Pregenerated sensors for ALDH1A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053279Ensembl transcript IDs: ENSMUST00000087638.4, ENSMUST00000225313.2, ENSMUST00000225337.3
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 72 bp | TACAGAGAGCTTGCGCTTATATCTATCCTTCTATTCTaGGATAAGAACTGGGGTCACATATTAGAAGGTGAA | + |
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Preference number: 4 (lower is better) Translates to: YRELALISILLF*DKNWGHILEGE Trigger: TTCACCTTCTAATATGTGACCCCAGTTCTTATCCAAGAATAGAAGGATAGATATAAGCGCAAGCTCTCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CCA 90 bp | CCTCTTTGGCAATGCGCATCTCATCAGTCACGTTGGAGAACACTGTaGGCTGCACAAAGAAGCCTTTGTTCCCCCAGCGTCCTCCACCAC | + |
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Preference number: 5 (lower is better) Translates to: PLWQCASHQSRWRTL*AAQRSLCSPSVLHH Trigger: GTGGTGGAGGACGCTGGGGGAACAAAGGCTTCTTTGTGCAGCCCACAGTGTTCTCCAACGTGACTGATGAGATGCGCATTGCCAAAGAGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CCA 90 bp | GCCTTCACAGCTTTGTCAACATCAGCCTTGTCCCCTTCTTCCACGTaGCAGATGACCTCCTCAGTTGCAGGGTTAAGAACTGGAAATTTC | + |
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Preference number: 5 (lower is better) Translates to: AFTALSTSALSPSST*QMTSSVAGLRTGNF Trigger: GAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS GCA 90 bp | CATGAATCTTGTCAGCCCAGCCTGCACAGTACTTTAATGCTTTTATaGAGCCTCCTAAATCCGACAAGTATGCATTGGCAAAGACTTTCC | + |
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Preference number: 5 (lower is better) Translates to: HESCQPSLHSTLMLL*SLLNPTSMHWQRLS Trigger: GGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGCATTAAAGTACTGTGCAGGCTGGGCTGACAAGATTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CAA 90 bp | CCACCTTGTCGACATCCATGTGAGAGGAGATGGCTGCCCCTGCAGTaGGCCCATAACCAGGGACAATGTTTACCACGCCAGGAGGAAACC | + |
|
Preference number: 6 (lower is better) Translates to: PPCRHPCERRWLPLQ*AHNQGQCLPRQEET Trigger: GGTTTCCTCCTGGCGTGGTAAACATTGTCCCTGGTTATGGGCCAACTGCAGGGGCAGCCATCTCCTCTCACATGGATGTCGACAAGGTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS GCA 72 bp | AGATGCCAGGTGAAGAGCCGTGAGAGGAGTTTGCTCTaGTGGCTTGACAACCACGGTATTCCCACAGCTAAG | + |
|
Preference number: 6 (lower is better) Translates to: RCQVKSRERSLL*WLDNHGIPTAK Trigger: CTTAGCTGTGGGAATACCGTGGTTGTCAAGCCAGCAGAGCAAACTCCTCTCACGGCTCTTCACCTGGCATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CAA 90 bp | CATGGAGAGCCAATCTGGAAAGCCTGTCTTGCAGCCTTCACAGCTTaGTCAACATCAGCCTTGTCCCCTTCTTCCACGTGGCAGATGACC | + |
|
Preference number: 6 (lower is better) Translates to: HGEPIWKACLAAFTA*STSALSPSSTWQMT Trigger: GGTCATCTGCCACGTGGAAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS GCA 72 bp | GTCCCCTTCTTCCACGTGGCAGATGACCTCCTCAGTTaGAGGGTTAAGAACTGGAAATTTCTTGCCGCTCAC | + |
|
Preference number: 6 (lower is better) Translates to: VPFFHVADDLLS*RVKNWKFLAAH Trigger: GTGAGCGGCAAGAAATTTCCAGTTCTTAACCCTGCAACTGAGGAGGTCATCTGCCACGTGGAAGAAGGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | CCAATCTGGAAAGCCTGTCTTGCAGCCTTCACAGCTTaGTCAACATCAGCCTTGTCCCCTTCTTCCACGTGG | + |
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Preference number: 6 (lower is better) Translates to: PIWKACLAAFTA*STSALSPSSTW Trigger: CCACGTGGAAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | TGGTGCGCCATGGAGAGCCAATCTGGAAAGCCTGTCTaGCAGCCTTCACAGCTTTGTCAACATCAGCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: WCAMESQSGKPV*QPSQLCQHQPC Trigger: ACAAGGCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CAA 90 bp | AAGCATCCATGGTGCGCCATGGAGAGCCAATCTGGAAAGCCTGTCTaGCAGCCTTCACAGCTTTGTCAACATCAGCCTTGTCCCCTTCTT | + |
|
Preference number: 6 (lower is better) Translates to: KHPWCAMESQSGKPV*QPSQLCQHQPCPLL Trigger: AAGAAGGGGACAAGGCTGATGTTGACAAAGCTGTGAAGGCTGCAAGACAGGCTTTCCAGATTGGCTCTCCATGGCGCACCATGGATGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS GCA 72 bp | CAAGTATGCATTGGCAAAGACTTTCCCACCATTGAGTaGCTCCATTGTAGCCAGCAGCAGACGATCTCTCTC | + |
|
Preference number: 6 (lower is better) Translates to: QVCIGKDFPTIE*LHCSQQQTISL Trigger: GAGAGAGATCGTCTGCTGCTGGCTACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CAA 90 bp | CCTCCTAAATCCGACAAGTATGCATTGGCAAAGACTTTCCCACCATaGAGTGCCTCCATTGTAGCCAGCAGCAGACGATCTCTCTCCATT | + |
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Preference number: 6 (lower is better) Translates to: PPKSDKYALAKTFPP*SASIVASSRRSLSI Trigger: AATGGAGAGAGATCGTCTGCTGCTGGCTACAATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CCA 72 bp | AAGGGCAGGGCCTATCTTCCAAATGAACATGAGCATTaGAAAATTCCAGGGGATGATTTGGCCACACACTCC | + |
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Preference number: 6 (lower is better) Translates to: KGRAYLPNEHEH*KIPGDDLATHS Trigger: GGAGTGTGTGGCCAAATCATCCCCTGGAATTTTCCAATGCTCATGTTCATTTGGAAGATAGGCCCTGCCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | GCTTTTATGCAGCCTCCTAAATCCGACAAGTATGCATaGGCAAAGACTTTCCCACCATTGAGTGCCTCCATT | + |
|
Preference number: 6 (lower is better) Translates to: AFMQPPKSDKYA*AKTFPPLSASI Trigger: AATGGAGGCACTCAATGGTGGGAAAGTCTTTGCCAATGCATACTTGTCGGATTTAGGAGGCTGCATAAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000087638.4 ENSMUST00000225313.2 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | GTGACTCTCTTCAGATTGCTTTTCCCTGCAGCTTCCTaGATTAACTTGCCAACCTGTGTTGATCCAGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: VTLFRLLFPAAS*INLPTCVDPVK Trigger: CTTCACTGGATCAACACAGGTTGGCAAGTTAATCAAGGAAGCTGCAGGGAAAAGCAATCTGAAGAGAGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | CTCCTCAACAAAAATCCGGGATGCTGCGACACAACATaGGCCTTGATGATAAAACACTCCATGGTGTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: LLNKNPGCCDTT*ALMIKHSMVCK Trigger: TTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTTGAGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CAA 72 bp | AACAAAAATCCGGGATGCTGCGACACAACATTGGCCTaGATGATAAAACACTCCATGGTGTGCAAACTCAAC | + |
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Preference number: 6 (lower is better) Translates to: NKNPGCCDTTLA*MIKHSMVCKLN Trigger: GTTGAGTTTGCACACCATGGAGTGTTTTATCATCAAGGCCAATGTTGTGTCGCAGCATCCCGGATTTTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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| CDS CCA 72 bp | TTGTTCCTTGTCAATCTGAGGGCCTTGATTTATTCCTaGGGTCAGAGGATTTCCAAGAACATATTTCTTAGC | + |
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Preference number: 6 (lower is better) Translates to: LFLVNLRALIYS*GQRISKNIFLS Trigger: GCTAAGAAATATGTTCTTGGAAATCCTCTGACCCCAGGAATAAATCAAGGCCCTCAGATTGACAAGGAACAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000087638.4 ENSMUST00000225337.3 |
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