RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH1L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030088

Ensembl transcript IDs: ENSMUST00000032175.11, ENSMUST00000130418.8, ENSMUST00000203111.2, ENSMUST00000204796.3

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGGCACCTGCGTCCAGGGCCTCAATGGTGGCTAGCTCTTCCTGGTaGTGCTCCATGAGGTCCGCCAACCTGTACAGGAGCCGGCCCCGG +
Preference number: 1 (lower is better)
Translates to: TAPASRASMVASSSW*CSMRSANLYRSRPR
Trigger: CCGGGGCCGGCTCCTGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACGCAGGTGCCGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 90 bp GCACCTGCGTCCAGGGCCTCAATGGTGGCTAGCTCTTCCTGGTGCTaGTCCATGAGGTCCGCCAACCTGTACAGGAGCCGGCCCCGGTCA +
Preference number: 1 (lower is better)
Translates to: APASRASMVASSSWC*SMRSANLYRSRPRS
Trigger: TGACCGGGGCCGGCTCCTGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACGCAGGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 90 bp GGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTaGAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGAC +
Preference number: 1 (lower is better)
Translates to: GVLSPAGVQAKSSSS*KEQCWGQEGAKSPD
Trigger: GTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
3UTR TCA 90 bp CCCTGCTGTAGACCCCAGGCTACCATTGTGGCTGTCCAAGTCCACTaGGTGAGAACCCGGGTCCTGGCAGAGGAGACTGGGGTGCTTGAT +
Preference number: 1 (lower is better)
Translates to: PCCRPQATIVAVQVH*VRTRVLAEETGVLD
Trigger: ATCAAGCACCCCAGTCTCCTCTGCCAGGACCCGGGTTCTCACTCAGTGGACTTGGACAGCCACAATGGTAGCCTGGGGTCTACAGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 90 bp CCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTaGGCCTCATGGTTCTGCGGGCCATGGTTGGTATCTCTGTCCAGG +
Preference number: 1 (lower is better)
Translates to: PSFTPRWQYSTSFLR*ASWFCGPWLVSLSR
Trigger: CCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 90 bp TACTCCACCAGCTTCCTCAGGTGGGCCTCATGGTTCTGCGGGCCATaGTTGGTATCTCTGTCCAGGGGGTTGCCGATTTTCATCTTCCCT +
Preference number: 1 (lower is better)
Translates to: YSTSFLRWASWFCGP*LVSLSRGLPIFIFP
Trigger: AGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 90 bp TCTTCCCTACTTCCTCCACCACTTTCTGCACAAACTGGTCATGGATaGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGCAGTTCTCCC +
Preference number: 1 (lower is better)
Translates to: SSLLPPPLSAQTGHG*SPPQRAGLPQCSSP
Trigger: GGGAGAACTGCATTGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 90 bp GGCAATAGCAAATCTGTTGAGATGTGGTATGTGGGACCTCCAGAATaGAGAAGGTACAGAGGAGAGGGCCTTGGGCACCCACGGGTGAGT +
Preference number: 1 (lower is better)
Translates to: GNSKSVEMWYVGPPE*RRYRGEGLGHPRVS
Trigger: ACTCACCCGTGGGTGCCCAAGGCCCTCTCCTCTGTACCTTCTTCATTCTGGAGGTCCCACATACCACATCTCAACAGATTTGCTATTGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 90 bp TACTGTAGGTCTTCGCGCCCTCAGCATCCACAAACTCGCCGCCTATaGAGAGCTGGTAGGGCATTTGGAGAGTCAGTTTCTTCACTGCCT +
Preference number: 1 (lower is better)
Translates to: YCRSSRPQHPQTRRL*RAGRAFGESVSSLP
Trigger: AGGCAGTGAAGAAACTGACTCTCCAAATGCCCTACCAGCTCTTCATAGGCGGCGAGTTTGTGGATGCTGAGGGCGCGAAGACCTACAGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 90 bp TTAGCGATGTACATGTGGTCCTCCACGTCTGTGAAAACGGTTGGCTaGAAGAAGAAGCCTGGCCTTGGGACTTGGTTCCCACCACAGACC +
Preference number: 1 (lower is better)
Translates to: LAMYMWSSTSVKTVG*KKKPGLGTWFPPQT
Trigger: GGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 90 bp AGGGGGTTGCCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTaGACAAACTGGTCATGGATGGAGTCCTCCACAAAGAGCCGGCCT +
Preference number: 1 (lower is better)
Translates to: RGLPIFIFPTSSTTF*TNWSWMESSTKSRP
Trigger: AGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 90 bp CCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTGCACAAACTaGTCATGGATGGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATG +
Preference number: 1 (lower is better)
Translates to: PIFIFPTSSTTFCTN*SWMESSTKSRPAAM
Trigger: CATTGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 90 bp CTCCTTAGCGATGTACATGTGGTCCTCCACGTCTGTGAAAACGGTTaGCTGAAAGAAGAAGCCTGGCCTTGGGACTTGGTTCCCACCACA +
Preference number: 1 (lower is better)
Translates to: LLSDVHVVLHVCENG*LKEEAWPWDLVPTT
Trigger: TGTGGTGGGAACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 90 bp GAGAAGTATCACAGTCTTGGCTTCAGTACTCAAAAGTCACAGTCTTaGTCCGCAGGTACTCATTCAGGGCCGCCTCTCCCAGGTCTTTGC +
Preference number: 1 (lower is better)
Translates to: EKYHSLGFSTQKSQS*SAGTHSGPPLPGLC
Trigger: GCAAAGACCTGGGAGAGGCGGCCCTGAATGAGTACCTGCGGATCAAGACTGTGACTTTTGAGTACTGAAGCCAAGACTGTGATACTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 90 bp GCCTATGAAGAGCTGGTAGGGCATTTGGAGAGTCAGTTTCTTCACTaGCTTTTCCACGTAGTTAATGACACACTCGCTCTCGCCGTCCTC +
Preference number: 1 (lower is better)
Translates to: AYEELVGHLESQFLH*LFHVVNDTLALAVL
Trigger: GAGGACGGCGAGAGCGAGTGTGTCATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACTCTCCAAATGCCCTACCAGCTCTTCATAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR TCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTaGAAGGAGCAGTGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: GATSDCSEGVLSPAGVQAKSSSS*KEQCWG
Trigger: TCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTT...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
3UTR-3UTR GCA 90 bp CTGAAATCTTTGCGACTGATCCAGGTCACTGCCTGCCTGGCCAGGGGAGTTAGAGCCTTGCAGGGGCTGTaGTCCAGGCTGGGGTGGTGT +
Preference number: 2 (lower is better)
Translates to: LKSLRLIQVTACLARGVRALQGL*SRLGWC
Trigger: ACACCACCCCAGCCTGGAGCACAGCCCCTGCAAGGC...TCTAACTCCCCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR TCA 90 bp GTGGCCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGAAGAGCTCCAGCAGCTaGAAGGAGCAGTGCTGGGGA +
Preference number: 2 (lower is better)
Translates to: VAPSFTPRWQYSTSFLRWKSSSS*KEQCWG
Trigger: TCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTT...CCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGGCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR TCA 90 bp CAGGGAAATGTCAGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGGCTCAGGACTCATGGTaGCCACTGCCTCTGGTTCCA +
Preference number: 2 (lower is better)
Translates to: QGNVRLGGVPAVDPRLPLAQDSW*PLPLVP
Trigger: TGGAACCAGAGGCAGTGGTCACCATGAGTCCTGAGC...CAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCTGACATTTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR CCA 90 bp TGGCCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGCCAGGGCCTCAATGGTaGCTAGCTCTTCCTGGTGCT +
Preference number: 2 (lower is better)
Translates to: WPLPSHHVGNTPPASSGGPGPQW*LALPGA
Trigger: AGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGG...CCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR GCA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGAGAGAAGGGCAGGGATaGGGAGGAAGTCCGGGATAC +
Preference number: 2 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGREGQG*GGSPGY
Trigger: GTATCCCGGACTTCCTCCGCATCCCTGCCCTTCTCT...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR GCA 90 bp TGGCCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGAGGTCTGGATGGACATaGCCACATGCGTCTTCAGGG +
Preference number: 2 (lower is better)
Translates to: WPLPSHHVGNTPPASSGGRSGWT*PHASSG
Trigger: CCCTGAAGACGCATGTGGGCATGTCCATCCAGACCT...CCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR CCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCTTCCTCACTAGGAGCTaGATGAAGTCCCCGAAGGTG +
Preference number: 2 (lower is better)
Translates to: GATSDCSEGVLSPAGVQAFLTRS*MKSPKV
Trigger: CACCTTCGGGGACTTCATCCAGCTCCTAGTGAGGAA...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp TCCACCAGCTTCCTCAGGTGGGCCTCATGGTTCTGCGGGCCATGGTaGGTATCTCTGTCCAGGGGGTTGCCGATTTTCATCTTCCCTACT +
Preference number: 2 (lower is better)
Translates to: STSFLRWASWFCGPW*VSLSRGLPIFIFPT
Trigger: AGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp TCTGGGGCGCACCCTCTTCCACAGCCTCTTGTACCCATTCTGCTTTaGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCCACTAAGGGG +
Preference number: 2 (lower is better)
Translates to: SGAHPLPQPLVPILL*EVCDVHFLLCPTKG
Trigger: CCCCTTAGTGGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAGGCTGTGGAAGAGGGTGCGCCCCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR TCA 90 bp TTACTCAGGGCACAGCTTTTCATGATGTGTTTTCCCACCTCCGTGGAGCCTGTGCCTGGTGCTGCTCCATaGGGTCCGCCAACCTGTACA +
Preference number: 2 (lower is better)
Translates to: LLRAQLFMMCFPTSVEPVPGAAP*GPPTCT
Trigger: TGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGG...CACAGGCTCCACGGAGGTGGGAAAACACATCATGAAAAGCTGTGCCCTGAGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp GAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGCAGTTCTCCCCTTaGTTGAAGAAAACGGAGCTCATGCCCATCTGCACAGCTTTGTTG +
Preference number: 2 (lower is better)
Translates to: ESSTKSRPAAMQFSP*LKKTELMPICTALL
Trigger: CAACAAAGCTGTGCAGATGGGCATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACTGCATTGCGGCAGGCCGGCTCTTTGTGGAGGACTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp GCCTCATGGTTCTGCGGGCCATGGTTGGTATCTCTGTCCAGGGGGTaGCCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTGCACA +
Preference number: 2 (lower is better)
Translates to: ASWFCGPWLVSLSRG*PIFIFPTSSTTFCT
Trigger: TGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp ATATCCCGAGTGAAGACACCAGAGGCCAGGCCAAATTCTGTAGCATaGGCCCGAGATAGCACTGCATCCACGTCCCCATCAGCAAACCGA +
Preference number: 2 (lower is better)
Translates to: ISRVKTPEARPNSVA*ARDSTASTSPSANR
Trigger: TCGGTTTGCTGATGGGGACGTGGATGCAGTGCTATCTCGGGCCAATGCTACAGAATTTGGCCTGGCCTCTGGTGTCTTCACTCGGGATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR TCA 90 bp CTCCCCAAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGTCTCTGAAGGCCAAGTaGTGCTACATGCTCAGGACT +
Preference number: 2 (lower is better)
Translates to: LPKSHFLFLGRTLFHSLLSLKAK*CYMLRT
Trigger: AGTCCTGAGCATGTAGCATCACTTGGCCTTCAGAGA...CAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTTGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR CCA 90 bp TCATCTTCCCTACTTCCTCCACCACTTTCTGCACAAACTGGTCATGGATGGAGTGTGAGTGGGGTCACCTaGGCAGGCTTGATCACCACG +
Preference number: 2 (lower is better)
Translates to: SSSLLPPPLSAQTGHGWSVSGVT*AGLITT
Trigger: CGTGGTGATCAAGCCTGCCCAGGTGACCCCACTCAC...ACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp AACACAGTGCCCGCCTGCAGTTTGTCACTGACATACAGGGCCTTGTaGATATCCCGAGTGAAGACACCAGAGGCCAGGCCAAATTCTGTA +
Preference number: 2 (lower is better)
Translates to: NTVPACSLSLTYRAL*ISRVKTPEARPNSV
Trigger: TACAGAATTTGGCCTGGCCTCTGGTGTCTTCACTCGGGATATCAACAAGGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCACTGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp ACAAACACAGTGCCCGCCTGCAGTTTGTCACTGACATACAGGGCCTaGTTGATATCCCGAGTGAAGACACCAGAGGCCAGGCCAAATTCT +
Preference number: 2 (lower is better)
Translates to: TNTVPACSLSLTYRA*LISRVKTPEARPNS
Trigger: AGAATTTGGCCTGGCCTCTGGTGTCTTCACTCGGGATATCAACAAGGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCACTGTGTTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp CCAGACTGCTTGAATCCTCCAAAAGGTGCGGCCACATCGGTCTTGTaGTATGTGTTGACAAACACAGTGCCCGCCTGCAGTTTGTCACTG +
Preference number: 2 (lower is better)
Translates to: PDCLNPPKGAATSVL*YVLTNTVPACSLSL
Trigger: CAGTGACAAACTGCAGGCGGGCACTGTGTTTGTCAACACATACAACAAGACCGATGTGGCCGCACCTTTTGGAGGATTCAAGCAGTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR TCA 90 bp CCGAAGGACTCCTCCTTAGCGATGTACATGTGGTCCTCCACGTCTGTGAAAACGAAAGATGATAAGGGGTaGCTTTCCACCCAGCTCCAG +
Preference number: 2 (lower is better)
Translates to: PKDSSLAMYMWSSTSVKTKDDKG*LSTQLQ
Trigger: CTGGAGCTGGGTGGAAAGTCACCCCTTATCATCTTT...CGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAAGGAGGAGTCCTTCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR GCA 90 bp GCCTCTCCCAGGTCTTTGCCAAATCCAGACTGCTTGAATCCTCCAAAAGGTGCGGAGCTCATGCCCATCTaGACAGCTTTGTTGAGGTCA +
Preference number: 2 (lower is better)
Translates to: ASPRSLPNPDCLNPPKGAELMPI*TALLRS
Trigger: TGACCTCAACAAAGCTGTGCAGATGGGCATGAGCTC...CGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 90 bp AAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTaGTACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCC +
Preference number: 2 (lower is better)
Translates to: KSHFLFLGRTLFHSL*YPFCFWRCVMCISS
Trigger: GGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CAA 90 bp GGAGAAGTATCACAGTCTTGGCTTCAGTACTCAAAAGTCACAGTCTaGATCCGCAGGTACTCATTCAGGGCCGCCTCTCCCAGGTCTTTG +
Preference number: 2 (lower is better)
Translates to: GEVSQSWLQYSKVTV*IRRYSFRAASPRSL
Trigger: CAAAGACCTGGGAGAGGCGGCCCTGAATGAGTACCTGCGGATCAAGACTGTGACTTTTGAGTACTGAAGCCAAGACTGTGATACTTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR CCA 90 bp CCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCATCAGCCTTTAAAGAATTTTaGACCAAGAGAGGCAGAGCC +
Preference number: 2 (lower is better)
Translates to: PPSFLFQQPCGGVYTAPSAFKEF*TKRGRA
Trigger: GGCTCTGCCTCTCTTGGTCCAAAATTCTTTAAAGGC...TGATGGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTaGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAG +
Preference number: 2 (lower is better)
Translates to: LLTIFIHGGHDCSLH*EPLLIVQRVSCHQQ
Trigger: CTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
3UTR CAA 90 bp CAGCACTCCCTGAGGTCAACAGGGTACAGGAGAAGTATCACAGTCTaGGCTTCAGTACTCAAAAGTCACAGTCTTGATCCGCAGGTACTC +
Preference number: 2 (lower is better)
Translates to: QHSLRSTGYRRSITV*ASVLKSHSLDPQVL
Trigger: GAGTACCTGCGGATCAAGACTGTGACTTTTGAGTACTGAAGCCAAGACTGTGATACTTCTCCTGTACCCTGTTGACCTCAGGGAGTGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR GCA 90 bp TACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCCACTAACTCATGGTGACCACTaGCTCTGGTTCCATACGAGG +
Preference number: 2 (lower is better)
Translates to: YPFCFWRCVMCISSCVPLTHGDH*LWFHTR
Trigger: CCTCGTATGGAACCAGAGGCAGTGGTCACCATGAGT...TAGTGGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CAA 90 bp CTCAGCATCCACAAACTCGCCGCCTATGAAGAGCTGGTAGGGCATTaGGAGAGTCAGTTTCTTCACTGCCTTTTCCACGTAGTTAATGAC +
Preference number: 2 (lower is better)
Translates to: LSIHKLAAYEELVGH*ESQFLHCLFHVVND
Trigger: GTCATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACTCTCCAAATGCCCTACCAGCTCTTCATAGGCGGCGAGTTTGTGGATGCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR GCA 90 bp AAGAACAGAAAGGCCTTTAAAGAATTTTGGACCAAGAGAGGCAGAGCCAAAGAACAGAGGAGACTGGGGTaGTTGATGGCCCAAGGCTCA +
Preference number: 2 (lower is better)
Translates to: KNRKAFKEFWTKRGRAKEQRRLG*LMAQGS
Trigger: TGAGCCTTGGGCCATCAAGCACCCCAGTCTCCTCTG...TTCTTTGGCTCTGCCTCTCTTGGTCCAAAATTCTTTAAAGGCCTTTCTGTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR GCA 90 bp TTACTCAGGGCACAGCTTTTCATGATGTGTTTTCCCACCTCCGTGGAGCCTGTGAGTCAGTTTCTTCACTaGCTTTTCCACGTAGTTAAT +
Preference number: 2 (lower is better)
Translates to: LLRAQLFMMCFPTSVEPVSQFLH*LFHVVN
Trigger: ATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACT...CACAGGCTCCACGGAGGTGGGAAAACACATCATGAAAAGCTGTGCCCTGAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp GTACAGAGGAGAGGGCCTTGGGCACCCACGGGTGAGTaGATAGGAGTCAGAAGCCTTGCAGGGGCTGTGCTC +
Preference number: 3 (lower is better)
Translates to: VQRRGPWAPTGE*IGVRSLAGAVL
Trigger: GAGCACAGCCCCTGCAAGGCTTCTGACTCCTATGCACTCACCCGTGGGTGCCCAAGGCCCTCTCCTCTGTAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR GCA 72 bp TCCAGGGCCTCAATGGTGGCTAGCTCTTCCTGGTGCTaGTCCATGAGGTCCGCCAACCTGTACAGGAGCCGG +
Preference number: 3 (lower is better)
Translates to: SRASMVASSSWC*SMRSANLYRSR
Trigger: CCGGCTCCTGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp GCGTCCAGGGCCTCAATGGTGGCTAGCTCTTCCTGGTaGTGCTCCATGAGGTCCGCCAACCTGTACAGGAGC +
Preference number: 3 (lower is better)
Translates to: ASRASMVASSSW*CSMRSANLYRS
Trigger: GCTCCTGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 72 bp AGACCCCAGGCTACCATTGTGGCTGTCCAAGTCCACTaGGTGAGAACCCGGGTCCTGGCAGAGGAGACTGGG +
Preference number: 3 (lower is better)
Translates to: RPQATIVAVQVH*VRTRVLAEETG
Trigger: CCCAGTCTCCTCTGCCAGGACCCGGGTTCTCACTCAGTGGACTTGGACAGCCACAATGGTAGCCTGGGGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp GAAGGTACAGAGGAGAGGGCCTTGGGCACCCACGGGTaGGTGCATAGGAGTCAGAAGCCTTGCAGGGGCTGT +
Preference number: 3 (lower is better)
Translates to: EGTEERALGTHG*VHRSQKPCRGC
Trigger: ACAGCCCCTGCAAGGCTTCTGACTCCTATGCACTCACCCGTGGGTGCCCAAGGCCCTCTCCTCTGTACCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR-3UTR CAA 90 bp CCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGCCTTTCTGCGGGCCATGGTaGGTATCTCTGTCCAGGGGG +
Preference number: 3 (lower is better)
Translates to: PLPSHHVGNTPPASSGGPFCGPW*VSLSRG
Trigger: CCCCCTGGACAGAGATACCAACCATGGCCCGCAGAA...AGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR CAA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGGCCTGGCCTTGGGACTaGGTTCCCACCACAGACCAG +
Preference number: 3 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGAWPWD*VPTTDQ
Trigger: CTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGGC...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp TACTCCACCAGCTTCCTCAGGTGGGCCTCATGGTTCTaGGGGCCATGGTTGGTATCTCTGTCCAGGGGGTTG +
Preference number: 3 (lower is better)
Translates to: YSTSFLRWASWF*GPWLVSLSRGL
Trigger: CAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGAGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp CACACCCTTGGGAATGCCAGCCTTCAGTGTCAGCTCTaGAAACTTCAAGGCTGTGAGTGGGGTCACCTGGGC +
Preference number: 3 (lower is better)
Translates to: HTLGNASLQCQL*KLQGCEWGHLG
Trigger: GCCCAGGTGACCCCACTCACAGCCTTGAAGTTTGCAGAGCTGACACTGAAGGCTGGCATTCCCAAGGGTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp AGGGCCGCCTCTCCCAGGTCTTTGCCAAATCCAGACTaGTTGAATCCTCCAAAAGGTGCGGCCACATCGGTC +
Preference number: 3 (lower is better)
Translates to: RAASPRSLPNPD*LNPPKGAATSV
Trigger: GACCGATGTGGCCGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGCGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 72 bp AGATGGGAGTGCTGTCCAGGGAAATGTCAGGCTGGGTaGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTG +
Preference number: 3 (lower is better)
Translates to: RWECCPGKCQAG*SPCCRPQATIV
Trigger: CACAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCTGACATTTCCCTGGACAGCACTCCCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 72 bp TGGCAATACTCCACCAGCTTCCTCAGGTGGGCCTCATaGTTCTGCGGGCCATGGTTGGTATCTCTGTCCAGG +
Preference number: 3 (lower is better)
Translates to: WQYSTSFLRWAS*FCGPWLVSLSR
Trigger: CCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 72 bp GCCTGTGAACCCTATTTTCCTCACATCAGGGTGGTCTaGGAGTCTCTGGCCAACCAGCGAGCCAGATCCTGG +
Preference number: 3 (lower is better)
Translates to: ACEPYFPHIRVV*ESLANQRARSW
Trigger: CCAGGATCTGGCTCGCTGGTTGGCCAGAGACTCTCAGACCACCCTGATGTGAGGAAAATAGGGTTCACAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp CTTTCCCCACAGTCCATTCTCAAAGGCCTCCTTCGCTaGTGCCACCGCCTTGTCAACATCACTCACCTGAGC +
Preference number: 3 (lower is better)
Translates to: LSPQSILKGLLR*CHRLVNITHLS
Trigger: GCTCAGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATGGACTGTGGGGAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CCA 72 bp ACCTCCAGAATGAAGAAGGTACAGAGGAGAGGGCCTTaGGCACCCACGGGTGAGTGCATAGGAGTCAGAAGC +
Preference number: 3 (lower is better)
Translates to: TSRMKKVQRRGP*APTGECIGVRS
Trigger: GCTTCTGACTCCTATGCACTCACCCGTGGGTGCCCAAGGCCCTCTCCTCTGTACCTTCTTCATTCTGGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 72 bp CTTCCTCCACCACTTTCTGCACAAACTGGTCATGGATaGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGC +
Preference number: 3 (lower is better)
Translates to: LPPPLSAQTGHG*SPPQRAGLPQC
Trigger: GCATTGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR-3UTR CAA 90 bp GTGAAGACACCAGAGGCCAGGCCAAATTCTGTAGCATTGGCCCGAGATAGCACTTTGGTCAAGGTCAGGTaGCGGTTGGGTCTAGCCTGG +
Preference number: 3 (lower is better)
Translates to: VKTPEARPNSVALARDSTLVKVR*RLGLAW
Trigger: CCAGGCTAGACCCAACCGCAACCTGACCTTGACCAA...AGTGCTATCTCGGGCCAATGCTACAGAATTTGGCCTGGCCTCTGGTGTCTTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp GGCCTGAAATCTTTGCGACTGATCCAGGTCACTGCCTaGCTGGCCAGGGGAGTTAGAGAAGAACAGAAAGGC +
Preference number: 3 (lower is better)
Translates to: GLKSLRLIQVTA*LARGVREEQKG
Trigger: GCCTTTCTGTTCTTCTCTAACTCCCCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR GCA 72 bp CTGAGGCATGTGCCCCACTTAAGAGAAGGGCAGGGATaGGGAGGAAGTCCGGGATACTACATAGGCCTGAAA +
Preference number: 3 (lower is better)
Translates to: LRHVPHLREGQG*GGSPGYYIGLK
Trigger: TTTCAGGCCTATGTAGTATCCCGGACTTCCTCCGCATCCCTGCCCTTCTCTTAAGTGGGGCACATGCCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp GAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTaGGGTCAACAGGGTACAGGAGAAGTATCACAGTCT +
Preference number: 3 (lower is better)
Translates to: EGAKSPDRVSTP*GQQGTGEVSQS
Trigger: AGACTGTGATACTTCTCCTGTACCCTGTTGACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
3UTR TCA 72 bp TCTTCGCGCCCTCAGCATCCACAAACTCGCCGCCTATaGAGAGCTGGTAGGGCATTTGGAGAGTCAGTTTCT +
Preference number: 3 (lower is better)
Translates to: SSRPQHPQTRRL*RAGRAFGESVS
Trigger: AGAAACTGACTCTCCAAATGCCCTACCAGCTCTTCATAGGCGGCGAGTTTGTGGATGCTGAGGGCGCGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp TCTGCGGGCCATGGTTGGTATCTCTGTCCAGGGGGTTaGCGATTTTCATCTTCCCTACTTCCTCCACCACTT +
Preference number: 3 (lower is better)
Translates to: SAGHGWYLCPGG*RFSSSLLPPPL
Trigger: AAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR TCA 72 bp GAAGGCCAAGTGATGCTACATGCTCAGGACTCATGGTaGCCACTGCCTCTGGTTCCATACGAGGCATCCATA +
Preference number: 3 (lower is better)
Translates to: EGQVMLHAQDSW*PLPLVPYEASI
Trigger: TATGGATGCCTCGTATGGAACCAGAGGCAGTGGTCACCATGAGTCCTGAGCATGTAGCATCACTTGGCCTTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp ATTTCCTCCTGTGTCCCACTAAGGGGTCTCGTTCTCTaGAGGCCAAGTGATGCTACATGCTCAGGACTCATG +
Preference number: 3 (lower is better)
Translates to: ISSCVPLRGLVL*RPSDATCSGLM
Trigger: CATGAGTCCTGAGCATGTAGCATCACTTGGCCTTCAGAGAACGAGACCCCTTAGTGGGACACAGGAGGAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp AAATCTGTTGAGATGTGGTATGTGGGACCTCCAGAATaGAGAAGGTACAGAGGAGAGGGCCTTGGGCACCCA +
Preference number: 3 (lower is better)
Translates to: KSVEMWYVGPPE*RRYRGEGLGHP
Trigger: TGGGTGCCCAAGGCCCTCTCCTCTGTACCTTCTTCATTCTGGAGGTCCCACATACCACATCTCAACAGATTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp CACTTAGTGGACACATGGCCAGTGACAGTGTCACTGTaGCCACCCAGTTTCCTATTCCAACAGCCATGTGGT +
Preference number: 3 (lower is better)
Translates to: HLVDTWPVTVSL*PPSFLFQQPCG
Trigger: ACCACATGGCTGTTGGAATAGGAAACTGGGTGGTCACAGTGACACTGTCACTGGCCATGTGTCCACTAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 72 bp GATGTACATGTGGTCCTCCACGTCTGTGAAAACGGTTaGCTGAAAGAAGAAGCCTGGCCTTGGGACTTGGTT +
Preference number: 3 (lower is better)
Translates to: DVHVVLHVCENG*LKEEAWPWDLV
Trigger: AACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACCACATGTACATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp CTCTTGTACCCATTCTGCTTTTGGAGGTGTGTGATGTaGATTTCCTCCTGTGTCCCACTAAGGGGTCTCGTT +
Preference number: 3 (lower is better)
Translates to: LLYPFCFWRCVM*ISSCVPLRGLV
Trigger: AACGAGACCCCTTAGTGGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 72 bp CCAAGAGAGGCAGAGCCAAAGAAAGGTGGTAGTGGTTaGCATGCCAAGAAGAGAATGTTGGGTAAACCAAGG +
Preference number: 3 (lower is better)
Translates to: PREAEPKKGGSG*HAKKRMLGKPR
Trigger: CCTTGGTTTACCCAACATTCTCTTCTTGGCATGCCAACCACTACCACCTTTCTTTGGCTCTGCCTCTCTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR TCA 72 bp GCGACCTCTGCTCACAATTTTTATTCATGGGGGACATaGCTGCTCACTCCACTTGGAGCCACTTCTGATTGT +
Preference number: 3 (lower is better)
Translates to: ATSAHNFYSWGT*LLTPLGATSDC
Trigger: ACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR GCA 72 bp CCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTaGACAAACTGGTCATGGATGGAGTCCTCCACAAAG +
Preference number: 3 (lower is better)
Translates to: PIFIFPTSSTTF*TNWSWMESSTK
Trigger: CTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR GCA 72 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTaGTCACTCCACTTGGAGCCACTTCTGATTGTTCAG +
Preference number: 3 (lower is better)
Translates to: PLLTIFIHGGHD*SLHLEPLLIVQ
Trigger: CTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CCA 72 bp TGGTGTAAGATAAAAAGAAATGCAGATGGTAGAAGATaGGAGTGCTGTCCAGGGAAATGTCAGGCTGGGTGG +
Preference number: 3 (lower is better)
Translates to: WCKIKRNADGRR*ECCPGKCQAGW
Trigger: CCACCCAGCCTGACATTTCCCTGGACAGCACTCCCATCTTCTACCATCTGCATTTCTTTTTATCTTACACCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR GCA 72 bp ATAGACAGAGCAGTGACACAAAGTGTAGGCGACCTCTaGTCACAATTTTTATTCATGGGGGACATGACTGCT +
Preference number: 3 (lower is better)
Translates to: IDRAVTQSVGDL*SQFLFMGDMTA
Trigger: AGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCCTACACTTTGTGTCACTGCTCTGTCTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CCA 72 bp CTCAGATTTGCTACTCTGGAATCAATATTAGGTATGTaGCTTCTCACTGACGAAAATGTTACTCTGAGGCAT +
Preference number: 3 (lower is better)
Translates to: LRFATLESILGM*LLTDENVTLRH
Trigger: ATGCCTCAGAGTAACATTTTCGTCAGTGAGAAGCCACATACCTAATATTGATTCCAGAGTAGCAAATCTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCGCTCCGCACGGCCTCTaGTGTGGCCAGCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSAPHGL*CGQLLL
Trigger: GAGGAGGAGCTGGCCACAGCAGAGGCCGTGCGGAGC...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGCCTGCTCCGCACGGCCTCTaGTGTGGCCAGCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: PLPSHHVGNTPPASSGGPAPHGL*CGQLLL
Trigger: GAGGAGGAGCTGGCCACAGCAGAGGCCGTGCGGAGC...AGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCGGTCCAGTTGATGGCTaGGGCCCCTCGGTGCCTGGG +
Preference number: 4 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSGPVDG*GPSVPG
Trigger: CCCAGGCACCGAGGGGCCTCAGCCATCAACTGGACC...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTGCTGAGGCCCCTCGGTaGCTGGGCAGCAGAGATGGA +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSAEAPR*LGSRDG
Trigger: TCCATCTCTGCTGCCCAGGCACCGAGGGGCCTCAGC...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGACGGCGTGGGGCTGTaGCCTCTGCAATCAGTCGCA +
Preference number: 4 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSDGVGL*PLQSVA
Trigger: TGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTC...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCGCTCCGCACGGCCTCTaGTGTGGCCAGCTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSAPHGL*CGQLLL
Trigger: GAGGAGGAGCTGGCCACAGCAGAGGCCGTGCGGAGC...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCGTGAGTGGGGTCACCTaGGCAGGCTTGATCACCACG +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSVSGVT*AGLITT
Trigger: CGTGGTGATCAAGCCTGCCCAGGTGACCCCACTCAC...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGCCTGGCCTTGGGACTTaGTTCCCACCACAGACCAGT +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGPGLGT*FPPQTS
Trigger: ACTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGG...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCGGTAGAGCTTCTCCCTaGGCCACCAGTCCTGAAGTG +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSGRASP*ATSPEV
Trigger: CACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACC...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGCCTGGTGCTGCTCCATaGGGTCCGCCAACCTGTACA +
Preference number: 4 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEPGAAP*GPPTCT
Trigger: TGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGG...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp AGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTGGCTGTCCAAGCCTGGTGCTGCTCCATaGGGTCCGCCAACCTGTACA +
Preference number: 4 (lower is better)
Translates to: RLGGVPAVDPRLPLWLSKPGAAP*GPPTCT
Trigger: TGTACAGGTTGGCGGACCTCATGGAGCAGCACCAGG...CTTGGACAGCCACAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTCCCCAAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGGCTGAGGCCCCTCGGTaGCTGGGCAGCAGAGATGGA +
Preference number: 4 (lower is better)
Translates to: LPKSHFLFLGRTLFHSLLAEAPR*LGSRDG
Trigger: TCCATCTCTGCTGCCCAGGCACCGAGGGGCCTCAGC...CAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TCCCCACAGTCCATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACGACGGCGTGGGGCTGTaGCCTCTGCAATCAGTCGCA +
Preference number: 4 (lower is better)
Translates to: SPQSILKGLLRCCHRLVNDGVGL*PLQSVA
Trigger: TGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTC...GTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATGGACTGTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGGCCCCTCGGTGCCTaGGCAGCAGAGATGGATGGT +
Preference number: 4 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSRPLGA*AAEMDG
Trigger: ACCATCCATCTCTGCTGCCCAGGCACCGAGGGGCCT...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCTCTGTCCAGGCACCTaGCACCTTGTCATTCCCACG +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVLCPGT*HLVIPT
Trigger: CGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGAG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCGATGGGCTCCTGGGATaGGTAGAGCTTCTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSDGLLG*VELLPE
Trigger: CTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATC...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGGCACGGCCTCTGCTGTaGCCAGCTCCTCCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGARPLL*PAPPRS
Trigger: TGACCGAGGAGGAGCTGGCCACAGCAGAGGCCGTGC...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCTTCAAGGCTGTGAGTaGGGTCACCTGGGCAGGCTT +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVLQGCE*GHLGRL
Trigger: AAGCCTGCCCAGGTGACCCCACTCACAGCCTTGAAG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCCTTGTCTGGGATGGTaGACACACCCACCACCTCAT +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVPCLGW*THPPPH
Trigger: ATGAGGTGGTGGGTGTGTTCACCATCCCAGACAAGG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCCTGAACCATCCCTTTaGTGCCCTCTGGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVPEPSL*CPLGRG
Trigger: TCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGCTGGCTGGTCCCAGTTaGTCATGGCTGTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGLAGPS*SWLSPF
Trigger: AAAAGGAGACAGCCATGATCAACTGGGACCAGCCAG...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCGGTAGAGCTTCTCCCTaGGCCACCAGTCCTGAAGTG +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQAGRASP*ATSPEV
Trigger: CACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACC...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGCAGGCCCAGGGGATCTaGTTTCCCATCCTTGTCTGG +
Preference number: 4 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEQAQGI*FPILVW
Trigger: CCAGACAAGGATGGGAAAGCAGATCCCCTGGGCCTG...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGCCTCATGCTGAGGCCCCTCGGTaGCTGGGCAGCAGAGATGGA +
Preference number: 4 (lower is better)
Translates to: LPSHHVGNTPPASSGGPHAEAPR*LGSRDG
Trigger: TCCATCTCTGCTGCCCAGGCACCGAGGGGCCTCAGC...ATGAGGCCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCGCTAGCTCTTCCTGGTaGTGCTCCATGAGGTCCGCC +
Preference number: 4 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSASSSW*CSMRSA
Trigger: GGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGC...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGGTCTGGATGGACATaGCCACATGCGTCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERRSGWT*PHASSG
Trigger: CCCTGAAGACGCATGTGGGCATGTCCATCCAGACCT...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGCCTGGGCAGCAGAGATaGATGGTAGATGATGGAGCC +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERPGQQR*MVDDGA
Trigger: GGCTCCATCATCTACCATCCATCTCTGCTGCCCAGG...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGGCTCACGGTGTCATCTaGAAGCACGTCACACTCCTT +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGAHGVI*KHVTLL
Trigger: AAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGC...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACATCACTCACCTGCACGGCCTCTGCTGTaGCCAGCTCCTCCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: HSQRPPSLLPPPCQHHSPARPLL*PAPPRS
Trigger: TGACCGAGGAGGAGCTGGCCACAGCAGAGGCCGTGC...AGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTCGTCCAGGGCCTCAATaGTGGCTAGCTCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSRPGPQ*WLALPG
Trigger: ACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACG...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCCGGTTGGGTCTAGCCTaGTTGATGGGGATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQARLGLA*LMGMVA
Trigger: TGCCACCATCCCCATCAACCAGGCTAGACCCAACCG...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GACCAAGAGAGGCAGAGCCAAAGAAAGGTGGTAGTGGTTGGCATGCCAAGAAGAGGTCCAGTTGATGGCTaGGGCCCCTCGGTGCCTGGG +
Preference number: 4 (lower is better)
Translates to: DQERQSQRKVVVVGMPRRGPVDG*GPSVPG
Trigger: CCCAGGCACCGAGGGGCCTCAGCCATCAACTGGACC...TCTTCTTGGCATGCCAACCACTACCACCTTTCTTTGGCTCTGCCTCTCTTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCTGGCTGGTCCCAGTTaGTCATGGCTGTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVLAGPS*SWLSPF
Trigger: AAAAGGAGACAGCCATGATCAACTGGGACCAGCCAG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCCCACGGATCCAGTTGTaGATGGCCTCTGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSPRIQL*MASAGW
Trigger: CCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGG...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCCTCCGTGGAGCCTGTaGACCCTATTTTCCTCACAT +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVPPWSL*TLFSSH
Trigger: ATGTGAGGAAAATAGGGTTCACAGGCTCCACGGAGG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGACGTCACACTCCTTCTaGAGCAGAAGGTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERTSHSF*SRRSPV
Trigger: CACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGT...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCGGCCTCCTTCGCTGCTaGCACCGCCTTGTCAACATC +
Preference number: 4 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSGLLRC*HRLVNI
Trigger: GATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCC...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAGGTCTGGATGGACATaGCCACATGCGTCTTCAGGG +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQARSGWT*PHASSG
Trigger: CCCTGAAGACGCATGTGGGCATGTCCATCCAGACCT...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp AGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTGGCTGTCCAAGCCACACCCTTGGGAATaGCAGCCTTCAGTGTCAGCT +
Preference number: 4 (lower is better)
Translates to: RLGGVPAVDPRLPLWLSKPHPWE*QPSVSA
Trigger: AGCTGACACTGAAGGCTGGCATTCCCAAGGGTGTGG...CTTGGACAGCCACAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGAACACAGTGCCCGCCTaGAGTTTGTCACTGACATAC +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGNTVPA*SLSLTY
Trigger: GTATGTCAGTGACAAACTGCAGGCGGGCACTGTGTT...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTCTCTGTCCAGGCACCTaGCACCTTGTCATTCCCACG +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSLCPGT*HLVIPT
Trigger: CGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGAG...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TCCCCACAGTCCATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACGATGGGCTCCTGGGATaGGTAGAGCTTCTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: SPQSILKGLLRCCHRLVNDGLLG*VELLPE
Trigger: CTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATC...GTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATGGACTGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGTTCCTCACTAGGAGCTaGATGAAGTCCCCGAAGGTG +
Preference number: 4 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVFLTRS*MKSPKV
Trigger: CACCTTCGGGGACTTCATCCAGCTCCTAGTGAGGAA...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCTTCCTCACTAGGAGCTaGATGAAGTCCCCGAAGGTG +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVFLTRS*MKSPKV
Trigger: CACCTTCGGGGACTTCATCCAGCTCCTAGTGAGGAA...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CAGGGAAATGTCAGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGCCAGGGCCTCAATGGTaGCTAGCTCTTCCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QGNVRLGGVPAVDPRLPLPGPQW*LALPGA
Trigger: AGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGG...CAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCTGACATTTCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTCCTGGCCTTGGGACTTaGTTCCCACCACAGACCAGT +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSPGLGT*FPPQTS
Trigger: ACTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGG...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CAGGGAAATGTCAGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGCCTGAACCATCCCTTTaGTGCCCTCTGGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: QGNVRLGGVPAVDPRLPLPEPSL*CPLGRG
Trigger: TCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGG...CAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCTGACATTTCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTATCAGTCGCACAGCCTaGACCATCCCTTTGATGCCC +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSISRTA*TIPLMP
Trigger: GGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGAT...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GTGACCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCGGTAGAGCTTCTCCCTaGGCCACCAGTCCTGAAGTG +
Preference number: 4 (lower is better)
Translates to: VTTQFPIPTAMWWGLHGPGRASP*ATSPEV
Trigger: CACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACC...GGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGGTCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAATCCTGGGAGGATGTTaGCCACACCCTTGGGAATGC +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPILGGC*PHPWEC
Trigger: GCATTCCCAAGGGTGTGGTCAACATCCTCCCAGGAT...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGGGCACAGCTTTTCATaGTGTGTTTTCCCACCTCCG +
Preference number: 4 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSGHSFS*CVFPPP
Trigger: CGGAGGTGGGAAAACACATCATGAAAAGCTGTGCCC...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGCAAATCCAGACTGCTTaGATCCTCCAAAAGGTGCGG +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERQIQTA*ILQKVR
Trigger: CCGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTG...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGACGGCGTGGGGCTGTaGCCTCTGCAATCAGTCGCA +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPDGVGL*PLQSVA
Trigger: TGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGGAGCTCATGCCCATCTaGACAGCTTTGTTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVELMPI*TALLRS
Trigger: TGACCTCAACAAAGCTGTGCAGATGGGCATGAGCTC...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAACACAGTGCCCGCCTaGAGTTTGTCACTGACATAC +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERNTVPA*SLSLTY
Trigger: GTATGTCAGTGACAAACTGCAGGCGGGCACTGTGTT...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCTTTCCCATCCTTGTCTaGGATGGTGAACACACCCAC +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSFPILV*DGEHTH
Trigger: GTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAA...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGAGGCCCCTCGGTGCCTaGGCAGCAGAGATGGATGGT +
Preference number: 4 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQRPLGA*AAEMDG
Trigger: ACCATCCATCTCTGCTGCCCAGGCACCGAGGGGCCT...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGTCCCCTTTGATGCCCTCTaGGAAGAGGAAACGGTTGTA +
Preference number: 4 (lower is better)
Translates to: AGDRRVLSHQTGSALPEVPFDAL*EEETVV
Trigger: TACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGG...GACCTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCCCCTTTGATGCCCTCTaGGAAGAGGAAACGGTTGTA +
Preference number: 4 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSPFDAL*EEETVV
Trigger: TACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGG...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCCTCTGTCCAGGCACCTaGCACCTTGTCATTCCCACG +
Preference number: 4 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSLCPGT*HLVIPT
Trigger: CGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGAG...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCGATGGGCTCCTGGGATaGGTAGAGCTTCTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSDGLLG*VELLPE
Trigger: CTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATC...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGACTAGGCCTGGACGATaGGCTCCTGGGATGGGTAGA +
Preference number: 4 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGTRPGR*APGMGR
Trigger: TCTACCCATCCCAGGAGCCCATCGTCCAGGCCTAGT...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGACCCCTTGAAGAACTaGGAGGCTGGCATCATCTTG +
Preference number: 4 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSDPLKN*EAGIIL
Trigger: CAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTC...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGAGAGTCTTCTACCTCTaGGACATTGGGCAGAATTCG +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGRVFYL*DIGQNS
Trigger: CGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCT...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GTGACCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCCTTCAAGGCTGTGAGTaGGGTCACCTGGGCAGGCTT +
Preference number: 4 (lower is better)
Translates to: VTTQFPIPTAMWWGLHGPLQGCE*GHLGRL
Trigger: AAGCCTGCCCAGGTGACCCCACTCACAGCCTTGAAG...GGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTACGGATGCAGCTCCTaGCTTGAAGAAATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGYGCSS*LEEICR
Trigger: TCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTA...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGATAGTTCCAGGGGATaGCAATACCACAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEDSSRG*QYHRPQ
Trigger: TTGGGGTCTGTGGTATTGTCATCCCCTGGAACTATC...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCGATAGTTCCAGGGGATaGCAATACCACAGACCCCAA +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQADSSRG*QYHRPQ
Trigger: TTGGGGTCTGTGGTATTGTCATCCCCTGGAACTATC...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCATCCTGGGAGGATGTTaGCCACACCCTTGGGAATGC +
Preference number: 4 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSILGGC*PHPWEC
Trigger: GCATTCCCAAGGGTGTGGTCAACATCCTCCCAGGAT...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGGTCCTCCACGTCTGTaGAAACGGTTGGCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPGPPRL*KRLAER
Trigger: TCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACC...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGTTGTGAATGGCCTCTaGTGGCTGGTCCCAGTTGAT +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPVVNGL*WLVPVD
Trigger: ATCAACTGGGACCAGCCAGCAGAGGCCATTCACAAC...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCTAGCTCTTCCTGGTaGTGCTCCATGAGGTCCGCC +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPASSSW*CSMRSA
Trigger: GGCGGACCTCATGGAGCAGCACCAGGAAGAGCTAGC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGCGTGTAGACGGCACCTaGGTCCAGGGCCTCAATGGT +
Preference number: 4 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRRVDGT*VQGLNG
Trigger: ACCATTGAGGCCCTGGACGCAGGTGCCGTCTACACG...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCGTGTAGACGGCACCTaGGTCCAGGGCCTCAATGGT +
Preference number: 4 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQRVDGT*VQGLNG
Trigger: ACCATTGAGGCCCTGGACGCAGGTGCCGTCTACACG...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGCCACACCCTTGGGAATaGCAGCCTTCAGTGTCAGCT +
Preference number: 4 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGPHPWE*QPSVSA
Trigger: AGCTGACACTGAAGGCTGGCATTCCCAAGGGTGTGG...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGTCCTCCACCACTTTCTaGACAAACTGGTCATGGATG +
Preference number: 4 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVSSTTF*TNWSWM
Trigger: CATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGA...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp AGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTGGCTGTCCAAGGAATCCTCCAAAAGGTaGGGCCACATCGGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: RLGGVPAVDPRLPLWLSKESSKR*GHIGLV
Trigger: AACAAGACCGATGTGGCCGCACCTTTTGGAGGATTC...CTTGGACAGCCACAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp AGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTGGCTGTCCAAGTTTCCCATCCTTGTCTaGGATGGTGAACACACCCAC +
Preference number: 4 (lower is better)
Translates to: RLGGVPAVDPRLPLWLSKFPILV*DGEHTH
Trigger: GTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAA...CTTGGACAGCCACAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTCCCCAAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGCCTGGGCAGCAGAGATaGATGGTAGATGATGGAGCC +
Preference number: 4 (lower is better)
Translates to: LPKSHFLFLGRTLFHSLLPGQQR*MVDDGA
Trigger: GGCTCCATCATCTACCATCCATCTCTGCTGCCCAGG...CAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTTGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp TTCTGCACAAACTGGTCATGGATGGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGGCCTCTGCTGGCTaGTCCCAGTTGATCATGGCT +
Preference number: 4 (lower is better)
Translates to: FCTNWSWMESSTKSRPAAMASAG*SQLIMA
Trigger: AGCCATGATCAACTGGGACCAGCCAGCAGAGGCCAT...TGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGTGAATGGCCTCTGCTaGCTGGTCCCAGTTGATCAT +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPVNGLC*LVPVDH
Trigger: ATGATCAACTGGGACCAGCCAGCAGAGGCCATTCAC...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACATCACTCACCTGGATCCAGTTGTGAATaGCCTCTGCTGGCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: HSQRPPSLLPPPCQHHSPGSSCE*PLLAGP
Trigger: GGGACCAGCCAGCAGAGGCCATTCACAACTGGATCC...AGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGACCCCTTGAAGAACTaGGAGGCTGGCATCATCTTG +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPDPLKN*EAGIIL
Trigger: CAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTC...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGAAGTATCGGAAGGTCTaGATGGACATGCCCACATGC +
Preference number: 4 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEKYRKV*MDMPTC
Trigger: GCATGTGGGCATGTCCATCCAGACCTTCCGATACTT...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCAAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGTACCCGGTTGGGTCTAGCCTaGTTGATGGGGATGGTGGCA +
Preference number: 4 (lower is better)
Translates to: PSLISCFWGAPSSTASCTRLGLA*LMGMVA
Trigger: TGCCACCATCCCCATCAACCAGGCTAGACCCAACCG...GGTACAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGTGAGTGGGGTCACCTaGGCAGGCTTGATCACCACG +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPVSGVT*AGLITT
Trigger: CGTGGTGATCAAGCCTGCCCAGGTGACCCCACTCAC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTTTCCTCACATCAGGGTaGTCTGAGAGTCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSFLTSG*SESLWP
Trigger: TGGCCAGAGACTCTCAGACCACCCTGATGTGAGGAA...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGACTTTCTGCACAAACTaGTCATGGATGGAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERTFCTN*SWMESS
Trigger: GGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGT...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp GGAGGAAGTCCGGGATACTACATAGGCCTGAAATCTTaGCGACTGATCCAGGTCACTGCCTGCCTGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GGSPGYYIGLKS*RLIQVTACLAR
Trigger: CCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAGGCCTATGTAGTATCCCGGACTTCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CAA 72 bp TTCCTCAGGTGGGCCTCATGGTTCTGCGGGCCATGGTaGGTATCTCTGTCCAGGGGGTTGCCGATTTTCATC +
Preference number: 4 (lower is better)
Translates to: FLRWASWFCGPW*VSLSRGLPIFI
Trigger: GATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAACCATGAGGCCCACCTGAGGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 72 bp GTGCCCGCCTGCAGTTTGTCACTGACATACAGGGCCTaGTTGATATCCCGAGTGAAGACACCAGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: VPACSLSLTYRA*LISRVKTPEAR
Trigger: CCTGGCCTCTGGTGTCTTCACTCGGGATATCAACAAGGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 72 bp GCCGCCTCTCCCAGGTCTTTGCCAAATCCAGACTGCTaGAATCCTCCAAAAGGTGCGGCCACATCGGTCTTG +
Preference number: 4 (lower is better)
Translates to: AASPRSLPNPDC*NPPKGAATSVL
Trigger: CAAGACCGATGTGGCCGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGCGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACATCACTCACCTCCTTGTCTGGGATGGTaGACACACCCACCACCTCAT +
Preference number: 4 (lower is better)
Translates to: HSQRPPSLLPPPCQHHSPPCLGW*THPPPH
Trigger: ATGAGGTGGTGGGTGTGTTCACCATCCCAGACAAGG...AGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCCTTTCTTATCTCCATaGATGAGGGTCCAGTTGATG +
Preference number: 4 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVPFLSP*MRVQLM
Trigger: CATCAACTGGACCCTCATTCATGGAGATAAGAAAGG...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GACCAAGAGAGGCAGAGCCAAAGAAAGGTGGTAGTGGTTGGCATGCCAAGAAGACCACGGATCCAGTTGTaGATGGCCTCTGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: DQERQSQRKVVVVGMPRRPRIQL*MASAGW
Trigger: CCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGG...TCTTCTTGGCATGCCAACCACTACCACCTTTCTTTGGCTCTGCCTCTCTTGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GTACATGTGGTCCTCCACGTCTGTGAAAACGGTTGGCTGAAAGAAGAAGCCTGGCCACGGATCCAGTTGTaGATGGCCTCTGCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: VHVVLHVCENGWLKEEAWPRIQL*MASAGW
Trigger: CCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGG...CCAGGCTTCTTCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACCACATGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGAAATCTTTGCGACTGATCCAGGTCACTGCCTGCCTGGCCAGGGGAGTTAGATCCATGGGTATGAACTaGCTGCAGAAGGGGAGCACG +
Preference number: 4 (lower is better)
Translates to: LKSLRLIQVTACLARGVRSMGMN*LQKGST
Trigger: CGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGA...TCTAACTCCCCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGAATGCCCTCATAGGTaGCTCCTTCCTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPECPHR*LLPQAG
Trigger: CCCAGCCTGAGGAAGGAGCCACCTATGAGGGCATTC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GATGGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGCAGTTCTCCCCTTTGTTGTGAATGGCCTCTGCTaGCTGGTCCCAGTTGATCAT +
Preference number: 4 (lower is better)
Translates to: DGVLHKEPACRNAVLPFVVNGLC*LVPVDH
Trigger: ATGATCAACTGGGACCAGCCAGCAGAGGCCATTCAC...AACAAAGGGGAGAACTGCATTGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGGATCCAGTTGTGAATaGCCTCTGCTGGCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPGSSCE*PLLAGP
Trigger: GGGACCAGCCAGCAGAGGCCATTCACAACTGGATCC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGTTGCCATCTTCCAGCTaGATATTCTTCACCAGCAAC +
Preference number: 4 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVLPSSS*IFFTSN
Trigger: GTTGCTGGTGAAGAATATCCAGCTGGAAGATGGCAA...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAGCACGGCCTCTGCTGTaGCCAGCTCCTCCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPARPLL*PAPPRS
Trigger: TGACCGAGGAGGAGCTGGCCACAGCAGAGGCCGTGC...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAGAGTCTTCTACCTCTaGGACATTGGGCAGAATTCG +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQARVFYL*DIGQNS
Trigger: CGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCT...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGTCCCCGAAGGTGGTaGCCATGTAAACATCCTCAT +
Preference number: 4 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSSPRRW*PCKHPH
Trigger: ATGAGGATGTTTACATGGCCACCACCTTCGGGGACT...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCACAACAGGTTCCTTCTTaGTCAAGGTCAGGTTGCGGT +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPQQVPS*SRSGCG
Trigger: ACCGCAACCTGACCTTGACCAAGAAGGAACCTGTTG...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCTTCCTCACATCAGGGTaGTCTGAGAGTCTCTGGCCA +
Preference number: 4 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSFLTSG*SESLWP
Trigger: TGGCCAGAGACTCTCAGACCACCCTGATGTGAGGAA...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCACCACAGACCAGTGTaGCCCCTTCCTTCACACCAC +
Preference number: 4 (lower is better)
Translates to: DCSLHLEPLLIVQRVSCHHHRPV*PLPSHH
Trigger: GTGGTGTGAAGGAAGGGGCCACACTGGTCTGTGGTG...GTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp GGGATGACAATACCACAGACCCCAACAGGTTCCTTCTaGGTCAAGGTCAGGTTGCGGTTGGGTCTAGCCTGG +
Preference number: 4 (lower is better)
Translates to: GMTIPQTPTGSF*VKVRLRLGLAW
Trigger: CCAGGCTAGACCCAACCGCAACCTGACCTTGACCAAGAAGGAACCTGTTGGGGTCTGTGGTATTGTCATCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 72 bp GTGAAGACACCAGAGGCCAGGCCAAATTCTGTAGCATaGGCCCGAGATAGCACTGCATCCACGTCCCCATCA +
Preference number: 4 (lower is better)
Translates to: VKTPEARPNSVA*ARDSTASTSPS
Trigger: TGATGGGGACGTGGATGCAGTGCTATCTCGGGCCAATGCTACAGAATTTGGCCTGGCCTCTGGTGTCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GTGAAGACACCAGAGGCCAGGCCAAATTCTGTAGCATTGGCCCGAGATAGCACTATCAGTCGCACAGCCTaGACCATCCCTTTGATGCCC +
Preference number: 4 (lower is better)
Translates to: VKTPEARPNSVALARDSTISRTA*TIPLMP
Trigger: GGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGAT...AGTGCTATCTCGGGCCAATGCTACAGAATTTGGCCTGGCCTCTGGTGTCTTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GGACTCATGGTGACCACTGCCTCTGGTTCCATACGAGGCATCCATAGACAGAGCGGTCCTCCACGTCTGTaGAAACGGTTGGCTGAAAGA +
Preference number: 4 (lower is better)
Translates to: GLMVTTASGSIRGIHRQSGPPRL*KRLAER
Trigger: TCTTTCAGCCAACCGTTTTCACAGACGTGGAGGACC...GCTCTGTCTATGGATGCCTCGTATGGAACCAGAGGCAGTGGTCACCATGAGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp GGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCCAAAAGTCACAGTCTTaGTCCGCAGGTACTCATTCA +
Preference number: 4 (lower is better)
Translates to: GATSDCSEGVLSPAGVQAQKSQS*SAGTHS
Trigger: TGAATGAGTACCTGCGGATCAAGACTGTGACTTTTG...GGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTGGCCAAACAGGCTCTaGCCGATTACTGCAATCTTC +
Preference number: 4 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGWPNRL*PITAIF
Trigger: GAAGATTGCAGTAATCGGGCAGAGCCTGTTTGGCCA...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTGGCCAAACAGGCTCTaGCCGATTACTGCAATCTTC +
Preference number: 4 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSWPNRL*PITAIF
Trigger: GAAGATTGCAGTAATCGGGCAGAGCCTGTTTGGCCA...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCATCAACGTCACACTCCTTCTaGAGCAGAAGGTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: PPSFLFQQPCGGVYTAPSTSHSF*SRRSPV
Trigger: CACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGT...TGATGGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCGAAGGACTCCTCCTTAGCGATGTACATGTGGTCCTCCACGTCTGTGAAAACGCCTGGGCAGCAGAGATaGATGGTAGATGATGGAGCC +
Preference number: 4 (lower is better)
Translates to: PKDSSLAMYMWSSTSVKTPGQQR*MVDDGA
Trigger: GGCTCCATCATCTACCATCCATCTCTGCTGCCCAGG...CGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAAGGAGGAGTCCTTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGAGGCCCCTCGGTGCCTaGGCAGCAGAGATGGATGGT +
Preference number: 4 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLERPLGA*AAEMDG
Trigger: ACCATCCATCTCTGCTGCCCAGGCACCGAGGGGCCT...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GATGGAGTCCTCCACAAAGAGCCGGCCTGCCGCAATGCAGTTCTCCCCTTTGTTCCCTTTGATGCCCTCTaGGAAGAGGAAACGGTTGTA +
Preference number: 4 (lower is better)
Translates to: DGVLHKEPACRNAVLPFVPFDAL*EEETVV
Trigger: TACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGG...AACAAAGGGGAGAACTGCATTGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGATGGCCTCTGCTGGCTaGTCCCAGTTGATCATGGCT +
Preference number: 4 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQMASAG*SQLIMA
Trigger: AGCCATGATCAACTGGGACCAGCCAGCAGAGGCCAT...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTGAAATCTTTGCGACTGATCCAGGTCACTGCCTGCCTGGCCAGGGGAGTTAGAGTGAATGGCCTCTGCTaGCTGGTCCCAGTTGATCAT +
Preference number: 4 (lower is better)
Translates to: LKSLRLIQVTACLARGVRVNGLC*LVPVDH
Trigger: ATGATCAACTGGGACCAGCCAGCAGAGGCCATTCAC...TCTAACTCCCCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCATCAGACCCCTTGAAGAACTaGGAGGCTGGCATCATCTTG +
Preference number: 4 (lower is better)
Translates to: PPSFLFQQPCGGVYTAPSDPLKN*EAGIIL
Trigger: CAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTC...TGATGGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GTGACCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCAGTCCCCGAAGGTGGTaGCCATGTAAACATCCTCAT +
Preference number: 4 (lower is better)
Translates to: VTTQFPIPTAMWWGLHGPSPRRW*PCKHPH
Trigger: ATGAGGATGTTTACATGGCCACCACCTTCGGGGACT...GGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGGTCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGTGGTCTGAGAGTCTCTaGCCAACCAGCGAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRWSESL*PTSEPD
Trigger: ATCTGGCTCGCTGGTTGGCCAGAGACTCTCAGACCA...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp TTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTaGTACCCATTCTGCTTTTGGAGGTGTGTGATGTGC +
Preference number: 4 (lower is better)
Translates to: FLFLGRTLFHSL*YPFCFWRCVMC
Trigger: GCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
3UTR CAA 72 bp ACAAAGAGCCGGCCTGCCGCAATGCAGTTCTCCCCTTaGTTGAAGAAAACGGAGCTCATGCCCATCTGCACA +
Preference number: 4 (lower is better)
Translates to: TKSRPAAMQFSP*LKKTELMPICT
Trigger: TGTGCAGATGGGCATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACTGCATTGCGGCAGGCCGGCTCTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
3UTR CAA 72 bp TTCTGCGGGCCATGGTTGGTATCTCTGTCCAGGGGGTaGCCGATTTTCATCTTCCCTACTTCCTCCACCACT +
Preference number: 4 (lower is better)
Translates to: FCGPWLVSLSRG*PIFIFPTSSTT
Trigger: AGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGATACCAACCATGGCCCGCAGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTCCTTTCTTATCTCCATaGATGAGGGTCCAGTTGATG +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSPFLSP*MRVQLM
Trigger: CATCAACTGGACCCTCATTCATGGAGATAAGAAAGG...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp TGGCCCCTTCCTTCACACCACGTTGGCAATACTCCACCAGCTTCCTCAGGTGGGCCTTTCTTATCTCCATaGATGAGGGTCCAGTTGATG +
Preference number: 4 (lower is better)
Translates to: WPLPSHHVGNTPPASSGGPFLSP*MRVQLM
Trigger: CATCAACTGGACCCTCATTCATGGAGATAAGAAAGG...CCCACCTGAGGAAGCTGGTGGAGTATTGCCAACGTGGTGTGAAGGAAGGGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCATACGGATGCAGCTCCTaGCTTGAAGAAATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPYGCSS*LEEICR
Trigger: TCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTA...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCCTCCGTGGAGCCTGTaGACCCTATTTTCCTCACAT +
Preference number: 4 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQPPWSL*TLFSSH
Trigger: ATGTGAGGAAAATAGGGTTCACAGGCTCCACGGAGG...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGGGCACAGCTTTTCATaGTGTGTTTTCCCACCTCCG +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPGHSFS*CVFPPP
Trigger: CGGAGGTGGGAAAACACATCATGAAAAGCTGTGCCC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CATTCTCAAAGGCCTCCTTCGCTGCTGCCACCGCCTTGTCAACATCACTCACCTAACGGTTGTACAGCGTaGTCACGGTGTCATCTGGAA +
Preference number: 4 (lower is better)
Translates to: HSQRPPSLLPPPCQHHSPNGCTA*SRCHLE
Trigger: TTCCAGATGACACCGTGAGCACGCTGTACAACCGTT...AGGTGAGTGATGTTGACAAGGCGGTGGCAGCAGCGAAGGAGGCCTTTGAGAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTCCCCAAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGAGAAAACGGAGCTCATaGCCATCTGCACAGCTTTGT +
Preference number: 4 (lower is better)
Translates to: LPKSHFLFLGRTLFHSLLRKRSS*PSAQLC
Trigger: ACAAAGCTGTGCAGATGGGCATGAGCTCCGTTTTCT...CAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTTGGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCTCCACCACTTTCTaGACAAACTGGTCATGGATG +
Preference number: 4 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSSSTTF*TNWSWM
Trigger: CATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGA...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGCTCACGGTGTCATCTaGAAGCACGTCACACTCCTT +
Preference number: 4 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRAHGVI*KHVTLL
Trigger: AAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGC...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CCGAAGGACTCCTCCTTAGCGATGTACATGTGGTCCTCCACGTCTGTGAAAACGGCTCACGGTGTCATCTaGAAGCACGTCACACTCCTT +
Preference number: 4 (lower is better)
Translates to: PKDSSLAMYMWSSTSVKTAHGVI*KHVTLL
Trigger: AAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGC...CGTTTTCACAGACGTGGAGGACCACATGTACATCGCTAAGGAGGAGTCCTTCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GTGACCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCAGAGTCTTCTACCTCTaGGACATTGGGCAGAATTCG +
Preference number: 4 (lower is better)
Translates to: VTTQFPIPTAMWWGLHGPRVFYL*DIGQNS
Trigger: CGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCT...GGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGGTCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCATCACAAACTGGTCATGGATaGAGTCCTCCACAAAGAGCC +
Preference number: 4 (lower is better)
Translates to: PPSFLFQQPCGGVYTAPSQTGHG*SPPQRA
Trigger: GGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTG...TGATGGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTCACCACAGACCAGTGTaGCCCCTTCCTTCACACCAC +
Preference number: 4 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTHHRPV*PLPSHH
Trigger: GTGGTGTGAAGGAAGGGGCCACACTGGTCTGTGGTG...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCTGAAAGAAGAAGCCTaGCCTTGGGACTTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: DCSLHLEPLLIVQRVSCHLKEEA*PWDLVP
Trigger: GGGAACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAG...GTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCACTGAAAGAAGAAGCCTaGCCTTGGGACTTGGTTCCC +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPLKEEA*PWDLVP
Trigger: GGGAACCAAGTCCCAAGGCCAGGCTTCTTCTTTCAG...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp CACCCTCTTCCACAGCCTCTTGTACCCATTCTGCTTTaGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCC +
Preference number: 4 (lower is better)
Translates to: HPLPQPLVPILL*EVCDVHFLLCP
Trigger: GGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAGGCTGTGGAAGAGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp TCTGTCCAGGGGGTTGCCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTGCTGAGCCACCAGTCCTaGAGTGTTGAGTGTCGAGTT +
Preference number: 4 (lower is better)
Translates to: SVQGVADFHLPYFLHHFLLSHQS*SVECRV
Trigger: AACTCGACACTCAACACTTCAGGACTGGTGGCTCAG...CAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGTGGCCAAACAGGCTCTaGCCGATTACTGCAATCTTC +
Preference number: 4 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRWPNRL*PITAIF
Trigger: GAAGATTGCAGTAATCGGGCAGAGCCTGTTTGGCCA...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAAACGGTTGTACAGCGTaGTCACGGTGTCATCTGGAA +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPNGCTA*SRCHLE
Trigger: TTCCAGATGACACCGTGAGCACGCTGTACAACCGTT...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGAGCTCATGCCCATCTaGACAGCTTTGTTGAGGTCA +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPELMPI*TALLRS
Trigger: TGACCTCAACAAAGCTGTGCAGATGGGCATGAGCTC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGGCCTCATGGTTCTaGGGGCCATGGTTGGTATCT +
Preference number: 4 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTWASWF*GPWLVS
Trigger: AGATACCAACCATGGCCCGCAGAACCATGAGGCCCA...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CAGGGAAATGTCAGGCTGGGTGGAGTCCCTGCTGTAGACCCCAGGCTACCATTGTTGCCAAATCCAGACTaGTTGAATCCTCCAAAAGGT +
Preference number: 4 (lower is better)
Translates to: QGNVRLGGVPAVDPRLPLLPNPD*LNPPKG
Trigger: ACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAA...CAATGGTAGCCTGGGGTCTACAGCAGGGACTCCACCCAGCCTGACATTTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GCAGTGACACAAAGTGTAGGCGACCTCTGCTCACAATTTTTATTCATGGGGGACGAATGCCCTCATAGGTaGCTCCTTCCTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: AVTQSVGDLCSQFLFMGDECPHR*LLPQAG
Trigger: CCCAGCCTGAGGAAGGAGCCACCTATGAGGGCATTC...GTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCCTACACTTTGTGTCACTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGACTAGGCCTGGACGATaGGCTCCTGGGATGGGTAGA +
Preference number: 4 (lower is better)
Translates to: RPLLTIFIHGGHDCSLHLTRPGR*APGMGR
Trigger: TCTACCCATCCCAGGAGCCCATCGTCCAGGCCTAGT...CAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTCTTGTACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCACTAGGCCTGGACGATaGGCTCCTGGGATGGGTAGA +
Preference number: 4 (lower is better)
Translates to: LLYPFCFWRCVMCISSCVTRPGR*APGMGR
Trigger: TCTACCCATCCCAGGAGCCCATCGTCCAGGCCTAGT...GACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp TTCTGCACAAACTGGTCATGGATGGAGTCCTCCACAAAGAGCCGGCCTGCCGCATTGCCATCTTCCAGCTaGATATTCTTCACCAGCAAC +
Preference number: 4 (lower is better)
Translates to: FCTNWSWMESSTKSRPAALPSSS*IFFTSN
Trigger: GTTGCTGGTGAAGAATATCCAGCTGGAAGATGGCAA...TGCGGCAGGCCGGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTGTGCAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAACAGGTTCCTTCTTaGTCAAGGTCAGGTTGCGGT +
Preference number: 4 (lower is better)
Translates to: DCSLHLEPLLIVQRVSCHQQVPS*SRSGCG
Trigger: ACCGCAACCTGACCTTGACCAAGAAGGAACCTGTTG...GTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GGACTCATGGTGACCACTGCCTCTGGTTCCATACGAGGCATCCATAGACAGAGCACTTTCTGCACAAACTaGTCATGGATGGAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: GLMVTTASGSIRGIHRQSTFCTN*SWMESS
Trigger: GGAGGACTCCATCCATGACCAGTTTGTGCAGAAAGT...GCTCTGTCTATGGATGCCTCGTATGGAACCAGAGGCAGTGGTCACCATGAGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGCCTTGTCTGGGATGGTaGACACACCCACCACCTCAT +
Preference number: 4 (lower is better)
Translates to: RPLLTIFIHGGHDCSLHLPCLGW*THPPPH
Trigger: ATGAGGTGGTGGGTGTGTTCACCATCCCAGACAAGG...CAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAAGTTCTCCCCTTTGTTaGAGAAAACGGAGCTCATGC +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPSSPLC*RKRSSC
Trigger: GCATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACT...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGGCCCAGGGGATCTaGTTTCCCATCCTTGTCTGG +
Preference number: 4 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVQAQGI*FPILVW
Trigger: CCAGACAAGGATGGGAAAGCAGATCCCCTGGGCCTG...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAAGAAAACGGAGCTCATaGCCATCTGCACAGCTTTGT +
Preference number: 4 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPRKRSS*PSAQLC
Trigger: ACAAAGCTGTGCAGATGGGCATGAGCTCCGTTTTCT...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGTCCATGGGTATGAACTaGCTGCAGAAGGGGAGCACG +
Preference number: 4 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLESMGMN*LQKGST
Trigger: CGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGA...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTGAATGCCCTCATAGGTaGCTCCTTCCTCAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVECPHR*LLPQAG
Trigger: CCCAGCCTGAGGAAGGAGCCACCTATGAGGGCATTC...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGATGGCCTCTGCTGGCTaGTCCCAGTTGATCATGGCT +
Preference number: 4 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLEMASAG*SQLIMA
Trigger: AGCCATGATCAACTGGGACCAGCCAGCAGAGGCCAT...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTGGATCCAGTTGTGAATaGCCTCTGCTGGCTGGTCCC +
Preference number: 4 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVGSSCE*PLLAGP
Trigger: GGGACCAGCCAGCAGAGGCCATTCACAACTGGATCC...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp CTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCCAGGGCCTCAATGGTaGCTAGCTCTTCCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: LTIFIHGGHDCSLHLEPLPGPQW*LALPGA
Trigger: AGCACCAGGAAGAGCTAGCCACCATTGAGGCCCTGG...AAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp TTGAATCCTCCAAAAGGTGCGGCCACATCGGTCTTGTaGTATGTGTTGACAAACACAGTGCCCGCCTGCAGT +
Preference number: 4 (lower is better)
Translates to: LNPPKGAATSVL*YVLTNTVPACS
Trigger: ACTGCAGGCGGGCACTGTGTTTGTCAACACATACAACAAGACCGATGTGGCCGCACCTTTTGGAGGATTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GGAGACCTTCTTCACATTACTCAGGGCACAGCTTTTCATGATGTGTTTTCCCACCCTGAACCATCCCTTTaGTGCCCTCTGGGAAGAGGA +
Preference number: 4 (lower is better)
Translates to: GDLLHITQGTAFHDVFSHPEPSL*CPLGRG
Trigger: TCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGG...GTGGGAAAACACATCATGAAAAGCTGTGCCCTGAGTAATGTGAAGAAGGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp ACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATCAGTCGCACAGCCTaGACCATCCCTTTGATGCCC +
Preference number: 4 (lower is better)
Translates to: TIFIHGGHDCSLHLEPLLISRTA*TIPLMP
Trigger: GGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGAT...CAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GCAGTGACACAAAGTGTAGGCGACCTCTGCTCACAATTTTTATTCATGGGGGACCTGGCTGGTCCCAGTTaGTCATGGCTGTCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: AVTQSVGDLCSQFLFMGDLAGPS*SWLSPF
Trigger: AAAAGGAGACAGCCATGATCAACTGGGACCAGCCAG...GTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCCTACACTTTGTGTCACTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTGAGCCACCAGTCCTaGAGTGTTGAGTGTCGAGTT +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPLSHQS*SVECRV
Trigger: AACTCGACACTCAACACTTCAGGACTGGTGGCTCAG...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGTACGGATGCAGCTCCTaGCTTGAAGAAATCTGTAGA +
Preference number: 4 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRYGCSS*LEEICR
Trigger: TCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTA...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTCAAATCCAGACTGCTTaGATCCTCCAAAAGGTGCGG +
Preference number: 4 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTQIQTA*ILQKVR
Trigger: CCGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTG...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp AAGTCTCATTTCCTGTTTCTGGGGCGCACCCTCTTCCACAGCCTCTTGTACCCACAAAAGTCACAGTCTTaGTCCGCAGGTACTCATTCA +
Preference number: 4 (lower is better)
Translates to: KSHFLFLGRTLFHSLLYPQKSQS*SAGTHS
Trigger: TGAATGAGTACCTGCGGATCAAGACTGTGACTTTTG...TGGGTACAAGAGGCTGTGGAAGAGGGTGCGCCCCAGAAACAGGAAATGAGACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAACGTCACACTCCTTCTaGAGCAGAAGGTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPTSHSF*SRRSPV
Trigger: CACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGT...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTAGTCAGTTTCTTCACTaGCTTTTCCACGTAGTTAAT +
Preference number: 4 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSSQFLH*LFHVVN
Trigger: ATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACT...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGTCAGTTTCTTCACTaGCTTTTCCACGTAGTTAAT +
Preference number: 4 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSSQFLH*LFHVVN
Trigger: ATTAACTACGTGGAAAAGGCAGTGAAGAAACTGACT...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp ACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGTGGGCCTCATGGTTCTaGGGGCCATGGTTGGTATCT +
Preference number: 4 (lower is better)
Translates to: TIFIHGGHDCSLHLEPLLWASWF*GPWLVS
Trigger: AGATACCAACCATGGCCCGCAGAACCATGAGGCCCA...CAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTTTCCCATCCTTGTCTaGGATGGTGAACACACCCAC +
Preference number: 4 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTFPILV*DGEHTH
Trigger: GTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAA...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp AGTGACACAAAGTGTAGGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATCGTCCAGGGCCTCAATaGTGGCTAGCTCTTCCTGGT +
Preference number: 4 (lower is better)
Translates to: SDTKCRRPLLTIFIHGGHRPGPQ*WLALPG
Trigger: ACCAGGAAGAGCTAGCCACCATTGAGGCCCTGGACG...ATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCCTACACTTTGTGTCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTTGGTCTGAGAGTCTCTaGCCAACCAGCGAGCCAGAT +
Preference number: 4 (lower is better)
Translates to: LTIFIHGGHDCSLHLEPLWSESL*PTSEPD
Trigger: ATCTGGCTCGCTGGTTGGCCAGAGACTCTCAGACCA...AAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCTGAGCCACCAGTCCTaGAGTGTTGAGTGTCGAGTT +
Preference number: 4 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVLSHQS*SVECRV
Trigger: AACTCGACACTCAACACTTCAGGACTGGTGGCTCAG...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR TCA 90 bp CGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGAAAGATGATAAGGGGTaGCTTTCCACCCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: RPLLTIFIHGGHDCSLHLKDDKG*LSTQLQ
Trigger: CTGGAGCTGGGTGGAAAGTCACCCCTTATCATCTTT...CAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp ACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGGTTGTGAATGGCCTCTaGTGGCTGGTCCCAGTTGAT +
Preference number: 4 (lower is better)
Translates to: TIFIHGGHDCSLHLEPLLVVNGL*WLVPVD
Trigger: ATCAACTGGGACCAGCCAGCAGAGGCCATTCACAAC...CAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp GGAGACCTTCTTCACATTACTCAGGGCACAGCTTTTCATGATGTGTTTTCCCACGTTGTGAATGGCCTCTaGTGGCTGGTCCCAGTTGAT +
Preference number: 4 (lower is better)
Translates to: GDLLHITQGTAFHDVFSHVVNGL*WLVPVD
Trigger: ATCAACTGGGACCAGCCAGCAGAGGCCATTCACAAC...GTGGGAAAACACATCATGAAAAGCTGTGCCCTGAGTAATGTGAAGAAGGTCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR GCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAGAATCCTCCAAAAGGTaGGGCCACATCGGTCTTGTT +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPESSKR*GHIGLV
Trigger: AACAAGACCGATGTGGCCGCACCTTTTGGAGGATTC...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGTTGCCAAATCCAGACTaGTTGAATCCTCCAAAAGGT +
Preference number: 4 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQLPNPD*LNPPKG
Trigger: ACCTTTTGGAGGATTCAAGCAGTCTGGATTTGGCAA...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACAAACTGGTCATGGATaGAGTCCTCCACAAAGAGCC +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPQTGHG*SPPQRA
Trigger: GGCTCTTTGTGGAGGACTCCATCCATGACCAGTTTG...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCATCTGCACAGCTTTGTTaGGGTCACAGTCAGCAAAGA +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPSAQLC*GHSQQR
Trigger: TCTTTGCTGACTGTGACCTCAACAAAGCTGTGCAGA...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR TCA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAAGTTCTCCCCTTTGTTaGAGAAAACGGAGCTCATGC +
Preference number: 4 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPSSPLC*RKRSSC
Trigger: GCATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACT...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR GCA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTAACGGTTGTACAGCGTaGTCACGGTGTCATCTGGAA +
Preference number: 4 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVNGCTA*SRCHLE
Trigger: TTCCAGATGACACCGTGAGCACGCTGTACAACCGTT...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CCA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTTGCCATCTTCCAGCTaGATATTCTTCACCAGCAAC +
Preference number: 4 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTLPSSS*IFFTSN
Trigger: GTTGCTGGTGAAGAATATCCAGCTGGAAGATGGCAA...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CCA 90 bp ACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGAAGTATCGGAAGGTCTaGATGGACATGCCCACATGC +
Preference number: 4 (lower is better)
Translates to: TIFIHGGHDCSLHLEPLLKYRKV*MDMPTC
Trigger: GCATGTGGGCATGTCCATCCAGACCTTCCGATACTT...CAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
3UTR CAA 72 bp TTGAAGAAAACGGAGCTCATGCCCATCTGCACAGCTTaGTTGAGGTCACAGTCAGCAAAGATGATAAGGGGT +
Preference number: 4 (lower is better)
Translates to: LKKTELMPICTA*LRSQSAKMIRG
Trigger: ACCCCTTATCATCTTTGCTGACTGTGACCTCAACAAAGCTGTGCAGATGGGCATGAGCTCCGTTTTCTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS GCA 90 bp GGTGGCTCCTTCCTCAGGCTGGGGACGGCGTGGGGCTGTGCCCTCTaGAATCAGTCGCACAGCCTGAACCATCCCTTTGATGCCCTCTGG +
Preference number: 5 (lower is better)
Translates to: GGSFLRLGTAWGCAL*NQSHSLNHPFDALW
Trigger: CCAGAGGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTCCCCAGCCTGAGGAAGGAGCCACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CCA 90 bp AACTGGCTGCAGAAGGGGAGCACGTTGAGTTCTGCACCCAGAGCCTaGTACTTGGCCACGACCTCGGGCAGAGCCTGTCCTCGAGCCCGC +
Preference number: 5 (lower is better)
Translates to: NWLQKGSTLSSAPRA*YLATTSGRACPRAR
Trigger: GCGGGCTCGAGGACAGGCTCTGCCCGAGGTCGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAGCCAGTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS CCA 90 bp CTGAATGCCCTCATAGGTGGCTCCTTCCTCAGGCTGGGGACGGCGTaGGGCTGTGCCCTCTGCAATCAGTCGCACAGCCTGAACCATCCC +
Preference number: 5 (lower is better)
Translates to: LNALIGGSFLRLGTA*GCALCNQSHSLNHP
Trigger: GGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTCCCCAGCCTGAGGAAGGAGCCACCTATGAGGGCATTCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTTGGGTCTAGCCTGGTaGATGGGGATGGTGGCACCC +
Preference number: 5 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGLGLAW*MGMVAP
Trigger: GGGTGCCACCATCCCCATCAACCAGGCTAGACCCAA...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGGCCTGGCCTTGGGACTaGGTTCCCACCACAGACCAG +
Preference number: 5 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEAWPWD*VPTTDQ
Trigger: CTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGGC...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCGTGCCCGCCTGCAGTTaGTCACTGACATACAGGGCC +
Preference number: 5 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSVPACS*SLTYRA
Trigger: GGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCAC...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS GCA 90 bp CTCCATGGGTATGAACTGGCTGCAGAAGGGGAGCACGTTGAGTTCTaGACCCAGAGCCTGGTACTTGGCCACGACCTCGGGCAGAGCCTG +
Preference number: 5 (lower is better)
Translates to: LHGYELAAEGEHVEF*TQSLVLGHDLGQSL
Trigger: CAGGCTCTGCCCGAGGTCGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGAGGATGAGTCCCGCTTaGGTGACTAGGCCTGGACGA +
Preference number: 5 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVRMSPA*VTRPGR
Trigger: TCGTCCAGGCCTAGTCACCAAAGCGGGACTCATCCT...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 90 bp TGGGGACGGCGTGGGGCTGTGCCCTCTGCAATCAGTCGCACAGCCTaGACCATCCCTTTGATGCCCTCTGGGAAGAGGAAACGGTTGTAC +
Preference number: 5 (lower is better)
Translates to: WGRRGAVPSAISRTA*TIPLMPSGKRKRLY
Trigger: GTACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp AGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAAGGTCAGGTTGCGGTaGGGTCTAGCCTGGTTGATG +
Preference number: 5 (lower is better)
Translates to: RVSCHQQGSRPRAPAAERKVRLR*GLAWLM
Trigger: CATCAACCAGGCTAGACCCAACCGCAACCTGACCTT...CCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTTTGGTCAAGGTCAGGTaGCGGTTGGGTCTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSLVKVR*RLGLAW
Trigger: CCAGGCTAGACCCAACCGCAACCTGACCTTGACCAA...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTAGAAGAAGCCTGGCCTaGGGACTTGGTTCCCACCAC +
Preference number: 5 (lower is better)
Translates to: SCHQQGSRPRAPAAERSSRRSLA*GLGSHH
Trigger: GTGGTGGGAACCAAGTCCCAAGGCCAGGCTTCTTCT...ACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS TCA 90 bp GGGCTGTGCCCTCTGCAATCAGTCGCACAGCCTGAACCATCCCTTTaGTGCCCTCTGGGAAGAGGAAACGGTTGTACAGCGTGCTCACGG +
Preference number: 5 (lower is better)
Translates to: GLCPLQSVAQPEPSL*CPLGRGNGCTACSR
Trigger: CCGTGAGCACGCTGTACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTAGGATGAGTCCCGCTTaGGTGACTAGGCCTGGACGA +
Preference number: 5 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSRMSPA*VTRPGR
Trigger: TCGTCCAGGCCTAGTCACCAAAGCGGGACTCATCCT...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGGATGAGTCCCGCTTaGGTGACTAGGCCTGGACGA +
Preference number: 5 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSRMSPA*VTRPGR
Trigger: TCGTCCAGGCCTAGTCACCAAAGCGGGACTCATCCT...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 90 bp TCTGTCCAGGCACCTGGCACCTTGTCATTCCCACGGATCCAGTTGTaGATGGCCTCTGCTGGCTGGTCCCAGTTGATCATGGCTGTCTCC +
Preference number: 5 (lower is better)
Translates to: SVQAPGTLSFPRIQL*MASAGWSQLIMAVS
Trigger: GGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGGAGCTGGTAGGGCATTaGGAGAGTCAGTTTCTTCAC +
Preference number: 5 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVELVGH*ESQFLH
Trigger: GTGAAGAAACTGACTCTCCAAATGCCCTACCAGCTC...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTAAGGTCAGGTTGCGGTaGGGTCTAGCCTGGTTGATG +
Preference number: 5 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSKVRLR*GLAWLM
Trigger: CATCAACCAGGCTAGACCCAACCGCAACCTGACCTT...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp ACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTTGGTCAAGGTCAGGTaGCGGTTGGGTCTAGCCTGG +
Preference number: 5 (lower is better)
Translates to: TSDCSEGVLSPAGVQAKSLVKVR*RLGLAW
Trigger: CCAGGCTAGACCCAACCGCAACCTGACCTTGACCAA...GCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCCCAACAGGTTCCTTCTaGGTCAAGGTCAGGTTGCGG +
Preference number: 5 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSPTGSF*VKVRLR
Trigger: CCGCAACCTGACCTTGACCAAGAAGGAACCTGTTGG...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGATGTTGACCACACCCTaGGGAATGCCAGCCTTCAGT +
Preference number: 5 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEMLTTP*GMPAFS
Trigger: ACTGAAGGCTGGCATTCCCAAGGGTGTGGTCAACAT...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS GCA 90 bp TACAGCGTGCTCACGGTGTCATCTGGAAGCACGTCACACTCCTTCTaGAGCAGAAGGTCACCAGTGTCCAGACCGTCATCAGCCCAGAAG +
Preference number: 5 (lower is better)
Translates to: YSVLTVSSGSTSHSF*SRRSPVSRPSSAQK
Trigger: CTTCTGGGCTGATGACGGTCTGGACACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGCACGCTGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTGAAATCTTTGCGACTGATCCAGGTCACTGCCTGCCTGGCCAGGGGAGTTAGAGGGAAGAGGAAACGGTaGTACAGCGTGCTCACGGTG +
Preference number: 5 (lower is better)
Translates to: LKSLRLIQVTACLARGVRGKRKR*YSVLTV
Trigger: CACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCC...TCTAACTCCCCTGGCCAGGCAGGCAGTGACCTGGATCAGTCGCAAAGATTTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGACCAGTCCTGAAGTGTaGAGTGTCGAGTTGAAAAAC +
Preference number: 5 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGTSPEV*SVELKN
Trigger: GTTTTTCAACTCGACACTCAACACTTCAGGACTGGT...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCGAGGCTGGCATCATCTaGCCATCTTCCAGCTGGATA +
Preference number: 5 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSEAGII*PSSSWI
Trigger: TATCCAGCTGGAAGATGGCAAGATGATGCCAGCCTC...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp GTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCACATACAGGGCCTTGTaGATATCCCGAGTGAAGACA +
Preference number: 5 (lower is better)
Translates to: VSCHQQGSRPRAPAAERSTYRAL*ISRVKT
Trigger: TGTCTTCACTCGGGATATCAACAAGGCCCTGTATGT...GCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACGTGCCCGCCTGCAGTTaGTCACTGACATACAGGGCC +
Preference number: 5 (lower is better)
Translates to: DCSLHLEPLLIVQRVSCHVPACS*SLTYRA
Trigger: GGCCCTGTATGTCAGTGACAAACTGCAGGCGGGCAC...GTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp AGTGCTGGGGACAGGAGGGTGCTAAGTCACCAGACAGGGTCAGCACTCCCTGAGCCAAATCCAGACTGCTaGAATCCTCCAAAAGGTGCG +
Preference number: 5 (lower is better)
Translates to: SAGDRRVLSHQTGSALPEPNPDC*NPPKGA
Trigger: CGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGG...CTCAGGGAGTGCTGACCCTGTCTGGTGACTTAGCACCCTCCTGTCCCCAGCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTCAAAAGTCACAGTCTaGATCCGCAGGTACTCATTC +
Preference number: 5 (lower is better)
Translates to: GPGQELQQLKGAVLGTGGSKVTV*IRRYSF
Trigger: GAATGAGTACCTGCGGATCAAGACTGTGACTTTTGA...CCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS TCA 90 bp ACTAGGCCTGGACGATGGGCTCCTGGGATGGGTAGAGCTTCTCCCTaGGCCACCAGTCCTGAAGTGTTGAGTGTCGAGTTGAAAAACGTC +
Preference number: 5 (lower is better)
Translates to: TRPGRWAPGMGRASP*ATSPEVLSVELKNV
Trigger: GACGTTTTTCAACTCGACACTCAACACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATCGTCCAGGCCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CCA 90 bp CTCTGGGAAGAGGAAACGGTTGTACAGCGTGCTCACGGTGTCATCTaGAAGCACGTCACACTCCTTCTGCAGCAGAAGGTCACCAGTGTC +
Preference number: 5 (lower is better)
Translates to: LWEEETVVQRAHGVI*KHVTLLLQQKVTSV
Trigger: GACACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CCA 90 bp GTTGAAAAACGTCAGCTTCTGCCCACAAGCCTCTGTCCAGGCACCTaGCACCTTGTCATTCCCACGGATCCAGTTGTGAATGGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: VEKRQLLPTSLCPGT*HLVIPTDPVVNGLC
Trigger: GCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAGGTGCCAGGTGCCTGGACAGAGGCTTGTGGGCAGAAGCTGACGTTTTTCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CCA 90 bp TCCTCGGTCAGCTCCAGGGCACTGCTAGCAGACCCCTTGAAGAACTaGGAGGCTGGCATCATCTTGCCATCTTCCAGCTGGATATTCTTC +
Preference number: 5 (lower is better)
Translates to: SSVSSRALLADPLKN*EAGIILPSSSWIFF
Trigger: GAAGAATATCCAGCTGGAAGATGGCAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTCTGCTAGCAGTGCCCTGGAGCTGACCGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGGATGCAGCTCCTGACTaGAAGAAATCTGTAGAGTCT +
Preference number: 5 (lower is better)
Translates to: PVTSRGPGQELQQLKGAVDAAPD*KKSVES
Trigger: AGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATC...CACTGCTCCTTTCAGCTGCTGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGATGTTGACCACACCCTaGGGAATGCCAGCCTTCAGT +
Preference number: 5 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGMLTTP*GMPAFS
Trigger: ACTGAAGGCTGGCATTCCCAAGGGTGTGGTCAACAT...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS CCA 90 bp CAGCTCCAGGGCACTGCTAGCAGACCCCTTGAAGAACTGGGAGGCTaGCATCATCTTGCCATCTTCCAGCTGGATATTCTTCACCAGCAA +
Preference number: 5 (lower is better)
Translates to: QLQGTASRPLEELGG*HHLAIFQLDILHQQ
Trigger: TTGCTGGTGAAGAATATCCAGCTGGAAGATGGCAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTCTGCTAGCAGTGCCCTGGAGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCGTGTTGAGTGTCGAGTaGAAAAACGTCAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSVLSVE*KNVSFC
Trigger: GCAGAAGCTGACGTTTTTCAACTCGACACTCAACAC...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCTCTACCTCTGGGACATaGGGCAGAATTCGCATCCAA +
Preference number: 5 (lower is better)
Translates to: HLEPLLIVQRVSCHQQGSSTSGT*GRIRIQ
Trigger: TTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGA...GGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCCAACAGGTTCCTTCTaGGTCAAGGTCAGGTTGCGG +
Preference number: 5 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQPTGSF*VKVRLR
Trigger: CCGCAACCTGACCTTGACCAAGAAGGAACCTGTTGG...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCAATCTGCACAGCTTTGTaGAGGTCACAGTCAGCAAAG +
Preference number: 5 (lower is better)
Translates to: LIVQRVSCHQQGSRPRAPICTAL*RSQSAK
Trigger: CTTTGCTGACTGTGACCTCAACAAAGCTGTGCAGAT...TGGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CCAAGAGCTCCAGCAGCTGAAAGGAGCAGTGCTGGGGACAGGAGGGTGCTAAGTATGCAGTTCTCCCCTTaGTTGAAGAAAACGGAGCTC +
Preference number: 5 (lower is better)
Translates to: PRAPAAERSSAGDRRVLSMQFSP*LKKTEL
Trigger: GAGCTCCGTTTTCTTCAACAAAGGGGAGAACTGCAT...ACTTAGCACCCTCCTGTCCCCAGCACTGCTCCTTTCAGCTGCTGGAGCTCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTTCTGCGGGCCATGGTaGGTATCTCTGTCCAGGGGG +
Preference number: 5 (lower is better)
Translates to: GDLCSQFLFMGDMTAHSTFCGPW*VSLSRG
Trigger: CCCCCTGGACAGAGATACCAACCATGGCCCGCAGAA...AGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAGCCTGGCCTTGGGACTaGGTTCCCACCACAGACCAG +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPAWPWD*VPTTDQ
Trigger: CTGGTCTGTGGTGGGAACCAAGTCCCAAGGCCAGGC...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS CCA 90 bp TGGCACCTTGTCATTCCCACGGATCCAGTTGTGAATGGCCTCTGCTaGCTGGTCCCAGTTGATCATGGCTGTCTCCTTTTTCTGAATGCC +
Preference number: 5 (lower is better)
Translates to: WHLVIPTDPVVNGLC*LVPVDHGCLLFLNA
Trigger: GGCATTCAGAAAAAGGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAGGTGCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGTCCAGGCCAAGAGCTCCACCAGTCCTGAAGTGTaGAGTGTCGAGTTGAAAAAC +
Preference number: 5 (lower is better)
Translates to: SDCSEGVLSPAGVQAKSSTSPEV*SVELKN
Trigger: GTTTTTCAACTCGACACTCAACACTTCAGGACTGGT...GGAGCTCTTGGCCTGGACCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGAGGCTGGCATCATCTaGCCATCTTCCAGCTGGATA +
Preference number: 5 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPEAGII*PSSSWI
Trigger: TATCCAGCTGGAAGATGGCAAGATGATGCCAGCCTC...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CGACCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGTTGGGTCTAGCCTGGTaGATGGGGATGGTGGCACCC +
Preference number: 5 (lower is better)
Translates to: RPLLTIFIHGGHDCSLHLLGLAW*MGMVAP
Trigger: GGGTGCCACCATCCCCATCAACCAGGCTAGACCCAA...CAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS GCA 90 bp ACCTGGCACCTTGTCATTCCCACGGATCCAGTTGTGAATGGCCTCTaGTGGCTGGTCCCAGTTGATCATGGCTGTCTCCTTTTTCTGAAT +
Preference number: 5 (lower is better)
Translates to: TWHLVIPTDPVVNGL*WLVPVDHGCLLFLN
Trigger: ATTCAGAAAAAGGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAGGTGCCAGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TCATCTTCCCTACTTCCTCCACCACTTTCTGCACAAACTGGTCATGGATGGAGTGGGAAGAGGAAACGGTaGTACAGCGTGCTCACGGTG +
Preference number: 5 (lower is better)
Translates to: SSSLLPPPLSAQTGHGWSGKRKR*YSVLTV
Trigger: CACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCC...ACTCCATCCATGACCAGTTTGTGCAGAAAGTGGTGGAGGAAGTAGGGAAGATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCACCCAGTTTCCTATTCCAACAGCCATGTGGTGGGGTTTACACGGCCCCATCAGTGTTGAGTGTCGAGTaGAAAAACGTCAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: PPSFLFQQPCGGVYTAPSVLSVE*KNVSFC
Trigger: GCAGAAGCTGACGTTTTTCAACTCGACACTCAACAC...TGATGGGGCCGTGTAAACCCCACCACATGGCTGTTGGAATAGGAAACTGGGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGTCTACCTCTGGGACATaGGGCAGAATTCGCATCCAA +
Preference number: 5 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQSTSGT*GRIRIQ
Trigger: TTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGA...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGGATGCAGCTCCTGACTaGAAGAAATCTGTAGAGTCT +
Preference number: 5 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGDAAPD*KKSVES
Trigger: AGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATC...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGGAGCTGGTAGGGCATTaGGAGAGTCAGTTTCTTCAC +
Preference number: 5 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQELVGH*ESQFLH
Trigger: GTGAAGAAACTGACTCTCCAAATGCCCTACCAGCTC...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTTTCTGCGGGCCATGGTaGGTATCTCTGTCCAGGGGG +
Preference number: 5 (lower is better)
Translates to: FIHGGHDCSLHLEPLLIVFCGPW*VSLSRG
Trigger: CCCCCTGGACAGAGATACCAACCATGGCCCGCAGAA...AACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCCACTAAGAAGAAGCCTGGCCTaGGGACTTGGTTCCCACCAC +
Preference number: 5 (lower is better)
Translates to: YPFCFWRCVMCISSCVPLRRSLA*GLGSHH
Trigger: GTGGTGGGAACCAAGTCCCAAGGCCAGGCTTCTTCT...TAGTGGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGCTGACATACAGGGCCTaGTTGATATCCCGAGTGAAG +
Preference number: 5 (lower is better)
Translates to: HGGHDCSLHLEPLLIVQRLTYRA*LISRVK
Trigger: CTTCACTCGGGATATCAACAAGGCCCTGTATGTCAG...CCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGCAGGGGGCCACATCGGTCTTGTaGTATGTGTTGACAAACACA +
Preference number: 5 (lower is better)
Translates to: LHLEPLLIVQRVSCHQQGATSVL*YVLTNT
Trigger: TGTGTTTGTCAACACATACAACAAGACCGATGTGGC...CCCCTGCTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS TCA 90 bp CTTCACCTCCTCCACCAGCCTCACAACATCTACGGATGCAGCTCCTaGCTTGAAGAAATCTGTAGAGTCTTCTACCTCTGGGACATTGGG +
Preference number: 5 (lower is better)
Translates to: LHLLHQPHNIYGCSS*LEEICRVFYLWDIG
Trigger: CCCAATGTCCCAGAGGTAGAAGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTAGATGTTGTGAGGCTGGTGGAGGAGGTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp ACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTCTGGGGAAGAGGAAACGGTaGTACAGCGTGCTCACGGTG +
Preference number: 5 (lower is better)
Translates to: TIFIHGGHDCSLHLEPLLGKRKR*YSVLTV
Trigger: CACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCC...CAGAAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAGCTGGCTGGTCCCAGTaGATCATGGCTGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPAGWSQ*IMAVSF
Trigger: AAAGGAGACAGCCATGATCAACTGGGACCAGCCAGC...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCACAGTTCTCCCCTTTGTaGAAGAAAACGGAGCTCATG +
Preference number: 5 (lower is better)
Translates to: LLTPLGATSDCSEGVLSPQFSPL*KKTELM
Trigger: CATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACTG...TGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAGCCTCTCCCAGGTCTTaGCCAAATCCAGACTGCTTG +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPASPRS*PNPDCL
Trigger: CAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGC...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GACTGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACACCAGTCCTGAAGTGTaGAGTGTCGAGTTGAAAAAC +
Preference number: 5 (lower is better)
Translates to: DCSLHLEPLLIVQRVSCHTSPEV*SVELKN
Trigger: GTTTTTCAACTCGACACTCAACACTTCAGGACTGGT...GTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CAGCTCCAGGGAGACCTTCTTCACATTACTCAGGGCACAGCTTTTCATGATGTGTCTACCTCTGGGACATaGGGCAGAATTCGCATCCAA +
Preference number: 5 (lower is better)
Translates to: QLQGDLLHITQGTAFHDVSTSGT*GRIRIQ
Trigger: TTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGA...CACATCATGAAAAGCTGTGCCCTGAGTAATGTGAAGAAGGTCTCCCTGGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCCATCTGCACAGCTTaGTTGAGGTCACAGTCAGCA +
Preference number: 5 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLEPICTA*LRSQSA
Trigger: TGCTGACTGTGACCTCAACAAAGCTGTGCAGATGGG...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTCTTGTACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCCCATCTGCACAGCTTaGTTGAGGTCACAGTCAGCA +
Preference number: 5 (lower is better)
Translates to: LLYPFCFWRCVMCISSCVPICTA*LRSQSA
Trigger: TGCTGACTGTGACCTCAACAAAGCTGTGCAGATGGG...GACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTACAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCATCTCTGTCCAGGGGGTaGCCGATTTTCATCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPSLSRG*PIFIFP
Trigger: AGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGA...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TGCTCACTCCACTTGGAGCCACTTCTGATTGTTCAGAGGGTGTCCTGTCACCAGGCCACATCGGTCTTGTaGTATGTGTTGACAAACACA +
Preference number: 5 (lower is better)
Translates to: CSLHLEPLLIVQRVSCHQATSVL*YVLTNT
Trigger: TGTGTTTGTCAACACATACAACAAGACCGATGTGGC...CTGGTGACAGGACACCCTCTGAACAATCAGAAGTGGCTCCAAGTGGAGTGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTGCCTCTCCCAGGTCTTaGCCAAATCCAGACTGCTTG +
Preference number: 5 (lower is better)
Translates to: LTIFIHGGHDCSLHLEPLASPRS*PNPDCL
Trigger: CAAGCAGTCTGGATTTGGCAAAGACCTGGGAGAGGC...AAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp AGTGACACAAAGTGTAGGCGACCTCTGCTCACAATTTTTATTCATGGGGGACATGCTGGCTGGTCCCAGTaGATCATGGCTGTCTCCTTT +
Preference number: 5 (lower is better)
Translates to: SDTKCRRPLLTIFIHGGHAGWSQ*IMAVSF
Trigger: AAAGGAGACAGCCATGATCAACTGGGACCAGCCAGC...ATGTCCCCCATGAATAAAAATTGTGAGCAGAGGTCGCCTACACTTTGTGTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TCTGTCCAGGGGGTTGCCGATTTTCATCTTCCCTACTTCCTCCACCACTTTCTGGATGCAGCTCCTGACTaGAAGAAATCTGTAGAGTCT +
Preference number: 5 (lower is better)
Translates to: SVQGVADFHLPYFLHHFLDAAPD*KKSVES
Trigger: AGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATC...CAGAAAGTGGTGGAGGAAGTAGGGAAGATGAAAATCGGCAACCCCCTGGACAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204796.3
CDS-3UTR CAA 90 bp CTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTTCTCTGTCCAGGGGGTaGCCGATTTTCATCTTCCCT +
Preference number: 5 (lower is better)
Translates to: LTIFIHGGHDCSLHLEPLSLSRG*PIFIFP
Trigger: AGGGAAGATGAAAATCGGCAACCCCCTGGACAGAGA...AAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp TACCCATTCTGCTTTTGGAGGTGTGTGATGTGCATTTCCTCCTGTGTCCCACTACTGACATACAGGGCCTaGTTGATATCCCGAGTGAAG +
Preference number: 5 (lower is better)
Translates to: YPFCFWRCVMCISSCVPLLTYRA*LISRVK
Trigger: CTTCACTCGGGATATCAACAAGGCCCTGTATGTCAG...TAGTGGGACACAGGAGGAAATGCACATCACACACCTCCAAAAGCAGAATGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAAATCCAGACTGCTaGAATCCTCCAAAAGGTGCG +
Preference number: 5 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLEPNPDC*NPPKGA
Trigger: CGCACCTTTTGGAGGATTCAAGCAGTCTGGATTTGG...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp GACCAAGAGAGGCAGAGCCAAAGAAAGGTGGTAGTGGTTGGCATGCCAAGAAGATCAAAAGTCACAGTCTaGATCCGCAGGTACTCATTC +
Preference number: 5 (lower is better)
Translates to: DQERQSQRKVVVVGMPRRSKVTV*IRRYSF
Trigger: GAATGAGTACCTGCGGATCAAGACTGTGACTTTTGA...TCTTCTTGGCATGCCAACCACTACCACCTTTCTTTGGCTCTGCCTCTCTTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAATCTGCACAGCTTTGTaGAGGTCACAGTCAGCAAAG +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPICTAL*RSQSAK
Trigger: CTTTGCTGACTGTGACCTCAACAAAGCTGTGCAGAT...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CCTCTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCAGTTCTCCCCTTTGTaGAAGAAAACGGAGCTCATG +
Preference number: 5 (lower is better)
Translates to: PLLTIFIHGGHDCSLHLEQFSPL*KKTELM
Trigger: CATGAGCTCCGTTTTCTTCAACAAAGGGGAGAACTG...CTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTGCTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCAACATACAGGGCCTTGTaGATATCCCGAGTGAAGACA +
Preference number: 5 (lower is better)
Translates to: LLTIFIHGGHDCSLHLEPTYRAL*ISRVKT
Trigger: TGTCTTCACTCGGGATATCAACAAGGCCCTGTATGT...TGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS-3UTR CAA 90 bp CTCACAATTTTTATTCATGGGGGACATGACTGCTCACTCCACTTGGAGCCACTTGTGTTGAGTGTCGAGTaGAAAAACGTCAGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: LTIFIHGGHDCSLHLEPLVLSVE*KNVSFC
Trigger: GCAGAAGCTGACGTTTTTCAACTCGACACTCAACAC...AAGTGGCTCCAAGTGGAGTGAGCAGTCATGTCCCCCATGAATAAAAATTGTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 90 bp CTGCAGAAGGGGAGCACGTTGAGTTCTGCACCCAGAGCCTGGTACTaGGCCACGACCTCGGGCAGAGCCTGTCCTCGAGCCCGCCACCGA +
Preference number: 6 (lower is better)
Translates to: LQKGSTLSSAPRAWY*ATTSGRACPRARHR
Trigger: TCGGTGGCGGGCTCGAGGACAGGCTCTGCCCGAGGTCGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS CCA 72 bp CAGAAGGGGAGCACGTTGAGTTCTGCACCCAGAGCCTaGTACTTGGCCACGACCTCGGGCAGAGCCTGTCCT +
Preference number: 6 (lower is better)
Translates to: QKGSTLSSAPRA*YLATTSGRACP
Trigger: AGGACAGGCTCTGCCCGAGGTCGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS CAA 90 bp CCATCCTTCTCGGCCTCCAGGCCCAGGGGATCTGCTTTCCCATCCTaGTCTGGGATGGTGAACACACCCACCACCTCATGGCCCTCCTTC +
Preference number: 6 (lower is better)
Translates to: PSFSASRPRGSAFPS*SGMVNTPTTSWPSF
Trigger: GAAGGAGGGCCATGAGGTGGTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAAGCAGATCCCCTGGGCCTGGAGGCCGAGAAGGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS GCA 72 bp TTCCTCAGGCTGGGGACGGCGTGGGGCTGTGCCCTCTaGAATCAGTCGCACAGCCTGAACCATCCCTTTGAT +
Preference number: 6 (lower is better)
Translates to: FLRLGTAWGCAL*NQSHSLNHPFD
Trigger: ATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACGCCGTCCCCAGCCTGAGGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 72 bp TCGGCCTCCAGGCCCAGGGGATCTGCTTTCCCATCCTaGTCTGGGATGGTGAACACACCCACCACCTCATGG +
Preference number: 6 (lower is better)
Translates to: SASRPRGSAFPS*SGMVNTPTTSW
Trigger: CCATGAGGTGGTGGGTGTGTTCACCATCCCAGACAAGGATGGGAAAGCAGATCCCCTGGGCCTGGAGGCCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 90 bp TTGATGACCTCCATGGGTATGAACTGGCTGCAGAAGGGGAGCACGTaGAGTTCTGCACCCAGAGCCTGGTACTTGGCCACGACCTCGGGC +
Preference number: 6 (lower is better)
Translates to: LMTSMGMNWLQKGST*SSAPRAWYLATTSG
Trigger: GCCCGAGGTCGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGAGGTCATCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS TCA 72 bp CGTGGGGCTGTGCCCTCTGCAATCAGTCGCACAGCCTaGACCATCCCTTTGATGCCCTCTGGGAAGAGGAAA +
Preference number: 6 (lower is better)
Translates to: RGAVPSAISRTA*TIPLMPSGKRK
Trigger: TTTCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGGGCACAGCCCCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 72 bp GGACGATGGGCTCCTGGGATGGGTAGAGCTTCTCCCTaGGCCACCAGTCCTGAAGTGTTGAGTGTCGAGTTG +
Preference number: 6 (lower is better)
Translates to: GRWAPGMGRASP*ATSPEVLSVEL
Trigger: CAACTCGACACTCAACACTTCAGGACTGGTGGCTCAGGGAGAAGCTCTACCCATCCCAGGAGCCCATCGTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 72 bp TCCATGGGTATGAACTGGCTGCAGAAGGGGAGCACGTaGAGTTCTGCACCCAGAGCCTGGTACTTGGCCACG +
Preference number: 6 (lower is better)
Translates to: SMGMNWLQKGST*SSAPRAWYLAT
Trigger: CGTGGCCAAGTACCAGGCTCTGGGTGCAGAACTCAACGTGCTCCCCTTCTGCAGCCAGTTCATACCCATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS CAA 72 bp TCCTCGGTCAGCTCCAGGGCACTGCTAGCAGACCCCTaGAAGAACTGGGAGGCTGGCATCATCTTGCCATCT +
Preference number: 6 (lower is better)
Translates to: SSVSSRALLADP*KNWEAGIILPS
Trigger: AGATGGCAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTCTGCTAGCAGTGCCCTGGAGCTGACCGAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 72 bp GCACCTGGCACCTTGTCATTCCCACGGATCCAGTTGTaGATGGCCTCTGCTGGCTGGTCCCAGTTGATCATG +
Preference number: 6 (lower is better)
Translates to: APGTLSFPRIQL*MASAGWSQLIM
Trigger: CATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAGGTGCCAGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 72 bp CCTCTGCAATCAGTCGCACAGCCTGAACCATCCCTTTaGTGCCCTCTGGGAAGAGGAAACGGTTGTACAGCG +
Preference number: 6 (lower is better)
Translates to: PLQSVAQPEPSL*CPLGRGNGCTA
Trigger: CGCTGTACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGGATGGTTCAGGCTGTGCGACTGATTGCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS GCA 72 bp CTCACGGTGTCATCTGGAAGCACGTCACACTCCTTCTaGAGCAGAAGGTCACCAGTGTCCAGACCGTCATCA +
Preference number: 6 (lower is better)
Translates to: LTVSSGSTSHSF*SRRSPVSRPSS
Trigger: TGATGACGGTCTGGACACTGGTGACCTTCTGCTGCAGAAGGAGTGTGACGTGCTTCCAGATGACACCGTGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS CCA 72 bp GAGGAAACGGTTGTACAGCGTGCTCACGGTGTCATCTaGAAGCACGTCACACTCCTTCTGCAGCAGAAGGTC +
Preference number: 6 (lower is better)
Translates to: EETVVQRAHGVI*KHVTLLLQQKV
Trigger: GACCTTCTGCTGCAGAAGGAGTGTGACGTGCTTCCAGATGACACCGTGAGCACGCTGTACAACCGTTTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 72 bp ACCATCCCTTTGATGCCCTCTGGGAAGAGGAAACGGTaGTACAGCGTGCTCACGGTGTCATCTGGAAGCACG +
Preference number: 6 (lower is better)
Translates to: TIPLMPSGKRKR*YSVLTVSSGST
Trigger: CGTGCTTCCAGATGACACCGTGAGCACGCTGTACAACCGTTTCCTCTTCCCAGAGGGCATCAAAGGGATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 72 bp GCCCAGAAGATAGTGAAGCCTCCTTTCTTATCTCCATaGATGAGGGTCCAGTTGATGGCTGAGGCCCCTCGG +
Preference number: 6 (lower is better)
Translates to: AQKIVKPPFLSP*MRVQLMAEAPR
Trigger: CCGAGGGGCCTCAGCCATCAACTGGACCCTCATTCATGGAGATAAGAAAGGAGGCTTCACTATCTTCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000203111.2
ENSMUST00000204796.3
CDS GCA 72 bp CTTGTCATTCCCACGGATCCAGTTGTGAATGGCCTCTaGTGGCTGGTCCCAGTTGATCATGGCTGTCTCCTT +
Preference number: 6 (lower is better)
Translates to: LVIPTDPVVNGL*WLVPVDHGCLL
Trigger: AAGGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGACAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 90 bp ACCAGCAACATTCTATCATCATTCCCAAAGAGGATGAGTCCCGCTTaGGTGACTAGGCCTGGACGATGGGCTCCTGGGATGGGTAGAGCT +
Preference number: 6 (lower is better)
Translates to: TSNILSSFPKRMSPA*VTRPGRWAPGMGRA
Trigger: AGCTCTACCCATCCCAGGAGCCCATCGTCCAGGCCTAGTCACCAAAGCGGGACTCATCCTCTTTGGGAATGATGATAGAATGTTGCTGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 90 bp GCTCCTGACTTGAAGAAATCTGTAGAGTCTTCTACCTCTGGGACATaGGGCAGAATTCGCATCCAAGAGCTCCGCACGGCCTCTGCTGTG +
Preference number: 6 (lower is better)
Translates to: APDLKKSVESSTSGT*GRIRIQELRTASAV
Trigger: CACAGCAGAGGCCGTGCGGAGCTCTTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCTACAGATTTCTTCAAGTCAGGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CCA 72 bp GTCATTCCCACGGATCCAGTTGTGAATGGCCTCTGCTaGCTGGTCCCAGTTGATCATGGCTGTCTCCTTTTT +
Preference number: 6 (lower is better)
Translates to: VIPTDPVVNGLC*LVPVDHGCLLF
Trigger: AAAAAGGAGACAGCCATGATCAACTGGGACCAGCCAGCAGAGGCCATTCACAACTGGATCCGTGGGAATGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 72 bp TTGAAGAAATCTGTAGAGTCTTCTACCTCTGGGACATaGGGCAGAATTCGCATCCAAGAGCTCCGCACGGCC +
Preference number: 6 (lower is better)
Translates to: LKKSVESSTSGT*GRIRIQELRTA
Trigger: GGCCGTGCGGAGCTCTTGGATGCGAATTCTGCCCAATGTCCCAGAGGTAGAAGACTCTACAGATTTCTTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS CAA 90 bp GCACTGCTAGCAGACCCCTTGAAGAACTGGGAGGCTGGCATCATCTaGCCATCTTCCAGCTGGATATTCTTCACCAGCAACATTCTATCA +
Preference number: 6 (lower is better)
Translates to: ALLADPLKNWEAGII*PSSSWIFFTSNILS
Trigger: TGATAGAATGTTGCTGGTGAAGAATATCCAGCTGGAAGATGGCAAGATGATGCCAGCCTCCCAGTTCTTCAAGGGGTCTGCTAGCAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
ENSMUST00000204796.3
CDS TCA 72 bp CTCCACCAGCCTCACAACATCTACGGATGCAGCTCCTaGCTTGAAGAAATCTGTAGAGTCTTCTACCTCTGG +
Preference number: 6 (lower is better)
Translates to: LHQPHNIYGCSS*LEEICRVFYLW
Trigger: CCAGAGGTAGAAGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTAGATGTTGTGAGGCTGGTGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8
CDS CAA 72 bp ACCAGCCTCACAACATCTACGGATGCAGCTCCTGACTaGAAGAAATCTGTAGAGTCTTCTACCTCTGGGACA +
Preference number: 6 (lower is better)
Translates to: TSLTTSTDAAPD*KKSVESSTSGT
Trigger: TGTCCCAGAGGTAGAAGACTCTACAGATTTCTTCAAGTCAGGAGCTGCATCCGTAGATGTTGTGAGGCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000032175.11
ENSMUST00000130418.8