Pregenerated sensors for ALDH1B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035561Ensembl transcript IDs: ENSMUST00000044384.5, ENSMUST00000172750.2
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTaGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGA | + |
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Preference number: 1 (lower is better) Translates to: TLHWELRLKSDFALH*LDVTELQDRAGPPR Trigger: TCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 90 bp | TTATGGAGACTCCTAAGGCTTCTTGGCTATAACTCATCAGAGAGGTaGGACCGAGGGATGAAATGGGCTGCACTCTGGGCCCAGCCACCG | + |
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Preference number: 1 (lower is better) Translates to: LWRLLRLLGYNSSER*DRGMKWAALWAQPP Trigger: CGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCTGATGAGTTATAGCCAAGAAGCCTTAGGAGTCTCCATAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 90 bp | CATCACTCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATaGAGACTCCTAAGGCTTCTTGGCTATAACTCATCAGAGAGGTGG | + |
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Preference number: 1 (lower is better) Translates to: HHSFLWPVSGFEYAL*RLLRLLGYNSSERW Trigger: CCACCTCTCTGATGAGTTATAGCCAAGAAGCCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGAGTGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 90 bp | ACCGTCTCTGCTTTAAGTAGAAAAGCTCTGGCTGGACTACTTTATTaGTTGACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAA | + |
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Preference number: 1 (lower is better) Translates to: TVSALSRKALAGLLY*LTLLVTLHWELRLK Trigger: TTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTCAACCAATAAAGTAGTCCAGCCAGAGCTTTTCTACTTAAAGCAGAGACGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR-3UTR TCA 90 bp | TCCTTCACTGATCGTTCTGTTTTTGAGGATCCCTGTGGCCCCGGGATCAGCCCAACTGGGAACTCAGGCTaGAATCAGATTTTGCCCTCC | + |
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Preference number: 2 (lower is better) Translates to: SFTDRSVFEDPCGPGISPTGNSG*NQILPS Trigger: GGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGT...TGGGCTGATCCCGGGGCCACAGGGATCCTCAAAAACAGAACGATCAGTGAAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR-3UTR CCA 90 bp | CATAATTTGATAGTAAATCAGTATGACTGCAAAGTTGTCCAACTGTGTCCATTGAACTCATCAGAGAGGTaGGACCGAGGGATGAAATGG | + |
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Preference number: 2 (lower is better) Translates to: HNLIVNQYDCKVVQLCPLNSSER*DRGMKW Trigger: CCATTTCATCCCTCGGTCCCACCTCTCTGATGAGTT...CAATGGACACAGTTGGACAACTTTGCAGTCATACTGATTTACTATCAAATTATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR-3UTR CCA 90 bp | TCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGACTCCTAAGGGCTGGACTACTTTATTaGTTGACACTTCTTGTAACA | + |
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Preference number: 2 (lower is better) Translates to: SFLWPVSGFEYALWRLLRAGLLY*LTLLVT Trigger: TGTTACAAGAAGTGTCAACCAATAAAGTAGTCCAGC...CCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR TCA 72 bp | TTGGCTATAACTCATCAGAGAGGTGGGACCGAGGGATaGAATGGGCTGCACTCTGGGCCCAGCCACCGTCTC | + |
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Preference number: 3 (lower is better) Translates to: LAITHQRGGTEG*NGLHSGPSHRL Trigger: GAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCTGATGAGTTATAGCCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 72 bp | TGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTaGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: WELRLKSDFALH*LDVTELQDRAG Trigger: CCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 72 bp | TATAACTCATCAGAGAGGTGGGACCGAGGGATGAAATaGGCTGCACTCTGGGCCCAGCCACCGTCTCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: YNSSERWDRGMK*AALWAQPPSLL Trigger: AAGCAGAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCTGATGAGTTATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR GCA 72 bp | AACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTaGCCTCCACTGGCTAGATGTCACGGAGCTGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: NTSLGTQAEIRF*PPLARCHGAAG Trigger: TCCTGCAGCTCCGTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| 3UTR CCA 72 bp | TTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATaGAGACTCCTAAGGCTTCTTGGCTATAACTCATCA | + |
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Preference number: 3 (lower is better) Translates to: FLWPVSGFEYAL*RLLRLLGYNSS Trigger: TGATGAGTTATAGCCAAGAAGCCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATCTGAGGCATCCATCCTaGGCCATGGGGACCCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANLRHPS*AMGTPG Trigger: GCCTGGGGTCCCCATGGCGCAGGATGGATGCCTCAG...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | AGAGAGGTGGGACCGAGGGATGAAATGGGCTGCACTCTGGGCCCAGCCACCGTCCGTCTGCCAGCACAATaGTGGGGCTCTTCCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: REVGPRDEMGCTLGPATVRLPAQ*WGSSHP Trigger: TGGGTGGGAAGAGCCCCAGCATTGTGCTGGCAGACG...GACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATAGCCAGATCCACATCTaGCCGGTCACCTTCGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANSQIHI*PVTFGH Trigger: GTGGCCGAAGGTGACCGGGCAGATGTGGATCTGGCT...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATCTGCCAGCACAATGCTaGGGCTCTTCCCACCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANLPAQC*GSSHPA Trigger: AGCTGGGTGGGAAGAGCCCCAGCATTGTGCTGGCAG...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATTCGCCAGCTGCCTTCTaGATCAGGTGGCCTACCTCA | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANSPAAF*IRWPTS Trigger: TGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCGA...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATCTGGCTCATGTCGGGTaGAGCAGAAATGCTCACCAT | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANLAHVG*SRNAHH Trigger: ATGGTGAGCATTTCTGCTTCACCCGACATGAGCCAG...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACCCATGTGCTGAGCGATaGCAGCTCCCGCCGTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SLGTQAEIRFCPPLARCHPCAER*QLPPWG Trigger: GCCCCACGGCGGGAGCTGCCATCGCTCAGCACATGG...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CTGGCTAGATGTCACGGAGCTGCAGGACAGGGCTGGGCCTCCAAGATGGCCAATCGGGTGAAGCAGAAATaGTCACCATCCATAGGGATG | + |
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Preference number: 4 (lower is better) Translates to: LARCHGAAGQGWASKMANRVKQK*SPSIGM Trigger: CATCCCTATGGATGGTGAGCATTTCTGCTTCACCCG...ATTGGCCATCTTGGAGGCCCAGCCCTGTCCTGCAGCTCCGTGACATCTAGCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | TCATCAGAGAGGTGGGACCGAGGGATGAAATGGGCTGCACTCTGGGCCCAGCCACTTAAAGCCTCCGAATaGCGTGTGGCAGGTGACAAT | + |
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Preference number: 4 (lower is better) Translates to: SSERWDRGMKWAALWAQPLKASE*RVAGDN Trigger: ATTGTCACCTGCCACACGCCATTCGGAGGCTTTAAG...TGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCTGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | GACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCAGCCGGCCCCGCTCTaGGGCATCCATCCTGCGCCA | + |
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Preference number: 4 (lower is better) Translates to: DTSCNTSLGTQAEIRFCPQPAPL*GIHPAP Trigger: TGGCGCAGGATGGATGCCTCAGAGCGGGGCCGGCTG...AGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | CAGCCCATCACTCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGACCACAGTGTTGCCCGTaGCGAGTGCCGGGGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: QPITPFYGQSVVLNMPYGPQCCP*RVPGPA Trigger: AGCTGGCCCCGGCACTCGCCACGGGCAACACTGTGG...TCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGAGTGATGGGCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | CAGCCCATCACTCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGATGTCCAGGTCTCGGGTaGACACAGCCGCAGCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: QPITPFYGQSVVLNMPYGCPGLG*TQPQPG Trigger: GCCTGGCTGCGGCTGTGTTCACCCGAGACCTGGACA...TCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGAGTGATGGGCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CGTTCTGTTTTTGAGGATCCCTGTGGCCCCGGGATCAGCCCATCACTCCTTTTTGTTCGGGAGAGCAGCTaGTGTAGAGTAAGAGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: RSVFEDPCGPGISPSLLFVRESS*CRVRGS Trigger: ACTACCTCTTACTCTACAGCAGCTGCTCTCCCGAAC...AAAAAGGAGTGATGGGCTGATCCCGGGGCCACAGGGATCCTCAAAAACAGAACG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACGCCACAGAGAAGCTTTaGCCCTTCCTTCTGTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLGTQAEIRFCPPLARCHATEKL*PFLLSQ Trigger: CTGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGC...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | TCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGACTCCTAAGGTGCTCCTTGTCCACCTaGGGTCCCTGCTGGGTGTCC | + |
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Preference number: 4 (lower is better) Translates to: SFLWPVSGFEYALWRLLRCSLST*GPCWVS Trigger: GGACACCCAGCAGGGACCTCAGGTGGACAAGGAGCA...CCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | TCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGCTTGCAGGGCCTGCGTaGAGTAGATGGCCTTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SCNTSLGTQAEIRFCPPLLAGPA*SRWPCP Trigger: TGGACAAGGCCATCTACTTCACGCAGGCCCTGCAAG...CAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | TTGGTTGACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTATCCATCCTGCGCCATaGGGACCCCAGGCGGAAGGC | + |
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Preference number: 4 (lower is better) Translates to: LVDTSCNTSLGTQAEIRFIHPAP*GPQAEG Trigger: GCCTTCCGCCTGGGGTCCCCATGGCGCAGGATGGAT...AAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTCAACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACTTCCAAGGGATTATCTaGCCACAGACACCCACTGGC | + |
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Preference number: 4 (lower is better) Translates to: SLGTQAEIRFCPPLARCHFQGII*PQTPTG Trigger: GCCAGTGGGTGTCTGTGGCCAGATAATCCCTTGGAA...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | GATGAAATGGGCTGCACTCTGGGCCCAGCCACCGTCTCTGCTTTAAGTAGAAAACCACTTTCCTCTGCTTaGCCTTCTCCACAGTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: DEMGCTLGPATVSALSRKPLSSA*PSPQFS Trigger: AGAGAACTGTGGAGAAGGCCAAGCAGAGGAAAGTGG...TTTTCTACTTAAAGCAGAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CAGCCCATCACTCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGCAGAGAGTGGGGTCTaGTCTGCCACCTTCATGACC | + |
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Preference number: 4 (lower is better) Translates to: QPITPFYGQSVVLNMPYGAESGV*SATFMT Trigger: GGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGC...TCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGAGTGATGGGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | GACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCTCTGGGTTTGGGATTaGGTTCGGGAGAGCAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: DTSCNTSLGTQAEIRFCPLWVWD*VRESSC Trigger: GCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAG...AGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACGCCCTGCATGACCAGTaGGAAGTTCCAAGGGATTAT | + |
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Preference number: 4 (lower is better) Translates to: SLGTQAEIRFCPPLARCHALHDQ*EVPRDY Trigger: ATAATCCCTTGGAACTTCCCACTGGTCATGCAGGGC...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | GATGAAATGGGCTGCACTCTGGGCCCAGCCACCGTCTCTGCTTTAAGTAGAAAAGAAACTCACGGTAGATaGACTCTTCCACGAATGTCC | + |
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Preference number: 4 (lower is better) Translates to: DEMGCTLGPATVSALSRKETHGR*TLPRMS Trigger: GGACATTCGTGGAAGAGTCCATCTACCGTGAGTTTC...TTTTCTACTTAAAGCAGAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | TCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGAGCACTGGCCCATGTTaGAGAAAAGGGCTTCGTGAC | + |
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Preference number: 4 (lower is better) Translates to: SCNTSLGTQAEIRFCPPLSTGPC*RKGLRD Trigger: GTCACGAAGCCCTTTTCTTCAACATGGGCCAGTGCT...CAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACATGGCGTGTGGCAGGTaGCAATGTTATAGGTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SLGTQAEIRFCPPLARCHMACGR*QCYRCS Trigger: TGAACACCTATAACATTGTCACCTGCCACACGCCAT...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | AAAGCTCTGGCTGGACTACTTTATTGGTTGACACTTCTTGTAACACTTCACTGGGAGTGGGGTCTGCTCTaGCACCTTCATGACCACAGT | + |
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Preference number: 4 (lower is better) Translates to: KALAGLLYWLTLLVTLHWEWGLL*HLHDHS Trigger: ACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTC...CCAGTGAAGTGTTACAAGAAGTGTCAACCAATAAAGTAGTCCAGCCAGAGCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | TCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGACTCCTAAGGGTTAGACTCGCCAGCTaGCTTCTGAATCAGGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SFLWPVSGFEYALWRLLRVRLAS*LLNQVA Trigger: GGCCACCTGATTCAGAAGGCAGCTGGCGAGTCTAAC...CCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CCA 90 bp | GACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTGCAAATCTCTGGGTTTaGGATTGGGTTCGGGAGAGC | + |
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Preference number: 4 (lower is better) Translates to: DTSCNTSLGTQAEIRFCPANLWV*DWVRES Trigger: GCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGC...AGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | TCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGACTCCTAAGGTTGCTGACCGCATCATaGCACTCGTTGTTGATGAAC | + |
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Preference number: 4 (lower is better) Translates to: SFLWPVSGFEYALWRLLRLLTAS*HSLLMN Trigger: GTTCATCAACAACGAGTGGCATGATGCGGTCAGCAA...CCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CATAATTTGATAGTAAATCAGTATGACTGCAAAGTTGTCCAACTGTGTCCATTGCTCCATGTCAGCGTCTaGCAGCACAATGCTGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: HNLIVNQYDCKVVQLCPLLHVSV*QHNAGA Trigger: AGCCCCAGCATTGTGCTGGCAGACGCTGACATGGAG...CAATGGACACAGTTGGACAACTTTGCAGTCATACTGATTTACTATCAAATTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR TCA 90 bp | CATAATTTGATAGTAAATCAGTATGACTGCAAAGTTGTCCAACTGTGTCCATTGCCTCAGTGGAGCCCGTaGAGGCGACTTTATCCACAT | + |
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Preference number: 4 (lower is better) Translates to: HNLIVNQYDCKVVQLCPLPQWSP*RRLYPH Trigger: ATGTGGATAAAGTCGCCTTCACGGGCTCCACTGAGG...CAATGGACACAGTTGGACAACTTTGCAGTCATACTGATTTACTATCAAATTATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR GCA 90 bp | CATAATTTGATAGTAAATCAGTATGACTGCAAAGTTGTCCAACTGTGTCCATTGAACTTGAACAGAGGCTaGACGGGCCCAAAGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: HNLIVNQYDCKVVQLCPLNLNRG*TGPKIS Trigger: GGAGATCTTTGGGCCCGTGCAGCCTCTGTTCAAGTT...CAATGGACACAGTTGGACAACTTTGCAGTCATACTGATTTACTATCAAATTATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS TCA 90 bp | AGGCCAAGTACAGAGCAGAGAGTGGGGTCTGCTCTGCCACCTTCATaGCCACAGTGTTGCCCGTGGCGAGTGCCGGGGCCAGCTTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: RPSTEQRVGSALPPS*PQCCPWRVPGPASS Trigger: GCTGGAAGCTGGCCCCGGCACTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | GAAGAAGCCGCGCTCCCCCAAACGCTCCCCGCCACAGAGAAGCTTTaGCCCTTCCTTCTGTCCCAGCCGGATGTAGCCCAGGATTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: EEAALPQTLPATEKL*PFLLSQPDVAQDSF Trigger: GAACGAATCCTGGGCTACATCCGGCTGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGCGGGGAGCGTTTGGGGGAGCGCGGCTTCTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | ACCACAGTGTTGCCCGTGGCGAGTGCCGGGGCCAGCTTCCAGCCCTaGATGACCAGTGGGAAGTTCCAAGGGATTATCTGGCCACAGACA | + |
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Preference number: 5 (lower is better) Translates to: TTVLPVASAGASFQP*MTSGKFQGIIWPQT Trigger: TGTCTGTGGCCAGATAATCCCTTGGAACTTCCCACTGGTCATGCAGGGCTGGAAGCTGGCCCCGGCACTCGCCACGGGCAACACTGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | TTTGATGAGGGAGGCCAAGTACAGAGCAGAGAGTGGGGTCTGCTCTaGCACCTTCATGACCACAGTGTTGCCCGTGGCGAGTGCCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: FDEGGQVQSREWGLL*HLHDHSVARGECRG Trigger: GCCCCGGCACTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCCCTCATCAAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | GCCTCTTTGATGAGGGAGGCCAAGTACAGAGCAGAGAGTGGGGTCTaGTCTGCCACCTTCATGACCACAGTGTTGCCCGTGGCGAGTGCC | + |
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Preference number: 5 (lower is better) Translates to: ASLMREAKYRAESGV*SATFMTTVLPVASA Trigger: GGCACTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCCCTCATCAAAGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | CAGGCGGAAGGCTTCTCGGGCTGCTTTTACAGCCAGATCCACATCTaGCCGGTCACCTTCGGCCACATGCCCAATGACCTCACCTGTAGT | + |
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Preference number: 5 (lower is better) Translates to: QAEGFSGCFYSQIHI*PVTFGHMPNDLTCS Trigger: ACTACAGGTGAGGTCATTGGGCATGTGGCCGAAGGTGACCGGGCAGATGTGGATCTGGCTGTAAAAGCAGCCCGAGAAGCCTTCCGCCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS CCA 90 bp | AAACCCCGCCTCTTTGATGAGGGAGGCCAAGTACAGAGCAGAGAGTaGGGTCTGCTCTGCCACCTTCATGACCACAGTGTTGCCCGTGGC | + |
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Preference number: 5 (lower is better) Translates to: KPRLFDEGGQVQSRE*GLLCHLHDHSVARG Trigger: GCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCCCTCATCAAAGAGGCGGGGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | CCCCCGGGTCCCAGCCAAACACTGATCGATGTGGGGCCGGCGTCCTTCACTGATGCATCATGCCACTCGTaGTTGATGAACAGCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: PPGPSQTLIDVGPASFTDASCHS*LMNSLL Trigger: CAACAAGCTGTTCATCAACAACGAGTGGCATGATGC...ATCAGTGAAGGACGCCGGCCCCACATCGATCAGTGTTTGGCTGGGACCCGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 90 bp | GTTGTAGCAAATCTCTGGGTTTGGGATTGGGTTCGGGAGAGCAGCTaGTGTAGAGTAAGAGGTAGTCCTGCCCTGGAGGCAGAGGAGCCG | + |
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Preference number: 5 (lower is better) Translates to: VVANLWVWDWVRESS*CRVRGSPALEAEEP Trigger: CGGCTCCTCTGCCTCCAGGGCAGGACTACCTCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS-3UTR CAA 90 bp | GATGAAATGGGCTGCACTCTGGGCCCAGCCACCGTCTCTGCTTTAAGTAGAAAATTCATGACCACAGTGTaGCCCGTGGCGAGTGCCGGG | + |
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Preference number: 5 (lower is better) Translates to: DEMGCTLGPATVSALSRKFMTTV*PVASAG Trigger: CCCGGCACTCGCCACGGGCAACACTGTGGTCATGAA...TTTTCTACTTAAAGCAGAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | TCATCAGAGAGGTGGGACCGAGGGATGAAATGGGCTGCACTCTGGGCCCAGCCACCATACCTGGTGTTGTaGGCTCTCTGGATTACTTCC | + |
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Preference number: 5 (lower is better) Translates to: SSERWDRGMKWAALWAQPPYLVL*ALWITS Trigger: GGAAGTAATCCAGAGAGCCAACAACACCAGGTATGG...TGGCTGGGCCCAGAGTGCAGCCCATTTCATCCCTCGGTCCCACCTCTCTGATGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | CGTTCTGTTTTTGAGGATCCCTGTGGCCCCGGGATCAGCCCATCACTCCTTTTTGTCTTACCATGCCACTaGTCAGCCCAGCCAGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: RSVFEDPCGPGISPSLLFVLPCH*SAQPAK Trigger: CTTCGCTGGCTGGGCTGACAAGTGGCATGGTAAGAC...AAAAAGGAGTGATGGGCTGATCCCGGGGCCACAGGGATCCTCAAAAACAGAACG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | CGTTCTGTTTTTGAGGATCCCTGTGGCCCCGGGATCAGCCCATCACTCCTTTTTGTGGGGAAGGTCTTTTaGCTGACCGCATCATGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RSVFEDPCGPGISPSLLFVGKVF*LTASCH Trigger: GTGGCATGATGCGGTCAGCAAAAAGACCTTCCCCAC...AAAAAGGAGTGATGGGCTGATCCCGGGGCCACAGGGATCCTCAAAAACAGAACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | TCCTTCACTGATCGTTCTGTTTTTGAGGATCCCTGTGGCCCCGGGATCAGCCCATCGATCTTCTTGAACTaGAACAGAGGCTGCACGGGC | + |
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Preference number: 5 (lower is better) Translates to: SFTDRSVFEDPCGPGISPSIFLN*NRGCTG Trigger: GCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGA...TGGGCTGATCCCGGGGCCACAGGGATCCTCAAAAACAGAACGATCAGTGAAGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CCA 90 bp | GACCAGTGGGAAGTTCCAAGGGATTATCTGGCCACAGACACCCACTaGCTCATGTCGGGTGAAGCAGAAATGCTCACCATCCATAGGGAT | + |
|
Preference number: 5 (lower is better) Translates to: DQWEVPRDYLATDTH*LMSGEAEMLTIHRD Trigger: ATCCCTATGGATGGTGAGCATTTCTGCTTCACCCGACATGAGCCAGTGGGTGTCTGTGGCCAGATAATCCCTTGGAACTTCCCACTGGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | TCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGCTAGATGTCACCCCAGCTCCCTGCCATaGCCAGATTCCTTAAAGCCT | + |
|
Preference number: 5 (lower is better) Translates to: SLGTQAEIRFCPPLARCHPSSLP*PDSLKP Trigger: AGGCTTTAAGGAATCTGGCAATGGCAGGGAGCTGGG...GTGACATCTAGCCAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | TCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGGGAAACCCCGCCTCTTaGATGAGGGAGGCCAAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: SCNTSLGTQAEIRFCPPLGNPAS*MREAKY Trigger: GTACTTGGCCTCCCTCATCAAAGAGGCGGGGTTTCC...CAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | GATGAAATGGGCTGCACTCTGGGCCCAGCCACCGTCTCTGCTTTAAGTAGAAAAAGGCCATACCTGGTGTaGTTGGCTCTCTGGATTACT | + |
|
Preference number: 5 (lower is better) Translates to: DEMGCTLGPATVSALSRKRPYLV*LALWIT Trigger: AGTAATCCAGAGAGCCAACAACACCAGGTATGGCCT...TTTTCTACTTAAAGCAGAGACGGTGGCTGGGCCCAGAGTGCAGCCCATTTCATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CCA 90 bp | GTTGTTGATGAACAGCTTGTTGTAGCAAATCTCTGGGTTTGGGATTaGGTTCGGGAGAGCAGCTGCTGTAGAGTAAGAGGTAGTCCTGCC | + |
|
Preference number: 5 (lower is better) Translates to: VVDEQLVVANLWVWD*VRESSCCRVRGSPA Trigger: GGCAGGACTACCTCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAACAAGCTGTTCATCAACAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS CCA 90 bp | CCACTCGTTGTTGATGAACAGCTTGTTGTAGCAAATCTCTGGGTTTaGGATTGGGTTCGGGAGAGCAGCTGCTGTAGAGTAAGAGGTAGT | + |
|
Preference number: 5 (lower is better) Translates to: PLVVDEQLVVANLWV*DWVRESSCCRVRGS Trigger: ACTACCTCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAACAAGCTGTTCATCAACAACGAGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS-3UTR CAA 90 bp | AAAGCTCTGGCTGGACTACTTTATTGGTTGACACTTCTTGTAACACTTCACTGGTCTCTGGGTTTGGGATaGGGTTCGGGAGAGCAGCTG | + |
|
Preference number: 5 (lower is better) Translates to: KALAGLLYWLTLLVTLHWSLGLG*GSGEQL Trigger: CAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGA...CCAGTGAAGTGTTACAAGAAGTGTCAACCAATAAAGTAGTCCAGCCAGAGCTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | GACACTTCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTTCCAGGGTGACTCTCTaGAGGTTAGACTCGCCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: DTSCNTSLGTQAEIRFCPSRVTL*RLDSPA Trigger: AGCTGGCGAGTCTAACCTCAAGAGAGTCACCCTGGA...AGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGAAGTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS-3UTR CAA 90 bp | TCCTTTTTATGGCCAGTCAGTGGTTTTGAATATGCCTTATGGAGACTCCTAAGGCGCCACAGAGAAGCTTaGCCCCTTCCTTCTGTCCCA | + |
|
Preference number: 5 (lower is better) Translates to: SFLWPVSGFEYALWRLLRRHREA*PLPSVP Trigger: TGGGACAGAAGGAAGGGGCAAAGCTTCTCTGTGGCG...CCTTAGGAGTCTCCATAAGGCATATTCAAAACCACTGACTGGCCATAAAAAGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CCA 90 bp | ATCATGCCACTCGTTGTTGATGAACAGCTTGTTGTAGCAAATCTCTaGGTTTGGGATTGGGTTCGGGAGAGCAGCTGCTGTAGAGTAAGA | + |
|
Preference number: 5 (lower is better) Translates to: IMPLVVDEQLVVANL*VWDWVRESSCCRVR Trigger: TCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAACAAGCTGTTCATCAACAACGAGTGGCATGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS-3UTR CAA 90 bp | TCTTGTAACACTTCACTGGGAACTCAGGCTGAAATCAGATTTTGCCCTCCACTGACTTCCTCGATCTTCTaGAACTTGAACAGAGGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SCNTSLGTQAEIRFCPPLTSSIF*NLNRGC Trigger: GCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGT...CAGTGGAGGGCAAAATCTGATTTCAGCCTGAGTTCCCAGTGAAGTGTTACAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | TGCCACCTTCATGACCACAGTGTTGCCCGTGGCGAGTaGCGGGGCCAGCTTCCAGCCCTGCATGACCAGTGG | + |
|
Preference number: 6 (lower is better) Translates to: CHLHDHSVARGE*RGQLPALHDQW Trigger: CCACTGGTCATGCAGGGCTGGAAGCTGGCCCCGGCACTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS TCA 72 bp | ACAGAGCAGAGAGTGGGGTCTGCTCTGCCACCTTCATaGCCACAGTGTTGCCCGTGGCGAGTGCCGGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TEQRVGSALPPS*PQCCPWRVPGP Trigger: TGGCCCCGGCACTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | GGAGGCCAAGTACAGAGCAGAGAGTGGGGTCTGCTCTaGCACCTTCATGACCACAGTGTTGCCCGTGGCGAG | + |
|
Preference number: 6 (lower is better) Translates to: GGQVQSREWGLL*HLHDHSVARGE Trigger: CTCGCCACGGGCAACACTGTGGTCATGAAGGTGGCAGAGCAGACCCCACTCTCTGCTCTGTACTTGGCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | GGCTTCTCGGGCTGCTTTTACAGCCAGATCCACATCTaGCCGGTCACCTTCGGCCACATGCCCAATGACCTC | + |
|
Preference number: 6 (lower is better) Translates to: GFSGCFYSQIHI*PVTFGHMPNDL Trigger: GAGGTCATTGGGCATGTGGCCGAAGGTGACCGGGCAGATGTGGATCTGGCTGTAAAAGCAGCCCGAGAAGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS GCA 72 bp | GTGACACTGATCTACGGCATGCTCCATGTCAGCGTCTaGCAGCACAATGCTGGGGCTCTTCCCACCCAGCTC | + |
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Preference number: 6 (lower is better) Translates to: VTLIYGMLHVSV*QHNAGALPTQL Trigger: GAGCTGGGTGGGAAGAGCCCCAGCATTGTGCTGGCAGACGCTGACATGGAGCATGCCGTAGATCAGTGTCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CAA 90 bp | GTGGCAGGTGACAATGTTATAGGTGTTCACCCACACCGTCCCAGCTaGCAGGGCCTGCGTGAAGTAGATGGCCTTGTCCAGGTCTCGGGT | + |
|
Preference number: 6 (lower is better) Translates to: VAGDNVIGVHPHRPS*QGLREVDGLVQVSG Trigger: ACCCGAGACCTGGACAAGGCCATCTACTTCACGCAGGCCCTGCAAGCTGGGACGGTGTGGGTGAACACCTATAACATTGTCACCTGCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | CTCCAGGGTGACTCTCTTGAGGTTAGACTCGCCAGCTaGCTTCTGAATCAGGTGGCCTACCTCAGTGGAGCC | + |
|
Preference number: 6 (lower is better) Translates to: LQGDSLEVRLAS*LLNQVAYLSGA Trigger: GGCTCCACTGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCGAGTCTAACCTCAAGAGAGTCACCCTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS TCA 72 bp | GTGACTCTCTTGAGGTTAGACTCGCCAGCTGCCTTCTaGATCAGGTGGCCTACCTCAGTGGAGCCCGTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: VTLLRLDSPAAF*IRWPTSVEPVK Trigger: CTTCACGGGCTCCACTGAGGTAGGCCACCTGATTCAGAAGGCAGCTGGCGAGTCTAACCTCAAGAGAGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | AATCTCTGGGTTTGGGATTGGGTTCGGGAGAGCAGCTaGTGTAGAGTAAGAGGTAGTCCTGCCCTGGAGGCA | + |
|
Preference number: 6 (lower is better) Translates to: NLWVWDWVRESS*CRVRGSPALEA Trigger: TGCCTCCAGGGCAGGACTACCTCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS CAA 72 bp | CGGGTGAACACAGCCGCAGCCAGGCCATACCTGGTGTaGTTGGCTCTCTGGATTACTTCCTCGATCTTCTTG | + |
|
Preference number: 6 (lower is better) Translates to: RVNTAAARPYLV*LALWITSSIFL Trigger: CAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAGGTATGGCCTGGCTGCGGCTGTGTTCACCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | CAGACACCCACTGGCTCATGTCGGGTGAAGCAGAAATaGTCACCATCCATAGGGATGGTCTTACCATGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: QTPTGSCRVKQK*SPSIGMVLPCH Trigger: GTGGCATGGTAAGACCATCCCTATGGATGGTGAGCATTTCTGCTTCACCCGACATGAGCCAGTGGGTGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CAA 90 bp | TCCAGGTCTCGGGTGAACACAGCCGCAGCCAGGCCATACCTGGTGTaGTTGGCTCTCTGGATTACTTCCTCGATCTTCTTGAACTTGAAC | + |
|
Preference number: 6 (lower is better) Translates to: SRSRVNTAAARPYLV*LALWITSSIFLNLN Trigger: GTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAGGTATGGCCTGGCTGCGGCTGTGTTCACCCGAGACCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CAA 90 bp | CTGGTGTTGTTGGCTCTCTGGATTACTTCCTCGATCTTCTTGAACTaGAACAGAGGCTGCACGGGCCCAAAGATCTCCTCCTTGGCGATC | + |
|
Preference number: 6 (lower is better) Translates to: LVLLALWITSSIFLN*NRGCTGPKISSLAI Trigger: GATCGCCAAGGAGGAGATCTTTGGGCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CAA 90 bp | AGGTCTCGGGTGAACACAGCCGCAGCCAGGCCATACCTGGTGTTGTaGGCTCTCTGGATTACTTCCTCGATCTTCTTGAACTTGAACAGA | + |
|
Preference number: 6 (lower is better) Translates to: RSRVNTAAARPYLVL*ALWITSSIFLNLNR Trigger: TCTGTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACACCAGGTATGGCCTGGCTGCGGCTGTGTTCACCCGAGACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS GCA 72 bp | ATTACTTCCTCGATCTTCTTGAACTTGAACAGAGGCTaGACGGGCCCAAAGATCTCCTCCTTGGCGATCCTC | + |
|
Preference number: 6 (lower is better) Translates to: ITSSIFLNLNRG*TGPKISSLAIL Trigger: GAGGATCGCCAAGGAGGAGATCTTTGGGCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CCA 72 bp | CTCCCTGCCATTGCCAGATTCCTTAAAGCCTCCGAATaGCGTGTGGCAGGTGACAATGTTATAGGTGTTCAC | + |
|
Preference number: 6 (lower is better) Translates to: LPAIARFLKASE*RVAGDNVIGVH Trigger: GTGAACACCTATAACATTGTCACCTGCCACACGCCATTCGGAGGCTTTAAGGAATCTGGCAATGGCAGGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CAA 72 bp | TTGGCTCTCTGGATTACTTCCTCGATCTTCTTGAACTaGAACAGAGGCTGCACGGGCCCAAAGATCTCCTCC | + |
|
Preference number: 6 (lower is better) Translates to: LALWITSSIFLN*NRGCTGPKISS Trigger: GGAGGAGATCTTTGGGCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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| CDS CCA 72 bp | GAACAGCTTGTTGTAGCAAATCTCTGGGTTTGGGATTaGGTTCGGGAGAGCAGCTGCTGTAGAGTAAGAGGT | + |
|
Preference number: 6 (lower is better) Translates to: EQLVVANLWVWD*VRESSCCRVRG Trigger: ACCTCTTACTCTACAGCAGCTGCTCTCCCGAACCCAATCCCAAACCCAGAGATTTGCTACAACAAGCTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000044384.5 ENSMUST00000172750.2 |
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| CDS CAA 72 bp | GTGTTGTTGGCTCTCTGGATTACTTCCTCGATCTTCTaGAACTTGAACAGAGGCTGCACGGGCCCAAAGATC | + |
|
Preference number: 6 (lower is better) Translates to: VLLALWITSSIF*NLNRGCTGPKI Trigger: GATCTTTGGGCCCGTGCAGCCTCTGTTCAAGTTCAAGAAGATCGAGGAAGTAATCCAGAGAGCCAACAACAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044384.5 |
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