RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALDH18A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025007

Ensembl transcript IDs: ENSMUST00000025979.13, ENSMUST00000149476.3, ENSMUST00000175932.2, ENSMUST00000175967.2, ENSMUST00000176939.8, ENSMUST00000176955.8

Found 286 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGGGCCAGGGAGACAGCCTGGCAGTGGAGCATTTGCCTACCATGTaGAAGGCCCTAGATTCAACCCCAGTTACGGAGACAGACACACCC +
Preference number: 1 (lower is better)
Translates to: QGQGDSLAVEHLPTM*KALDSTPVTETDTP
Trigger: GGGTGTGTCTGTCTCCGTAACTGGGGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTCTCCCTGGCCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CCA 90 bp TTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTaGGCTGGTCCCAGTCAAAACGCCAAGAGACTTTACCTCACTGAG +
Preference number: 1 (lower is better)
Translates to: FRKRNEITCREAENG*AGPSQNAKRLYLTE
Trigger: CTCAGTGAGGTAAAGTCTCTTGGCGTTTTGACTGGGACCAGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCGCCAGGGAGACAGCCTaGCAGTGGAGCATTTGCCTA +
Preference number: 2 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVARETA*QWSICL
Trigger: TAGGCAAATGCTCCACTGCCAGGCTGTCTCCCTGGC...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR TCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCATACATGTCGAGAGGCTaGGAATGGCTGGGCTGGTCC +
Preference number: 2 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSYMSRG*EWLGWS
Trigger: GGACCAGCCCAGCCATTCTCAGCCTCTCGACATGTA...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCGAGGCTGAGAATGGCTaGGCTGGTCCCAGTCAAAAC +
Preference number: 2 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVEAENG*AGPSQN
Trigger: GTTTTGACTGGGACCAGCCCAGCCATTCTCAGCCTC...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR TCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCGGCCAAAATGGAGTGTaGACATTAGCTAAGGTTGGA +
Preference number: 2 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFGQNGV*TLAKVG
Trigger: TCCAACCTTAGCTAATGTTCACACTCCATTTTGGCC...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAATCTCTCTGGAGATCCTaGAGTAGCCTCCATGTGCCA +
Preference number: 2 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQSLWRS*SSLHVP
Trigger: TGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGA...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAGAGACAGCCTGGCAGTaGAGCATTTGCCTACCATGT +
Preference number: 2 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSETAWQ*SICLPC
Trigger: ACATGGTAGGCAAATGCTCCACTGCCAGGCTGTCTC...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR GCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACATTTGCCTACCATGTaGAAGGCCCTAGATTCAACC +
Preference number: 2 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSHLPTM*KALDST
Trigger: GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATG...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR GCA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGATTCCTAGGACTGGACTaGAGGGCCAGGGAGACAGCC +
Preference number: 2 (lower is better)
Translates to: ELALLKTSFRKRNEITCRFLGLD*RARETA
Trigger: GGCTGTCTCCCTGGCCCTGCAGTCCAGTCCTAGGAA...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGTCTCTCTGGAGATCCTaGAGTAGCCTCCATGTGCCA +
Preference number: 2 (lower is better)
Translates to: LLKTSFRKRNEITCREAESLWRS*SSLHVP
Trigger: TGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGA...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGGAGACAGCCTGGCAGTaGAGCATTTGCCTACCATGT +
Preference number: 2 (lower is better)
Translates to: LLKTSFRKRNEITCREAEETAWQ*SICLPC
Trigger: ACATGGTAGGCAAATGCTCCACTGCCAGGCTGTCTC...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR GCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTCATTTGCCTACCATGTaGAAGGCCCTAGATTCAACC +
Preference number: 2 (lower is better)
Translates to: SFRKRNEITCREAENGWAHLPTM*KALDST
Trigger: GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATG...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR TCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGGGTCTACCTCTGATGTaGACAGACTGGGAAAAGCCA +
Preference number: 2 (lower is better)
Translates to: TVSNENVKGFKELALLKTGLPLM*TDWEKP
Trigger: TGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACC...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR GCA 72 bp CAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTaGCAGACGGCGCACAACGGTCCCGACTGCCTGGCA +
Preference number: 3 (lower is better)
Translates to: QVLSGDPGVASM*QTAHNGPDCLA
Trigger: TGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CCA 72 bp TTCCTAGGACTGGACTGCAGGGCCAGGGAGACAGCCTaGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCC +
Preference number: 3 (lower is better)
Translates to: FLGLDCRARETA*QWSICLPCARP
Trigger: GGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTCTCCCTGGCCCTGCAGTCCAGTCCTAGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR GCA 72 bp GGAGACAGCCTGGCAGTGGAGCATTTGCCTACCATGTaGAAGGCCCTAGATTCAACCCCAGTTACGGAGACA +
Preference number: 3 (lower is better)
Translates to: GDSLAVEHLPTM*KALDSTPVTET
Trigger: TGTCTCCGTAACTGGGGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR GCA 72 bp CCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTaGGCCCATAACTTCACAGACACACCAAGGTCATCT +
Preference number: 3 (lower is better)
Translates to: PQAGDRLQMSRM*AHNFTDTPRSS
Trigger: AGATGACCTTGGTGTGTCTGTGAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CAA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAACTGGCAGTGGAGCATTaGCCTACCATGTGCAAGGCC +
Preference number: 3 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQLAVEH*PTMCKA
Trigger: GGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAG...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR TCA 72 bp TGGTCCCAGTCAAAACGCCAAGAGACTTTACCTCACTaGGGCGTTCCGGCAGCCAGGACTTTCCATTGTCTC +
Preference number: 3 (lower is better)
Translates to: WSQSKRQETLPH*GVPAARTFHCL
Trigger: GAGACAATGGAAAGTCCTGGCTGCCGGAACGCCTCAGTGAGGTAAAGTCTCTTGGCGTTTTGACTGGGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR TCA 72 bp GGAGACAGACACACCCAAGAAGGCCAAAATGGAGTGTaGACATTAGCTAAGGTTGGAAACGCTGAGGAGAGC +
Preference number: 3 (lower is better)
Translates to: GDRHTQEGQNGV*TLAKVGNAEES
Trigger: GCTCTCCTCAGCGTTTCCAACCTTAGCTAATGTTCACACTCCATTTTGGCCTTCTTGGGTGTGTCTGTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CCA 72 bp CATAACTTCACAGACACACCAAGGTCATCTCCCCAGTaGATACAGTCAGTCTGTCTCAGTCACCGTTTCCAA +
Preference number: 3 (lower is better)
Translates to: HNFTDTPRSSPQ*IQSVCLSHRFQ
Trigger: TTGGAAACGGTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CAA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGACTGGCAGTGGAGCATTaGCCTACCATGTGCAAGGCC +
Preference number: 3 (lower is better)
Translates to: ELALLKTSFRKRNEITCRLAVEH*PTMCKA
Trigger: GGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAG...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CCA 72 bp AGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTaGGCTGGTCCCAGTCAAAACGCCAAGAGACTTTAC +
Preference number: 3 (lower is better)
Translates to: RNEITCREAENG*AGPSQNAKRLY
Trigger: GTAAAGTCTCTTGGCGTTTTGACTGGGACCAGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CAA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGAGCCAGGACTTTCCATaGTCTCTGATGGTAGATGCG +
Preference number: 3 (lower is better)
Translates to: TVSNENVKGFKELALLKTSQDFP*SLMVDA
Trigger: CGCATCTACCATCAGAGACAATGGAAAGTCCTGGCT...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR-3UTR CAA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAAGCCAGGACTTTCCATaGTCTCTGATGGTAGATGCG +
Preference number: 3 (lower is better)
Translates to: ELALLKTSFRKRNEITCRSQDFP*SLMVDA
Trigger: CGCATCTACCATCAGAGACAATGGAAAGTCCTGGCT...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTGCCAAGGCTGCCACCTaGGGTAGACAGTCAGGGCGA +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPAKAAT*GRQSGR
Trigger: TCGCCCTGACTGTCTACCCCAGGTGGCAGCCTTGGC...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTTGGTTCTGTCCTGAGTaGAGGGCTTGCCGCACGCTC +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPWFCPE*RACRTL
Trigger: GAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCA...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGGAGGAGGCTGCGATCTaGCGCAGCCCGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQREEAAI*RSPMAR
Trigger: CCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTC...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTGCTTGCCGCACGCTCTaGGACAGAAGGATCTCATGG +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPACRTL*DRRISW
Trigger: CCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGC...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTTTCAGCTCACTTCGGTaGGCAAAGGGCTTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPFSSLR*AKGLPW
Trigger: CCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAA...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTCATGGTAGAAGACGTTaGCTGAAGGGCTGGACCCCA +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPHGRRR*LKGWTP
Trigger: TGGGGTCCAGCCCTTCAGGCAACGTCTTCTACCATG...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGGTTCTGTCCTGAGTaGAGGGCTTGCCGCACGCTC +
Preference number: 4 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDWFCPE*RACRTL
Trigger: GAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCA...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACGCCATCTCCCCCTGCTaGTCCACTGTAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDAISPC*STVGPA
Trigger: TGCTGGTCCTACAGTGGAGCAGCAGGGGGAGATGGC...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTACTGGTCCCCGGGCGTaGATTCGAGATGTGCTGATT +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPTGPRA*IRDVLI
Trigger: AATCAGCACATCTCGAATCCACGCCCGGGGACCAGT...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACAGGCGACGGCTCCACTaGTCACCAGCATCATCTCTC +
Preference number: 4 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDRRRLH*SPASSL
Trigger: GAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCT...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTATCACATTTACCCCCTaGAGATCACTGTTGGGCTCG +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPITFTP*RSLLGS
Trigger: CGAGCCCAACAGTGATCTTCAGGGGGTAAATGTGAT...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025979.13
CDS-3UTR CCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTTCACTGGGATCCCTTTaGCAGCTTTCTGGATGTCTC +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPSLGSL*QLSGCL
Trigger: GAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGA...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTCTCGGAGCATGTCAATaGTCTGGTCAAATAAGGGTG +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPLGACQ*SGQIRV
Trigger: CACCCTTATTTGACCAGATCATTGACATGCTCCGAG...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCTGGGGACGATGTTCATaGGGAGCAGCTCGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFWGRCS*GAARGG
Trigger: CCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCA...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACTGTTGGGCTCGGCTaGAGGGACGACGGCATCGTT +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQTVGLG*RDDGIV
Trigger: AACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGT...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCGCCAAGGCTGCCACCTaGGGTAGACAGTCAGGGCGA +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTAKAAT*GRQSGR
Trigger: TCGCCCTGACTGTCTACCCCAGGTGGCAGCCTTGGC...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACTGCCTGGCACCTCAGCTGAAATTTCTCTaGGGAACAGGGAGATTCTCG +
Preference number: 4 (lower is better)
Translates to: GVASMCQTAHNGPDCLAPQLKFL*GTGRFS
Trigger: CGAGAATCTCCCTGTTCCCCAGAGAAATTTCAGCTG...AGGTGCCAGGCAGTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGATCATCTCTCGGCCCTaGTTCTGCAGCACCGAGACC +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQIISRP*FCSTET
Trigger: GGTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGAT...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCGCTGTATGGCCTCCTTaGCTCCGTGGATGGAGAGGG +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTAVWPP*LRGWRG
Trigger: CCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGC...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACACGATGACATCTGTGTaGGAGCTGCCGTACTTATGG +
Preference number: 4 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDTMTSV*ELPYLW
Trigger: CCATAAGTACGGCAGCTCTCACACAGATGTCATCGT...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACGGATTCGAGATGTGCTaGTTCCAACTTCAGCTCCCA +
Preference number: 4 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDGFEMC*FQLQLP
Trigger: TGGGAGCTGAAGTTGGAATCAGCACATCTCGAATCC...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGATGTCTGTGATGACGTaGCCAGACACCTTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQRMSVMT*PDTFGW
Trigger: CCACCCAAAGGTGTCTGGGCACGTCATCACAGACAT...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGAGGAGGCTGCGATCTaGCGCAGCCCGATGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSEEAAI*RSPMAR
Trigger: CCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTC...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTGTCCACCACTTCAATaGACACTTCCAGGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQRCPPLQ*TLPGPR
Trigger: ACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACA...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCATGTCTCTGACCAGCTaGGAGGAGCCTCGGGGAATG +
Preference number: 4 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFMSLTS*EEPRGM
Trigger: CATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACAT...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGCAGATGCCTTCGCTGTaGCCCATCACTGGGATCCCT +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQQMPSL*PITGIP
Trigger: AGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTG...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCTCCCTCAAGTCCTACTaGTCCCCGGGCGTGGATTCG +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTSLKSY*SPGVDS
Trigger: CGAATCCACGCCCGGGGACCAGTAGGACTTGAGGGA...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGCGTACATGTGGCAGATaGCTTCGCTGTGGCCCATCA +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQRTCGR*LRCGPS
Trigger: TGATGGGCCACAGCGAAGGCATCTGCCACATGTACG...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGTTGCCTGAAGGGCTaGACCCCAGAGCGGTGCATG +
Preference number: 4 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSRCLKG*TPERCM
Trigger: CATGCACCGCTCTGGGGTCCAGCCCTTCAGGCAACG...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGCAAAGGGCTTGCCGTaGGCACGACTGAGGGGTACC +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHAKGLP*ARLRGT
Trigger: GGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGC...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCCCTGAAGATCACTGTTaGGCTCGGCTGGAGGGACGA +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTPEDHC*ARLEGR
Trigger: TCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGG...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGGCCTCCTTGACTCCGTaGATGGAGAGGGCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQASLTP*MERASW
Trigger: CCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGC...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCGCCTCCTTGACTCCGTaGATGGAGAGGGCCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVASLTP*MERASW
Trigger: CCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGC...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGAAGTCCGAGACCACGTaGTCTTGCCCTCGAAGCAAC +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQKSETT*SCPRSN
Trigger: GTTGCTTCGAGGGCAAGACCACGTGGTCTCGGACTT...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGTAGAAGACGTTGCCTaGAGGGCTGGACCCCAGAGC +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHVEDVA*RAGPQS
Trigger: GCTCTGGGGTCCAGCCCTTCAGGCAACGTCTTCTAC...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAGCTGTATGGCCTCCTTaGCTCCGTGGATGGAGAGGG +
Preference number: 4 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSAVWPP*LRGWRG
Trigger: CCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGC...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCCTGTTCAACAATAGATaGCAGGCGTCCCAGTGCCAG +
Preference number: 4 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFLFNNR*QASQCQ
Trigger: CTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCTGGGGACGATGTTCATaGGGAGCAGCTCGTGGAGGG +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVWGRCS*GAARGG
Trigger: CCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCA...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCATGTCTGTGATGACGTaGCCAGACACCTTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFMSVMT*PDTFGW
Trigger: CCACCCAAAGGTGTCTGGGCACGTCATCACAGACAT...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAAGCCATCTCCCCCTGCTaGTCCACTGTAGGACCAGCA +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQAISPC*STVGPA
Trigger: TGCTGGTCCTACAGTGGAGCAGCAGGGGGAGATGGC...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCCGTACATGTGGCAGATaGCTTCGCTGTGGCCCATCA +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTRTCGR*LRCGPS
Trigger: TGATGGGCCACAGCGAAGGCATCTGCCACATGTACG...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCCAGGCGCTGTCCACGTaGTGGAGGAAGAACTCCGCT +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVQALST*WRKNSA
Trigger: AGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTG...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAACAGGCGCTGTCCACGTaGTGGAGGAAGAACTCCGCT +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQQALST*WRKNSA
Trigger: AGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTG...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGCAAAGGGCTTGCCGTaGGCACGACTGAGGGGTACC +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSAKGLP*ARLRGT
Trigger: GGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGC...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCCGCTTCTGCTCGTCGTaGAAATCCAGGTTGGTCACC +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTRFCSS*KSRLVT
Trigger: GGTGACCAACCTGGATTTCCACGACGAGCAGAAGCG...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGGGCATTACAGGCGGCTaGGTATTCACATTTAGAGTC +
Preference number: 4 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQRGITGG*VFTFRV
Trigger: GACTCTAAATGTGAATACCCAGCCGCCTGTAATGCC...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CAA 72 bp ACCTCACTGAGGCGTTCCGGCAGCCAGGACTTTCCATaGTCTCTGATGGTAGATGCGTCCCTTAGGGTCTAC +
Preference number: 4 (lower is better)
Translates to: TSLRRSGSQDFP*SLMVDASLRVY
Trigger: GTAGACCCTAAGGGACGCATCTACCATCAGAGACAATGGAAAGTCCTGGCTGCCGGAACGCCTCAGTGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACTTTCTGGATGTCTCTaGCCAGCTGGGAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSLSGCL*PAGRSL
Trigger: GAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAG...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACCTTTCTGGATGTCTCTaGCCAGCTGGGAGGAGCCTC +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHLSGCL*PAGRSL
Trigger: GAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAG...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCAACCCCAGTTACGGAGACAGACACACCCAAGAAGGCCAAAATGGAGTGTGAAACAGAAGTCCCGCCTTaGAAAGCCCAGAGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: STPVTETDTPKKAKMECETEVPP*KAQRAA
Trigger: AGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGT...TTCACACTCCATTTTGGCCTTCTTGGGTGTGTCTGTCTCCGTAACTGGGGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCATCTGGGCACAGCTATaGACTGGACCCATGGTAGAA +
Preference number: 4 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFIWAQL*TGPMVE
Trigger: TTCTACCATGGGTCCAGTCCATAGCTGTGCCCAGAT...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCCACACTCATCTCCTCTaGTCACCACGGCACTGCCGA +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVHTHLL*SPRHCR
Trigger: TCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTG...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAACACACTCATCTCCTCTaGTCACCACGGCACTGCCGA +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQHTHLL*SPRHCR
Trigger: TCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTG...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGTTGGTCACCAAGATCTaGGCAGCACAGATGCTGTAC +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQLVTKI*AAQMLY
Trigger: GTACAGCATCTGTGCTGCCCAGATCTTGGTGACCAA...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCCCAGACACCTTTGGGTaGGTCCCGTTGGCAATGACG +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVPDTFG*VPLAMT
Trigger: CGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGG...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCTCTGCCGCAGCCCGATaGCCAGGCTGTTCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: NFTDTPRSSPQWIQSVCLSAAAR*PGCSVW
Trigger: CCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGA...GAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACATGTCTCTGACCAGCTaGGAGGAGCCTCGGGGAATG +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHMSLTS*EEPRGM
Trigger: CATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACAT...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CAA 72 bp TCATCCCTCCAGCGTGATGCTCAGATTCCAACTACTTaGAAGGTACCATGTGTCCCCAGGCCGGAGACAGAC +
Preference number: 4 (lower is better)
Translates to: SSLQRDAQIPTT*KVPCVPRPETD
Trigger: GTCTGTCTCCGGCCTGGGGACACATGGTACCTTCAAAGTAGTTGGAATCTGAGCATCACGCTGGAGGGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGGGGCTGGACACGATTTaGTCTGGGCACAGCTATGGA +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQGLDTI*SGHSYG
Trigger: TCCATAGCTGTGCCCAGATCAAATCGTGTCCAGCCC...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGCTTGCCGCACGCTCTaGGACAGAAGGATCTCATGG +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSACRTL*DRRISW
Trigger: CCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGC...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAACCTCCTTCCCACCTTTaGGCAACAAGCCATTGCCAC +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQPPSHL*ATSHCH
Trigger: GTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGG...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAATCCTGGGTCAGGAGGTaGAGAATGCGGTTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQSWVRR*RMRLLC
Trigger: ACACAGCAACCGCATTCTTCACCTCCTGACCCAGGA...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGCTCGGAGCATGTCAATaGTCTGGTCAAATAAGGGTG +
Preference number: 4 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQLGACQ*SGQIRV
Trigger: CACCCTTATTTGACCAGATCATTGACATGCTCCGAG...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACTTCTGAGGGGCTaGAGGTCAGGTAGGAGGCAA +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQSLLRG*RSGRRQ
Trigger: TTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGA...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCTCACTTCTGAGGGGCTaGAGGTCAGGTAGGAGGCAA +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVSLLRG*RSGRRQ
Trigger: TTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGA...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACCATGGTAGAAGACGTTaGCTGAAGGGCTGGACCCCA +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHHGRRR*LKGWTP
Trigger: TGGGGTCCAGCCCTTCAGGCAACGTCTTCTACCATG...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGAATGCGGTTGCTGTGTaGGGCCTCCTTCCCACCTTT +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQNAVAV*GLLPTF
Trigger: AAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATT...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGGCGACGGCTCCACTaGTCACCAGCATCATCTCTC +
Preference number: 4 (lower is better)
Translates to: NFTDTPRSSPQWIQSVCLRRRLH*SPASSL
Trigger: GAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCT...GAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCACCTCCTTCCCACCTTTaGGCAACAAGCCATTGCCAC +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSPPSHL*ATSHCH
Trigger: GTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGG...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAACTGTTCAACAATAGATaGCAGGCGTCCCAGTGCCAG +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQLFNNR*QASQCQ
Trigger: CTGGCACTGGGACGCCTGGCATCTATTGTTGAACAG...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCTGTCCACCACTTCAATaGACACTTCCAGGTCCCCGT +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVCPPLQ*TLPGPR
Trigger: ACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACA...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGAGACCACGTGGTCTTaGCCTCGAAGCAACCACTTT +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHETTWS*PRSNHF
Trigger: AAAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTC...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCCGCTTCTGCTCGTCGTaGAAATCCAGGTTGGTCACC +
Preference number: 4 (lower is better)
Translates to: NFTDTPRSSPQWIQSVCLRFCSS*KSRLVT
Trigger: GGTGACCAACCTGGATTTCCACGACGAGCAGAAGCG...GAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGAATCCACGTACATGTaGCAGATGCCTTCGCTGTGG +
Preference number: 4 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHESTYM*QMPSLW
Trigger: CCACAGCGAAGGCATCTGCCACATGTACGTGGATTC...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCAGCAGGCTTCACTTCTaGAAAGAAGGTGCCAACTTT +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTSRLHF*KEGANF
Trigger: AAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCT...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAAACGATGACATCTGTGTaGGAGCTGCCGTACTTATGG +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQTMTSV*ELPYLW
Trigger: CCATAAGTACGGCAGCTCTCACACAGATGTCATCGT...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCGGATTCGAGATGTGCTaGTTCCAACTTCAGCTCCCA +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVGFEMC*FQLQLP
Trigger: TGGGAGCTGAAGTTGGAATCAGCACATCTCGAATCC...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAAATCTGGGCACAGCTATaGACTGGACCCATGGTAGAA +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQIWAQL*TGPMVE
Trigger: TTCTACCATGGGTCCAGTCCATAGCTGTGCCCAGAT...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCCCTCAACTTCTTCTCTaGTGTTTACCAGCTGTATGG +
Preference number: 4 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTPQLLL*CLPAVW
Trigger: CCATACAGCTGGTAAACACCAGAGAAGAAGTTGAGG...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCAACCCCAGTTACGGAGACAGACACACCCAAGAAGGCCAAAATGGAGTGTGAAGAATCCACGTACATGTaGCAGATGCCTTCGCTGTGG +
Preference number: 4 (lower is better)
Translates to: STPVTETDTPKKAKMECEESTYM*QMPSLW
Trigger: CCACAGCGAAGGCATCTGCCACATGTACGTGGATTC...TTCACACTCCATTTTGGCCTTCTTGGGTGTGTCTGTCTCCGTAACTGGGGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp TCAACCCCAGTTACGGAGACAGACACACCCAAGAAGGCCAAAATGGAGTGTGAAACAATTCTCTTGGCGTaGTTCAGCTCACTTCGGTGG +
Preference number: 4 (lower is better)
Translates to: STPVTETDTPKKAKMECETILLA*FSSLRW
Trigger: CCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGT...TTCACACTCCATTTTGGCCTTCTTGGGTGTGTCTGTCTCCGTAACTGGGGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGGGCAAACTTGGGGCCTaGGTGAATTTTTACCTGTTC +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQGKLGA*VNFYLF
Trigger: GAACAGGTAAAAATTCACGCAGGCCCCAAGTTTGCC...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAAGGCAAACTTGGGGCCTaGGTGAATTTTTACCTGTTC +
Preference number: 4 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQGKLGA*VNFYLF
Trigger: GAACAGGTAAAAATTCACGCAGGCCCCAAGTTTGCC...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGCGTTGCCTGAAGGGCTaGACCCCAGAGCGGTGCATG +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAERCLKG*TPERCM
Trigger: CATGCACCGCTCTGGGGTCCAGCCCTTCAGGCAACG...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCACTAATAGCTGAGGGCTaGACACGATTTGATCTGGGC +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSLIAEG*TRFDLG
Trigger: GCCCAGATCAAATCGTGTCCAGCCCTCAGCTATTAG...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTTCTGCCGCAGCCCGATaGCCAGGCTGTTCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWASAAAR*PGCSVW
Trigger: CCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGA...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAGGCATTACAGGCGGCTaGGTATTCACATTTAGAGTC +
Preference number: 4 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSGITGG*VFTFRV
Trigger: GACTCTAAATGTGAATACCCAGCCGCCTGTAATGCC...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp TCAACCCCAGTTACGGAGACAGACACACCCAAGAAGGCCAAAATGGAGTGTGAAAACTTGGGGCCTGCGTaGATTTTTACCTGTTCCACT +
Preference number: 4 (lower is better)
Translates to: STPVTETDTPKKAKMECENLGPA*IFTCST
Trigger: AGTGGAACAGGTAAAAATTCACGCAGGCCCCAAGTT...TTCACACTCCATTTTGGCCTTCTTGGGTGTGTCTGTCTCCGTAACTGGGGTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGACAGAAGTCCCGCCTTaGAAAGCCCAGAGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAETEVPP*KAQRAA
Trigger: AGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGT...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTGACAGAAGGATCTCATaGCGCAGGCGCTGTTTGCCG +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWADRRIS*RRRCLP
Trigger: CGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTC...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGACTGTTGGGCTCGGCTaGAGGGACGACGGCATCGTT +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAETVGLG*RDDGIV
Trigger: AACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGT...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTCCTGAAGATCACTGTTaGGCTCGGCTGGAGGGACGA +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWAPEDHC*ARLEGR
Trigger: TCGTCCCTCCAGCCGAGCCCAACAGTGATCTTCAGG...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTCCAGACACCTTTGGGTaGGTCCCGTTGGCAATGACG +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWAPDTFG*VPLAMT
Trigger: CGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGG...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGTCCCTCAAGTCCTACTaGTCCCCGGGCGTGGATTCG +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAESLKSY*SPGVDS
Trigger: CGAATCCACGCCCGGGGACCAGTAGGACTTGAGGGA...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCACAGCTGAAATTTCTCTaGGGAACAGGGAGATTCTCG +
Preference number: 4 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSQLKFL*GTGRFS
Trigger: CGAGAATCTCCCTGTTCCCCAGAGAAATTTCAGCTG...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGATCATCTCTCGGCCCTaGTTCTGCAGCACCGAGACC +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAEIISRP*FCSTET
Trigger: GGTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGAT...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTTCCTGGGTCAGGAGGTaGAGAATGCGGTTGCTGTGT +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWASWVRR*RMRLLC
Trigger: ACACAGCAACCGCATTCTTCACCTCCTGACCCAGGA...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGTGCCCAGACACCTTTaGGTGGGTCCCGTTGGCAAT +
Preference number: 4 (lower is better)
Translates to: RRAFVKEMKLHVERLRMAVPRHL*VGPVGN
Trigger: ATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCAC...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTACTGGTCCCCGGGCGTaGATTCGAGATGTGCTGATT +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWATGPRA*IRDVLI
Trigger: AATCAGCACATCTCGAATCCACGCCCGGGGACCAGT...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGGGGCTGGACACGATTTaGTCTGGGCACAGCTATGGA +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAEGLDTI*SGHSYG
Trigger: TCCATAGCTGTGCCCAGATCAAATCGTGTCCAGCCC...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGCGGTTGCTGTGTaGGGCCTCCTTCCCACCTTT +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAENAVAV*GLLPTF
Trigger: AAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATT...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGTTCAGCTCACTTCGGTaGGCAAAGGGCTTGCCGTGG +
Preference number: 4 (lower is better)
Translates to: TVSNENVKGFKELALLKTFSSLR*AKGLPW
Trigger: CCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAA...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGGTGCCCAGACACCTTTaGGTGGGTCCCGTTGGCAAT +
Preference number: 4 (lower is better)
Translates to: TVSNENVKGFKELALLKTVPRHL*VGPVGN
Trigger: ATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCAC...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGCAGATGCCTTCGCTGTaGCCCATCACTGGGATCCCT +
Preference number: 4 (lower is better)
Translates to: TVSNENVKGFKELALLKTQMPSL*PITGIP
Trigger: AGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTG...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAGCATGTCAATGATCTaGTCAAATAAGGGTGTTCTC +
Preference number: 4 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVSMSMI*SNKGVL
Trigger: GAGAACACCCTTATTTGACCAGATCATTGACATGCT...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGGATAGAATATATCAATaGGCTTTGCATCATCTGAGC +
Preference number: 4 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQDRIYQ*ALHHLS
Trigger: GCTCAGATGATGCAAAGCTCATTGATATATTCTATC...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTACAATTCTCTTGGCGTaGTTCAGCTCACTTCGGTGG +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWATILLA*FSSLRW
Trigger: CCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGT...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGAGACCACGTGGTCTTaGCCTCGAAGCAACCACTTT +
Preference number: 4 (lower is better)
Translates to: RRAFVKEMKLHVERLRMAETTWS*PRSNHF
Trigger: AAAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTC...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTTCACTGGGATCCCTTTaGCAGCTTTCTGGATGTCTC +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWASLGSL*QLSGCL
Trigger: GAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGA...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAAAGTCCGAGACCACGTaGTCTTGCCCTCGAAGCAAC +
Preference number: 4 (lower is better)
Translates to: ELALLKTSFRKRNEITCRKSETT*SCPRSN
Trigger: GTTGCTTCGAGGGCAAGACCACGTGGTCTCGGACTT...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp AACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCGATAGAATATATCAATaGGCTTTGCATCATCTGAGC +
Preference number: 4 (lower is better)
Translates to: NFTDTPRSSPQWIQSVCLDRIYQ*ALHHLS
Trigger: GCTCAGATGATGCAAAGCTCATTGATATATTCTATC...GAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR GCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGTGGTCACCACGGCACTaGCGAGTTTCACTACAATTC +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAEWSPRH*RVSLQF
Trigger: GAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCA...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTAGCAGGCTTCACTTCTaGAAAGAAGGTGCCAACTTT +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWASRLHF*KEGANF
Trigger: AAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCT...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTAACTTGGGGCCTGCGTaGATTTTTACCTGTTCCACT +
Preference number: 4 (lower is better)
Translates to: RRAFVKEMKLHVERLRMANLGPA*IFTCST
Trigger: AGTGGAACAGGTAAAAATTCACGCAGGCCCCAAGTT...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGTTGGTCACCAAGATCTaGGCAGCACAGATGCTGTAC +
Preference number: 4 (lower is better)
Translates to: TVSNENVKGFKELALLKTLVTKI*AAQMLY
Trigger: GTACAGCATCTGTGCTGCCCAGATCTTGGTGACCAA...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTCCTCAACTTCTTCTCTaGTGTTTACCAGCTGTATGG +
Preference number: 4 (lower is better)
Translates to: SFRKRNEITCREAENGWAPQLLL*CLPAVW
Trigger: CCATACAGCTGGTAAACACCAGAGAAGAAGTTGAGG...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGGGTAGGAGGCAAACTTaGGGCCTGCGTGAATTTTTA +
Preference number: 4 (lower is better)
Translates to: LLKTSFRKRNEITCREAEGRRQT*GLREFL
Trigger: TAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACC...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTTCACTACAATTCTCTTaGCGTGCTTCAGCTCACTTC +
Preference number: 4 (lower is better)
Translates to: RRAFVKEMKLHVERLRMASLQFS*RASAHF
Trigger: GAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGA...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGGGTAGGAGGCAAACTTaGGGCCTGCGTGAATTTTTA +
Preference number: 4 (lower is better)
Translates to: TVSNENVKGFKELALLKTGRRQT*GLREFL
Trigger: TAAAAATTCACGCAGGCCCCAAGTTTGCCTCCTACC...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR TCA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAAGCAGGTCAGCCAGATaGTTGATAATTTCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: ELALLKTSFRKRNEITCRSRSAR*LIISAL
Trigger: GAGAGCTGAAATTATCAATCATCTGGCTGACCTGCT...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGATCACTACAATTCTCTTaGCGTGCTTCAGCTCACTTC +
Preference number: 4 (lower is better)
Translates to: ELALLKTSFRKRNEITCRSLQFS*RASAHF
Trigger: GAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGA...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CCA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTAGCATGTCAATGATCTaGTCAAATAAGGGTGTTCTC +
Preference number: 4 (lower is better)
Translates to: RRAFVKEMKLHVERLRMASMSMI*SNKGVL
Trigger: GAGAACACCCTTATTTGACCAGATCATTGACATGCT...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
3UTR CAA 72 bp TTGTCCTGGAGGTCGAGAATAGGATGTCAAAATAATTaGTATAAAAAGGTCAAGCATGATTGTAGATCTTCC +
Preference number: 4 (lower is better)
Translates to: LSWRSRIGCQNN*YKKVKHDCRSS
Trigger: GGAAGATCTACAATCATGCTTGACCTTTTTATACAAATTATTTTGACATCCTATTCTCGACCTCCAGGACAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp CGGCGCAGGACGCGGCCTACGCTCTCTTGTGAGGAGGCTGCGATCTaGCGCAGCCCGATGGCCAGGCTGTTCAGTTTGGACGTGGAGAGG +
Preference number: 5 (lower is better)
Translates to: RRRTRPTLSCEEAAI*RSPMARLFSLDVER
Trigger: CCTCTCCACGTCCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTCACAAGAGAGCGTAGGCCGCGTCCTGCGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp TTTGGCAATCCGAGTCCGGCGCAGGACGCGGCCTACGCTCTCTTGTaGGGAGGCTGCGATCTGCCGCAGCCCGATGGCCAGGCTGTTCAG +
Preference number: 5 (lower is better)
Translates to: FGNPSPAQDAAYALL*GGCDLPQPDGQAVQ
Trigger: CTGAACAGCCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTCACAAGAGAGCGTAGGCCGCGTCCTGCGCCGGACTCGGATTGCCAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp GCCGCACGCTCTGAGACAGAAGGATCTCATGGCGCAGGCGCTGTTTaGCGAAGGCGACGGCTCCACTGGTCACCAGCATCATCTCTCGGC +
Preference number: 5 (lower is better)
Translates to: AARSETEGSHGAGAV*RRRRLHWSPASSLG
Trigger: GCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp GGATCTCATGGCGCAGGCGCTGTTTGCCGAAGGCGACGGCTCCACTaGTCACCAGCATCATCTCTCGGCCCTGATTCTGCAGCACCGAGA +
Preference number: 5 (lower is better)
Translates to: GSHGAGAVCRRRRLH*SPASSLGPDSAAPR
Trigger: TCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 90 bp ACCTTTGGGTGGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTTaGAAAGCCCAGAGGGCGGCTTTCACCTTGGCTTCCATGCCCCCT +
Preference number: 5 (lower is better)
Translates to: TFGWVPLAMTTEVPP*KAQRAAFTLASMPP
Trigger: AGGGGGCATGGAAGCCAAGGTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp TCCTTCAGATGGTTCTGTCCTGAGTGCAGGGCTTGCCGCACGCTCTaGGACAGAAGGATCTCATGGCGCAGGCGCTGTTTGCCGAAGGCG +
Preference number: 5 (lower is better)
Translates to: SFRWFCPECRACRTL*DRRISWRRRCLPKA
Trigger: CGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000175932.2
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS TCA 90 bp GATCACTGTTGGGCTCGGCTGGAGGGACGACGGCATCGTTTGTGTTaGCGATGGGGACGATGTTCATGCGGAGCAGCTCGTGGAGGGTAC +
Preference number: 5 (lower is better)
Translates to: DHCWARLEGRRHRLC*RWGRCSCGAARGGY
Trigger: GTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACGCCTCCTTCCCACCTTaGAGCAACAAGCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDASFPP*SNKPLP
Trigger: TGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGC...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp CCGAAGGCGACGGCTCCACTGGTCACCAGCATCATCTCTCGGCCCTaGTTCTGCAGCACCGAGACCTGTTCAACAATAGATGCCAGGCGT +
Preference number: 5 (lower is better)
Translates to: PKATAPLVTSIISRP*FCSTETCSTIDARR
Trigger: ACGCCTGGCATCTATTGTTGAACAGGTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 90 bp CTGGTCACCACGGCACTGCCGAGTTTCACTACAATTCTCTTGGCGTaGTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCGTGGGCACGA +
Preference number: 5 (lower is better)
Translates to: LVTTALPSFTTILLA*FSSLRWAKGLPWAR
Trigger: TCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp CTCTTGGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCGTaGGCACGACTGAGGGGTACCGTGATAAAGGGGATGTTGCTCCAA +
Preference number: 5 (lower is better)
Translates to: LLACFSSLRWAKGLP*ARLRGTVIKGMLLQ
Trigger: TTGGAGCAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp CTCCTCTGGTCACCACGGCACTGCCGAGTTTCACTACAATTCTCTTaGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCGTGGG +
Preference number: 5 (lower is better)
Translates to: LLWSPRHCRVSLQFS*RASAHFGGQRACRG
Trigger: CCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp AGTCGGGTGACCTTGTCCACGCTGGCTTCGGAATCCACGTACATGTaGCAGATGCCTTCGCTGTGGCCCATCACTGGGATCCCTTTGGCA +
Preference number: 5 (lower is better)
Translates to: SRVTLSTLASESTYM*QMPSLWPITGIPLA
Trigger: TGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGGCCTCCTTCCCACCTTaGAGCAACAAGCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQRASFPP*SNKPLP
Trigger: TGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGC...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp TTTCCCTCCACGATGTCTGTGATGACGTGCCCAGACACCTTTGGGTaGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTTGCAAAGCC +
Preference number: 5 (lower is better)
Translates to: FPSTMSVMTCPDTFG*VPLAMTTEVPPCKA
Trigger: GGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp ATGCCTTCGCTGTGGCCCATCACTGGGATCCCTTTGGCAGCTTTCTaGATGTCTCTGACCAGCTGGGAGGAGCCTCGGGGAATGATCAGA +
Preference number: 5 (lower is better)
Translates to: MPSLWPITGIPLAAF*MSLTSWEEPRGMIR
Trigger: TCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp ACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCACGACAGAAGTCCCGCCTaGCAAAGCCCAGAGGGCGGC +
Preference number: 5 (lower is better)
Translates to: TDTPRSSPQWIQSVCLSHDRSPA*QSPEGG
Trigger: GCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTC...GTGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAGACAGAAGTCCCGCCTaGCAAAGCCCAGAGGGCGGC +
Preference number: 5 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSDRSPA*QSPEGG
Trigger: GCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTC...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACATCACTGGGATCCCTTaGGCAGCTTTCTGGATGTCT +
Preference number: 5 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDITGIP*AAFWMS
Trigger: AGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGAT...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGCGAGACCACGTGGTCTaGCCCTCGAAGCAACCACTT +
Preference number: 5 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQRDHVV*PSKQPL
Trigger: AAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTCG...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp CGATGGGGACGATGTTCATGCGGAGCAGCTCGTGGAGGGTACCGTTaGGATTTCTGCGCTTCTGCTCGTCGTGGAAATCCAGGTTGGTCA +
Preference number: 5 (lower is better)
Translates to: RWGRCSCGAARGGYR*DFCASARRGNPGWS
Trigger: TGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp GTCCCAGTGCCAGGCCACACTCATCTCCTCTGGTCACCACGGCACTaGCGAGTTTCACTACAATTCTCTTGGCGTGCTTCAGCTCACTTC +
Preference number: 5 (lower is better)
Translates to: VPVPGHTHLLWSPRH*RVSLQFSWRASAHF
Trigger: GAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGATGAGTGTGGCCTGGCACTGGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 90 bp ATGCGGAGCAGCTCGTGGAGGGTACCGTTGAGATTTCTGCGCTTCTaGTCGTCGTGGAAATCCAGGTTGGTCACCAAGATCTGGGCAGCA +
Preference number: 5 (lower is better)
Translates to: MRSSSWRVPLRFLRF*SSWKSRLVTKIWAA
Trigger: TGCTGCCCAGATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp ATAGCTGAGGGCTGGACACGATTTGATCTGGGCACAGCTATGGACTaGACCCATGGTAGAAGACGTTGCCTGAAGGGCTGGACCCCAGAG +
Preference number: 5 (lower is better)
Translates to: IAEGWTRFDLGTAMD*THGRRRCLKGWTPE
Trigger: CTCTGGGGTCCAGCCCTTCAGGCAACGTCTTCTACCATGGGTCCAGTCCATAGCTGTGCCCAGATCAAATCGTGTCCAGCCCTCAGCTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp CCGAGTTTCACTACAATTCTCTTGGCGTGCTTCAGCTCACTTCGGTaGGCAAAGGGCTTGCCGTGGGCACGACTGAGGGGTACCGTGATA +
Preference number: 5 (lower is better)
Translates to: PSFTTILLACFSSLR*AKGLPWARLRGTVI
Trigger: TATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 90 bp GGAATCCACGTACATGTGGCAGATGCCTTCGCTGTGGCCCATCACTaGGATCCCTTTGGCAGCTTTCTGGATGTCTCTGACCAGCTGGGA +
Preference number: 5 (lower is better)
Translates to: GIHVHVADAFAVAHH*DPFGSFLDVSDQLG
Trigger: TCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp CTTCAGCTCCCAGTCCAAAGCGGTAACCATCAGAGAAGCGAGTACTaGCGTTCCAGAAGACACAGGCGCTGTCCACGTGCTGGAGGAAGA +
Preference number: 5 (lower is better)
Translates to: LQLPVQSGNHQRSEY*RSRRHRRCPRAGGR
Trigger: TCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGGGAGCTGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGAGGCCCACTCTAGACTaGGTTCCAAATGTCACAGAC +
Preference number: 5 (lower is better)
Translates to: GSLWRSWSSLHVPDGAQRRPTLD*VPNVTD
Trigger: GTCTGTGACATTTGGAACCAAGTCTAGAGTGGGCCT...CCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGTTTGGGTGGGTCCCGTaGGCAATGACGACAGAAGTC +
Preference number: 5 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQFGWVP*AMTTEV
Trigger: GACTTCTGTCGTCATTGCCAACGGGACCCACCCAAA...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCCGTGCCCAGACACCTTaGGGTGGGTCCCGTTGGCAA +
Preference number: 5 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVRAQTP*GGSRWQ
Trigger: TTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACG...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp TTTCTTTCCCTCCACGATGTCTGTGATGACGTGCCCAGACACCTTTaGGTGGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTTGCAA +
Preference number: 5 (lower is better)
Translates to: FLSLHDVCDDVPRHL*VGPVGNDDRSPALQ
Trigger: TTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GAGGGACGAGATCAGGTTCTCTCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGTCGTGGAAATCCAGGTaGGTCACCAAGATCTGGGCA +
Preference number: 5 (lower is better)
Translates to: EGRDQVLSGDPGVASMCQSWKSR*VTKIWA
Trigger: TGCCCAGATCTTGGTGACCAACCTGGATTTCCACGA...CTGGCACATGGAGGCTACTCCAGGATCTCCAGAGAGAACCTGATCTCGTCCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp TCTAAGGTAGCCAGCATTCTCCCACCAGATCGAGCCATCTCCCCCTaGTGCTCCACTGTAGGACCAGCAGGCTTCACTTCTGAAAAGAAG +
Preference number: 5 (lower is better)
Translates to: SKVASILPPDRAISP*CSTVGPAGFTSEKK
Trigger: CTTCTTTTCAGAAGTGAAGCCTGCTGGTCCTACAGTGGAGCAGCAGGGGGAGATGGCTCGATCTGGTGGGAGAATGCTGGCTACCTTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp TCGTTTGTGTTGACGATGGGGACGATGTTCATGCGGAGCAGCTCGTaGAGGGTACCGTTGAGATTTCTGCGCTTCTGCTCGTCGTGGAAA +
Preference number: 5 (lower is better)
Translates to: SFVLTMGTMFMRSSS*RVPLRFLRFCSSWK
Trigger: TTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp AAGCGAGTACTGGCGTTCCAGAAGACACAGGCGCTGTCCACGTGCTaGAGGAAGAACTCCGCTGTTTTCTCGTTCTCTGTGACGATGACA +
Preference number: 5 (lower is better)
Translates to: KRVLAFQKTQALSTC*RKNSAVFSFSVTMT
Trigger: TGTCATCGTCACAGAGAACGAGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000175967.2
ENSMUST00000176939.8
CDS CCA 90 bp CTTTCTTACCCAGTCCAAAGCGGTAACCATCAGAGAAGCGAGTACTaGCGTTCCAGAAGACACAGGCGCTGTCCACGTGCTGGAGGAAGA +
Preference number: 5 (lower is better)
Translates to: LSYPVQSGNHQRSEY*RSRRHRRCPRAGGR
Trigger: TCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGGGTAAGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175967.2
CDS-3UTR CAA 90 bp GGGTCTACCTCTGATGTGAACAGACTGGGAAAAGCCAAGCCTCTCTGTCTCCAAGCCAGGCTGTTCAGTTaGGACGTGGAGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: GSTSDVNRLGKAKPLCLQARLFS*DVERLR
Trigger: CCTTAGCCTCTCCACGTCCAAACTGAACAGCCTGGC...TTGGAGACAGAGAGGCTTGGCTTTTCCCAGTCTGTTCACATCAGAGGTAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TCTGGAGATCCTGGAGTAGCCTCCATGTGCCAGACGGCGCACAACGGTCCCGACATCAGATCTATTATTTaGTCAAGGCGGCAGAGATCC +
Preference number: 5 (lower is better)
Translates to: SGDPGVASMCQTAHNGPDIRSII*SRRQRS
Trigger: GGATCTCTGCCGCCTTGACAAAATAATAGATCTGAT...GTCGGGACCGTTGTGCGCCGTCTGGCACATGGAGGCTACTCCAGGATCTCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp AAGAAGGTGCCAACTTTCTTTCCCTCCACGATGTCTGTGATGACGTaGCCAGACACCTTTGGGTGGGTCCCGTTGGCAATGACGACAGAA +
Preference number: 5 (lower is better)
Translates to: KKVPTFFPSTMSVMT*PDTFGWVPLAMTTE
Trigger: TTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp TATGGATGTGATCAATGGCTTCCTGGACGCTGTCCACCACTTCAATaGACACTTCCAGGTCCCCGTACTCCGTCCGGAGTGACTTCACTT +
Preference number: 5 (lower is better)
Translates to: YGCDQWLPGRCPPLQ*TLPGPRTPSGVTSL
Trigger: AAGTGAAGTCACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATCACATCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000175967.2
ENSMUST00000176939.8
CDS CCA 90 bp GTAAAACACCTATTGGGACAGTCACTTGTTCTAACTCCAGGTTTTTaGCAATCCGAGTCCGGCGCAGGACGCGGCCTACGCTCTCTTGTG +
Preference number: 5 (lower is better)
Translates to: VKHLLGQSLVLTPGF*QSESGAGRGLRSLV
Trigger: CACAAGAGAGCGTAGGCCGCGTCCTGCGCCGGACTCGGATTGCCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAGGTGTTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp CAGATCTCGGTGGATAAGCAACGTCTCCAGGGCATTACAGGCGGCTaGGTATTCACATTTAGAGTCTCTGACGAGTCGGGTGACCTTGTC +
Preference number: 5 (lower is better)
Translates to: QISVDKQRLQGITGG*VFTFRVSDESGDLV
Trigger: GACAAGGTCACCCGACTCGTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAAGGGCTGGACACGATTaGATCTGGGCACAGCTATGG +
Preference number: 5 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSRAGHD*IWAQLW
Trigger: CCATAGCTGTGCCCAGATCAAATCGTGTCCAGCCCT...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGAGGGCTGGACACGATTaGATCTGGGCACAGCTATGG +
Preference number: 5 (lower is better)
Translates to: LHRHTKVISPVDTVSLSQRAGHD*IWAQLW
Trigger: CCATAGCTGTGCCCAGATCAAATCGTGTCCAGCCCT...CTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp CATCTCCCCCTGCTGCTCCACTGTAGGACCAGCAGGCTTCACTTCTaGAAAGAAGGTGCCAACTTTCTTTCCCTCCACGATGTCTGTGAT +
Preference number: 5 (lower is better)
Translates to: HLPLLLHCRTSRLHF*KEGANFLSLHDVCD
Trigger: ATCACAGACATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTGGTCCTACAGTGGAGCAGCAGGGGGAGATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 90 bp GCTAACAGGATCTCTTCCCGCTGGTCCGTCAGCAGGTCAGCCAGATaGTTGATAATTTCAGCTCTCTGTTCAGGCTCTAAGGTAGCCAGC +
Preference number: 5 (lower is better)
Translates to: ANRISSRWSVSRSAR*LIISALCSGSKVAS
Trigger: GCTGGCTACCTTAGAGCCTGAACAGAGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 90 bp TACTTGAGGCTTCCATGCTCGGAGAAGTCCGAGACCACGTGGTCTTaGCCTCGAAGCAACCACTTTGTAGTTAGCAATCCCTCAAGTCCT +
Preference number: 5 (lower is better)
Translates to: YLRLPCSEKSETTWS*PRSNHFVVSNPSSP
Trigger: AGGACTTGAGGGATTGCTAACTACAAAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTCGGACTTCTCCGAGCATGGAAGCCTCAAGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp CACTTTGTAGTTAGCAATCCCTCAAGTCCTACTGGTCCCCGGGCGTaGATTCGAGATGTGCTGATTCCAACTTCAGCTCCCAGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: HFVVSNPSSPTGPRA*IRDVLIPTSAPSPK
Trigger: CTTTGGACTGGGAGCTGAAGTTGGAATCAGCACATCTCGAATCCACGCCCGGGGACCAGTAGGACTTGAGGGATTGCTAACTACAAAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TGTCCCCAGGCCGGAGACAGACTGCAGATGTCTAGGATGTGCGCCCATAACTTCCCAGTAAAACACCTATaGGGACAGTCACTTGTTCTA +
Preference number: 5 (lower is better)
Translates to: CPQAGDRLQMSRMCAHNFPVKHL*GQSLVL
Trigger: TAGAACAAGTGACTGTCCCAATAGGTGTTTTACTGG...GAAGTTATGGGCGCACATCCTAGACATCTGCAGTCTGTCTCCGGCCTGGGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 90 bp ATGTCAATGATCTGGTCAAATAAGGGTGTTCTCAGCAGATCTCGGTaGATAAGCAACGTCTCCAGGGCATTACAGGCGGCTGGGTATTCA +
Preference number: 5 (lower is better)
Translates to: MSMIWSNKGVLSRSR*ISNVSRALQAAGYS
Trigger: TGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp TCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCTTCACTACAATTCTCTaGGCGTGCTTCAGCTCACTT +
Preference number: 5 (lower is better)
Translates to: SQTHQGHLPSGYSQSVSVFTTIL*ACFSSL
Trigger: AAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAA...GACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGACGTGCCCAGACACCTTaGGGTGGGTCCCGTTGGCAA +
Preference number: 5 (lower is better)
Translates to: ELALLKTSFRKRNEITCRRAQTP*GGSRWQ
Trigger: TTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACG...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GACAGCCTGGCAGTGGAGCATTTGCCTACCATGTGCAAGGCCCTAGATTCAACCTCCTCCAAATCTTTTTaGTTGGCTAACAGGATCTCT +
Preference number: 5 (lower is better)
Translates to: DSLAVEHLPTMCKALDSTSSKSF*LANRIS
Trigger: AGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGA...GGTTGAATCTAGGGCCTTGCACATGGTAGGCAAATGCTCCACTGCCAGGCTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp ACTTCACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTGATAAAGGGGATGTaGCTCCAAGAACGAACATGT +
Preference number: 5 (lower is better)
Translates to: TSQTHQGHLPSGYSQSVSVIKGM*LQERTC
Trigger: ACATGTTCGTTCTTGGAGCAACATCCCCTTTATCAC...TGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CACAGACACACCAAGGTCATCTCCCCAGTGGATACAGTCAGTCTGTCTCAGTCAATCAGATCTATTATTTaGTCAAGGCGGCAGAGATCC +
Preference number: 5 (lower is better)
Translates to: HRHTKVISPVDTVSLSQSIRSII*SRRQRS
Trigger: GGATCTCTGCCGCCTTGACAAAATAATAGATCTGAT...TGACTGAGACAGACTGACTGTATCCACTGGGGAGATGACCTTGGTGTGTCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTCGAGACCACGTGGTCTaGCCCTCGAAGCAACCACTT +
Preference number: 5 (lower is better)
Translates to: RRAFVKEMKLHVERLRMARDHVV*PSKQPL
Trigger: AAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTCG...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGTTTGGGTGGGTCCCGTaGGCAATGACGACAGAAGTC +
Preference number: 5 (lower is better)
Translates to: LLKTSFRKRNEITCREAEFGWVP*AMTTEV
Trigger: GACTTCTGTCGTCATTGCCAACGGGACCCACCCAAA...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp GAGTTAGCCCTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGCCAGGCTGTTCAGTTaGGACGTGGAGAGGCTAAGG +
Preference number: 5 (lower is better)
Translates to: ELALLKTSFRKRNEITCRARLFS*DVERLR
Trigger: CCTTAGCCTCTCCACGTCCAAACTGAACAGCCTGGC...TCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAGGGCTAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGTCGTGGAAATCCAGGTaGGTCACCAAGATCTGGGCA +
Preference number: 5 (lower is better)
Translates to: TVSNENVKGFKELALLKTSWKSR*VTKIWA
Trigger: TGCCCAGATCTTGGTGACCAACCTGGATTTCCACGA...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp AGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTAGGCCCACTCTAGACTaGGTTCCAAATGTCACAGAC +
Preference number: 5 (lower is better)
Translates to: RRAFVKEMKLHVERLRMARPTLD*VPNVTD
Trigger: GTCTGTGACATTTGGAACCAAGTCTAGAGTGGGCCT...AGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp AGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGAATGGCTGGGCTGTGATAAAGGGGATGTaGCTCCAAGAACGAACATGT +
Preference number: 5 (lower is better)
Translates to: SFRKRNEITCREAENGWAVIKGM*LQERTC
Trigger: ACATGTTCGTTCTTGGAGCAACATCCCCTTTATCAC...AGCCCAGCCATTCTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGATCACTGGGATCCCTTaGGCAGCTTTCTGGATGTCT +
Preference number: 5 (lower is better)
Translates to: TVSNENVKGFKELALLKTITGIP*AAFWMS
Trigger: AGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGAT...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp CTCCTTAAGACGAGCTTTCGTAAAAGAAATGAAATTACATGTCGAGAGGCTGAGTCCTCCAAATCTTTTTaGTTGGCTAACAGGATCTCT +
Preference number: 5 (lower is better)
Translates to: LLKTSFRKRNEITCREAESSKSF*LANRIS
Trigger: AGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGA...CTCAGCCTCTCGACATGTAATTTCATTTCTTTTACGAAAGCTCGTCTTAAGGAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS-3UTR CAA 90 bp ACCGTTTCCAATGAAAATGTTAAAGGTTTTAAGGAGTTAGCCCTCCTTAAGACGCCAGTAAAACACCTATaGGGACAGTCACTTGTTCTA +
Preference number: 5 (lower is better)
Translates to: TVSNENVKGFKELALLKTPVKHL*GQSLVL
Trigger: TAGAACAAGTGACTGTCCCAATAGGTGTTTTACTGG...CGTCTTAAGGAGGGCTAACTCCTTAAAACCTTTAACATTTTCATTGGAAACGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CCGAGTCCGGCGCAGGACGCGGCCTACGCTCTCTTGTaGGGAGGCTGCGATCTGCCGCAGCCCGATGGCCAG +
Preference number: 6 (lower is better)
Translates to: PSPAQDAAYALL*GGCDLPQPDGQ
Trigger: CTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTCACAAGAGAGCGTAGGCCGCGTCCTGCGCCGGACTCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp GCGATCTGCCGCAGCCCGATGGCCAGGCTGTTCAGTTaGGACGTGGAGAGGCTAAGGCGCTTCAGCAGGGGG +
Preference number: 6 (lower is better)
Translates to: AICRSPMARLFS*DVERLRRFSRG
Trigger: CCCCCTGCTGAAGCGCCTTAGCCTCTCCACGTCCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGATCGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp GAGGAGGCTGCGATCTGCCGCAGCCCGATGGCCAGGCTGTTCAGTTaGGACGTGGAGAGGCTAAGGCGCTTCAGCAGGGGGCTGGCAAGT +
Preference number: 6 (lower is better)
Translates to: EEAAICRSPMARLFS*DVERLRRFSRGLAS
Trigger: ACTTGCCAGCCCCCTGCTGAAGCGCCTTAGCCTCTCCACGTCCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp ACGCGGCCTACGCTCTCTTGTGAGGAGGCTGCGATCTaGCGCAGCCCGATGGCCAGGCTGTTCAGTTTGGAC +
Preference number: 6 (lower is better)
Translates to: TRPTLSCEEAAI*RSPMARLFSLD
Trigger: GTCCAAACTGAACAGCCTGGCCATCGGGCTGCGGCAGATCGCAGCCTCCTCACAAGAGAGCGTAGGCCGCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp GGCGCAGGCGCTGTTTGCCGAAGGCGACGGCTCCACTaGTCACCAGCATCATCTCTCGGCCCTGATTCTGCA +
Preference number: 6 (lower is better)
Translates to: GAGAVCRRRRLH*SPASSLGPDSA
Trigger: TGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CAA 90 bp CACCTTTGGGTGGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTaGCAAAGCCCAGAGGGCGGCTTTCACCTTGGCTTCCATGCCCCC +
Preference number: 6 (lower is better)
Translates to: HLWVGPVGNDDRSPA*QSPEGGFHLGFHAP
Trigger: GGGGGCATGGAAGCCAAGGTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CGTGCCCAGACACCTTTGGGTGGGTCCCGTTGGCAATaGCGACAGAAGTCCCGCCTTGCAAAGCCCAGAGGG +
Preference number: 6 (lower is better)
Translates to: RAQTPLGGSRWQ*RQKSRLAKPRG
Trigger: CCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp TGGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTTaGAAAGCCCAGAGGGCGGCTTTCACCTTGGCTTCC +
Preference number: 6 (lower is better)
Translates to: WVPLAMTTEVPP*KAQRAAFTLAS
Trigger: GGAAGCCAAGGTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp GTGGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCTaGCAAAGCCCAGAGGGCGGCTTTCACCTTGGCTTC +
Preference number: 6 (lower is better)
Translates to: VGPVGNDDRSPA*QSPEGGFHLGF
Trigger: GAAGCCAAGGTGAAAGCCGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp ACGATGTCTGTGATGACGTGCCCAGACACCTTTGGGTGGGTCCCGTaGGCAATGACGACAGAAGTCCCGCCTTGCAAAGCCCAGAGGGCG +
Preference number: 6 (lower is better)
Translates to: TMSVMTCPDTFGWVP*AMTTEVPPCKAQRA
Trigger: CGCCCTCTGGGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp TGGTTCTGTCCTGAGTGCAGGGCTTGCCGCACGCTCTaGGACAGAAGGATCTCATGGCGCAGGCGCTGTTTG +
Preference number: 6 (lower is better)
Translates to: WFCPECRACRTL*DRRISWRRRCL
Trigger: CAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000175932.2
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS TCA 72 bp CGTACTCCGTCCGGAGTGACTTCACTTCTGAGGGGCTaGAGGTCAGGTAGGAGGCAAACTTGGGGCCTGCGT +
Preference number: 6 (lower is better)
Translates to: RTPSGVTSLLRG*RSGRRQTWGLR
Trigger: ACGCAGGCCCCAAGTTTGCCTCCTACCTGACCTTCAGCCCCTCAGAAGTGAAGTCACTCCGGACGGAGTACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp GGCACAGCTATGGACTGGACCCATGGTAGAAGACGTTaGCTGAAGGGCTGGACCCCAGAGCGGTGCATGTGT +
Preference number: 6 (lower is better)
Translates to: GTAMDWTHGRRR*LKGWTPERCMC
Trigger: ACACATGCACCGCTCTGGGGTCCAGCCCTTCAGGCAACGTCTTCTACCATGGGTCCAGTCCATAGCTGTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 72 bp TCTGAGACAGAAGGATCTCATGGCGCAGGCGCTGTTTaGCGAAGGCGACGGCTCCACTGGTCACCAGCATCA +
Preference number: 6 (lower is better)
Translates to: SETEGSHGAGAV*RRRRLHWSPAS
Trigger: TGATGCTGGTGACCAGTGGAGCCGTCGCCTTCGGCAAACAGCGCCTGCGCCATGAGATCCTTCTGTCTCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000175932.2
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS CCA 72 bp TGCTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCGTaGGCACGACTGAGGGGTACCGTGATAAAGGGGATG +
Preference number: 6 (lower is better)
Translates to: CFSSLRWAKGLP*ARLRGTVIKGM
Trigger: CATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 72 bp CGGGCCTCTAAGACCGGAATTGCCATCTCCTTCAGATaGTTCTGTCCTGAGTGCAGGGCTTGCCGCACGCTC +
Preference number: 6 (lower is better)
Translates to: RASKTGIAISFR*FCPECRACRTL
Trigger: GAGCGTGCGGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATGGCAATTCCGGTCTTAGAGGCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000175932.2
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS CAA 72 bp TTGGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCTaGCCGTGGGCACGACTGAGGGGTACCGTGATAAAG +
Preference number: 6 (lower is better)
Translates to: LACFSSLRWAKG*PWARLRGTVIK
Trigger: CTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CAA 72 bp GTGATGACGTGCCCAGACACCTTTGGGTGGGTCCCGTaGGCAATGACGACAGAAGTCCCGCCTTGCAAAGCC +
Preference number: 6 (lower is better)
Translates to: VMTCPDTFGWVP*AMTTEVPPCKA
Trigger: GGCTTTGCAAGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp TGTGCGGCCTCCTTCCCACCTTTGAGCAACAAGCCATaGCCACTGGCAATAGCCAAGGCTGCCACCTGGGGT +
Preference number: 6 (lower is better)
Translates to: CAASFPPLSNKP*PLAIAKAATWG
Trigger: ACCCCAGGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp CACTCTGTCCAGCAGCTGCACAGGCTCGGGCCTCTAAGACCGGAATaGCCATCTCCTTCAGATGGTTCTGTCCTGAGTGCAGGGCTTGCC +
Preference number: 6 (lower is better)
Translates to: HSVQQLHRLGPLRPE*PSPSDGSVLSAGLA
Trigger: GGCAAGCCCTGCACTCAGGACAGAACCATCTGAAGGAGATGGCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTGGACAGAGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS CAA 90 bp AGATCACTGTTGGGCTCGGCTGGAGGGACGACGGCATCGTTTGTGTaGACGATGGGGACGATGTTCATGCGGAGCAGCTCGTGGAGGGTA +
Preference number: 6 (lower is better)
Translates to: RSLLGSAGGTTASFV*TMGTMFMRSSSWRV
Trigger: TACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAACACAAACGATGCCGTCGTCCCTCCAGCCGAGCCCAACAGTGATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp CGGTTGCTGTGTGCGGCCTCCTTCCCACCTTTGAGCAACAAGCCATaGCCACTGGCAATAGCCAAGGCTGCCACCTGGGGTAGACAGTCA +
Preference number: 6 (lower is better)
Translates to: RLLCAASFPPLSNKP*PLAIAKAATWGRQS
Trigger: TGACTGTCTACCCCAGGTGGCAGCCTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp TACATGTGGCAGATGCCTTCGCTGTGGCCCATCACTGGGATCCCTTaGGCAGCTTTCTGGATGTCTCTGACCAGCTGGGAGGAGCCTCGG +
Preference number: 6 (lower is better)
Translates to: YMWQMPSLWPITGIP*AAFWMSLTSWEEPR
Trigger: CCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp TCTCCTCTGGTCACCACGGCACTGCCGAGTTTCACTACAATTCTCTaGGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCGTGG +
Preference number: 6 (lower is better)
Translates to: SPLVTTALPSFTTIL*ACFSSLRWAKGLPW
Trigger: CCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGACCAGAGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS TCA 72 bp CAGCTATGGACTGGACCCATGGTAGAAGACGTTGCCTaGAGGGCTGGACCCCAGAGCGGTGCATGTGTCTCA +
Preference number: 6 (lower is better)
Translates to: QLWTGPMVEDVA*RAGPQSGACVS
Trigger: TGAGACACATGCACCGCTCTGGGGTCCAGCCCTTCAGGCAACGTCTTCTACCATGGGTCCAGTCCATAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 72 bp GATCAATGGCTTCCTGGACGCTGTCCACCACTTCAATaGACACTTCCAGGTCCCCGTACTCCGTCCGGAGTG +
Preference number: 6 (lower is better)
Translates to: DQWLPGRCPPLQ*TLPGPRTPSGV
Trigger: CACTCCGGACGGAGTACGGGGACCTGGAAGTGTGCATTGAAGTGGTGGACAGCGTCCAGGAAGCCATTGATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000175967.2
ENSMUST00000176939.8
CDS CCA 72 bp ACTACAATTCTCTTGGCGTGCTTCAGCTCACTTCGGTaGGCAAAGGGCTTGCCGTGGGCACGACTGAGGGGT +
Preference number: 6 (lower is better)
Translates to: TTILLACFSSLR*AKGLPWARLRG
Trigger: ACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 72 bp ACGATGTCTGTGATGACGTGCCCAGACACCTTTGGGTaGGTCCCGTTGGCAATGACGACAGAAGTCCCGCCT +
Preference number: 6 (lower is better)
Translates to: TMSVMTCPDTFG*VPLAMTTEVPP
Trigger: AGGCGGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp CTCCACGATGTCTGTGATGACGTGCCCAGACACCTTTaGGTGGGTCCCGTTGGCAATGACGACAGAAGTCCC +
Preference number: 6 (lower is better)
Translates to: LHDVCDDVPRHL*VGPVGNDDRSP
Trigger: GGGACTTCTGTCGTCATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp ACCTTGTCCACGCTGGCTTCGGAATCCACGTACATGTaGCAGATGCCTTCGCTGTGGCCCATCACTGGGATC +
Preference number: 6 (lower is better)
Translates to: TLSTLASESTYM*QMPSLWPITGI
Trigger: GATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp CAGATGCCTTCGCTGTGGCCCATCACTGGGATCCCTTaGGCAGCTTTCTGGATGTCTCTGACCAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: QMPSLWPITGIP*AAFWMSLTSWE
Trigger: CTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp ACAATTCTCTTGGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCTaGCCGTGGGCACGACTGAGGGGTACCGTGATAAAGGGGATGTTG +
Preference number: 6 (lower is better)
Translates to: TILLACFSSLRWAKG*PWARLRGTVIKGML
Trigger: CAACATCCCCTTTATCACGGTACCCCTCAGTCGTGCCCACGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CAA 90 bp ACGATGGGGACGATGTTCATGCGGAGCAGCTCGTGGAGGGTACCGTaGAGATTTCTGCGCTTCTGCTCGTCGTGGAAATCCAGGTTGGTC +
Preference number: 6 (lower is better)
Translates to: TMGTMFMRSSSWRVP*RFLRFCSSWKSRLV
Trigger: GACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp GTCCTACTGGTCCCCGGGCGTGGATTCGAGATGTGCTaGTTCCAACTTCAGCTCCCAGTCCAAAGCGGTAAC +
Preference number: 6 (lower is better)
Translates to: VLLVPGRGFEMC*FQLQLPVQSGN
Trigger: GTTACCGCTTTGGACTGGGAGCTGAAGTTGGAATCAGCACATCTCGAATCCACGCCCGGGGACCAGTAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp ACGGCACTGCCGAGTTTCACTACAATTCTCTTGGCGTaGTTCAGCTCACTTCGGTGGGCAAAGGGCTTGCCG +
Preference number: 6 (lower is better)
Translates to: TALPSFTTILLA*FSSLRWAKGLP
Trigger: CGGCAAGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 72 bp CTGATTCTGCAGCACCGAGACCTGTTCAACAATAGATaGCAGGCGTCCCAGTGCCAGGCCACACTCATCTCC +
Preference number: 6 (lower is better)
Translates to: LILQHRDLFNNR*QASQCQATLIS
Trigger: GGAGATGAGTGTGGCCTGGCACTGGGACGCCTGGCATCTATTGTTGAACAGGTCTCGGTGCTGCAGAATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 72 bp CTCCTGGGTCAGGAGGTGAAGAATGCGGTTGCTGTGTaGGGCCTCCTTCCCACCTTTGAGCAACAAGCCATT +
Preference number: 6 (lower is better)
Translates to: LLGQEVKNAVAV*GLLPTFEQQAI
Trigger: AATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCTTCACCTCCTGACCCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp GGCTGGACACGATTTGATCTGGGCACAGCTATGGACTaGACCCATGGTAGAAGACGTTGCCTGAAGGGCTGG +
Preference number: 6 (lower is better)
Translates to: GWTRFDLGTAMD*THGRRRCLKGW
Trigger: CCAGCCCTTCAGGCAACGTCTTCTACCATGGGTCCAGTCCATAGCTGTGCCCAGATCAAATCGTGTCCAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 72 bp TTGACGATGGGGACGATGTTCATGCGGAGCAGCTCGTaGAGGGTACCGTTGAGATTTCTGCGCTTCTGCTCG +
Preference number: 6 (lower is better)
Translates to: LTMGTMFMRSSS*RVPLRFLRFCS
Trigger: CGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGTCCCCATCGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp CTATTGGGACAGTCACTTGTTCTAACTCCAGGTTTTTaGCAATCCGAGTCCGGCGCAGGACGCGGCCTACGC +
Preference number: 6 (lower is better)
Translates to: LLGQSLVLTPGF*QSESGAGRGLR
Trigger: GCGTAGGCCGCGTCCTGCGCCGGACTCGGATTGCCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp TCGGAATCCACGTACATGTGGCAGATGCCTTCGCTGTaGCCCATCACTGGGATCCCTTTGGCAGCTTTCTGG +
Preference number: 6 (lower is better)
Translates to: SESTYMWQMPSL*PITGIPLAAFW
Trigger: CCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTACGTGGATTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp CCAGTCCAAAGCGGTAACCATCAGAGAAGCGAGTACTaGCGTTCCAGAAGACACAGGCGCTGTCCACGTGCT +
Preference number: 6 (lower is better)
Translates to: PVQSGNHQRSEY*RSRRHRRCPRA
Trigger: AGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTACTCGCTTCTCTGATGGTTACCGCTTTGGACTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000175967.2
ENSMUST00000176939.8
CDS CAA 72 bp GTCACCACGGCACTGCCGAGTTTCACTACAATTCTCTaGGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGC +
Preference number: 6 (lower is better)
Translates to: VTTALPSFTTIL*ACFSSLRWAKG
Trigger: GCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CAA 72 bp CAGCAGCTGCACAGGCTCGGGCCTCTAAGACCGGAATaGCCATCTCCTTCAGATGGTTCTGTCCTGAGTGCA +
Preference number: 6 (lower is better)
Translates to: QQLHRLGPLRPE*PSPSDGSVLSA
Trigger: TGCACTCAGGACAGAACCATCTGAAGGAGATGGCAATTCCGGTCTTAGAGGCCCGAGCCTGTGCAGCTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
ENSMUST00000176955.8
CDS CAA 72 bp CCTATTGGGACAGTCACTTGTTCTAACTCCAGGTTTTaGGCAATCCGAGTCCGGCGCAGGACGCGGCCTACG +
Preference number: 6 (lower is better)
Translates to: PIGTVTCSNSRF*AIRVRRRTRPT
Trigger: CGTAGGCCGCGTCCTGCGCCGGACTCGGATTGCCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp ACTTCTTCTCTGGTGTTTACCAGCTGTATGGCCTCCTaGACTCCGTGGATGGAGAGGGCCTCCTGGGTCAGG +
Preference number: 6 (lower is better)
Translates to: TSSLVFTSCMAS*TPWMERASWVR
Trigger: CCTGACCCAGGAGGCCCTCTCCATCCACGGAGTCAAGGAGGCCATACAGCTGGTAAACACCAGAGAAGAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp AGCAGGGGGCTGGCAAGTCTTCCCTCTGCCTCCTCCAAATCTTTTTaGTTGGCTAACAGGATCTCTTCCCGCTGGTCCGTCAGCAGGTCA +
Preference number: 6 (lower is better)
Translates to: SRGLASLPSASSKSF*LANRISSRWSVSRS
Trigger: TGACCTGCTGACGGACCAGCGGGAAGAGATCCTGTTAGCCAACAAAAAAGATTTGGAGGAGGCAGAGGGAAGACTTGCCAGCCCCCTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CGATGTTCATGCGGAGCAGCTCGTGGAGGGTACCGTTaGGATTTCTGCGCTTCTGCTCGTCGTGGAAATCCA +
Preference number: 6 (lower is better)
Translates to: RCSCGAARGGYR*DFCASARRGNP
Trigger: TGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp CCAACTTTCTTTCCCTCCACGATGTCTGTGATGACGTaGCCAGACACCTTTGGGTGGGTCCCGTTGGCAATG +
Preference number: 6 (lower is better)
Translates to: PTFFPSTMSVMT*PDTFGWVPLAM
Trigger: CATTGCCAACGGGACCCACCCAAAGGTGTCTGGGCACGTCATCACAGACATCGTGGAGGGAAAGAAAGTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp GTACTGGCGTTCCAGAAGACACAGGCGCTGTCCACGTaGTGGAGGAAGAACTCCGCTGTTTTCTCGTTCTCT +
Preference number: 6 (lower is better)
Translates to: VLAFQKTQALST*WRKNSAVFSFS
Trigger: AGAGAACGAGAAAACAGCGGAGTTCTTCCTCCAGCACGTGGACAGCGCCTGTGTCTTCTGGAACGCCAGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000175967.2
ENSMUST00000176939.8
CDS CCA 72 bp TCACCACGGCACTGCCGAGTTTCACTACAATTCTCTTaGCGTGCTTCAGCTCACTTCGGTGGGCAAAGGGCT +
Preference number: 6 (lower is better)
Translates to: SPRHCRVSLQFS*RASAHFGGQRA
Trigger: AGCCCTTTGCCCACCGAAGTGAGCTGAAGCACGCCAAGAGAATTGTAGTGAAACTCGGCAGTGCCGTGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS CCA 72 bp GTACATGTGGCAGATGCCTTCGCTGTGGCCCATCACTaGGATCCCTTTGGCAGCTTTCTGGATGTCTCTGAC +
Preference number: 6 (lower is better)
Translates to: VHVADAFAVAHH*DPFGSFLDVSD
Trigger: GTCAGAGACATCCAGAAAGCTGCCAAAGGGATCCCAGTGATGGGCCACAGCGAAGGCATCTGCCACATGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp ACGATGTTCATGCGGAGCAGCTCGTGGAGGGTACCGTaGAGATTTCTGCGCTTCTGCTCGTCGTGGAAATCC +
Preference number: 6 (lower is better)
Translates to: TMFMRSSSWRVP*RFLRFCSSWKS
Trigger: GGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCTGCTCCGCATGAACATCGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp AGAATGCGGTTGCTGTGTGCGGCCTCCTTCCCACCTTaGAGCAACAAGCCATTGCCACTGGCAATAGCCAAG +
Preference number: 6 (lower is better)
Translates to: RMRLLCAASFPP*SNKPLPLAIAK
Trigger: CTTGGCTATTGCCAGTGGCAATGGCTTGTTGCTCAAAGGTGGGAAGGAGGCCGCACACAGCAACCGCATTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp ACGGCTCCACTGGTCACCAGCATCATCTCTCGGCCCTaGTTCTGCAGCACCGAGACCTGTTCAACAATAGAT +
Preference number: 6 (lower is better)
Translates to: TAPLVTSIISRP*FCSTETCSTID
Trigger: ATCTATTGTTGAACAGGTCTCGGTGCTGCAGAATCAGGGCCGAGAGATGATGCTGGTGACCAGTGGAGCCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025979.13
ENSMUST00000149476.3
ENSMUST00000176939.8
CDS GCA 72 bp AGCTCGTGGAGGGTACCGTTGAGATTTCTGCGCTTCTaGTCGTCGTGGAAATCCAGGTTGGTCACCAAGATC +
Preference number: 6 (lower is better)
Translates to: SSWRVPLRFLRF*SSWKSRLVTKI
Trigger: GATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCTCCACGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS GCA 72 bp CTTCCATGCTCGGAGAAGTCCGAGACCACGTGGTCTTaGCCTCGAAGCAACCACTTTGTAGTTAGCAATCCC +
Preference number: 6 (lower is better)
Translates to: LPCSEKSETTWS*PRSNHFVVSNP
Trigger: GGGATTGCTAACTACAAAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTCGGACTTCTCCGAGCATGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp AGGGTACCGTTGAGATTTCTGCGCTTCTGCTCGTCGTaGAAATCCAGGTTGGTCACCAAGATCTGGGCAGCA +
Preference number: 6 (lower is better)
Translates to: RVPLRFLRFCSS*KSRLVTKIWAA
Trigger: TGCTGCCCAGATCTTGGTGACCAACCTGGATTTCCACGACGAGCAGAAGCGCAGAAATCTCAACGGTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp TTGAGGCTTCCATGCTCGGAGAAGTCCGAGACCACGTaGTCTTGCCCTCGAAGCAACCACTTTGTAGTTAGC +
Preference number: 6 (lower is better)
Translates to: LRLPCSEKSETT*SCPRSNHFVVS
Trigger: GCTAACTACAAAGTGGTTGCTTCGAGGGCAAGACCACGTGGTCTCGGACTTCTCCGAGCATGGAAGCCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp TTCTCTGGGGAACAGGGAGATTCTCGTGAAGATACTTaGGGCTTCCATGCTCGGAGAAGTCCGAGACCACGT +
Preference number: 6 (lower is better)
Translates to: FSGEQGDSREDT*GFHARRSPRPR
Trigger: ACGTGGTCTCGGACTTCTCCGAGCATGGAAGCCTCAAGTATCTTCACGAGAATCTCCCTGTTCCCCAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp GTGGATAAGCAACGTCTCCAGGGCATTACAGGCGGCTaGGTATTCACATTTAGAGTCTCTGACGAGTCGGGT +
Preference number: 6 (lower is better)
Translates to: VDKQRLQGITGG*VFTFRVSDESG
Trigger: ACCCGACTCGTCAGAGACTCTAAATGTGAATACCCAGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp AGTAAAACACCTATTGGGACAGTCACTTGTTCTAACTCCAGGTTTTaGGCAATCCGAGTCCGGCGCAGGACGCGGCCTACGCTCTCTTGT +
Preference number: 6 (lower is better)
Translates to: SKTPIGTVTCSNSRF*AIRVRRRTRPTLSC
Trigger: ACAAGAGAGCGTAGGCCGCGTCCTGCGCCGGACTCGGATTGCCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAGGTGTTTTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CTGCTGCTCCACTGTAGGACCAGCAGGCTTCACTTCTaGAAAGAAGGTGCCAACTTTCTTTCCCTCCACGAT +
Preference number: 6 (lower is better)
Translates to: LLLHCRTSRLHF*KEGANFLSLHD
Trigger: ATCGTGGAGGGAAAGAAAGTTGGCACCTTCTTTTCAGAAGTGAAGCCTGCTGGTCCTACAGTGGAGCAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp ATCTGGTCAAATAAGGGTGTTCTCAGCAGATCTCGGTaGATAAGCAACGTCTCCAGGGCATTACAGGCGGCT +
Preference number: 6 (lower is better)
Translates to: IWSNKGVLSRSR*ISNVSRALQAA
Trigger: AGCCGCCTGTAATGCCCTGGAGACGTTGCTTATCCACCGAGATCTGCTGAGAACACCCTTATTTGACCAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp TATTCACATTTAGAGTCTCTGACGAGTCGGGTGACCTaGTCCACGCTGGCTTCGGAATCCACGTACATGTGG +
Preference number: 6 (lower is better)
Translates to: YSHLESLTSRVT*STLASESTYMW
Trigger: CCACATGTACGTGGATTCCGAAGCCAGCGTGGACAAGGTCACCCGACTCGTCAGAGACTCTAAATGTGAATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp CTGACCAGCTGGGAGGAGCCTCGGGGAATGATCAGATCTATTATTTaGTCAAGGCGGCAGAGATCCTCAACTTCTTCTCTGGTGTTTACC +
Preference number: 6 (lower is better)
Translates to: LTSWEEPRGMIRSII*SRRQRSSTSSLVFT
Trigger: GGTAAACACCAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp ATCTCTTCCCGCTGGTCCGTCAGCAGGTCAGCCAGATaGTTGATAATTTCAGCTCTCTGTTCAGGCTCTAAG +
Preference number: 6 (lower is better)
Translates to: ISSRWSVSRSAR*LIISALCSGSK
Trigger: CTTAGAGCCTGAACAGAGAGCTGAAATTATCAATCATCTGGCTGACCTGCTGACGGACCAGCGGGAAGAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CAGCTGAAATTTCTCTGGGGAACAGGGAGATTCTCGTaGAGATACTTGAGGCTTCCATGCTCGGAGAAGTCC +
Preference number: 6 (lower is better)
Translates to: QLKFLWGTGRFS*RYLRLPCSEKS
Trigger: GGACTTCTCCGAGCATGGAAGCCTCAAGTATCTTCACGAGAATCTCCCTGTTCCCCAGAGAAATTTCAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CCA 72 bp ATCCCTTTGGCAGCTTTCTGGATGTCTCTGACCAGCTaGGAGGAGCCTCGGGGAATGATCAGATCTATTATT +
Preference number: 6 (lower is better)
Translates to: IPLAAFWMSLTS*EEPRGMIRSII
Trigger: AATAATAGATCTGATCATTCCCCGAGGCTCCTCCCAGCTGGTCAGAGACATCCAGAAAGCTGCCAAAGGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp TGGGAGGAGCCTCGGGGAATGATCAGATCTATTATTTaGTCAAGGCGGCAGAGATCCTCAACTTCTTCTCTG +
Preference number: 6 (lower is better)
Translates to: WEEPRGMIRSII*SRRQRSSTSSL
Trigger: CAGAGAAGAAGTTGAGGATCTCTGCCGCCTTGACAAAATAATAGATCTGATCATTCCCCGAGGCTCCTCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 90 bp GTAGACAGTCAGGGCGAGACTCAAAGATCACCAGTAAAACACCTATaGGGACAGTCACTTGTTCTAACTCCAGGTTTTTGGCAATCCGAG +
Preference number: 6 (lower is better)
Translates to: VDSQGETQRSPVKHL*GQSLVLTPGFWQSE
Trigger: CTCGGATTGCCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAGGTGTTTTACTGGTGATCTTTGAGTCTCGCCCTGACTGTCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS CAA 72 bp CAGGGCGAGACTCAAAGATCACCAGTAAAACACCTATaGGGACAGTCACTTGTTCTAACTCCAGGTTTTTGG +
Preference number: 6 (lower is better)
Translates to: QGETQRSPVKHL*GQSLVLTPGFW
Trigger: CCAAAAACCTGGAGTTAGAACAAGTGACTGTCCCAATAGGTGTTTTACTGGTGATCTTTGAGTCTCGCCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8
CDS TCA 72 bp CGTGAATTTTTACCTGTTCCACTCGGAGCATGTCAATaGTCTGGTCAAATAAGGGTGTTCTCAGCAGATCTC +
Preference number: 6 (lower is better)
Translates to: REFLPVPLGACQ*SGQIRVFSADL
Trigger: GAGATCTGCTGAGAACACCCTTATTTGACCAGATCATTGACATGCTCCGAGTGGAACAGGTAAAAATTCACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025979.13
ENSMUST00000176939.8