RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH1A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015134

Ensembl transcript IDs: ENSMUST00000015278.15, ENSMUST00000174209.8, ENSMUST00000174215.2, ENSMUST00000174701.2

Found 168 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGAGGAAAGAAGGTGGATGGAATATTGCTTGTCTCCGACAGGGCTaGGAGCCCCGATTCACGCCCCACATTCTCTACCTCACACTGGTT +
Preference number: 1 (lower is better)
Translates to: GRKEGGWNIACLRQG*EPRFTPHILYLTLV
Trigger: AACCAGTGTGAGGTAGAGAATGTGGGGCGTGAATCGGGGCTCTCAGCCCTGTCGGAGACAAGCAATATTCCATCCACCTTCTTTCCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 90 bp AAACCATTGAACTCCAGTAGATCGGGTGTCCAGAAGAGAGGGTCCTaGGAAGCTGAGCACTGTCATCCTGCTTTCTGCTCGTGGCAGGCT +
Preference number: 1 (lower is better)
Translates to: KPLNSSRSGVQKRGS*EAEHCHPAFCSWQA
Trigger: AGCCTGCCACGAGCAGAAAGCAGGATGACAGTGCTCAGCTTCCCAGGACCCTCTCTTCTGGACACCCGATCTACTGGAGTTCAATGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 90 bp ATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACT +
Preference number: 1 (lower is better)
Translates to: ILSRMVVSHHVVAGI*TLDLWKSSRVLLPT
Trigger: AGTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR CCA 90 bp GAGTCAGATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTT +
Preference number: 1 (lower is better)
Translates to: ESDPVTDGCEPPCGC*DLNSGPLEEQSGAL
Trigger: AAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATCTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR TCA 90 bp TCAGACACACCAGAAGAGGGAGTCAGATCCTGTCACGGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGA +
Preference number: 1 (lower is better)
Translates to: SDTPEEGVRSCHGWL*ATMWLLGFELWTFG
Trigger: TCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATCTGACTCCCTCTTCTGGTGTGTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR TCA 90 bp GGCGTGCCCGTTATTGAATGTGGTAGAAACGGGTATTTGAAAAAGTaGATGGTGGCTCTGAGGGTCAAATGTGAGGCTCCATTGCCCAGG +
Preference number: 1 (lower is better)
Translates to: GVPVIECGRNGYLKK*MVALRVKCEAPLPR
Trigger: CCTGGGCAATGGAGCCTCACATTTGACCCTCAGAGCCACCATTCACTTTTTCAAATACCCGTTTCTACCACATTCAATAACGGGCACGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 90 bp CATCATATGCATACATCAAAGAGGAAAGGAAAACATGTTTTAACATaGCTGAGGTACCCAGGTCACTTGGTGGTCCCTTGTGGGATCCAG +
Preference number: 1 (lower is better)
Translates to: HHMHTSKRKGKHVLT*LRYPGHLVVPCGIQ
Trigger: CTGGATCCCACAAGGGACCACCAAGTGACCTGGGTACCTCAGTCATGTTAAAACATGTTTTCCTTTCCTCTTTGATGTATGCATATGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 90 bp CGTGGAAGACCATCTCATAACTATAGGGCAAACTCTTTGGGATGTTaGTTTGGTCATTCCAAAGTCAGGATTGTTTTCAAGGTGAACCCC +
Preference number: 1 (lower is better)
Translates to: RGRPSHNYRANSLGC*FGHSKVRIVFKVNP
Trigger: GGGGTTCACCTTGAAAACAATCCTGACTTTGGAATGACCAAATCAACATCCCAAAGAGTTTGCCCTATAGTTATGAGATGGTCTTCCACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 90 bp GCCTATGTCGTGGAAGACCATCTCATAACTATAGGGCAAACTCTTTaGGATGTTGATTTGGTCATTCCAAAGTCAGGATTGTTTTCAAGG +
Preference number: 1 (lower is better)
Translates to: AYVVEDHLITIGQTL*DVDLVIPKSGLFSR
Trigger: CCTTGAAAACAATCCTGACTTTGGAATGACCAAATCAACATCCCAAAGAGTTTGCCCTATAGTTATGAGATGGTCTTCCACGACATAGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCCAGCTGTCCAGCTTTTaGGGAAGAAGCCGGCCTGTT +
Preference number: 2 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPQLSSF*GRSRPV
Trigger: AACAGGCCGGCTTCTTCCTCAAAAGCTGGACAGCTG...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCAGGGTCCTGGGAAGCTaGGCACTGTCATCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPRVLGS*ALSSCF
Trigger: AAAGCAGGATGACAGTGCTCAGCTTCCCAGGACCCT...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CAA 90 bp GATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCAC +
Preference number: 2 (lower is better)
Translates to: DPVTDGCEPPCGCWD*NSGPLEEQSGALTH
Trigger: GTGGGTAAGAGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR-3UTR GCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATGTGGCAGGCTGGAGTTaGCACGGTCAGCTGTCCAGC +
Preference number: 2 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHVAGWS*HGQLSS
Trigger: GCTGGACAGCTGACCGTGGCAACTCCAGCCTGCCAC...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CAA 90 bp TATGGTAGTATAAGTGTTGAGGGAGGAAAGAAGGTGGATGGAATATaGCTTGTCTCCGACAGGGCTGAGAGCCCCGATTCACGCCCCACA +
Preference number: 2 (lower is better)
Translates to: YGSISVEGGKKVDGI*LVSDRAESPDSRPT
Trigger: TGTGGGGCGTGAATCGGGGCTCTCAGCCCTGTCGGAGACAAGCAATATTCCATCCACCTTCTTTCCTCCCTCAACACTTATACTACCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR GCA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGAAATGTGAGGCTCCATTaGCCAGGGTTTGCTCTGCCA +
Preference number: 2 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRNVRLH*PGFALP
Trigger: TGGCAGAGCAAACCCTGGGCAATGGAGCCTCACATT...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATCAGAAGAGAGGGTCCTaGGAAGCTGAGCACTGTCAT +
Preference number: 2 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHQKRGS*EAEHCH
Trigger: ATGACAGTGCTCAGCTTCCCAGGACCCTCTCTTCTG...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCCGTCTGCCCACAGTTTaGTCCATAAAGCATGCGTGT +
Preference number: 2 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPRLPTV*SIKHAC
Trigger: ACACGCATGCTTTATGGACCAAACTGTGGGCAGACG...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGAAAGTCAAAACCATTaGACTCCAGTAGATCGGGTG +
Preference number: 2 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPESQNH*TPVDRV
Trigger: CACCCGATCTACTGGAGTTCAATGGTTTTGACTTTC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTAAGCATGCGTGTGAGTaGGAGGAAAGTCAAAACCAT +
Preference number: 2 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFKHACE*EESQNH
Trigger: ATGGTTTTGACTTTCCTCTCACTCACACGCATGCTT...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTAGTGAATGGTGGCTCTaGGGGTCAAATGTGAGGCTC +
Preference number: 2 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSSEWWL*GSNVRL
Trigger: GAGCCTCACATTTGACCCTCAGAGCCACCATTCACT...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTCTTGGTGGTCCCTTGTaGGATCCAGGTGTTACTTGT +
Preference number: 2 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSLGGPL*DPGVTC
Trigger: ACAAGTAACACCTGGATCCCACAAGGGACCACCAAG...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTGTAGAAACGGGTATTTaGAAAAGTGAATGGTGGCTC +
Preference number: 2 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSVETGI*KSEWWL
Trigger: GAGCCACCATTCACTTTTTCAAATACCCGTTTCTAC...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR TCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTTTCCAAGTTCAAACATaGAATTGCGCATCATATGCA +
Preference number: 2 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSFQVQT*NCASYA
Trigger: TGCATATGATGCGCAATTTCATGTTTGAACTTGGAA...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 72 bp CCCTTAGGACCCGCACCCCTGCACACCAAAGGCTTCTaGGGCCTTTCCATGGCAGCTTCGCTAAGCTCCCCA +
Preference number: 3 (lower is better)
Translates to: PLGPAPLHTKGF*GLSMAASLSSP
Trigger: TGGGGAGCTTAGCGAAGCTGCCATGGAAAGGCCCCAGAAGCCTTTGGTGTGCAGGGGTGCGGGTCCTAAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCCGTGGCAGGCTGGAGTaGCCACGGTCAGCTGTCCAG +
Preference number: 3 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPRGRLE*PRSAVQ
Trigger: CTGGACAGCTGACCGTGGCAACTCCAGCCTGCCACG...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR GCA 72 bp GGGTCCTGGGAAGCTGAGCACTGTCATCCTGCTTTCTaGTCGTGGCAGGCTGGAGTTGCCACGGTCAGCTGT +
Preference number: 3 (lower is better)
Translates to: GSWEAEHCHPAF*SWQAGVATVSC
Trigger: ACAGCTGACCGTGGCAACTCCAGCCTGCCACGAGCAGAAAGCAGGATGACAGTGCTCAGCTTCCCAGGACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCCCGTCTGCCCACAGTTaGGTCCATAAAGCATGCGTG +
Preference number: 3 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPPSAHS*VHKACV
Trigger: CACGCATGCTTTATGGACCAAACTGTGGGCAGACGG...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 72 bp GAAGGTGGATGGAATATTGCTTGTCTCCGACAGGGCTaGGAGCCCCGATTCACGCCCCACATTCTCTACCTC +
Preference number: 3 (lower is better)
Translates to: EGGWNIACLRQG*EPRFTPHILYL
Trigger: GAGGTAGAGAATGTGGGGCGTGAATCGGGGCTCTCAGCCCTGTCGGAGACAAGCAATATTCCATCCACCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 72 bp CCAGAAGAGGGAGTCAGATCCTGTCACGGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCTGG +
Preference number: 3 (lower is better)
Translates to: PEEGVRSCHGWL*ATMWLLGFELW
Trigger: CCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATCTGACTCCCTCTTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR CCA 72 bp CCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCG +
Preference number: 3 (lower is better)
Translates to: PVTDGCEPPCGC*DLNSGPLEEQS
Trigger: CGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR-3UTR CAA 90 bp AGAAGAGGGAGTCAGATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGATGCTCACTCTGGTaGCCAAAAGGATTGGCAGGA +
Preference number: 3 (lower is better)
Translates to: RRGSQILSRMVVSHHVVAGCSLW*PKGLAG
Trigger: TCCTGCCAATCCTTTTGGCAACCAGAGTGAGCATCC...AGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATCTGACTCCCTCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR GCA 72 bp GATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCTGGACCTTTGGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DPVTDGCEPPCG*WDLNSGPLEEQ
Trigger: CTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR TCA 72 bp CATGGTAGTTCTAACATGAGCCCTCAGTGGCAAAGGTaGCACGTTGTCTGCCTTAGATGGGCCTATGTCGTG +
Preference number: 3 (lower is better)
Translates to: HGSSNMSPQWQR*HVVCLRWAYVV
Trigger: CACGACATAGGCCCATCTAAGGCAGACAACGTGTCACCTTTGCCACTGAGGGCTCATGTTAGAACTACCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 72 bp CCGTCTGCCCACAGTTTGGTCCATAAAGCATGCGTGTaGGTGAGAGGAAAGTCAAAACCATTGAACTCCAGT +
Preference number: 3 (lower is better)
Translates to: PSAHSLVHKACV*VRGKSKPLNSS
Trigger: ACTGGAGTTCAATGGTTTTGACTTTCCTCTCACTCACACGCATGCTTTATGGACCAAACTGTGGGCAGACGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGGAAAGTCAAAACCATaGAACTCCAGTAGATCGGGT +
Preference number: 3 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPGKSKP*NSSRSG
Trigger: ACCCGATCTACTGGAGTTCAATGGTTTTGACTTTCC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CAA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCAGGATATATAAACATTaGGAGAGCTACATGCTGTAC +
Preference number: 3 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCRIYKH*ESYMLY
Trigger: GTACAGCATGTAGCTCTCCAAATGTTTATATATCCT...GCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR CCA 72 bp AAACAGGTAATGGAGCTGGAGAAGAGAAAAAGGAAGTaGGCGTGCCCGTTATTGAATGTGGTAGAAACGGGT +
Preference number: 3 (lower is better)
Translates to: KQVMELEKRKRK*ACPLLNVVETG
Trigger: ACCCGTTTCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCCATTACCTGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR-3UTR CAA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGAAAACTCTTTGGGATGTaGATTTGGTCATTCCAAAGT +
Preference number: 3 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRKLFGM*IWSFQS
Trigger: ACTTTGGAATGACCAAATCAACATCCCAAAGAGTTT...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR TCA 72 bp AAATTGTCCCTTCACCTCAACACTAATCCTTTGTTGTaGATAATCCCACTTTCCCCCTCAGAACAAGGAGGG +
Preference number: 3 (lower is better)
Translates to: KLSLHLNTNPLL*IIPLSPSEQGG
Trigger: CCCTCCTTGTTCTGAGGGGGAAAGTGGGATTATTCACAACAAAGGATTAGTGTTGAGGTGAAGGGACAATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 72 bp CCCAGACGGGATTTTGAAGACTACAGAACTATGCAGTaGCAGCTATTTCTTGCTGGCATGAACTTCACTAAT +
Preference number: 3 (lower is better)
Translates to: PRRDFEDYRTMQ*QLFLAGMNFTN
Trigger: ATTAGTGAAGTTCATGCCAGCAAGAAATAGCTGCCACTGCATAGTTCTGTAGTCTTCAAAATCCCGTCTGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 72 bp GTGGAAGACCATCTCATAACTATAGGGCAAACTCTTTaGGATGTTGATTTGGTCATTCCAAAGTCAGGATTG +
Preference number: 3 (lower is better)
Translates to: VEDHLITIGQTL*DVDLVIPKSGL
Trigger: CAATCCTGACTTTGGAATGACCAAATCAACATCCCAAAGAGTTTGCCCTATAGTTATGAGATGGTCTTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 72 bp CACAGAACATTTAGTGAGCTCATTCTATATTCCTCCTaGGGTCAAAAAGCATTTAAATTAACCGTGGGACAC +
Preference number: 3 (lower is better)
Translates to: HRTFSELILYSS*GQKAFKLTVGH
Trigger: GTGTCCCACGGTTAATTTAAATGCTTTTTGACCCCAGGAGGAATATAGAATGAGCTCACTAAATGTTCTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CCA 72 bp ATATATAAACATTTGGAGAGCTACATGCTGTACAACTaGTTTTCTCCCAGCTTATTTATCATCGCTTGGTTT +
Preference number: 3 (lower is better)
Translates to: IYKHLESYMLYN*FSPSLFIIAWF
Trigger: AAACCAAGCGATGATAAATAAGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCCTTCCACGAACACCCTaGAGGCCGCTGTACAGCACT +
Preference number: 4 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPLPRTP*RPLYST
Trigger: AGTGCTGTACAGCGGCCTCCAGGGTGTTCGTGGAAG...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATCTGGCCTCTGCTCAGTaGATCCAGCCGGCGCCACGG +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHLASAQ*IQPAPR
Trigger: CCGTGGCGCCGGCTGGATGCACTGAGCAGAGGCCAG...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp GATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGCCGTGAGAGGGGTCTaGTCAGCTGGCTTCAGGACC +
Preference number: 4 (lower is better)
Translates to: DPVTDGCEPPCGCWDLNSAVRGV*SAGFRT
Trigger: GGTCCTGAAGCCAGCTGAGCAGACCCCTCTCACGGC...AGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR TCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCTGGGCTCATGCCTGGTaGAGCACACAACGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPWAHAW*STQRCH
Trigger: ATGACAACGTTGTGTGCTTCACCAGGCATGAGCCCA...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTCTGTGGGGATGGTCCTaGCCTGGATTTTGTCTGCCC +
Preference number: 4 (lower is better)
Translates to: PPCGCWDLNSGPLEEQSGLWGWS*PGFCLP
Trigger: GGGCAGACAAAATCCAGGGCAGGACCATCCCCACAG...ACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCACCCCGATGGGCTCATaGCTGGTGAAGCACACAACG +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCTPMGS*LVKHTT
Trigger: CGTTGTGTGCTTCACCAGGCATGAGCCCATCGGGGT...GCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGCCGTGAGAGGGGTCTaGTCAGCTGGCTTCAGGACC +
Preference number: 4 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPAVRGV*SAGFRT
Trigger: GGTCCTGAAGCCAGCTGAGCAGACCCCTCTCACGGC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CAA 72 bp ACTGTCATCCTGCTTTCTGCTCGTGGCAGGCTGGAGTaGCCACGGTCAGCTGTCCAGCTTTTGAGGAAGAAG +
Preference number: 4 (lower is better)
Translates to: TVILLSARGRLE*PRSAVQLLRKK
Trigger: CTTCTTCCTCAAAAGCTGGACAGCTGACCGTGGCAACTCCAGCCTGCCACGAGCAGAAAGCAGGATGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CAA 72 bp GTGTTGAGGGAGGAAAGAAGGTGGATGGAATATTGCTaGTCTCCGACAGGGCTGAGAGCCCCGATTCACGCC +
Preference number: 4 (lower is better)
Translates to: VLREERRWMEYC*SPTGLRAPIHA
Trigger: GGCGTGAATCGGGGCTCTCAGCCCTGTCGGAGACAAGCAATATTCCATCCACCTTCTTTCCTCCCTCAACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp CCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTCAACGTTGTCATCTGTaGGGATGGTCCTGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: PPCGCWDLNSGPLEEQSGQRCHL*GWSCPG
Trigger: TCCAGGGCAGGACCATCCCCACAGATGACAACGTTG...ACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
3UTR CAA 72 bp ACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCT +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGCWD*NSGPLEEQSGA
Trigger: AGCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR TCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCACAAGGTCAGCCAGCTaGTGCAGCAACTGGCCTCTG +
Preference number: 4 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPTRSAS*CSNWPL
Trigger: CAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGT...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCAAGAACACTCCCTGGTaGGCACACTCGACGGCCAAG +
Preference number: 4 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPKNTPW*AHSTAK
Trigger: CTTGGCCGTCGAGTGTGCTCACCAGGGAGTGTTCTT...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCGTTGTCCGTAACATCTaGGAAGACCGTGGGTTTGAT +
Preference number: 4 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPVVRNI*EDRGFD
Trigger: ATCAAACCCACGGTCTTCTCAGATGTTACGGACAAC...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCCTGTGGGGATGGTCCTaGCCTGGATTTTGTCTGCCC +
Preference number: 4 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPLWGWS*PGFCLP
Trigger: GGGCAGACAAAATCCAGGGCAGGACCATCCCCACAG...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCATGGGAGGAAATTGCTaGTCCCACAGTGGGCCCAAA +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCMGGNC*SHSGPK
Trigger: TTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCAT...GCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCAGCAGCCAGCTTCAGTaGTTTGTCCAGGTTTTTGGT +
Preference number: 4 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPSSQLQ*FVQVFG
Trigger: ACCAAAAACCTGGACAAAGCACTGAAGCTGGCTGCT...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATGGGATGGTCCTGCCCTaGATTTTGTCTGCCCACCCG +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHGMVLP*ILSAHP
Trigger: CGGGTGGGCAGACAAAATCCAGGGCAGGACCATCCC...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp CACCAGCCCCAGAGTCTAATTCTTATTGGACTCTCTAAGGATGCTCACTCTGGTGGGATGGTCCTGCCCTaGATTTTGTCTGCCCACCCG +
Preference number: 4 (lower is better)
Translates to: HQPQSLILIGLSKDAHSGGMVLP*ILSAHP
Trigger: CGGGTGGGCAGACAAAATCCAGGGCAGGACCATCCC...ACCAGAGTGAGCATCCTTAGAGAGTCCAATAAGAATTAGACTCTGGGGCTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp GATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTTTGCTGCTCCCACAGTaGGCCCAAAGCCTGGTACAA +
Preference number: 4 (lower is better)
Translates to: DPVTDGCEPPCGCWDLNSLLLPQ*AQSLVQ
Trigger: TTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAA...AGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGACAACGTTGTCATCTGTaGGGATGGTCCTGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRQRCHL*GWSCPG
Trigger: TCCAGGGCAGGACCATCCCCACAGATGACAACGTTG...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTTGTTGATCTGCGGATaGGAGGAAATTGCTGCTCCC +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCLLICG*EEIAAP
Trigger: GGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAA...GCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp GATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTAGCAGTTGTTGTCTCTaGCAGCAGCTCACAGAGAGG +
Preference number: 4 (lower is better)
Translates to: DPVTDGCEPPCGCWDLNSSSCCL*QQLTER
Trigger: CCTCTCTGTGAGCTGCTGCCAGAGACAACAACTGCT...AGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR TCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATAGCACTGGCCTTGGTTaGAGAACACTCCCTGGTGAG +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHSTGLG*RTLPGE
Trigger: CTCACCAGGGAGTGTTCTTCAACCAAGGCCAGTGCT...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGAATGGGAGGAAATTGCTaGTCCCACAGTGGGCCCAAA +
Preference number: 4 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRMGGNC*SHSGPK
Trigger: TTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCAT...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGCTGCTCCCACAGTaGGCCCAAAGCCTGGTACAA +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHLLLPQ*AQSLVQ
Trigger: TTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAA...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp CACCAGCCCCAGAGTCTAATTCTTATTGGACTCTCTAAGGATGCTCACTCTGGTTGGGCTCATGCCTGGTaGAGCACACAACGTTGTCAT +
Preference number: 4 (lower is better)
Translates to: HQPQSLILIGLSKDAHSGWAHAW*STQRCH
Trigger: ATGACAACGTTGTGTGCTTCACCAGGCATGAGCCCA...ACCAGAGTGAGCATCCTTAGAGAGTCCAATAAGAATTAGACTCTGGGGCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATCATGAAGGAATGGCTTaGCGGTGTCCATGGTCTCCA +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHHEGMA*RCPWSP
Trigger: TGGAGACCATGGACACCGGCAAGCCATTCCTTCATG...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp ACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCGCTATCTTGTTGATCTaGGGATGGGAGGAAATTGCT +
Preference number: 4 (lower is better)
Translates to: TMWLLGFELWTFGRAVGCAILLI*GWEEIA
Trigger: AGCAATTTCCTCCCATCCGCAGATCAACAAGATAGC...GCACCCGACTGCTCTTCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCTTGTTGATCTGCGGATaGGAGGAAATTGCTGCTCCC +
Preference number: 4 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPLLICG*EEIAAP
Trigger: GGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAA...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGAAGGGGTCTCCAACTaGCCTCTTCTTGGCGAACTC +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFEGVSN*PLLGEL
Trigger: GAGTTCGCCAAGAAGAGGCCAGTTGGAGACCCCTTC...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGATGCTATTCGCTCTCTTaGTCACCTCCTCCAGGTTTT +
Preference number: 4 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRCYSLS*SPPPGF
Trigger: AAAACCTGGAGGAGGTGATCAAGAGAGCGAATAGCA...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTGTCATCTGTGGGGATaGTCCTGCCCTGGATTTTGT +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHCHLWG*SCPGFC
Trigger: ACAAAATCCAGGGCAGGACCATCCCCACAGATGACA...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp AGAAGAGGGAGTCAGATCCTGTCACGGATGGTTGTGAGCCACCATGTGGTTGCTGAAGCAAATAGTATTTaGGCTTCTCAAGGAAACGTC +
Preference number: 4 (lower is better)
Translates to: RRGSQILSRMVVSHHVVAEANSI*ASQGNV
Trigger: GACGTTTCCTTGAGAAGCTCAAATACTATTTGCTTC...AGCAACCACATGGTGGCTCACAACCATCCGTGACAGGATCTGACTCCCTCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTAACTTCAGGATCGGCTaGACTGGTCCGAAAATCTCC +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFNFRIG*TGPKIS
Trigger: GGAGATTTTCGGACCAGTGCAGCCGATCCTGAAGTT...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTAAAGGCATGAAGGAATaGCTTGCCGGTGTCCATGGT +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFKGMKE*LAGVHG
Trigger: ACCATGGACACCGGCAAGCCATTCCTTCATGCCTTT...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGACGAAAATCTCCTCTTTaGCAATCCTCATGTTGTCCG +
Preference number: 4 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRRKSPL*QSSCCP
Trigger: CGGACAACATGAGGATTGCCAAAGAGGAGATTTTCG...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTACCCCGATGGGCTCATaGCTGGTGAAGCACACAACG +
Preference number: 4 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSTPMGS*LVKHTT
Trigger: CGTTGTGTGCTTCACCAGGCATGAGCCCATCGGGGT...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTTTTGGTGAACACTGCTaGTGTGAGTCCATAGTCGGT +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFFGEHC*CESIVG
Trigger: ACCGACTATGGACTCACAGCAGCAGTGTTCACCAAA...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATACTTTCTTCCACTCTTaGATTCGTGCCAGTCGTTGT +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHTFFHS*IRASRC
Trigger: ACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGT...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR TCA 90 bp GGATATATAAACATTTGGAGAGCTACATGCTGTACAACTGGTTTTCTCCCAGCTTCGACGAAAAAGGCATaGAGGAATGGCTTGCCGGTG +
Preference number: 4 (lower is better)
Translates to: GYINIWRATCCTTGFLPASTKKA*RNGLPV
Trigger: CACCGGCAAGCCATTCCTTCATGCCTTTTTCGTCGA...AGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATATCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR GCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATCCACTCTTGGATTCGTaGCAGTCGTTGTTGATAAAT +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHPLLDS*QSLLIN
Trigger: ATTTATCAACAACGACTGGCACGAATCCAAGAGTGG...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGCTATCTTGTTGATCTaGGGATGGGAGGAAATTGCT +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFAILLI*GWEEIA
Trigger: AGCAATTTCCTCCCATCCGCAGATCAACAAGATAGC...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGTTTTTGGTGAACACTaGTGCTGTGAGTCCATAGTC +
Preference number: 4 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFVFGEH*CCESIV
Trigger: GACTATGGACTCACAGCAGCAGTGTTCACCAAAAAC...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp GGATATATAAACATTTGGAGAGCTACATGCTGTACAACTGGTTTTCTCCCAGCTAGTGGGCCCAAAGCCTaGTACAATGTTCACCACACC +
Preference number: 4 (lower is better)
Translates to: GYINIWRATCCTTGFLPASGPKA*YNVHHT
Trigger: GGTGTGGTGAACATTGTACCAGGCTTTGGGCCCACT...AGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR TCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTTCGACGAAAAAGGCATaGAGGAATGGCTTGCCGGTG +
Preference number: 4 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSSTKKA*RNGLPV
Trigger: CACCGGCAAGCCATTCCTTCATGCCTTTTTCGTCGA...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATAGCCTGTGCATAAAATaGATTGTAGCAGTTGATCCA +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHSLCIK*IVAVDP
Trigger: TGGATCAACTGCTACAATGCATTTTATGCACAGGCT...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp GGATATATAAACATTTGGAGAGCTACATGCTGTACAACTGGTTTTCTCCCAGCTTGTCATCTGTGGGGATaGTCCTGCCCTGGATTTTGT +
Preference number: 4 (lower is better)
Translates to: GYINIWRATCCTTGFLPACHLWG*SCPGFC
Trigger: ACAAAATCCAGGGCAGGACCATCCCCACAGATGACA...AGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATATCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTAGTGGGCCCAAAGCCTaGTACAATGTTCACCACACC +
Preference number: 4 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSSGPKA*YNVHHT
Trigger: GGTGTGGTGAACATTGTACCAGGCTTTGGGCCCACT...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CCA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGAAGGGTTATATGTaGCAAACTTTCTTCCACTCT +
Preference number: 4 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHLKGYM*QTFFHS
Trigger: AGAGTGGAAGAAAGTTTGCCACATATAACCCTTCAA...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
3UTR CAA 72 bp GCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTaGCTCACAGAACATTTAGTGAGCTCATTCTATATT +
Preference number: 4 (lower is better)
Translates to: AQMTPKRPQRPD*LTEHLVSSFYI
Trigger: AATATAGAATGAGCTCACTAAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR GCA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTACCAAATGGAGCCTGTaGATAAAATGCATTGTAGCA +
Preference number: 4 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSTKWSL*IKCIVA
Trigger: TGCTACAATGCATTTTATGCACAGGCTCCATTTGGT...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 90 bp GGTCCCTTTCTACAAGGTCAGCCAGCTGATGCAGCAACTGGCCTCTaGTCAGTGCATCCAGCCGGCGCCACGGGGATCCCCGCTGGAAGG +
Preference number: 5 (lower is better)
Translates to: GPFLQGQPADAATGL*SVHPAGATGIPAGR
Trigger: CCTTCCAGCGGGGATCCCCGTGGCGCCGGCTGGATGCACTGAGCAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGTAGAAAGGGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS GCA 90 bp TTCTACAAGGTCAGCCAGCTGATGCAGCAACTGGCCTCTGCTCAGTaGATCCAGCCGGCGCCACGGGGATCCCCGCTGGAAGGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: FYKVSQLMQQLASAQ*IQPAPRGSPLEGSL
Trigger: CAAGCTGCCTTCCAGCGGGGATCCCCGTGGCGCCGGCTGGATGCACTGAGCAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGTAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS TCA 90 bp AGAGTAGCCAGGATCGCTCGGTCCCTTTCTACAAGGTCAGCCAGCTaGTGCAGCAACTGGCCTCTGCTCAGTGCATCCAGCCGGCGCCAC +
Preference number: 5 (lower is better)
Translates to: RVARIARSLSTRSAS*CSNWPLLSASSRRH
Trigger: GTGGCGCCGGCTGGATGCACTGAGCAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGTAGAAAGGGACCGAGCGATCCTGGCTACTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCGGCCCCTGCTCCGTTTaGGCATCGAAGGGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPGPCSV*ASKGSP
Trigger: TGGAGACCCCTTCGATGCCAAAACGGAGCAGGGGCC...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS TCA 90 bp CTTCCACGAACACCCTGGAGGCCGCTGTACAGCACTGGCCTTGGTTaGAGAACACTCCCTGGTGAGCACACTCGACGGCCAAGTCCAAGT +
Preference number: 5 (lower is better)
Translates to: LPRTPWRPLYSTGLG*RTLPGEHTRRPSPS
Trigger: ACTTGGACTTGGCCGTCGAGTGTGCTCACCAGGGAGTGTTCTTCAACCAAGGCCAGTGCTGTACAGCGGCCTCCAGGGTGTTCGTGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS GCA 90 bp ACCTCTTTGATGAGAGAGGCTAGGTACAGAGCCGTGAGAGGGGTCTaGTCAGCTGGCTTCAGGACCACGGTGTTCCCACAGCACAGGGCA +
Preference number: 5 (lower is better)
Translates to: TSLMREARYRAVRGV*SAGFRTTVFPQHRA
Trigger: TGCCCTGTGCTGTGGGAACACCGTGGTCCTGAAGCCAGCTGAGCAGACCCCTCTCACGGCTCTGTACCTAGCCTCTCTCATCAAAGAGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
ENSMUST00000174701.2
CDS-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCGCGGCCTCCACAGCCTaGTCCACATCGGGCTTATCT +
Preference number: 5 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPAASTA*STSGLS
Trigger: AGATAAGCCCGATGTGGACAAGGCTGTGGAGGCCGC...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 90 bp AGAGGGCGTACCTCTGTGGAGCCGGTGAAGGCTATCTTGTTGATCTaGGGATGGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: RGRTSVEPVKAILLI*GWEEIAAPTVGPKP
Trigger: AGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACGCCCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CCA 90 bp CTGCGGATGGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCTaGTACAATGTTCACCACACCCGGAGGGAACCCGACCTCTTTGAT +
Preference number: 5 (lower is better)
Translates to: LRMGGNCCSHSGPKA*YNVHHTRREPDLFD
Trigger: ATCAAAGAGGTCGGGTTCCCTCCGGGTGTGGTGAACATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CCA 90 bp CCAACCTCTGTGGAGCCGGTGAAGGCTATCTTGTTGATCTGCGGATaGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCTGGTACA +
Preference number: 5 (lower is better)
Translates to: PTSVEPVKAILLICG*EEIAAPTVGPKPGT
Trigger: TGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CCA 90 bp CGTACCTCTGTGGAGCCGGTGAAGGCTATCTTGTTGATCTGCGGATaGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCTGGTACA +
Preference number: 5 (lower is better)
Translates to: RTSVEPVKAILLICG*EEIAAPTVGPKPGT
Trigger: TGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCCCGCTGGAAGGCAGCTaGAGCGGCCTCCACAGCCTT +
Preference number: 5 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPPLEGS*SGLHSL
Trigger: AAGGCTGTGGAGGCCGCTCAAGCTGCCTTCCAGCGG...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 90 bp GCCGGTGAAGGCTATCTTGTTGATCTGCGGATGGGAGGAAATTGCTaGTCCCACAGTGGGCCCAAAGCCTGGTACAATGTTCACCACACC +
Preference number: 5 (lower is better)
Translates to: AGEGYLVDLRMGGNC*SHSGPKAWYNVHHT
Trigger: GGTGTGGTGAACATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS GCA 90 bp GGAGCCGGTGAAGGCTATCTTGTTGATCTGCGGATGGGAGGAAATTaGTGCTCCCACAGTGGGCCCAAAGCCTGGTACAATGTTCACCAC +
Preference number: 5 (lower is better)
Translates to: GAGEGYLVDLRMGGN*CSHSGPKAWYNVHH
Trigger: GTGGTGAACATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS GCA 90 bp AGCTTTCCAACCTCTGTGGAGCCGGTGAAGGCTATCTTGTTGATCTaGGGATGGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCT +
Preference number: 5 (lower is better)
Translates to: SFPTSVEPVKAILLI*GWEEIAAPTVGPKP
Trigger: AGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTTGGAAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGAAACTTGACCTCCAAGTaGCGGATGGGGCGCGGCAAG +
Preference number: 5 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRNLTSK*RMGRGK
Trigger: CTTGCCGCGCCCCATCCGCAACTTGGAGGTCAAGTT...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGACCCCCACATTCTAGCTaGGCCCCTTCCTTCTTCCCA +
Preference number: 5 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRPPHSS*APSFFP
Trigger: TGGGAAGAAGGAAGGGGCCAAGCTAGAATGTGGGGG...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 90 bp CGCAGCAGCCAGCTTCAGTGCTTTGTCCAGGTTTTTGGTGAACACTaGTGCTGTGAGTCCATAGTCGGTGCTATTCGCTCTCTTGATCAC +
Preference number: 5 (lower is better)
Translates to: RSSQLQCFVQVFGEH*CCESIVGAIRSLDH
Trigger: GTGATCAAGAGAGCGAATAGCACCGACTATGGACTCACAGCAGCAGTGTTCACCAAAAACCTGGACAAAGCACTGAAGCTGGCTGCTGCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCAATATCTTGGTGAACTaGACCTCCAAGTTGCGGATG +
Preference number: 5 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPNILVN*TSKLRM
Trigger: CATCCGCAACTTGGAGGTCAAGTTCACCAAGATATT...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp ATTCTTATTGGACTCTCTAAGGATGCTCACTCTGGTTGCCAAAAGGATTGGCAGGCGGATGGGAGGAAATaGCTGCTCCCACAGTGGGCC +
Preference number: 5 (lower is better)
Translates to: ILIGLSKDAHSGCQKDWQADGRK*LLPQWA
Trigger: GGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGC...CTGCCAATCCTTTTGGCAACCAGAGTGAGCATCCTTAGAGAGTCCAATAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CAA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGACCGGTGAAGGCTATCTaGTTGATCTGCGGATGGGAG +
Preference number: 5 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRPVKAI*LICGWE
Trigger: CTCCCATCCGCAGATCAACAAGATAGCCTTCACCGG...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS TCA 90 bp TATCTGAAGGTCTTAATACAGCCTTCCAGGTCGACGAAAAAGGCATaGAGGAATGGCTTGCCGGTGTCCATGGTCTCCAGAGTAGCCAGG +
Preference number: 5 (lower is better)
Translates to: YLKVLIQPSRSTKKA*RNGLPVSMVSRVAR
Trigger: CCTGGCTACTCTGGAGACCATGGACACCGGCAAGCCATTCCTTCATGCCTTTTTCGTCGACCTGGAAGGCTGTATTAAGACCTTCAGATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCTCGTGCCAGTCGTTGTaGATAAATATCTTGGTGAAC +
Preference number: 5 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPSCQSL*INILVN
Trigger: GTTCACCAAGATATTTATCAACAACGACTGGCACGA...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTGTCCTGCCCTGGATTTaGTCTGCCCACCCGGCAAAA +
Preference number: 5 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFVLPWI*SAHPAK
Trigger: TTTTGCCGGGTGGGCAGACAAAATCCAGGGCAGGAC...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp CACCAGCCCCAGAGTCTAATTCTTATTGGACTCTCTAAGGATGCTCACTCTGGTCCGGTGAAGGCTATCTaGTTGATCTGCGGATGGGAG +
Preference number: 5 (lower is better)
Translates to: HQPQSLILIGLSKDAHSGPVKAI*LICGWE
Trigger: CTCCCATCCGCAGATCAACAAGATAGCCTTCACCGG...ACCAGAGTGAGCATCCTTAGAGAGTCCAATAAGAATTAGACTCTGGGGCTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CAA 90 bp AGGCAAAGTCAGAGCTGGGTAAGAGTTCCTCTCCAGGCAGCCCTCCAGTTTCCCTTCTTCTCCTCGAGTTaGATGGTGACAGTTTTCACT +
Preference number: 5 (lower is better)
Translates to: RQSQSWVRVPLQAALQFPFFSSS*MVTVFT
Trigger: AGTGAAAACTGTCACCATCAAACTCGAGGAGAAGAA...GGGAAACTGGAGGGCTGCCTGGAGAGGAACTCTTACCCAGCTCTGACTTTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp ATTCTTATTGGACTCTCTAAGGATGCTCACTCTGGTTGCCAAAAGGATTGGCAGGTCCTGCCCTGGATTTaGTCTGCCCACCCGGCAAAA +
Preference number: 5 (lower is better)
Translates to: ILIGLSKDAHSGCQKDWQVLPWI*SAHPAK
Trigger: TTTTGCCGGGTGGGCAGACAAAATCCAGGGCAGGAC...CTGCCAATCCTTTTGGCAACCAGAGTGAGCATCCTTAGAGAGTCCAATAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CAA 90 bp TGTGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATGTGAAGCACACAACGTaGTCATCTGTGGGGATGGTC +
Preference number: 5 (lower is better)
Translates to: CAQMTPKRPQRPDLLTEHVKHTT*SSVGMV
Trigger: GACCATCCCCACAGATGACAACGTTGTGTGCTTCAC...ATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGCTTTGTCCAGGTTTTaGGTGAACACTGCTGCTGTG +
Preference number: 5 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPALSRF*VNTAAV
Trigger: CACAGCAGCAGTGTTCACCAAAAACCTGGACAAAGC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGCCAGCTTCAGTGCTTaGTCCAGGTTTTTGGTGAAC +
Preference number: 5 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPASFSA*SRFLVN
Trigger: GTTCACCAAAAACCTGGACAAAGCACTGAAGCTGGC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp GGAGCTGGAGAAGAGAAAAAGGAAGTGGGCGTGCCCGTTATTGAATGTGGTAGAAACTTTCTTCCACTCTaGGATTCGTGCCAGTCGTTG +
Preference number: 5 (lower is better)
Translates to: GAGEEKKEVGVPVIECGRNFLPL*DSCQSL
Trigger: CAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTT...TCTACCACATTCAATAACGGGCACGCCCACTTCCTTTTTCTCTTCTCCAGCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTGCGGATGGGAGGAAATaGCTGCTCCCACAGTGGGCC +
Preference number: 5 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSADGRK*LLPQWA
Trigger: GGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGC...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCGATTCGTGCCAGTCGTaGTTGATAAATATCTTGGTG +
Preference number: 5 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPDSCQS*LINILV
Trigger: CACCAAGATATTTATCAACAACGACTGGCACGAATC...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp GGATATATAAACATTTGGAGAGCTACATGCTGTACAACTGGTTTTCTCCCAGCTGTGAAGCACACAACGTaGTCATCTGTGGGGATGGTC +
Preference number: 5 (lower is better)
Translates to: GYINIWRATCCTTGFLPAVKHTT*SSVGMV
Trigger: GACCATCCCCACAGATGACAACGTTGTGTGCTTCAC...AGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS-3UTR CAA 90 bp TGCACAGATGACCCCAAAGAGACCCCAAAGACCAGATTTGCTCACAGAACATTTATCAGCTCGAGGATTTaGTCAAACTGCTTTTGGTCG +
Preference number: 5 (lower is better)
Translates to: CTDDPKETPKTRFAHRTFISSRI*SNCFWS
Trigger: CGACCAAAAGCAGTTTGACAAAATCCTCGAGCTGAT...AAATGTTCTGTGAGCAAATCTGGTCTTTGGGGTCTCTTTGGGGTCATCTGTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp AAAGTCAGGATTGTTTTCAAGGTGAACCCCATGGTCAGTGCCCATATGCAGCCCTTGTTGATAAATATCTaGGTGAACTTGACCTCCAAG +
Preference number: 5 (lower is better)
Translates to: KVRIVFKVNPMVSAHMQPLLINI*VNLTSK
Trigger: CTTGGAGGTCAAGTTCACCAAGATATTTATCAACAA...GGGCTGCATATGGGCACTGACCATGGGGTTCACCTTGAAAACAATCCTGACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp GGATATATAAACATTTGGAGAGCTACATGCTGTACAACTGGTTTTCTCCCAGCTCAAATAATGGAGCAGTaGTTGTCTCTGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: GYINIWRATCCTTGFLPAQIMEQ*LSLAAA
Trigger: AGCTGCTGCCAGAGACAACAACTGCTCCATTATTTG...AGCTGGGAGAAAACCAGTTGTACAGCATGTAGCTCTCCAAATGTTTATATATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000174209.8
CDS GCA 90 bp GTTGAAGGGTTATATGTGGCAAACTTTCTTCCACTCTTGGATTCGTaGCAGTCGTTGTTGATAAATATCTTGGTGAACTTGACCTCCAAG +
Preference number: 5 (lower is better)
Translates to: VEGLYVANFLPLLDS*QSLLINILVNLTSK
Trigger: CTTGGAGGTCAAGTTCACCAAGATATTTATCAACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTTTGCCACATATAACCCTTCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS-3UTR CAA 90 bp ATACCCAAAATTCAGTGTCCGAAGCCAAATCCTGACTTAACTAGTTATGGTAGTCCGAAAATCTCCTCTTaGGCAATCCTCATGTTGTCC +
Preference number: 5 (lower is better)
Translates to: IPKIQCPKPNPDLTSYGSPKISS*AILMLS
Trigger: GGACAACATGAGGATTGCCAAAGAGGAGATTTTCGG...ACTACCATAACTAGTTAAGTCAGGATTTGGCTTCGGACACTGAATTTTGGGTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 72 bp CTACAAGGTCAGCCAGCTGATGCAGCAACTGGCCTCTaGTCAGTGCATCCAGCCGGCGCCACGGGGATCCCC +
Preference number: 6 (lower is better)
Translates to: LQGQPADAATGL*SVHPAGATGIP
Trigger: GGGGATCCCCGTGGCGCCGGCTGGATGCACTGAGCAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGTAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS TCA 72 bp ACACCCTGGAGGCCGCTGTACAGCACTGGCCTTGGTTaGAGAACACTCCCTGGTGAGCACACTCGACGGCCA +
Preference number: 6 (lower is better)
Translates to: TPWRPLYSTGLG*RTLPGEHTRRP
Trigger: TGGCCGTCGAGTGTGCTCACCAGGGAGTGTTCTTCAACCAAGGCCAGTGCTGTACAGCGGCCTCCAGGGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS GCA 72 bp ATGAGAGAGGCTAGGTACAGAGCCGTGAGAGGGGTCTaGTCAGCTGGCTTCAGGACCACGGTGTTCCCACAG +
Preference number: 6 (lower is better)
Translates to: MREARYRAVRGV*SAGFRTTVFPQ
Trigger: CTGTGGGAACACCGTGGTCCTGAAGCCAGCTGAGCAGACCCCTCTCACGGCTCTGTACCTAGCCTCTCTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
ENSMUST00000174701.2
CDS CCA 72 bp GGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAGCCTaGTACAATGTTCACCACACCCGGAGGGAACCCGAC +
Preference number: 6 (lower is better)
Translates to: GGNCCSHSGPKA*YNVHHTRREPD
Trigger: GTCGGGTTCCCTCCGGGTGTGGTGAACATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 90 bp TCACAGAGAGGGCGTACCTCTGTGGAGCCGGTGAAGGCTATCTTGTaGATCTGCGGATGGGAGGAAATTGCTGCTCCCACAGTGGGCCCA +
Preference number: 6 (lower is better)
Translates to: SQRGRTSVEPVKAIL*ICGWEEIAAPTVGP
Trigger: TGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACGCCCTCTCTGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 90 bp AGCTCACAGAGAGGGCGTACCTCTGTGGAGCCGGTGAAGGCTATCTaGTTGATCTGCGGATGGGAGGAAATTGCTGCTCCCACAGTGGGC +
Preference number: 6 (lower is better)
Translates to: SSQRGRTSVEPVKAI*LICGWEEIAAPTVG
Trigger: GCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACGCCCTCTCTGTGAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS TCA 72 bp AGGATCGCTCGGTCCCTTTCTACAAGGTCAGCCAGCTaGTGCAGCAACTGGCCTCTGCTCAGTGCATCCAGC +
Preference number: 6 (lower is better)
Translates to: RIARSLSTRSAS*CSNWPLLSASS
Trigger: GCTGGATGCACTGAGCAGAGGCCAGTTGCTGCATCAGCTGGCTGACCTTGTAGAAAGGGACCGAGCGATCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS GCA 72 bp CATGGTGTAATGGCCCCACACACCCCGATGGGCTCATaGCTGGTGAAGCACACAACGTTGTCATCTGTGGGG +
Preference number: 6 (lower is better)
Translates to: HGVMAPHTPMGS*LVKHTTLSSVG
Trigger: CCCCACAGATGACAACGTTGTGTGCTTCACCAGGCATGAGCCCATCGGGGTGTGTGGGGCCATTACACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
ENSMUST00000174701.2
CDS CAA 72 bp TTCTTGCCTCCTAGCTCCAGTGTGACCCTCTTCAGGTaGCTCCGGGAGGCGGCTTCTCTGACCAGCTTTCCA +
Preference number: 6 (lower is better)
Translates to: FLPPSSSVTLFR*LREAASLTSFP
Trigger: TGGAAAGCTGGTCAGAGAAGCCGCCTCCCGGAGCAACCTGAAGAGGGTCACACTGGAGCTAGGAGGCAAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS CAA 90 bp CTGACCAGCTTTCCAACCTCTGTGGAGCCGGTGAAGGCTATCTTGTaGATCTGCGGATGGGAGGAAATTGCTGCTCCCACAGTGGGCCCA +
Preference number: 6 (lower is better)
Translates to: LTSFPTSVEPVKAIL*ICGWEEIAAPTVGP
Trigger: TGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTTGGAAAGCTGGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CCA 72 bp GTGGAGCCGGTGAAGGCTATCTTGTTGATCTGCGGATaGGAGGAAATTGCTGCTCCCACAGTGGGCCCAAAG +
Preference number: 6 (lower is better)
Translates to: VEPVKAILLICG*EEIAAPTVGPK
Trigger: CTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 72 bp GGGCGTACCTCTGTGGAGCCGGTGAAGGCTATCTTGTaGATCTGCGGATGGGAGGAAATTGCTGCTCCCACA +
Preference number: 6 (lower is better)
Translates to: GRTSVEPVKAIL*ICGWEEIAAPT
Trigger: TGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 72 bp AGAGGGCGTACCTCTGTGGAGCCGGTGAAGGCTATCTaGTTGATCTGCGGATGGGAGGAAATTGCTGCTCCC +
Preference number: 6 (lower is better)
Translates to: RGRTSVEPVKAI*LICGWEEIAAP
Trigger: GGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTACGCCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 90 bp TGCCAGTCGTTGTTGATAAATATCTTGGTGAACTTGACCTCCAAGTaGCGGATGGGGCGCGGCAAGGCAGGCGGTTTCCCATCCGGCTGT +
Preference number: 6 (lower is better)
Translates to: CQSLLINILVNLTSK*RMGRGKAGGFPSGC
Trigger: ACAGCCGGATGGGAAACCGCCTGCCTTGCCGCGCCCCATCCGCAACTTGGAGGTCAAGTTCACCAAGATATTTATCAACAACGACTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 90 bp TCTCTGACCAGCTTTCCAACCTCTGTGGAGCCGGTGAAGGCTATCTaGTTGATCTGCGGATGGGAGGAAATTGCTGCTCCCACAGTGGGC +
Preference number: 6 (lower is better)
Translates to: SLTSFPTSVEPVKAI*LICGWEEIAAPTVG
Trigger: GCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTTGGAAAGCTGGTCAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CCA 72 bp ACAGCCTTCCAGGTCGACGAAAAAGGCATGAAGGAATaGCTTGCCGGTGTCCATGGTCTCCAGAGTAGCCAG +
Preference number: 6 (lower is better)
Translates to: TAFQVDEKGMKE*LAGVHGLQSSQ
Trigger: CTGGCTACTCTGGAGACCATGGACACCGGCAAGCCATTCCTTCATGCCTTTTTCGTCGACCTGGAAGGCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS CAA 90 bp GCTTCTCAAGGAAACGTCGGTGGGTCTCAAATAATGGAGCAGTTGTaGTCTCTGGCAGCAGCTCACAGAGAGGGCGTACCTCTGTGGAGC +
Preference number: 6 (lower is better)
Translates to: ASQGNVGGSQIMEQL*SLAAAHREGVPLWS
Trigger: GCTCCACAGAGGTACGCCCTCTCTGTGAGCTGCTGCCAGAGACAACAACTGCTCCATTATTTGAGACCCACCGACGTTTCCTTGAGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 72 bp CTCATGTTGTCCGTAACATCTGAGAAGACCGTGGGTTaGATGAACAGCCCTCTGTCCTCCATGGCTGACCCC +
Preference number: 6 (lower is better)
Translates to: LMLSVTSEKTVG*MNSPLSSMADP
Trigger: GGGGTCAGCCATGGAGGACAGAGGGCTGTTCATCAAACCCACGGTCTTCTCAGATGTTACGGACAACATGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp GGAAACGTCGGTGGGTCTCAAATAATGGAGCAGTTGTaGTCTCTGGCAGCAGCTCACAGAGAGGGCGTACCT +
Preference number: 6 (lower is better)
Translates to: GNVGGSQIMEQL*SLAAAHREGVP
Trigger: AGGTACGCCCTCTCTGTGAGCTGCTGCCAGAGACAACAACTGCTCCATTATTTGAGACCCACCGACGTTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS TCA 72 bp CAAATGGAGCCTGTGCATAAAATGCATTGTAGCAGTTaGTCCAGACTGTCCCCGACTCGAGCGCAGCAGCCA +
Preference number: 6 (lower is better)
Translates to: QMEPVHKMHCSS*SRLSPTRAQQP
Trigger: TGGCTGCTGCGCTCGAGTCGGGGACAGTCTGGATCAACTGCTACAATGCATTTTATGCACAGGCTCCATTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 72 bp GGCTATCTTGTTGATCTGCGGATGGGAGGAAATTGCTaGTCCCACAGTGGGCCCAAAGCCTGGTACAATGTT +
Preference number: 6 (lower is better)
Translates to: GYLVDLRMGGNC*SHSGPKAWYNV
Trigger: AACATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS GCA 72 bp GAAGGCTATCTTGTTGATCTGCGGATGGGAGGAAATTaGTGCTCCCACAGTGGGCCCAAAGCCTGGTACAAT +
Preference number: 6 (lower is better)
Translates to: EGYLVDLRMGGN*CSHSGPKAWYN
Trigger: ATTGTACCAGGCTTTGGGCCCACTGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS CAA 72 bp TTGTTGATAAATATCTTGGTGAACTTGACCTCCAAGTaGCGGATGGGGCGCGGCAAGGCAGGCGGTTTCCCA +
Preference number: 6 (lower is better)
Translates to: LLINILVNLTSK*RMGRGKAGGFP
Trigger: TGGGAAACCGCCTGCCTTGCCGCGCCCCATCCGCAACTTGGAGGTCAAGTTCACCAAGATATTTATCAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp TTTCCAACCTCTGTGGAGCCGGTGAAGGCTATCTTGTaGATCTGCGGATGGGAGGAAATTGCTGCTCCCACA +
Preference number: 6 (lower is better)
Translates to: FPTSVEPVKAIL*ICGWEEIAAPT
Trigger: TGTGGGAGCAGCAATTTCCTCCCATCCGCAGATCAACAAGATAGCCTTCACCGGCTCCACAGAGGTTGGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp CAAGGAAACGTCGGTGGGTCTCAAATAATGGAGCAGTaGTTGTCTCTGGCAGCAGCTCACAGAGAGGGCGTA +
Preference number: 6 (lower is better)
Translates to: QGNVGGSQIMEQ*LSLAAAHREGV
Trigger: TACGCCCTCTCTGTGAGCTGCTGCCAGAGACAACAACTGCTCCATTATTTGAGACCCACCGACGTTTCCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000174209.8
ENSMUST00000174215.2
CDS TCA 72 bp GTCTTAATACAGCCTTCCAGGTCGACGAAAAAGGCATaGAGGAATGGCTTGCCGGTGTCCATGGTCTCCAGA +
Preference number: 6 (lower is better)
Translates to: VLIQPSRSTKKA*RNGLPVSMVSR
Trigger: TCTGGAGACCATGGACACCGGCAAGCCATTCCTTCATGCCTTTTTCGTCGACCTGGAAGGCTGTATTAAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015278.15
ENSMUST00000174701.2
CDS CAA 90 bp AAGCACACAACGTTGTCATCTGTGGGGATGGTCCTGCCCTGGATTTaGTCTGCCCACCCGGCAAAATATCTGAAGGTCTTAATACAGCCT +
Preference number: 6 (lower is better)
Translates to: KHTTLSSVGMVLPWI*SAHPAKYLKVLIQP
Trigger: AGGCTGTATTAAGACCTTCAGATATTTTGCCGGGTGGGCAGACAAAATCCAGGGCAGGACCATCCCCACAGATGACAACGTTGTGTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000015278.15
ENSMUST00000174209.8
ENSMUST00000174215.2
ENSMUST00000174701.2
CDS GCA 72 bp CAGCTTCAGTGCTTTGTCCAGGTTTTTGGTGAACACTaGTGCTGTGAGTCCATAGTCGGTGCTATTCGCTCT +
Preference number: 6 (lower is better)
Translates to: QLQCFVQVFGEH*CCESIVGAIRS
Trigger: AGAGCGAATAGCACCGACTATGGACTCACAGCAGCAGTGTTCACCAAAAACCTGGACAAAGCACTGAAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp TTCAGGATCGGCTGCACTGGTCCGAAAATCTCCTCTTaGGCAATCCTCATGTTGTCCGTAACATCTGAGAAG +
Preference number: 6 (lower is better)
Translates to: FRIGCTGPKISS*AILMLSVTSEK
Trigger: CTTCTCAGATGTTACGGACAACATGAGGATTGCCAAAGAGGAGATTTTCGGACCAGTGCAGCCGATCCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 72 bp ATTCCCAGACATTTTGAAGCCACCAAATGGAGCCTGTaGATAAAATGCATTGTAGCAGTTGATCCAGACTGT +
Preference number: 6 (lower is better)
Translates to: IPRHFEATKWSL*IKCIVAVDPDC
Trigger: ACAGTCTGGATCAACTGCTACAATGCATTTTATGCACAGGCTCCATTTGGTGGCTTCAAAATGTCTGGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp GCAAACTTTCTTCCACTCTTGGATTCGTGCCAGTCGTaGTTGATAAATATCTTGGTGAACTTGACCTCCAAG +
Preference number: 6 (lower is better)
Translates to: ANFLPLLDSCQS*LINILVNLTSK
Trigger: CTTGGAGGTCAAGTTCACCAAGATATTTATCAACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 72 bp AACTTTCTTCCACTCTTGGATTCGTGCCAGTCGTTGTaGATAAATATCTTGGTGAACTTGACCTCCAAGTTG +
Preference number: 6 (lower is better)
Translates to: NFLPLLDSCQSL*INILVNLTSKL
Trigger: CAACTTGGAGGTCAAGTTCACCAAGATATTTATCAACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS CAA 90 bp TTCTCTAGTGTTGAAGGGTTATATGTGGCAAACTTTCTTCCACTCTaGGATTCGTGCCAGTCGTTGTTGATAAATATCTTGGTGAACTTG +
Preference number: 6 (lower is better)
Translates to: FSSVEGLYVANFLPL*DSCQSLLINILVNL
Trigger: CAAGTTCACCAAGATATTTATCAACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTTTGCCACATATAACCCTTCAACACTAGAGAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15
CDS GCA 72 bp TTATATGTGGCAAACTTTCTTCCACTCTTGGATTCGTaGCAGTCGTTGTTGATAAATATCTTGGTGAACTTG +
Preference number: 6 (lower is better)
Translates to: LYVANFLPLLDS*QSLLINILVNL
Trigger: CAAGTTCACCAAGATATTTATCAACAACGACTGGCACGAATCCAAGAGTGGAAGAAAGTTTGCCACATATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015278.15