference number: 3 (lower is better)
Translates to: YLPSHHKKLMDC*TSVLCSGIPLC
Trigger: ACAAAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAATCCATTAATTTCTTGTGATGACTAGGGAGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp GCACTGTGTAAGAAGAATGGGCAGGGAAGAGTAATCTaGGCCTTGATTATTGAGAAGTATAGGAAGTTCATT +
Preference number: 3 (lower is better)
Translates to: ALCKKNGQGRVI*ALIIEKYRKFI
Trigger: AATGAACTTCCTATACTTCTCAATAATCAAGGCTCAGATTACTCTTCCCTGCCCATTCTTCTTACACAGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR TCA 72 bp GGGCTTAAGTATCAGTTGATTCCTGATCCGTGGTTCTaGAGAAAACAGAATGTGTTTCTAGCAAATTCTAAC +
Preference number: 3 (lower is better)
Translates to: GLKYQLIPDPWF*RKQNVFLANSN
Trigger: GTTAGAATTTGCTAGAAACACATTCTGTTTTCTTCAGAACCACGGATCAGGAATCAACTGATACTTAAGCCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR TCA 72 bp TACTCATGTATGTACTTATGTATGTATGTAACCTGTTaGGTTCAATTAGTGCTTCCGATGCTCACAACATGC +
Preference number: 3 (lower is better)
Translates to: YSCMYLCMYVTC*VQLVLPMLTTC
Trigger: GCATGTTGTGAGCATCGGAAGCACTAATTGAACTCAACAGGTTACATACATACATAAGTACATACATGAGTA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACACGGATGTCAGGGTGCTaGGAGAGCCTCTGTCCTGCG +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTRMSGC*ESLCPA
Trigger: CGCAGGACAGAGGCTCTCTCAGCACCCTGACATCCG...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGTGTTGCCCCCTCTTCTaGCTGGGGAGTGCGAGGCGC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQCCPLF*LGSARR
Trigger: GCGCCTCGCACTCCCCAGCCAGAAGAGGGGGCAACA...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGATCTGTTTGCCCACTaGGGTGGATCCAGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLDLFAH*GGSSEA
Trigger: GGCTTCACTGGATCCACCTCAGTGGGCAAACAGATC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAAGTGTGGCCCCCTCCTaGACCCCAGTCTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTSVAPS*TPVSQY
Trigger: GTACTGTGAGACTGGGGTGCAGGAGGGGGCCACACT...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGGCACAGGCACCAAGTaGCTCCTTCTTGGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLGTGTK*LLLGEG
Trigger: ACCTTCACCAAGAAGGAGCCACTTGGTGCCTGTGCC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CAA 72 bp ATACGGGAGGGGCATTGGTGGGTGTGCGCCAGGGCTTaGTGTACCTGTCATCCTCAGAGGAGACTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: IREGHWWVCARA*CTCHPQRRLAG
Trigger: ACCAGCCAGTCTCCTCTGAGGATGACAGGTACACAAAGCCCTGGCGCACACCCACCAATGCCCCTCCCGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGCCAGGGACCTTGTCATaGCCTCGAATCCAGTTATGC +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLPGTLS*PRIQLC
Trigger: GCATAACTGGATTCGAGGTCATGACAAGGTCCCTGG...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCTCCGCAACTCTGTCTaGTCTCTTCCACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLLRNSV*SLPPAS
Trigger: TGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGAG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGTCCTGCGACACCCCCTaGGCCTGGAATGATGTTAAT +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLSCDTP*AWNDVN
Trigger: ATTAACATCATTCCAGGCTCAGGGGGTGTCGCAGGA...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGACACAGTGGGTTCCATaGAGAAGCCTGGCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLTQWVP*RSLASA
Trigger: TGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGT...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGGATGCCTTCATATGTTaGCCCCTCTTCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLDAFIC*PLFWLG
Trigger: CCCCAGCCAGAAGAGGGGGCAACATATGAAGGCATC...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCCTCCATACACCAGTGTaGCCCCCTCCTGCACCCCAG +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVLHTPV*PPPAPQ
Trigger: CTGGGGTGCAGGAGGGGGCCACACTGGTGTATGGAG...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGGTGAGGGGTGGTAGATaGTGGAGCCATGCTTTGGGC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQVRGGR*WSHALG
Trigger: GCCCAAAGCATGGCTCCATCATCTACCACCCCTCAC...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCCCAGGGACCTTGTCATaGCCTCGAATCCAGTTATGC +
Preference number: 4 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRAPGTLS*PRIQLC
Trigger: GCATAACTGGATTCGAGGTCATGACAAGGTCCCTGG...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGTGGCTCCTTCTTGGTaGAGGTCAGGTTGTAATTCG +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLVAPSW*RSGCNS
Trigger: CGAATTACAACCTGACCTTCACCAAGAAGGAGCCAC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAACACAGTGGGTTCCATaGAGAAGCCTGGCCTCTGCA +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTTQWVP*RSLASA
Trigger: TGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGT...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGATCCACCACCATCTCTaGCTCTTCGTCCTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLIHHHL*LFVLSS
Trigger: AGAGGAGAGGACGAAGAGGCAGAGATGGTGGTGGAT...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCTTCTACCATGGCCTTaGTCCCCTCAGGAAAAAGGA +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLLLPWP*SPQEKG
Trigger: TCCTTTTTCCTGAGGGGATCAAGGCCATGGTAGAAG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGTCACCATCTGTCCATTaGTCTCTGCCCAGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQSPSVH*SLPRLQ
Trigger: CTGGAGCCTGGGCAGAGATCAATGGACAGATGGTGA...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGACAGACATTCCAATGTaGGTCTTCAGAGCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLTDIPM*VFRARV
Trigger: CACCCTGGCTCTGAAGACTCACATTGGAATGTCTGT...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACATCCTGCGACACCCCCTaGGCCTGGAATGATGTTAAT +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTSCDTP*AWNDVN
Trigger: ATTAACATCATTCCAGGCTCAGGGGGTGTCGCAGGA...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCTTGGCAAGGTACATGTaGTCTTCCACGCCTGTGAAC +
Preference number: 4 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRALARYM*SSTPVN
Trigger: GTTCACAGGCGTGGAAGATCACATGTACCTTGCCAA...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCCTCGAATCCAGTTATaGAAACCTTCAGCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLPRIQL*KPSAGW
Trigger: CCAGCCTGCTGAAGGTTTGCATAACTGGATTCGAGG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGTTTCACGGTCAGCTCTaGAAACTTCAGAGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLFHGQL*KLQSRQ
Trigger: TTGACGGCTCTGAAGTTTGCAGAGCTGACCGTGAAA...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCCAGTCTCACAGTACTaGAGCAGCTTTTCCAAGTGC +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLPVSQY*SSFSKC
Trigger: GCACTTGGAAAAGCTGCTGCAGTACTGTGAGACTGG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGCGTTCTCCTTCTTCTaGATGCCTTCATATGTTGCC +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLAFSFF*MPSYVA
Trigger: GGCAACATATGAAGGCATCCAGAAGAAGGAGAACGC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGTCTCTTCCACCACTCTaGTTACGAATTCGTCGTGGA +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLSLPPL*LRIRRG
Trigger: TCCACGACGAATTCGTAACCAGAGTGGTGGAAGAGA...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCCTTCATTCCACCAAATaGGGCTGCCACGTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRALHSTK*GCHVCL
Trigger: AAGACAGACGTGGCAGCCCCATTTGGTGGAATGAAG...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGCACAACCTTTTGGATaGAATCTCCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLAQPFG*NLQTWW
Trigger: CCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCGACCTTAATGGTCTCTaGCACCTTCAGCTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVDLNGL*HLQLLG
Trigger: GCCGAGGAGCTGAAGGTGGCAGAGACCATTAAGGTC...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCTTTGTCACACCAGCCTaGGAAGTATCTGAACGTCTG +
Preference number: 4 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRAFVTPA*EVSERL
Trigger: CAGACGTTCAGATACTTCGCAGGCTGGTGTGACAAA...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGTTATCAGTGGGGATTTaGCACCAAGCTCAAGGGAAA +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLLSVGI*HQAQGK
Trigger: TTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAA...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCAATAAACCCGGCTGGTaGAGAAGTGCCGTAGCGCCT +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVNKPGW*RSAVAP
Trigger: AGGCGCTACGGCACTTCTCCACCAGCCGGGTTTATT...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCCATCAGCTATGAGTTaGACGGCTTCTACCATGGCC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQPSAMS*TASTMA
Trigger: GGCCATGGTAGAAGCCGTCCAACTCATAGCTGATGG...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGGCGTTCTCCTTCTTCTaGATGCCTTCATATGTTGCC +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLAFSFF*MPSYVA
Trigger: GGCAACATATGAAGGCATCCAGAAGAAGGAGAACGC...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCCGGGCCTGGTTGATTaGAATTGTAGAACCCTGAAT +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLPGLVD*NCRTLN
Trigger: ATTCAGGGTTCTACAATTCCAATCAACCAGGCCCGG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCGGCACAGGCACCAAGTaGCTCCTTCTTGGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVGTGTK*LLLGEG
Trigger: ACCTTCACCAAGAAGGAGCCACTTGGTGCCTGTGCC...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCGAATTCGTCGTGGATaGCCTCTTCCACAAACAGCC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQRIRRG*PLPQTA
Trigger: GGCTGTTTGTGGAAGAGGCCATCCACGACGAATTCG...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGAGTCCCATCTTTCTCTaGAGCCAAAGCCAGTGGATC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQSPIFL*SQSQWI
Trigger: GATCCACTGGCTTTGGCTGCAGAGAAAGATGGGACT...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCCTGTCCATTGATCTCTaGCCAGGCTCCAGGGACCTT +
Preference number: 4 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGALSIDL*PGSRDL
Trigger: AAGGTCCCTGGAGCCTGGGCAGAGATCAATGGACAG...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCAATCACAGGGGTGTTaGTTAAAATTCGAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLQSQGC*LKFEPR
Trigger: TCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGAAACAGCCGCCCAGCTaGAATGCAGTTCTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQKQPPS*NAVLSF
Trigger: AAAGGAGAGAACTGCATTGCAGCTGGGCGGCTGTTT...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCAAGAAGCCTGGCCTCTaGACCTGTCTTCCTCCATAC +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVKKPGL*TCLPPY
Trigger: GTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTT...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTGTTGCCCCCTCTTCTaGCTGGGGAGTGCGAGGCGC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKCCPLF*LGSARR
Trigger: GCGCCTCGCACTCCCCAGCCAGAAGAGGGGGCAACA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACACCCGCAGAAAAGTACTaGGAGGCTGGAATCATCTTT +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTPAEKY*EAGIIF
Trigger: AAAGATGATTCCAGCCTCCCAGTACTTTTCTGCGGG...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACACCGGGCCTGGTTGATTaGAATTGTAGAACCCTGAAT +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTPGLVD*NCRTLN
Trigger: ATTCAGGGTTCTACAATTCCAATCAACCAGGCCCGG...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CCAGCAGATACAGTCGTGAGAAGCAACATGTCCTGGAGACAGCAAAGTAAGCATCTCCATACACCAGTGTaGCCCCCTCCTGCACCCCAG +
Preference number: 4 (lower is better)
Translates to: PADTVVRSNMSWRQQSKHLHTPV*PPPAPQ
Trigger: CTGGGGTGCAGGAGGGGGCCACACTGGTGTATGGAG...ATGCTTACTTTGCTGTCTCCAGGACATGTTGCTTCTCACGACTGTATCTGCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTTTTCCATCAGCTATaGGTTGGACGGCTTCTACCA +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQLFHQL*VGRLLP
Trigger: TGGTAGAAGCCGTCCAACTCATAGCTGATGGAAAAG...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCTTCCATCTGTGGGGTTaGCAGTGGCGTAAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAFHLWG*QWRKSL
Trigger: GAGAGACTTACGCCACTGTCAACCCCACAGATGGAA...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCACAGACATTCCAATGTaGGTCTTCAGAGCCAGGGTG +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVTDIPM*VFRARV
Trigger: CACCCTGGCTCTGAAGACTCACATTGGAATGTCTGT...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCGGATGTCAGGGTGCTaGGAGAGCCTCTGTCCTGCG +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKRMSGC*ESLCPA
Trigger: CGCAGGACAGAGGCTCTCTCAGCACCCTGACATCCG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGTTTGTCACACCAGCCTaGGAAGTATCTGAACGTCTG +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQFVTPA*EVSERL
Trigger: CAGACGTTCAGATACTTCGCAGGCTGGTGTGACAAA...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGGTGTTATTTGCTCTCTaGAACACCCCATCGATGTCC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQVLFAL*NTPSMS
Trigger: GGACATCGATGGGGTGTTGCAGAGAGCAAATAACAC...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGATATTCAGTGTTATTTaGTCTCTGCAACACCCCATC +
Preference number: 4 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLIFSVI*SLQHPI
Trigger: GATGGGGTGTTGCAGAGAGCAAATAACACTGAATAT...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GCTTGTGTATTGCAGTACATTGCTGTGTATCTGCTGCTCTGTGTGAGGCCCTCAACTCCCACTACTCGGTaGCCCTCTTTCAGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: ACVLQYIAVYLLLCVRPSTPTTR*PSFRSW
Trigger: CCAGCTCCTGAAAGAGGGCCACCGAGTAGTGGGAGT...TGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATACACAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCCCATCAGCTATGAGTTaGACGGCTTCTACCATGGCC +
Preference number: 4 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAPSAMS*TASTMA
Trigger: GGCCATGGTAGAAGCCGTCCAACTCATAGCTGATGG...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CAA 72 bp CTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAAGTaGGGTAGTTTTCCCCCAACTCACACAGTAAGCTGG +
Preference number: 4 (lower is better)
Translates to: LFNTGGGQSSDK*GSFPPTHTVSW
Trigger: CCAGCTTACTGTGTGAGTTGGGGGAAAACTACCCAACTTGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CAA 72 bp ACCACTGTGCCTAGCCCGTTTTTCACTGCACGGCAGTaGGCAGCATCCTGCTGTGTTATGCACTGTGTAAGA +
Preference number: 4 (lower is better)
Translates to: TTVPSPFFTARQ*AASCCVMHCVR
Trigger: TCTTACACAGTGCATAACACAGCAGGATGCTGCCAACTGCCGTGCAGTGAAAAACGGGCTAGGCACAGTGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CCAGCAGATACAGTCGTGAGAAGCAACATGTCCTGGAGACAGCAAAGTAAGCATGTGAGGGGTGGTAGATaGTGGAGCCATGCTTTGGGC +
Preference number: 4 (lower is better)
Translates to: PADTVVRSNMSWRQQSKHVRGGR*WSHALG
Trigger: GCCCAAAGCATGGCTCCATCATCTACCACCCCTCAC...ATGCTTACTTTGCTGTCTCCAGGACATGTTGCTTCTCACGACTGTATCTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCCTTTTCCATCAGCTATaGGTTGGACGGCTTCTACCA +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVLFHQL*VGRLLP
Trigger: TGGTAGAAGCCGTCCAACTCATAGCTGATGGAAAAG...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTTCACCATCTGTCCATTaGTCTCTGCCCAGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLSPSVH*SLPRLQ
Trigger: CTGGAGCCTGGGCAGAGATCAATGGACAGATGGTGA...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGCAAACTGTCCATTTATaGAACACTGGTAGGGGATTT +
Preference number: 4 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLQTVHL*NTGRGF
Trigger: AAATCCCCTACCAGTGTTTCATAAATGGACAGTTTG...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAGCTCTGGCCAATAAGTaGCAACTTCAGCTTGTTTTT +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTALANK*QLQLVF
Trigger: AAAAACAAGCTGAAGTTGGCACTTATTGGCCAGAGC...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCTCTCCTTCTTCTGGATaGCTTCATATGTTGCCCCCT +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVSPSSG*LHMLPP
Trigger: AGGGGGCAACATATGAAGGCATCCAGAAGAAGGAGA...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCCCAGTCTCACAGTACTaGAGCAGCTTTTCCAAGTGC +
Preference number: 4 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAPVSQY*SSFSKC
Trigger: GCACTTGGAAAAGCTGCTGCAGTACTGTGAGACTGG...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATAAGTGTGGCCCCCTCCTaGACCCCAGTCTCACAGTAC +
Preference number: 4 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVISVAPS*TPVSQY
Trigger: GTACTGTGAGACTGGGGTGCAGGAGGGGGCCACACT...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTCAAGGCCATTTTTGGTaGCAAGACCGGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLQGHFW*QDRASW
Trigger: CCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTG...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACAGTTTCTCACCATCAGTaGTTTTCCATCATTCCCAAA +
Preference number: 4 (lower is better)
Translates to: RGRHCYSCLTREEARAQTVSHHQ*FSIIPK
Trigger: TTTGGGAATGATGGAAAAGCACTGATGGTGAGAAAC...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCTTTCCGTCCTCAAACTaGAGGTTTCTCACCATCAGT +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVFPSSN*RFLTIS
Trigger: ACTGATGGTGAGAAACCTGCAGTTTGAGGACGGAAA...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGACTGAATATTATCAGTaGGGATTTGCCACCAAGCTC +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQTEYYQ*GFATKL
Trigger: GAGCTTGGTGGCAAATCCCCACTGATAATATTCAGT...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTACGTCACACGATCTCTaGAGAAGGATGGGTCCTGTA +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLTSHDL*RRMGPV
Trigger: TACAGGACCCATCCTTCTTCAGAGATCGTGTGACGT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCGCACAACCTTTTGGATaGAATCTCCAAACTTGGTGG +
Preference number: 4 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAAQPFG*NLQTWW
Trigger: CCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGC...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCTGAGGTGGATCCAGTaGAGCCAAGCTTGCGGATGT +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKLRWIQ*SQACGC
Trigger: ACATCCGCAAGCTTGGCTTCACTGGATCCACCTCAG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGGATCTGTTTGCCCACTaGGGTGGATCCAGTGAAGCC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKDLFAH*GGSSEA
Trigger: GGCTTCACTGGATCCACCTCAGTGGGCAAACAGATC...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTTTGGCAAGGTACATGTaGTCTTCCACGCCTGTGAAC +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLLARYM*SSTPVN
Trigger: GTTCACAGGCGTGGAAGATCACATGTACCTTGCCAA...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCATCCAAACCATCATCTaGCCAGAAAACAGAAAACCC +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVIQTII*PENRKP
Trigger: GGGTTTTCTGTTTTCTGGGCAGATGATGGTTTGGAT...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCGAATCCAGTTATaGAAACCTTCAGCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLPRIQL*KPSAGW
Trigger: CCAGCCTGCTGAAGGTTTGCATAACTGGATTCGAGG...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGGACCTTAATGGTCTCTaGCACCTTCAGCTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKDLNGL*HLQLLG
Trigger: GCCGAGGAGCTGAAGGTGGCAGAGACCATTAAGGTC...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTAAACAGCCGCCCAGCTaGAATGCAGTTCTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLKQPPS*NAVLSF
Trigger: AAAGGAGAGAACTGCATTGCAGCTGGGCGGCTGTTT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTTCCACCAAATGGGGCTaGCACGTCTGTCTTGTTGTA +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLSTKWG*HVCLVV
Trigger: TACAACAAGACAGACGTGGCAGCCCCATTTGGTGGA...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCTTTCCAAAGCCAGATTaGTTCATTCCACCAAATGGG +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVFPKPD*FIPPNG
Trigger: CCCATTTGGTGGAATGAAGCAATCTGGCTTTGGAAA...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCCTCCGCACAACCTTTTaGATGAAATCTCCAAACTTG +
Preference number: 4 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVLRTTF*MKSPNL
Trigger: CAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAG...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTCTTCATTCCACCAAATaGGGCTGCCACGTCTGTCTT +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLLHSTK*GCHVCL
Trigger: AAGACAGACGTGGCAGCCCCATTTGGTGGAATGAAG...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGCTCCGCAACTCTGTCTaGTCTCTTCCACCAGCCTCA +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLLRNSV*SLPPAS
Trigger: TGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGAG...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTTCCATCTGTGGGGTTaGCAGTGGCGTAAGTCTCTC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKFHLWG*QWRKSL
Trigger: GAGAGACTTACGCCACTGTCAACCCCACAGATGGAA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCGAGTGTCACTGTTTTaGTTTTCAGGTATTCATTCA +
Preference number: 4 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQRVSLF*FSGIHS
Trigger: TGAATGAATACCTGAAAATCAAAACAGTGACACTCG...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GCTTGTGTATTGCAGTACATTGCTGTGTATCTGCTGCTCTGTGTGAGGCCCTCATCTCCTTCTTCTGGATaGCTTCATATGTTGCCCCCT +
Preference number: 4 (lower is better)
Translates to: ACVLQYIAVYLLLCVRPSSPSSG*LHMLPP
Trigger: AGGGGGCAACATATGAAGGCATCCAGAAGAAGGAGA...TGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATACACAAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGCTGTCCATTGATCTCTaGCCAGGCTCCAGGGACCTT +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLLSIDL*PGSRDL
Trigger: AAGGTCCCTGGAGCCTGGGCAGAGATCAATGGACAG...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAAAGGCGTCCTTGGCTaGGGCTACTGCTCTGTCAAC +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLKGVLG*GYCSVN
Trigger: GTTGACAGAGCAGTAGCCGCAGCCAAGGACGCCTTT...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTAAAGTACTGGGAGGCTaGAATCATCTTTCCGTCCTC +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLKVLGG*NHLSVL
Trigger: GAGGACGGAAAGATGATTCCAGCCTCCCAGTACTTT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTCAATCACAGGGGTGTTaGTTAAAATTCGAGCCCAGA +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLQSQGC*LKFEPR
Trigger: TCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTG...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GCTTGTGTATTGCAGTACATTGCTGTGTATCTGCTGCTCTGTGTGAGGCCCTCATTTATTGAAAAACACTaGGCCCATGCCCATCCGTAC +
Preference number: 4 (lower is better)
Translates to: ACVLQYIAVYLLLCVRPSFIEKH*AHAHPY
Trigger: GTACGGATGGGCATGGGCGCAGTGTTTTTCAATAAA...TGAGGGCCTCACACAGAGCAGCAGATACACAGCAATGTACTGCAATACACAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTTTTATTGAAAAACACTaGGCCCATGCCCATCCGTAC +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLFIEKH*AHAHPY
Trigger: GTACGGATGGGCATGGGCGCAGTGTTTTTCAATAAA...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAAAGCAGCTTTTCCAAGTaGGCTCTGTGGTTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFESSFSK*ALWFWG
Trigger: GCCCCAGAACCACAGAGCGCACTTGGAAAAGCTGCT...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTGTCCGAACAGGCTCTaGCCAATAAGTGCCAACTTC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKCPNRL*PISANF
Trigger: GAAGTTGGCACTTATTGGCCAGAGCCTGTTCGGACA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGCGAATTCGTCGTGGATaGCCTCTTCCACAAACAGCC +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLRIRRG*PLPQTA
Trigger: GGCTGTTTGTGGAAGAGGCCATCCACGACGAATTCG...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGCCTTGTCTGGCACTGTaGACACTCCCACTACTCGGT +
Preference number: 4 (lower is better)
Translates to: LGMEYIASINSFLSALCQPCLAL*TLPLLG
Trigger: ACCGAGTAGTGGGAGTGTTCACAGTGCCAGACAAGG...CTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATACGTAAGTTCTACCACTaGTGTCTCACCCGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVIRKFYH*CLTRRK
Trigger: TTTTCTGCGGGTGAGACATCAGTGGTAGAACTTACG...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGGTGGCTCCTTCTTGGTaGAGGTCAGGTTGTAATTCG +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLVAPSW*RSGCNS
Trigger: CGAATTACAACCTGACCTTCACCAAGAAGGAGCCAC...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTCTGAGGTGGATCCAGTaGAGCCAAGCTTGCGGATGT +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFLRWIQ*SQACGC
Trigger: ACATCCGCAAGCTTGGCTTCACTGGATCCACCTCAG...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGCAGCACAGCTTTTCATaGTCTGTTTGCCCACTGAGG +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLQHSFS*SVCPLR
Trigger: CCTCAGTGGGCAAACAGATCATGAAAAGCTGTGCTG...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGATGCCTTCATATGTTaGCCCCTCTTCTGGCTGGGG +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFDAFIC*PLFWLG
Trigger: CCCCAGCCAGAAGAGGGGGCAACATATGAAGGCATC...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CCAGCAGATACAGTCGTGAGAAGCAACATGTCCTGGAGACAGCAAAGTAAGCATTTTCCGTCCTCAAACTaGAGGTTTCTCACCATCAGT +
Preference number: 4 (lower is better)
Translates to: PADTVVRSNMSWRQQSKHFPSSN*RFLTIS
Trigger: ACTGATGGTGAGAAACCTGCAGTTTGAGGACGGAAA...ATGCTTACTTTGCTGTCTCCAGGACATGTTGCTTCTCACGACTGTATCTGCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGAAAGTACTGGGAGGCTaGAATCATCTTTCCGTCCTC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKKVLGG*NHLSVL
Trigger: GAGGACGGAAAGATGATTCCAGCCTCCCAGTACTTT...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATACCCGCAGAAAAGTACTaGGAGGCTGGAATCATCTTT +
Preference number: 4 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVIPAEKY*EAGIIF
Trigger: AAAGATGATTCCAGCCTCCCAGTACTTTTCTGCGGG...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGCCAGCGCTTCTATGGTaGCCAGCTCTTCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLPALLW*PALLGF
Trigger: AAAACCAAGAAGAGCTGGCCACCATAGAAGCGCTGG...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGCAAGGCCATTTTTGGTaGCAAGACCGGGCTTCTTGG +
Preference number: 4 (lower is better)
Translates to: LGMEYIASINSFLSALCQQGHFW*QDRASW
Trigger: CCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTG...CTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCCTCACAACATCCATTaGGCTCGCTCCAGATTTAAA +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKPHNIH*ARSRFK
Trigger: TTTAAATCTGGAGCGAGCTCAATGGATGTTGTGAGG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGAGTTCTCTCCTTTATTaGAAAACACTGCGCCCATGC +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKSSLLY*KTLRPC
Trigger: GCATGGGCGCAGTGTTTTTCAATAAAGGAGAGAACT...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCATCCACCACCATCTCTaGCTCTTCGTCCTCTCCTCT +
Preference number: 4 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGIHHHL*LFVLSS
Trigger: AGAGGAGAGGACGAAGAGGCAGAGATGGTGGTGGAT...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTAAAGGCGTCCTTGGCTaGGGCTACTGCTCTGTCAAC +
Preference number: 4 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSKGVLG*GYCSVN
Trigger: GTTGACAGAGCAGTAGCCGCAGCCAAGGACGCCTTT...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTTATCAGTGGGGATTTaGCACCAAGCTCAAGGGAAA +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKLSVGI*HQAQGK
Trigger: TTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR GCA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCAAGAAGCCTGGCCTCTaGACCTGTCTTCCTCCATAC +
Preference number: 4 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGKKPGL*TCLPPY
Trigger: GTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTT...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTATATTCAGTGTTATTTaGTCTCTGCAACACCCCATC +
Preference number: 4 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLIFSVI*SLQHPI
Trigger: GATGGGGTGTTGCAGAGAGCAAATAACACTGAATAT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAACCAGCGCTTCTATGGTaGCCAGCTCTTCTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFEPALLW*PALLGF
Trigger: AAAACCAAGAAGAGCTGGCCACCATAGAAGCGCTGG...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGACTTCAGCTTGTTTTTaGAATAAACCCGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: RRKEEDRCHILCRINWCLTSACF*NKPGWW
Trigger: CCACCAGCCGGGTTTATTTCAAAAACAAGCTGAAGT...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAACGTAAGTTCTACCACTaGTGTCTCACCCGCAGAAAA +
Preference number: 4 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFERKFYH*CLTRRK
Trigger: TTTTCTGCGGGTGAGACATCAGTGGTAGAACTTACG...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR TCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTCAGCACAGCTTTTCATaGTCTGTTTGCCCACTGAGG +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFQHSFS*SVCPLR
Trigger: CCTCAGTGGGCAAACAGATCATGAAAAGCTGTGCTG...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp AAACAGAATGTGTTTCTAGCAAATTCTAACCTGTGGACTTACCACCATTCTTGTAGCAGCTTTTCCAAGTaGGCTCTGTGGTTCTGGGGC +
Preference number: 4 (lower is better)
Translates to: KQNVFLANSNLWTYHHSCSSFSK*ALWFWG
Trigger: GCCCCAGAACCACAGAGCGCACTTGGAAAAGCTGCT...ACAAGAATGGTGGTAAGTCCACAGGTTAGAATTTGCTAGAAACACATTCTGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTTCCACCAAATGGGGCTaGCACGTCTGTCTTGTTGTA +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFSTKWG*HVCLVV
Trigger: TACAACAAGACAGACGTGGCAGCCCCATTTGGTGGA...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAAACCTCTAATGTCCAGTaGTTCTCCAGAAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFETSNVQ*FSRRHR
Trigger: TCTGTGCCTTCTGGAGAACCACTGGACATTAGAGGT...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CAA 72 bp GACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTaGAATGCACAGCTAAGAAAGGGTTGTCAGTGTTCA +
Preference number: 4 (lower is better)
Translates to: DRCHILCRINWC*NAQLRKGCQCS
Trigger: TGAACACTGACAACCCTTTCTTAGCTGTGCATTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CAA 72 bp GCCAATAAGAGGGTCTCCTCCGAACTTTACAGTACTTaGTCCCAAGTATGTAAATGTGGAAGAAAGGCTCAG +
Preference number: 4 (lower is better)
Translates to: ANKRVSSELYST*SQVCKCGRKAQ
Trigger: CTGAGCCTTTCTTCCACATTTACATACTTGGGACAAAGTACTGTAAAGTTCGGAGGAGACCCTCTTATTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
3UTR CAA 72 bp TTGCTGCACATCAGTTCTGTGCTCAGGAATTCCCCTTaGTCTGGTTGCATGTCAGTGGTGATAATCAAACTT +
Preference number: 4 (lower is better)
Translates to: LLHISSVLRNSP*SGCMSVVIIKL
Trigger: AAGTTTGATTATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGATGTGCAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
3UTR CAA 72 bp AGAGCAAAGCATCACTGTGGCCCTCCACACATTACTTaGACTCATGTACTATGGCAGAGTACATTTCCATGT +
Preference number: 4 (lower is better)
Translates to: RAKHHCGPPHIT*THVLWQSTFPC
Trigger: ACATGGAAATGTACTCTGCCATAGTACATGAGTCAAAGTAATGTGTGGAGGGCCACAGTGATGCTTTGCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATAGTTTCTCACCATCAGTaGTTTTCCATCATTCCCAAA +
Preference number: 4 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVIVSHHQ*FSIIPK
Trigger: TTTGGGAATGATGGAAAAGCACTGATGGTGAGAAAC...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTTTTCACGGTCAGCTCTaGAAACTTCAGAGCCGTCAA +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFFHGQL*KLQSRQ
Trigger: TTGACGGCTCTGAAGTTTGCAGAGCTGACCGTGAAA...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp TATAGCGTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCGTGTTATTTGCTCTCTaGAACACCCCATCGATGTCC +
Preference number: 4 (lower is better)
Translates to: YSVNKLFPLSFVSVKFLGVLFAL*NTPSMS
Trigger: GGACATCGATGGGGTGTTGCAGAGAGCAAATAACAC...GCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGACGCTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp GGCCTTACTTGGGATGGAATATATAGCGTCAATAAACTCTTTCCTCTCAGCTTTACCTCTAATGTCCAGTaGTTCTCCAGAAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: GLTWDGIYSVNKLFPLSFTSNVQ*FSRRHR
Trigger: TCTGTGCCTTCTGGAGAACCACTGGACATTAGAGGT...AAAGCTGAGAGGAAAGAGTTTATTGACGCTATATATTCCATCCCAAGTAAGGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp AAACAGAATGTGTTTCTAGCAAATTCTAACCTGTGGACTTACCACCATTCTTGTCTTCTACCATGGCCTTaGTCCCCTCAGGAAAAAGGA +
Preference number: 4 (lower is better)
Translates to: KQNVFLANSNLWTYHHSCLLPWP*SPQEKG
Trigger: TCCTTTTTCCTGAGGGGATCAAGGCCATGGTAGAAG...ACAAGAATGGTGGTAAGTCCACAGGTTAGAATTTGCTAGAAACACATTCTGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCGAGTGTCACTGTTTTaGTTTTCAGGTATTCATTCA +
Preference number: 4 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKRVSLF*FSGIHS
Trigger: TGAATGAATACCTGAAAATCAAAACAGTGACACTCG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAACTCCGCACAACCTTTTaGATGAAATCTCCAAACTTG +
Preference number: 4 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFELRTTF*MKSPNL
Trigger: CAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAG...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CCA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTTCTCTTCCACCACTCTaGTTACGAATTCGTCGTGGA +
Preference number: 4 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSSLPPL*LRIRRG
Trigger: TCCACGACGAATTCGTAACCAGAGTGGTGGAAGAGA...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR GCA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTTTTCCAAAGCCAGATTaGTTCATTCCACCAAATGGG +
Preference number: 4 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSFPKPD*FIPPNG
Trigger: CCCATTTGGTGGAATGAAGCAATCTGGCTTTGGAAA...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CCA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTACTGAATATTATCAGTaGGGATTTGCCACCAAGCTC +
Preference number: 4 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSTEYYQ*GFATKL
Trigger: GAGCTTGGTGGCAAATCCCCACTGATAATATTCAGT...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR TCA 90 bp ATCTCAAGTCAGTGTAAAATGAGTCAAGATGTCAGGACAGGCTACTTCTACAAACAAACTGTCCATTTATaGAACACTGGTAGGGGATTT +
Preference number: 4 (lower is better)
Translates to: ISSQCKMSQDVRTGYFYKQTVHL*NTGRGF
Trigger: AAATCCCCTACCAGTGTTTCATAAATGGACAGTTTG...TTTGTAGAAGTAGCCTGTCCTGACATCTTGACTCATTTTACACTGACTTGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACATTGAGCACCAGGGTGTaGCCTGCCGCCAGGCACGCT +
Preference number: 5 (lower is better)
Translates to: RGRHCYSCLTREEARAQTLSTRV*PAARHA
Trigger: AGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAA...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS GCA 90 bp TCCACGCCTGTGAACACAGTGGGTTCCATGAAGAAGCCTGGCCTCTaGACCTGTCTTCCTCCATACACCAGTGTGGCCCCCTCCTGCACC +
Preference number: 5 (lower is better)
Translates to: STPVNTVGSMKKPGL*TCLPPYTSVAPSCT
Trigger: GGTGCAGGAGGGGGCCACACTGGTGTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGTTCACAGGCGTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGTTCGGCCGGGCCTGGTaGATTGGAATTGTAGAACCC +
Preference number: 5 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLFGRAW*IGIVEP
Trigger: GGGTTCTACAATTCCAATCAACCAGGCCCGGCCGAA...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCGGATGCCTTCATATGTaGCCCCCTCTTCTGGCTGGG +
Preference number: 5 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVGCLHM*PPLLAG
Trigger: CCCAGCCAGAAGAGGGGGCAACATATGAAGGCATCC...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCTTCTCAAAGGCGTCCTaGGCTGCGGCTACTGCTCTG +
Preference number: 5 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVFSKAS*AAATAL
Trigger: CAGAGCAGTAGCCGCAGCCAAGGACGCCTTTGAGAA...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGATTATCAGTGGGGATTaGCCACCAAGCTCAAGGGAA +
Preference number: 5 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLIISGD*PPSSRE
Trigger: TTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAAT...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS GCA 90 bp GAAGGGGAGCACGTTGAGCTCGGCTCCCACCGACTGGTAAGCTTCTaGTACCTCCTTGATGGTTTTACCCTTGAGTCTCCATCGAGGGAA +
Preference number: 5 (lower is better)
Translates to: EGEHVELGSHRLVSF*YLLDGFTLESPSRE
Trigger: TTCCCTCGATGGAGACTCAAGGGTAAAACCATCAAGGAGGTAGCAGAAGCTTACCAGTCGGTGGGAGCCGAGCTCAACGTGCTCCCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp CATAGCCTGGTTGACCTCAGGTCAGCAATAAGGACCCTGCCCTGCCCTGGCCTGATGATTAGTGTCCAGTaGATGGCAGAAGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: HSLVDLRSAIRTLPCPGLMISVQ*MAEAPL
Trigger: CAGAGGAGCTTCTGCCATCAACTGGACACTAATCAT...CAGGCCAGGGCAGGGCAGGGTCCTTATTGCTGACCTGAGGTCAACCAGGCTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGGAAACTTTCTTCAGGTaGCTCACAGCACAGCTTTTC +
Preference number: 5 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLETFFR*LTAQLF
Trigger: GAAAAGCTGTGCTGTGAGCAACCTGAAGAAAGTTTC...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 90 bp TCAGAGCCAGGGTGTAGACAGCCCCGGAATCCAGCGCTTCTATGGTaGCCAGCTCTTCTTGGTTTTCTTCCATTAGGTCAGCGAGTCTGT +
Preference number: 5 (lower is better)
Translates to: SEPGCRQPRNPALLW*PALLGFLPLGQRVC
Trigger: ACAGACTCGCTGACCTAATGGAAGAAAACCAAGAAGAGCTGGCCACCATAGAAGCGCTGGATTCCGGGGCTGTCTACACCCTGGCTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGATGTTAATCACCCCCTaGGGAAAGCCAGCTTTCACG +
Preference number: 5 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQMLITP*GKPAFT
Trigger: CGTGAAAGCTGGCTTTCCCAAGGGGGTGATTAACAT...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AGACAGGAGGTCACTGACTCCCCTGACCACACACAGCCAGTGAGCAGCAGAGCCCAGTTCTCTCCTTTATaGAAAAACACTGCGCCCATG +
Preference number: 5 (lower is better)
Translates to: RQEVTDSPDHTQPVSSRAQFSPL*KNTAPM
Trigger: CATGGGCGCAGTGTTTTTCAATAAAGGAGAGAACTG...GGCTCTGCTGCTCACTGGCTGTGTGTGGTCAGGGGAGTCAGTGACCTCCTGTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp GTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGCATATTCAGTGTTATTaGCTCTCTGCAACACCCCAT +
Preference number: 5 (lower is better)
Translates to: VASRRPLLPHLRQGLQLLHIQCY*LSATPH
Trigger: ATGGGGTGTTGCAGAGAGCAAATAACACTGAATATG...CAGGAGCTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 90 bp TGTAGACGTCTTCATTCTGCAGCTGAAGCCCTCCGCAACTCTGTCTaGTCTCTTCCACCAGCCTCACAACATCCATTGAGCTCGCTCCAG +
Preference number: 5 (lower is better)
Translates to: CRRLHSAAEALRNSV*SLPPASQHPLSSLQ
Trigger: CTGGAGCGAGCTCAATGGATGTTGTGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGAGGGCTTCAGCTGCAGAATGAAGACGTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGTCAATCACAGGGGTGTaGCTTAAAATTCGAGCCCAG +
Preference number: 5 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQSITGV*LKIRAQ
Trigger: CTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGA...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp TACTTTGTGGCTTCCAGACGGCCCCTCCTTCCTCATCTCCGTCAGGGTCTTCAGATTATCAGTGGGGATTaGCCACCAAGCTCAAGGGAA +
Preference number: 5 (lower is better)
Translates to: YFVASRRPLLPHLRQGLQIISGD*PPSSRE
Trigger: TTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAAT...CTGAAGACCCTGACGGAGATGAGGAAGGAGGGGCCGTCTGGAAGCCACAAAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 90 bp CCAGCTCTTCTTGGTTTTCTTCCATTAGGTCAGCGAGTCTGTACATaGGTCTTCCTCTGTCTCTGGCGTTCATCCTCCCCCATTCGCCGT +
Preference number: 5 (lower is better)
Translates to: PALLGFLPLGQRVCT*VFLCLWRSSSPIRR
Trigger: ACGGCGAATGGGGGAGGATGAACGCCAGAGACAGAGGAAGACTCATGTACAGACTCGCTGACCTAATGGAAGAAAACCAAGAAGAGCTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCCTTTTCATGATCTGTTaGCCCACTGAGGTGGATCCA +
Preference number: 5 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVLFMIC*PTEVDP
Trigger: TGGATCCACCTCAGTGGGCAAACAGATCATGAAAAG...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCTGGAGACAGCAAAGTAAGCATCCAAGGACAAGGTGACCCTTTTCCTGGTGCCATGATTAGTGTCCAGTaGATGGCAGAAGCTCCTCTG +
Preference number: 5 (lower is better)
Translates to: PGDSKVSIQGQGDPFPGAMISVQ*MAEAPL
Trigger: CAGAGGAGCTTCTGCCATCAACTGGACACTAATCAT...GGCACCAGGAAAAGGGTCACCTTGTCCTTGGATGCTTACTTTGCTGTCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCGAAACTTTCTTCAGGTaGCTCACAGCACAGCTTTTC +
Preference number: 5 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVETFFR*LTAQLF
Trigger: GAAAAGCTGTGCTGTGAGCAACCTGAAGAAAGTTTC...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 90 bp TCCGCAACTCTGTCTGATCTCTTCCACCAGCCTCACAACATCCATTaGGCTCGCTCCAGATTTAAAGAAGTCCGTGGAGTCCTCAATCAC +
Preference number: 5 (lower is better)
Translates to: SATLSDLFHQPHNIH*ARSRFKEVRGVLNH
Trigger: GTGATTGAGGACTCCACGGACTTCTTTAAATCTGGAGCGAGCTCAATGGATGTTGTGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 90 bp CTGCCTCTTCGTCCTCTCCTCTCAGTCTCCGCACAACCTTTTGGATaGAATCTCCAAACTTGGTGGCCATGTAGACGTCTTCATTCTGCA +
Preference number: 5 (lower is better)
Translates to: LPLRPLLSVSAQPFG*NLQTWWPCRRLHSA
Trigger: TGCAGAATGAAGACGTCTACATGGCCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGACTGAGAGGAGAGGACGAAGAGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCTTCCTCATCTCCGTCAGGGTCTTCAGCTCCTGAAGCATTGAAGTGGGCTGTCTCTCCGCACAACCTTTaGGATGAAATCTCCAAACTT +
Preference number: 5 (lower is better)
Translates to: PSSSPSGSSAPEALKWAVSPHNL*DEISKL
Trigger: AAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGA...GACAGCCCACTTCAATGCTTCAGGAGCTGAAGACCCTGACGGAGATGAGGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGTTCTCAAAGGCGTCCTaGGCTGCGGCTACTGCTCTG +
Preference number: 5 (lower is better)
Translates to: RRKEEDRCHILCRINWCLFSKAS*AAATAL
Trigger: CAGAGCAGTAGCCGCAGCCAAGGACGCCTTTGAGAA...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CGCGGAAGGCACTGCTACTCCTGTTTAACACGGGAGGAGGCCAGAGCTCAGACATCGAGTGTCACTGTTTaGATTTTCAGGTATTCATTC +
Preference number: 5 (lower is better)
Translates to: RGRHCYSCLTREEARAQTSSVTV*IFRYSF
Trigger: GAATGAATACCTGAAAATCAAAACAGTGACACTCGA...TGTCTGAGCTCTGGCCTCCTCCCGTGTTAAACAGGAGTAGCAGTGCCTTCCGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 90 bp CTGCGCCCATGCCCATCCGTACAGCCTTTTCAAGGTCACAATCACTaGATATTATCAGTGGGGATTTGCCACCAAGCTCAAGGGAAACTT +
Preference number: 5 (lower is better)
Translates to: LRPCPSVQPFQGHNH*ILSVGICHQAQGKL
Trigger: AAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAATATTCAGTGATTGTGACCTTGAAAAGGCTGTACGGATGGGCATGGGCGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 90 bp TTCATCTTTTTAATCTCTTCCACCACTCTGGTTACGAATTCGTCGTaGATGGCCTCTTCCACAAACAGCCGCCCAGCTGCAATGCAGTTC +
Preference number: 5 (lower is better)
Translates to: FIFLISSTTLVTNSS*MASSTNSRPAAMQF
Trigger: GAACTGCATTGCAGCTGGGCGGCTGTTTGTGGAAGAGGCCATCCACGACGAATTCGTAACCAGAGTGGTGGAAGAGATTAAAAAGATGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGTTCGGCCGGGCCTGGTaGATTGGAATTGTAGAACCC +
Preference number: 5 (lower is better)
Translates to: RRKEEDRCHILCRINWCLFGRAW*IGIVEP
Trigger: GGGTTCTACAATTCCAATCAACCAGGCCCGGCCGAA...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CCAGCAGATACAGTCGTGAGAAGCAACATGTCCTGGAGACAGCAAAGTAAGCATATGTTAATCACCCCCTaGGGAAAGCCAGCTTTCACG +
Preference number: 5 (lower is better)
Translates to: PADTVVRSNMSWRQQSKHMLITP*GKPAFT
Trigger: CGTGAAAGCTGGCTTTCCCAAGGGGGTGATTAACAT...ATGCTTACTTTGCTGTCTCCAGGACATGTTGCTTCTCACGACTGTATCTGCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS TCA 90 bp GAAAAAGGAACCGGTTATAAAGCGAGTCCACTGTGTCATTGGGCTTaGCGTCACACGATCTCTGAAGAAGGATGGGTCCTGTATCCAAAC +
Preference number: 5 (lower is better)
Translates to: EKGTGYKASPLCHWA*RHTISEEGWVLYPN
Trigger: GTTTGGATACAGGACCCATCCTTCTTCAGAGATCGTGTGACGTCAAGCCCAATGACACAGTGGACTCGCTTTATAACCGGTTCCTTTTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp TTCCGATGCTCACAACATGCAAACCCTTATCAAATTGTAAACTTCATATTTGTGTTGAGCACCAGGGTGTaGCCTGCCGCCAGGCACGCT +
Preference number: 5 (lower is better)
Translates to: FRCSQHANPYQIVNFIFVLSTRV*PAARHA
Trigger: AGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAA...CACAAATATGAAGTTTACAATTTGATAAGGGTTTGCATGTTGTGAGCATCGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp ATCAGTTCTGTGCTCAGGAATTCCCCTTTGTCTGGTTGCATGTCAGTGGTGATATCAATCACAGGGGTGTaGCTTAAAATTCGAGCCCAG +
Preference number: 5 (lower is better)
Translates to: ISSVLRNSPLSGCMSVVISITGV*LKIRAQ
Trigger: CTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGA...TATCACCACTGACATGCAACCAGACAAAGGGGAATTCCTGAGCACAGAACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp GTCAATAAACTCTTTCCTCTCAGCTTTGTGTCAGTAAAGTTCTTGGGCTTAAGTGTCACCATCTGTCCATaGATCTCTGCCCAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: VNKLFPLSFVSVKFLGLSVTICP*ISAQAP
Trigger: TGGAGCCTGGGCAGAGATCAATGGACAGATGGTGAC...ACTTAAGCCCAAGAACTTTACTGACACAAAGCTGAGAGGAAAGAGTTTATTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGCAGTTCTCTCCTTTATaGAAAAACACTGCGCCCATG +
Preference number: 5 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKQFSPL*KNTAPM
Trigger: CATGGGCGCAGTGTTTTTCAATAAAGGAGAGAACTG...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 90 bp CATCCGTACAGCCTTTTCAAGGTCACAATCACTGAATATTATCAGTaGGGATTTGCCACCAAGCTCAAGGGAAACTTTCTTCAGGTTGCT +
Preference number: 5 (lower is better)
Translates to: HPYSLFKVTITEYYQ*GFATKLKGNFLQVA
Trigger: AGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAATATTCAGTGATTGTGACCTTGAAAAGGCTGTACGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTCTCCGCACAACCTTTaGGATGAAATCTCCAAACTT +
Preference number: 5 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKSPHNL*DEISKL
Trigger: AAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AACCCTCTTCTTGGTTCTAGTATCTACTTTGTGGCTTCCAGACGGCCCCTCCTTATCGATGTCCCCATTTaGGAATTTAGAAATGACCAT +
Preference number: 5 (lower is better)
Translates to: NPLLGSSIYFVASRRPLLIDVPI*EFRNDH
Trigger: ATGGTCATTTCTAAATTCCAAAATGGGGACATCGAT...AAGGAGGGGCCGTCTGGAAGCCACAAAGTAGATACTAGAACCAAGAAGAGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp CTCAGAAGCTGCCTGTCTGTCACAGTGGGTTACAAAATAGTCAAAGGCACAAAGTTTTCCAAAGCCAGATaGCTTCATTCCACCAAATGG +
Preference number: 5 (lower is better)
Translates to: LRSCLSVTVGYKIVKGTKFSKAR*LHSTKW
Trigger: CCATTTGGTGGAATGAAGCAATCTGGCTTTGGAAAA...CTTTGTGCCTTTGACTATTTTGTAACCCACTGTGACAGACAGGCAGCTTCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp GAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGAATTTTCCAAAGCCAGATaGCTTCATTCCACCAAATGG +
Preference number: 5 (lower is better)
Translates to: EKGRRQVSHSLQDKLVFEFSKAR*LHSTKW
Trigger: CCATTTGGTGGAATGAAGCAATCTGGCTTTGGAAAA...TTCAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AAACAGAATGTGTTTCTAGCAAATTCTAACCTGTGGACTTACCACCATTCTTGTCTTTTCATGATCTGTTaGCCCACTGAGGTGGATCCA +
Preference number: 5 (lower is better)
Translates to: KQNVFLANSNLWTYHHSCLFMIC*PTEVDP
Trigger: TGGATCCACCTCAGTGGGCAAACAGATCATGAAAAG...ACAAGAATGGTGGTAAGTCCACAGGTTAGAATTTGCTAGAAACACATTCTGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGATCGATGTCCCCATTTaGGAATTTAGAAATGACCAT +
Preference number: 5 (lower is better)
Translates to: RRKEEDRCHILCRINWCLIDVPI*EFRNDH
Trigger: ATGGTCATTTCTAAATTCCAAAATGGGGACATCGAT...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp AGGAGAAAGGAAGAAGACAGGTGTCACATTCTCTGCAGGATAAACTGGTGTTTGTCGAGTGTCACTGTTTaGATTTTCAGGTATTCATTC +
Preference number: 5 (lower is better)
Translates to: RRKEEDRCHILCRINWCLSSVTV*IFRYSF
Trigger: GAATGAATACCTGAAAATCAAAACAGTGACACTCGA...CAAACACCAGTTTATCCTGCAGAGAATGTGACACCTGTCTTCTTCCTTTCTCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS-3UTR CAA 90 bp TTCCGATGCTCACAACATGCAAACCCTTATCAAATTGTAAACTTCATATTTGTGGCTTCTGCTACCTCCTaGATGGTTTTACCCTTGAGT +
Preference number: 5 (lower is better)
Translates to: FRCSQHANPYQIVNFIFVASATS*MVLPLS
Trigger: ACTCAAGGGTAAAACCATCAAGGAGGTAGCAGAAGC...CACAAATATGAAGTTTACAATTTGATAAGGGTTTGCATGTTGTGAGCATCGGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS-3UTR CAA 90 bp TTCCGATGCTCACAACATGCAAACCCTTATCAAATTGTAAACTTCATATTTGTGCATATTCAGTGTTATTaGCTCTCTGCAACACCCCAT +
Preference number: 5 (lower is better)
Translates to: FRCSQHANPYQIVNFIFVHIQCY*LSATPH
Trigger: ATGGGGTGTTGCAGAGAGCAAATAACACTGAATATG...CACAAATATGAAGTTTACAATTTGATAAGGGTTTGCATGTTGTGAGCATCGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020497.14
CDS CAA 72 bp AAGGGTGTGACCTGTGCAGGCTTGAGCACCAGGGTGTaGCCTGCCGCCAGGCACGCTGCGCTCTTCCAGGCC +
Preference number: 6 (lower is better)
Translates to: KGVTCAGLSTRV*PAARHAALFQA
Trigger: GGCCTGGAAGAGCGCAGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAAGCCTGCACAGGTCACACCCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp AGAGCCGTCAAGGGTGTGACCTGTGCAGGCTTGAGCACCAGGGTGTaGCCTGCCGCCAGGCACGCTGCGCTCTTCCAGGCCAGCATCATC +
Preference number: 6 (lower is better)
Translates to: RAVKGVTCAGLSTRV*PAARHAALFQASII
Trigger: GATGATGCTGGCCTGGAAGAGCGCAGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAAGCCTGCACAGGTCACACCCTTGACGGCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp AGCTCTGCAAACTTCAGAGCCGTCAAGGGTGTGACCTGTGCAGGCTaGAGCACCAGGGTGTTGCCTGCCGCCAGGCACGCTGCGCTCTTC +
Preference number: 6 (lower is better)
Translates to: SSANFRAVKGVTCAG*STRVLPAARHAALF
Trigger: GAAGAGCGCAGCGTGCCTGGCGGCAGGCAACACCCTGGTGCTCAAGCCTGCACAGGTCACACCCTTGACGGCTCTGAAGTTTGCAGAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS GCA 72 bp GTGAACACAGTGGGTTCCATGAAGAAGCCTGGCCTCTaGACCTGTCTTCCTCCATACACCAGTGTGGCCCCC +
Preference number: 6 (lower is better)
Translates to: VNTVGSMKKPGL*TCLPPYTSVAP
Trigger: GGGGGCCACACTGGTGTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGTTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp TGCCACCTTCAGCTCCTCGGCCGTAAGTTCTACCACTaGTGTCTCACCCGCAGAAAAGTACTGGGAGGCTGG +
Preference number: 6 (lower is better)
Translates to: CHLQLLGRKFYH*CLTRRKVLGGW
Trigger: CCAGCCTCCCAGTACTTTTCTGCGGGTGAGACATCAGTGGTAGAACTTACGGCCGAGGAGCTGAAGGTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp TACTGCAGCAGCTTTTCCAAGTGCGCTCTGTGGTTCTaGGGCCCATGGTCCGTAGATCTGTCCAGGGGATCT +
Preference number: 6 (lower is better)
Translates to: YCSSFSKCALWF*GPWSVDLSRGS
Trigger: AGATCCCCTGGACAGATCTACGGACCATGGGCCCCAGAACCACAGAGCGCACTTGGAAAAGCTGCTGCAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp TCACAGTACTGCAGCAGCTTTTCCAAGTGCGCTCTGTaGTTCTGGGGCCCATGGTCCGTAGATCTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: SQYCSSFSKCAL*FWGPWSVDLSR
Trigger: CCTGGACAGATCTACGGACCATGGGCCCCAGAACCACAGAGCGCACTTGGAAAAGCTGCTGCAGTACTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp TCTCTTCCACCACTCTGGTTACGAATTCGTCGTGGATaGCCTCTTCCACAAACAGCCGCCCAGCTGCAATGC +
Preference number: 6 (lower is better)
Translates to: SLPPLWLRIRRG*PLPQTAAQLQC
Trigger: GCATTGCAGCTGGGCGGCTGTTTGTGGAAGAGGCCATCCACGACGAATTCGTAACCAGAGTGGTGGAAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp CACGCCTGTGAACACAGTGGGTTCCATGAAGAAGCCTaGCCTCTGCACCTGTCTTCCTCCATACACCAGTGT +
Preference number: 6 (lower is better)
Translates to: HACEHSGFHEEA*PLHLSSSIHQC
Trigger: ACACTGGTGTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGTTCACAGGCGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp TTCTGGATGCCTTCATATGTTGCCCCCTCTTCTGGCTaGGGAGTGCGAGGCGCTTTTCCATCAGCTATGAGT +
Preference number: 6 (lower is better)
Translates to: FWMPSYVAPSSG*GVRGAFPSAMS
Trigger: ACTCATAGCTGATGGAAAAGCGCCTCGCACTCCCCAGCCAGAAGAGGGGGCAACATATGAAGGCATCCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp GGGTGTAGACAGCCCCGGAATCCAGCGCTTCTATGGTaGCCAGCTCTTCTTGGTTTTCTTCCATTAGGTCAG +
Preference number: 6 (lower is better)
Translates to: GCRQPRNPALLW*PALLGFLPLGQ
Trigger: CTGACCTAATGGAAGAAAACCAAGAAGAGCTGGCCACCATAGAAGCGCTGGATTCCGGGGCTGTCTACACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 72 bp AGGACAAGGCCATTTTTGGTGACAAGACCGGGCTTCTaGGCACCTCTAATGTCCAGTGGTTCTCCAGAAGGC +
Preference number: 6 (lower is better)
Translates to: RTRPFLVTRPGF*APLMSSGSPEG
Trigger: GCCTTCTGGAGAACCACTGGACATTAGAGGTGCCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTGTCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp ACCGGTTATAAAGCGAGTCCACTGTGTCATTGGGCTTaGCGTCACACGATCTCTGAAGAAGGATGGGTCCTG +
Preference number: 6 (lower is better)
Translates to: TGYKASPLCHWA*RHTISEEGWVL
Trigger: CAGGACCCATCCTTCTTCAGAGATCGTGTGACGTCAAGCCCAATGACACAGTGGACTCGCTTTATAACCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp CTTGGTTTTCTTCCATTAGGTCAGCGAGTCTGTACATaGGTCTTCCTCTGTCTCTGGCGTTCATCCTCCCCC +
Preference number: 6 (lower is better)
Translates to: LGFLPLGQRVCT*VFLCLWRSSSP
Trigger: GGGGGAGGATGAACGCCAGAGACAGAGGAAGACTCATGTACAGACTCGCTGACCTAATGGAAGAAAACCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CCA 72 bp GGTAGGGGATTTTCACTGTCATCCCGTTCACCTCCTTaGAAACGTAATCCACCACCATCTCTGCCTCTTCGT +
Preference number: 6 (lower is better)
Translates to: GRGFSLSSRSPP*KRNPPPSLPLR
Trigger: ACGAAGAGGCAGAGATGGTGGTGGATTACGTTTCCAAGGAGGTGAACGGGATGACAGTGAAAATCCCCTACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp CTGTCTGATCTCTTCCACCAGCCTCACAACATCCATTaGGCTCGCTCCAGATTTAAAGAAGTCCGTGGAGTC +
Preference number: 6 (lower is better)
Translates to: LSDLFHQPHNIH*ARSRFKEVRGV
Trigger: GACTCCACGGACTTCTTTAAATCTGGAGCGAGCTCAATGGATGTTGTGAGGCTGGTGGAAGAGATCAGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp CGTCCTCTCCTCTCAGTCTCCGCACAACCTTTTGGATaGAATCTCCAAACTTGGTGGCCATGTAGACGTCTT +
Preference number: 6 (lower is better)
Translates to: RPLLSVSAQPFG*NLQTWWPCRRL
Trigger: AAGACGTCTACATGGCCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGACTGAGAGGAGAGGACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp TTCCCAAAAAGGACAAGGCCATTTTTGGTGACAAGACCGGGCTTCTaGGCACCTCTAATGTCCAGTGGTTCTCCAGAAGGCACAGAACTA +
Preference number: 6 (lower is better)
Translates to: FPKRTRPFLVTRPGF*APLMSSGSPEGTEL
Trigger: TAGTTCTGTGCCTTCTGGAGAACCACTGGACATTAGAGGTGCCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTGTCCTTTTTGGGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp GCTCCAGATTTAAAGAAGTCCGTGGAGTCCTCAATCACAGGGGTGTaGCTTAAAATTCGAGCCCAGATGACCTTAATGGTCTCTGCCACC +
Preference number: 6 (lower is better)
Translates to: APDLKKSVESSITGV*LKIRAQMTLMVSAT
Trigger: GGTGGCAGAGACCATTAAGGTCATCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGAGGACTCCACGGACTTCTTTAAATCTGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp CATCTCTGCCTCTTCGTCCTCTCCTCTCAGTCTCCGCACAACCTTTaGGATGAAATCTCCAAACTTGGTGGCCATGTAGACGTCTTCATT +
Preference number: 6 (lower is better)
Translates to: HLCLFVLSSQSPHNL*DEISKLGGHVDVFI
Trigger: AATGAAGACGTCTACATGGCCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGACTGAGAGGAGAGGACGAAGAGGCAGAGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp ATCAGTGGGGATTTGCCACCAAGCTCAAGGGAAACTTTCTTCAGGTaGCTCACAGCACAGCTTTTCATGATCTGTTTGCCCACTGAGGTG +
Preference number: 6 (lower is better)
Translates to: ISGDLPPSSRETFFR*LTAQLFMICLPTEV
Trigger: CACCTCAGTGGGCAAACAGATCATGAAAAGCTGTGCTGTGAGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp TCCACTGTGTCATTGGGCTTGACGTCACACGATCTCTaGAGAAGGATGGGTCCTGTATCCAAACCATCATCT +
Preference number: 6 (lower is better)
Translates to: STVSLGLTSHDL*RRMGPVSKPSS
Trigger: AGATGATGGTTTGGATACAGGACCCATCCTTCTTCAGAGATCGTGTGACGTCAAGCCCAATGACACAGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 72 bp GATTTGCCACCAAGCTCAAGGGAAACTTTCTTCAGGTaGCTCACAGCACAGCTTTTCATGATCTGTTTGCCC +
Preference number: 6 (lower is better)
Translates to: DLPPSSRETFFR*LTAQLFMICLP
Trigger: GGGCAAACAGATCATGAAAAGCTGTGCTGTGAGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS TCA 72 bp TGCCCATCCGTACAGCCTTTTCAAGGTCACAATCACTaGATATTATCAGTGGGGATTTGCCACCAAGCTCAA +
Preference number: 6 (lower is better)
Translates to: CPSVQPFQGHNH*ILSVGICHQAQ
Trigger: TTGAGCTTGGTGGCAAATCCCCACTGATAATATTCAGTGATTGTGACCTTGAAAAGGCTGTACGGATGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 72 bp TTAAAGAAGTCCGTGGAGTCCTCAATCACAGGGGTGTaGCTTAAAATTCGAGCCCAGATGACCTTAATGGTC +
Preference number: 6 (lower is better)
Translates to: LKKSVESSITGV*LKIRAQMTLMV
Trigger: GACCATTAAGGTCATCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGAGGACTCCACGGACTTCTTTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 90 bp ACAGCCTTTTCAAGGTCACAATCACTGAATATTATCAGTGGGGATTaGCCACCAAGCTCAAGGGAAACTTTCTTCAGGTTGCTCACAGCA +
Preference number: 6 (lower is better)
Translates to: TAFSRSQSLNIISGD*PPSSRETFFRLLTA
Trigger: TGCTGTGAGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAATATTCAGTGATTGTGACCTTGAAAAGGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8
CDS CAA 72 bp TCAAGGTCACAATCACTGAATATTATCAGTGGGGATTaGCCACCAAGCTCAAGGGAAACTTTCTTCAGGTTG +
Preference number: 6 (lower is better)
Translates to: SRSQSLNIISGD*PPSSRETFFRL
Trigger: CAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCACTGATAATATTCAGTGATTGTGACCTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020497.14
ENSMUST00000146640.8