RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ALCAM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022636

Ensembl transcript IDs: ENSMUST00000023312.14, ENSMUST00000164728.8, ENSMUST00000167115.8, ENSMUST00000168071.2, ENSMUST00000170035.8

Found 214 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCAACAAGTGCCACTGGAGAGAAGAAAGTCCAGAACTTGAAGACTaGGACTTAGCCTCCTTCCAGTGTGACGCGGTACATGGAGGTGCT +
Preference number: 1 (lower is better)
Translates to: ANKCHWREESPELED*DLASFQCDAVHGGA
Trigger: AGCACCTCCATGTACCGCGTCACACTGGAAGGAGGCTAAGTCTCAGTCTTCAAGTTCTGGACTTTCTTCTCTCCAGTGGCACTTGTTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 90 bp TTTTCCAGTTTAAGTTATACACATAAATCTGGGAAGAAATGGCGGTaGAGTGGGATCCCAGAAACGAAGCCTCCACCTGAAAGAGCAAAG +
Preference number: 1 (lower is better)
Translates to: FSSLSYTHKSGKKWR*SGIPETKPPPERAK
Trigger: CTTTGCTCTTTCAGGTGGAGGCTTCGTTTCTGGGATCCCACTGCACCGCCATTTCTTCCCAGATTTATGTGTATAACTTAAACTGGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 90 bp AAAGTGACAGGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTaGACATCTCCCATCAATGCTGGACGTATCTTCCTCGCTAGCAGC +
Preference number: 1 (lower is better)
Translates to: KVTGQTKQSIVLTFH*TSPINAGRIFLASS
Trigger: GCTGCTAGCGAGGAAGATACGTCCAGCATTGATGGGAGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCCTGTCACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR TCA 90 bp TCATATCCTATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTaGTTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTG +
Preference number: 1 (lower is better)
Translates to: SYPMVLLTLKIRNSF*LGKICVPISQLPPL
Trigger: CAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCATAGGATATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR TCA 90 bp CGTCCTCACTATGAAGTGAGACAAACCTCCGTGTGTTCAATTTGGTaGAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGAGTA +
Preference number: 1 (lower is better)
Translates to: RPHYEVRQTSVCSIW*SVCLILEMTSLAGV
Trigger: TACTCCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGTCTCACTTCATAGTGAGGACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
3UTR TCA 90 bp ACTGAGACACTATTGCTCAGATATCAAATGGTTACACATGTCCAATaGCACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAA +
Preference number: 1 (lower is better)
Translates to: TETLLLRYQMVTHVQ*HVSQSAEVAKHYSQ
Trigger: TTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAACCATTTGATATCTGAGCAATAGTGTCTCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 90 bp AGTTTACTCTTTATTTTGACAAATCAATGGAAGTTAGAGGGCATATaGCAGTTGTCACTGGTAGCGAGGGAAAGTGACAGGGCAAACAAA +
Preference number: 1 (lower is better)
Translates to: SLLFILTNQWKLEGI*QLSLVARESDRANK
Trigger: TTTGTTTGCCCTGTCACTTTCCCTCGCTACCAGTGACAACTGGCATATGCCCTCTAACTTCCATTGATTTGTCAAAATAAAGAGTAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR-3UTR CCA 90 bp TCCTCTCTTGTAAACATCTGCTCATGGGCAAGAGCTCTGAGCCAGTCATGCTGCCTCAGTCTGCAGAAGTaGCAAAACATTATTCCCAAC +
Preference number: 2 (lower is better)
Translates to: SSLVNICSWARALSQSCCLSLQK*QNIIPN
Trigger: GTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAG...GCAGCATGACTGGCTCAGAGCTCTTGCCCATGAGCAGATGTTTACAAGAGAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR-3UTR TCA 90 bp GGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGACGAAATACAACATATaGCCTATTATCATGGCTGCC +
Preference number: 2 (lower is better)
Translates to: GKICVPISQLPPLSFRSKTKYNI*PIIMAA
Trigger: GGCAGCCATGATAATAGGTCATATGTTGTATTTCGT...CTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR CAA 90 bp CTCTTTATTTTGACAAATCAATGGAAGTTAGAGGGCATATGCCAGTaGTCACTGGTAGCGAGGGAAAGTGACAGGGCAAACAAAACAGAG +
Preference number: 2 (lower is better)
Translates to: LFILTNQWKLEGICQ*SLVARESDRANKTE
Trigger: CTCTGTTTTGTTTGCCCTGTCACTTTCCCTCGCTACCAGTGACAACTGGCATATGCCCTCTAACTTCCATTGATTTGTCAAAATAAAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR-3UTR GCA 90 bp GGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAAATCAGAACCGTACCTaGTCAGACTATCCATATAAA +
Preference number: 2 (lower is better)
Translates to: GQDMCPNLTTATFELQVKNQNRT*SDYPYK
Trigger: TTTATATGGATAGTCTGAGCAGGTACGGTTCTGATT...TTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR TCA 90 bp AAAGAGCAAAGTTTAAAGTCTAGTCGCAAGTCGCTACTGGCCCTTATCCAGTCTGACAGCTTGGTAGAATaGACTGCTTTATACTTGAAC +
Preference number: 2 (lower is better)
Translates to: KEQSLKSSRKSLLALIQSDSLVE*TALYLN
Trigger: GTTCAAGTATAAAGCAGTTCATTCTACCAAGCTGTC...AGACTGGATAAGGGCCAGTAGCGACTTGCGACTAGACTTTAAACTTTGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR-3UTR GCA 90 bp CTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTAATCAGAACCGTACCTaGTCAGACTATCCATATAAA +
Preference number: 2 (lower is better)
Translates to: LLIGQDMCPNLTTATFELNQNRT*SDYPYK
Trigger: TTTATATGGATAGTCTGAGCAGGTACGGTTCTGATT...AAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR GCA 90 bp GGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCACATCTCCCATCAATCCTGTGAAGAGGCATTaGAGAGACTCAAGCATCCAT +
Preference number: 2 (lower is better)
Translates to: GQTKQSIVLTFHCTSPINPVKRH*RDSSIH
Trigger: ATGGATGCTTGAGTCTCTGCAATGCCTCTTCACAGG...ATTGATGGGAGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR-3UTR TCA 90 bp AAAGTGACAGGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCACATCTTCTAGAAAGTGCCTGTaGAGAGGCATTGCAGAGACT +
Preference number: 2 (lower is better)
Translates to: KVTGQTKQSIVLTFHCTSSRKCL*RGIAET
Trigger: AGTCTCTGCAATGCCTCTTCACAGGCACTTTCTAGA...AGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCCTGTCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR-3UTR TCA 90 bp CCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGGAACTGCTTTATACTTaGACCATGAATTGCTGTCAT +
Preference number: 2 (lower is better)
Translates to: PISQLPPLSFRSKYVQRKELLYT*TMNCCH
Trigger: ATGACAGCAATTCATGGTTCAAGTATAAAGCAGTTC...CTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR TCA 90 bp AAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGAACTGCTTTATACTTaGACCATGAATTGCTGTCAT +
Preference number: 2 (lower is better)
Translates to: KICVPISQLPPLSFRSKYELLYT*TMNCCH
Trigger: ATGACAGCAATTCATGGTTCAAGTATAAAGCAGTTC...ATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR TCA 90 bp GATAGCAATCAGAATCAGAACCGTACCTGCTCAGACTATCCATATAAACAATTGTTCTCTAAGATCCTGTaGCAGCTTGGTAGAATGAAC +
Preference number: 2 (lower is better)
Translates to: DSNQNQNRTCSDYPYKQLFSKIL*QLGRMN
Trigger: GTTCATTCTACCAAGCTGTCACAGGATCTTAGAGAA...CAATTGTTTATATGGATAGTCTGAGCAGGTACGGTTCTGATTCTGATTGCTATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR TCA 90 bp TTACACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTACGAAATACAACATATaGCCTATTATCATGGCTGCC +
Preference number: 2 (lower is better)
Translates to: LHMSNDTSLSLQKWQNIITKYNI*PIIMAA
Trigger: GGCAGCCATGATAATAGGTCATATGTTGTATTTCGT...AATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR-3UTR TCA 90 bp GATAGCAATCAGAATCAGAACCGTACCTGCTCAGACTATCCATATAAACAATTGGACAGCTTGGTAGAATaGACTGCTTTATACTTGAAC +
Preference number: 2 (lower is better)
Translates to: DSNQNQNRTCSDYPYKQLDSLVE*TALYLN
Trigger: GTTCAAGTATAAAGCAGTTCATTCTACCAAGCTGTC...CAATTGTTTATATGGATAGTCTGAGCAGGTACGGTTCTGATTCTGATTGCTATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR-3UTR GCA 90 bp TTATCTCAAGGTGCATTCAATATCTGTAGCGTAGTTAACAAAAACACACACGAAATTTACATCGTGATCTaGGACTATGGGGATATGAGC +
Preference number: 2 (lower is better)
Translates to: LSQGAFNICSVVNKNTHEIYIVI*DYGDMS
Trigger: GCTCATATCCCCATAGTCGCAGATCACGATGTAAAT...TTCGTGTGTGTTTTTGTTAACTACGCTACAGATATTGAATGCACCTTGAGATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR TCA 72 bp TGCCACTGGAGAGAAGAAAGTCCAGAACTTGAAGACTaGGACTTAGCCTCCTTCCAGTGTGACGCGGTACAT +
Preference number: 3 (lower is better)
Translates to: CHWREESPELED*DLASFQCDAVH
Trigger: ATGTACCGCGTCACACTGGAAGGAGGCTAAGTCTCAGTCTTCAAGTTCTGGACTTTCTTCTCTCCAGTGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 72 bp AACATCTGCTCATGGGCAAGAGCTCTGAGCCAGTCATaGTGCTGTCTAGGTTCTAACAGCTGTTTGTGGACT +
Preference number: 3 (lower is better)
Translates to: NICSWARALSQS*CCLGSNSCLWT
Trigger: AGTCCACAAACAGCTGTTAGAACCTAGACAGCAGCATGACTGGCTCAGAGCTCTTGCCCATGAGCAGATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CCA 72 bp CAAGCAATCTTTTCCTCTCTTGTAAACATCTGCTCATaGGCAAGAGCTCTGAGCCAGTCATGCTGCTGTCTA +
Preference number: 3 (lower is better)
Translates to: QAIFSSLVNICS*ARALSQSCCCL
Trigger: TAGACAGCAGCATGACTGGCTCAGAGCTCTTGCCCATGAGCAGATGTTTACAAGAGAGGAAAAGATTGCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 72 bp TTAAGTTATACACATAAATCTGGGAAGAAATGGCGGTaGAGTGGGATCCCAGAAACGAAGCCTCCACCTGAA +
Preference number: 3 (lower is better)
Translates to: LSYTHKSGKKWR*SGIPETKPPPE
Trigger: TTCAGGTGGAGGCTTCGTTTCTGGGATCCCACTGCACCGCCATTTCTTCCCAGATTTATGTGTATAACTTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 72 bp GAACCGGTTAGAAACCTGTATCTAGTTGCCAACAAGTaGCACTGGAGAGAAGAAAGTCCAGAACTTGAAGAC +
Preference number: 3 (lower is better)
Translates to: EPVRNLYLVANK*HWREESPELED
Trigger: GTCTTCAAGTTCTGGACTTTCTTCTCTCCAGTGGCACTTGTTGGCAACTAGATACAGGTTTCTAACCGGTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CCA 72 bp TCCAGTTTAAGTTATACACATAAATCTGGGAAGAAATaGCGGTGCAGTGGGATCCCAGAAACGAAGCCTCCA +
Preference number: 3 (lower is better)
Translates to: SSLSYTHKSGKK*RCSGIPETKPP
Trigger: TGGAGGCTTCGTTTCTGGGATCCCACTGCACCGCCATTTCTTCCCAGATTTATGTGTATAACTTAAACTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR GCA 72 bp AATGGTTACACATGTCCAATGACACGTCTCTCAGTCTaGAGAAGTGGCAAAACATTATTCCCAACCTCCAAC +
Preference number: 3 (lower is better)
Translates to: NGYTCPMTRLSV*RSGKTLFPTSN
Trigger: GTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAACCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CCA 72 bp CACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTaGCAAAACATTATTCCCAACCTCCAACAGAGATTA +
Preference number: 3 (lower is better)
Translates to: HMSNDTSLSLQK*QNIIPNLQQRL
Trigger: TAATCTCTGTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR TCA 72 bp ATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTaGTTGGGCAAGATATGTGTCCCAATCTCACAACTG +
Preference number: 3 (lower is better)
Translates to: MVLLTLKIRNSF*LGKICVPISQL
Trigger: CAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR GCA 72 bp GGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTaGACATCTCCCATCAATGCTGGACGTATCTTCCTC +
Preference number: 3 (lower is better)
Translates to: GQTKQSIVLTFH*TSPINAGRIFL
Trigger: GAGGAAGATACGTCCAGCATTGATGGGAGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR GCA 72 bp TTTATTTTGACAAATCAATGGAAGTTAGAGGGCATATaGCAGTTGTCACTGGTAGCGAGGGAAAGTGACAGG +
Preference number: 3 (lower is better)
Translates to: FILTNQWKLEGI*QLSLVARESDR
Trigger: CCTGTCACTTTCCCTCGCTACCAGTGACAACTGGCATATGCCCTCTAACTTCCATTGATTTGTCAAAATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR-3UTR CAA 90 bp GAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTAAGTATGGGGTGTTATaGATAGCAATCAGAATCAGA +
Preference number: 3 (lower is better)
Translates to: ETASDWARYVSQSHNCHLKYGVL*IAIRIR
Trigger: TCTGATTCTGATTGCTATCAATAACACCCCATACTT...AAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR TCA 72 bp CTATTGCTCAGATATCAAATGGTTACACATGTCCAATaGCACGTCTCTCAGTCTGCAGAAGTGGCAAAACAT +
Preference number: 3 (lower is better)
Translates to: LLLRYQMVTHVQ*HVSQSAEVAKH
Trigger: ATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAACCATTTGATATCTGAGCAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR-3UTR CAA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGTATGGGGTGTTATaGATAGCAATCAGAATCAGA +
Preference number: 3 (lower is better)
Translates to: MCPNLTTATFELQVKVCSKYGVL*IAIRIR
Trigger: TCTGATTCTGATTGCTATCAATAACACCCCATACTT...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR TCA 72 bp TATGAAGTGAGACAAACCTCCGTGTGTTCAATTTGGTaGAGTGTTTGTCTTATTCTGGAAATGACATCCCTA +
Preference number: 3 (lower is better)
Translates to: YEVRQTSVCSIW*SVCLILEMTSL
Trigger: TAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGTCTCACTTCATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
3UTR GCA 72 bp ACACCAATTTTAATTACAGTGATTTACATCGTGATCTaGGACTATGGGGATATGAGCTTCCAACTTTCTCTG +
Preference number: 3 (lower is better)
Translates to: TPILITVIYIVI*DYGDMSFQLSL
Trigger: CAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTAAATCACTGTAATTAAAATTGGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR TCA 72 bp GATAATTCTCTAAGATCCTGTGACAGCTTGGTAGAATaGACTGCTTTATACTTGAACCATGAATTGCTGTCA +
Preference number: 3 (lower is better)
Translates to: DNSLRSCDSLVE*TALYLNHELLS
Trigger: TGACAGCAATTCATGGTTCAAGTATAAAGCAGTTCATTCTACCAAGCTGTCACAGGATCTTAGAGAATTATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
ENSMUST00000170035.8
3UTR CCA 72 bp TTTAATTACAGTGATTTACATCGTGATCTGCGACTATaGGGATATGAGCTTCCAACTTTCTCTGACACTTTT +
Preference number: 3 (lower is better)
Translates to: FNYSDLHRDLRL*GYELPTFSDTF
Trigger: AAAAGTGTCAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTAAATCACTGTAATTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CCA 72 bp TTTATTAAACTGAGACACTATTGCTCAGATATCAAATaGTTACACATGTCCAATGACACGTCTCTCAGTCTG +
Preference number: 3 (lower is better)
Translates to: FIKLRHYCSDIK*LHMSNDTSLSL
Trigger: CAGACTGAGAGACGTGTCATTGGACATGTGTAACCATTTGATATCTGAGCAATAGTGTCTCAGTTTAATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp ATCCATCTGGAGAACACCTCCTACCACCAGCCATCAACCCCACTTCCCGGCTCTCCAAACATGAGGTTCTaGGGTACATCGAGACGGCAA +
Preference number: 4 (lower is better)
Translates to: IHLENTSYHQPSTPLPGSPNMRF*GTSRRQ
Trigger: TTGCCGTCTCGATGTACCTCAGAACCTCATGTTTGG...AGAGCCGGGAAGTGGGGTTGATGGCTGGTGGTAGGAGGTGTTCTCCAGATGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR CCA 90 bp TGCTCATGGGCAAGAGCTCTGAGCCAGTCATGCTGCTGTCTAGGTTCTAACAGCGAACTCCTCAGGAGGTaGGTTGCCATTCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: CSWARALSQSCCCLGSNSELLRR*VAIPQT
Trigger: TGTTTGGGGAATGGCAACCCACCTCCTGAGGAGTTC...GCTGTTAGAACCTAGACAGCAGCATGACTGGCTCAGAGCTCTTGCCCATGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp TACATCGTGATCTGCGACTATGGGGATATGAGCTTCCAACTTTCTCTGACACTTATCCAAGGCCTGGTCTaGGGACCGCGGCGGAGATCA +
Preference number: 4 (lower is better)
Translates to: YIVICDYGDMSFQLSLTLIQGLV*GPRRRS
Trigger: TGATCTCCGCCGCGGTCCTCAGACCAGGCCTTGGAT...AAGTGTCAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp ATCTGGAGAACACCTCCTACCACCAGCCATCAACCCCACTTCCCGGCTCTACTGGAATGCAATAAATACTaGGGACCCATCGGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: IWRTPPTTSHQPHFPALLECNKY*GPIGLF
Trigger: GAAAAGCCCGATGGGTCCCCAGTATTTATTGCATTC...CAGTAGAGCCGGGAAGTGGGGTTGATGGCTGGTGGTAGGAGGTGTTCTCCAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR TCA 90 bp TCCTCTCTTGTAAACATCTGCTCATGGGCAAGAGCTCTGAGCCAGTCATGCTGCCCAAACATGAGGTTCTaGGGTACATCGAGACGGCAA +
Preference number: 4 (lower is better)
Translates to: SSLVNICSWARALSQSCCPNMRF*GTSRRQ
Trigger: TTGCCGTCTCGATGTACCTCAGAACCTCATGTTTGG...GCAGCATGACTGGCTCAGAGCTCTTGCCCATGAGCAGATGTTTACAAGAGAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp CGGTGCAGTGGGATCCCAGAAACGAAGCCTCCACCTGAAAGAGCAAAGTTTAAATGGAAAAGGAAGGGCTaGACCGGAGCCGGATGTTAT +
Preference number: 4 (lower is better)
Translates to: RCSGIPETKPPPERAKFKWKRKG*TGAGCY
Trigger: ATAACATCCGGCTCCGGTCCAGCCCTTCCTTTTCCA...TTTAAACTTTGCTCTTTCAGGTGGAGGCTTCGTTTCTGGGATCCCACTGCACCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp GGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAATGCAGATATTGTGCATaGCACAGGCAGGGTATCGCC +
Preference number: 4 (lower is better)
Translates to: GQDMCPNLTTATFELQVKCRYCA*HRQGIA
Trigger: GGCGATACCCTGCCTGTGTCATGCACAATATCTGCA...TTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp GTAGGACTAGGAGTAAACGCTCTCCCGATGCCTTGTTCCTTCTTTCTGCAAACAAGTCCCCTGTGGCATTaGGTCTCACATCTGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VGLGVNALPMPCSFFLQTSPLWH*VSHLSV
Trigger: CACTGACAGATGTGAGACGCAATGCCACAGGGGACT...TGTTTGCAGAAAGAAGGAACAAGGCATCGGGAGAGCGTTTACTCCTAGTCCTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCAAGGCCTGGTCTaGGGACCGCGGCGGAGATCA +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDIQGLV*GPRRRS
Trigger: TGATCTCCGCCGCGGTCCTCAGACCAGGCCTTGGAT...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCACATCTCCCATCAATGCATCCAAGGCCTGGTCTaGGGACCGCGGCGGAGATCA +
Preference number: 4 (lower is better)
Translates to: ANKTEYCSNFSLHISHQCIQGLV*GPRRRS
Trigger: TGATCTCCGCCGCGGTCCTCAGACCAGGCCTTGGAT...GCATTGATGGGAGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR TCA 90 bp GGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGCTCCATATGCTGAGTTaGCAGTGTACCATCCAAGGC +
Preference number: 4 (lower is better)
Translates to: GKICVPISQLPPLSFRSKLHMLS*QCTIQG
Trigger: GCCTTGGATGGTACACTGTCAACTCAGCATATGGAG...CTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp GTAGGACTAGGAGTAAACGCTCTCCCGATGCCTTGTTCCTTCTTTCTGCAAACATCTCCTTCCACAGGTTaGAGCACTTTGCCATTCCTG +
Preference number: 4 (lower is better)
Translates to: VGLGVNALPMPCSFFLQTSPSTG*STLPFL
Trigger: CAGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGA...TGTTTGCAGAAAGAAGGAACAAGGCATCGGGAGAGCGTTTACTCCTAGTCCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CAA 72 bp AGCCAGTCATGCTGCTGTCTAGGTTCTAACAGCTGTTaGTGGACTCAGTTACCATTGCAAGTGGACGCCTTA +
Preference number: 4 (lower is better)
Translates to: SQSCCCLGSNSC*WTQLPLQVDAL
Trigger: TAAGGCGTCCACTTGCAATGGTAACTGAGTCCACAAACAGCTGTTAGAACCTAGACAGCAGCATGACTGGCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp TTGACAAATCAATGGAAGTTAGAGGGCATATGCCAGTTGTCACTGGTAGCGAGGGGTGTCTCCATATGCTaGGTTGACAGTGTACCATCC +
Preference number: 4 (lower is better)
Translates to: LTNQWKLEGICQLSLVARGVSIC*VDSVPS
Trigger: GGATGGTACACTGTCAACTCAGCATATGGAGACACC...CCTCGCTACCAGTGACAACTGGCATATGCCCTCTAACTTCCATTGATTTGTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR TCA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCACCATTCCCCAAACACTaGAGGGTGATGTTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: MCPNLTTATFELQVKVCSPFPKH*RVMLSP
Trigger: AGGGGACAACATCACCCTTCAGTGTTTGGGGAATGG...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp GTAGGACTAGGAGTAAACGCTCTCCCGATGCCTTGTTCCTTCTTTCTGCAAACACTGGTAAGTAAAACATaGACTCCTCAGGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: VGLGVNALPMPCSFFLQTLVSKT*TPQEVG
Trigger: ACCCACCTCCTGAGGAGTTCATGTTTTACTTACCAG...TGTTTGCAGAAAGAAGGAACAAGGCATCGGGAGAGCGTTTACTCCTAGTCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCACCTCAGGAGGTGGGTTaGCATTCCCCAAACACTGAA +
Preference number: 4 (lower is better)
Translates to: MCPNLTTATFELQVKVCSPQEVG*HSPNTE
Trigger: TTCAGTGTTTGGGGAATGGCAACCCACCTCCTGAGG...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp TACATCGTGATCTGCGACTATGGGGATATGAGCTTCCAACTTTCTCTGACACTTGGTGTCTCCATATGCTaGGTTGACAGTGTACCATCC +
Preference number: 4 (lower is better)
Translates to: YIVICDYGDMSFQLSLTLGVSIC*VDSVPS
Trigger: GGATGGTACACTGTCAACTCAGCATATGGAGACACC...AAGTGTCAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp AAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATTGGAAAAGGAAGGGCTaGACCGGAGCCGGATGTTAT +
Preference number: 4 (lower is better)
Translates to: KICVPISQLPPLSFRSKYWKRKG*TGAGCY
Trigger: ATAACATCCGGCTCCGGTCCAGCCCTTCCTTTTCCA...ATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp GAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTGGTCCAATGTATAGCTaGCTTTGGAAACCCTTCCAC +
Preference number: 4 (lower is better)
Translates to: ETASDWARYVSQSHNCHLGPMYS*LWKPFH
Trigger: GTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACC...AAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
3UTR CAA 72 bp AGATTAAGAGCTCTAGAAAGTGCCTGTGAAGAGGCATaGCAGAGACTCAAGCATCCATCTGGAGAACACCTC +
Preference number: 4 (lower is better)
Translates to: RLRALESACEEA*QRLKHPSGEHL
Trigger: GAGGTGTTCTCCAGATGGATGCTTGAGTCTCTGCAATGCCTCTTCACAGGCACTTTCTAGAGCTCTTAATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
3UTR CAA 72 bp TTGACAAATCAATGGAAGTTAGAGGGCATATGCCAGTaGTCACTGGTAGCGAGGGAAAGTGACAGGGCAAAC +
Preference number: 4 (lower is better)
Translates to: LTNQWKLEGICQ*SLVARESDRAN
Trigger: GTTTGCCCTGTCACTTTCCCTCGCTACCAGTGACAACTGGCATATGCCCTCTAACTTCCATTGATTTGTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR TCA 90 bp GAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTCCATTTGCCAAACATaGGGTTCTGAGGTACATCGA +
Preference number: 4 (lower is better)
Translates to: ETASDWARYVSQSHNCHLSICQT*GSEVHR
Trigger: TCGATGTACCTCAGAACCTCATGTTTGGCAAATGGA...AAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCCCATTCCCCAAACACTaGAGGGTGATGTTGTCCCCT +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSPFPKH*RVMLSP
Trigger: AGGGGACAACATCACCCTTCAGTGTTTGGGGAATGG...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTGTTCCTTTTGTCAATaGGTGAGCATTTGTAGTCCC +
Preference number: 4 (lower is better)
Translates to: GKICVPISQLPPLSFRSKCSFCQ*VSICSP
Trigger: GGGACTACAAATGCTCACTCATTGACAAAAGGAACA...CTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp AAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATTCTCCTTCCACAGGTTaGAGCACTTTGCCATTCCTG +
Preference number: 4 (lower is better)
Translates to: KICVPISQLPPLSFRSKYSPSTG*STLPFL
Trigger: CAGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGA...ATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp GAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGTTTGAGCTTCTTATaGCTTCAGGCTGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: ETASDWARYVSQSHNCHLCLSFL*LQAVLV
Trigger: TACCAGGACAGCCTGAAGGCATAAGAAGCTCAAACA...AAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGAGTCCCCTGTGGCATTaGGTCTCACATCTGTCAGTG +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRSPLWH*VSHLSV
Trigger: CACTGACAGATGTGAGACGCAATGCCACAGGGGACT...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCGAACTCCTCAGGAGGTaGGTTGCCATTCCCCAAACA +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSELLRR*VAIPQT
Trigger: TGTTTGGGGAATGGCAACCCACCTCCTGAGGAGTTC...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp AAAGAGCAAAGTTTAAAGTCTAGTCGCAAGTCGCTACTGGCCCTTATCCAGTCTATTTGTAGTCCCCTGTaGCATTGCGTCTCACATCTG +
Preference number: 4 (lower is better)
Translates to: KEQSLKSSRKSLLALIQSICSPL*HCVSHL
Trigger: CAGATGTGAGACGCAATGCCACAGGGGACTACAAAT...AGACTGGATAAGGGCCAGTAGCGACTTGCGACTAGACTTTAAACTTTGCTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
3UTR CAA 72 bp AAATTGTCAGTTTGGGAGTACCATTCTCAAGTAGTGTaGCTGTATGTGTTTGTGACTCGCTTCGGGGAGCCT +
Preference number: 4 (lower is better)
Translates to: KLSVWEYHSQVV*LYVFVTRFGEP
Trigger: AGGCTCCCCGAAGCGAGTCACAAACACATACAGCAACACTACTTGAGAATGGTACTCCCAAACTGACAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCGGTGTCTCCATATGCTaGGTTGACAGTGTACCATCC +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSGVSIC*VDSVPS
Trigger: GGATGGTACACTGTCAACTCAGCATATGGAGACACC...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGCCAAACATGAGGTTCTaGGGTACATCGAGACGGCAA +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRPNMRF*GTSRRQ
Trigger: TTGCCGTCTCGATGTACCTCAGAACCTCATGTTTGG...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGCCTAACTTTTTCAGCTaGTCTGTTTCAAGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: GKICVPISQLPPLSFRSKPNFFS*SVSRKG
Trigger: ACCCTTTCTTGAAACAGATCAGCTGAAAAAGTTAGG...CTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp CTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTATGTCACAGAACAGGTaGATGGCATTTGTATGTCAG +
Preference number: 4 (lower is better)
Translates to: LLIGQDMCPNLTTATFELMSQNR*MAFVCQ
Trigger: CTGACATACAAATGCCATTCACCTGTTCTGTGACAT...AAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR TCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACCCAAGTAGTGAACTGTaGTGGTCGTTGAAGCCGCCA +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDPSSEL*WSLKPP
Trigger: TGGCGGCTTCAACGACCATCACAGTTCACTACTTGG...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCTGCAGATATTGTGCATaGCACAGGCAGGGTATCGCC +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDICRYCA*HRQGIA
Trigger: GGCGATACCCTGCCTGTGTCATGCACAATATCTGCA...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTCAGGAGGTGGGTTaGCATTCCCCAAACACTGAA +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIPQEVG*HSPNTE
Trigger: TTCAGTGTTTGGGGAATGGCAACCCACCTCCTGAGG...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAGAATGCAATAAATACTaGGGACCCATCGGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: MCPNLTTATFELQVKVCSECNKY*GPIGLF
Trigger: GAAAAGCCCGATGGGTCCCCAGTATTTATTGCATTC...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACTGGAAAAGGAAGGGCTaGACCGGAGCCGGATGTTAT +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDWKRKG*TGAGCY
Trigger: ATAACATCCGGCTCCGGTCCAGCCCTTCCTTTTCCA...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp TCCTATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATGGTCCAATGTATAGCTaGCTTTGGAAACCCTTCCAC +
Preference number: 4 (lower is better)
Translates to: SYGAPNSQDKKQLLIGQDGPMYS*LWKPFH
Trigger: GTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACC...ATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCATAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp ATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAACCTCCAACACTGTTCTCTCCAGTTaGTTTTCTGCTGTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: MTRLSVCRSGKTLFPTSNTVLSS*FSAVQV
Trigger: AACTTGCACAGCAGAAAACCAACTGGAGAGAACAGT...GTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp GAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTACTGTTCTCTCCAGTTaGTTTTCTGCTGTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: ETASDWARYVSQSHNCHLTVLSS*FSAVQV
Trigger: AACTTGCACAGCAGAAAACCAACTGGAGAGAACAGT...AAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp TCCTATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATTGCCTCATCGTGCTCTaGAATACTTATCGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: SYGAPNSQDKKQLLIGQDCLIVL*NTYRRD
Trigger: GTCTCTGCGATAAGTATTCCAGAGCACGATGAGGCA...ATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCATAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp AAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATTGCCTCATCGTGCTCTaGAATACTTATCGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: KICVPISQLPPLSFRSKYCLIVL*NTYRRD
Trigger: GTCTCTGCGATAAGTATTCCAGAGCACGATGAGGCA...ATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR TCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACCTCCATATGCTGAGTTaGCAGTGTACCATCCAAGGC +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDLHMLS*QCTIQG
Trigger: GCCTTGGATGGTACACTGTCAACTCAGCATATGGAG...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp CCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCATTCCTGTACCATGTaGTGTTGCCATCTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: PNSQDKKQLLIGQDMCPNHSCTM*CCHLGN
Trigger: GTTACCCAGATGGCAACATCACATGGTACAGGAATG...ATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR TCA 90 bp TACATCGTGATCTGCGACTATGGGGATATGAGCTTCCAACTTTCTCTGACACTTATGTCACAGAACAGGTaGATGGCATTTGTATGTCAG +
Preference number: 4 (lower is better)
Translates to: YIVICDYGDMSFQLSLTLMSQNR*MAFVCQ
Trigger: CTGACATACAAATGCCATTCACCTGTTCTGTGACAT...AAGTGTCAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGCTGGTAAGTAAAACATaGACTCCTCAGGAGGTGGGT +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRLVSKT*TPQEVG
Trigger: ACCCACCTCCTGAGGAGTTCATGTTTTACTTACCAG...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp CTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTGGGACATCATCATACTaGACACTTTTCTTCGTAGAA +
Preference number: 4 (lower is better)
Translates to: LLIGQDMCPNLTTATFELGTSSY*TLFFVE
Trigger: TTCTACGAAGAAAAGTGTGCAGTATGATGATGTCCC...AAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp TCCTATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATCCTCGGTCACTAGCATaGACACAAATCTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: SYGAPNSQDKKQLLIGQDPRSLA*TQISSH
Trigger: ATGAGAAGAGATTTGTGTGCATGCTAGTGACCGAGG...ATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCATAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCTCTCCTTCCACAGGTTaGAGCACTTTGCCATTCCTG +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDISPSTG*STLPFL
Trigger: CAGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGA...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCATACTTGCAGATATTGTaGATGACACAGGCAGGGTAT +
Preference number: 4 (lower is better)
Translates to: MCPNLTTATFELQVKVCSYLQIL*MTQAGY
Trigger: ATACCCTGCCTGTGTCATGCACAATATCTGCAAGTA...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp TTACACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTTCGTCTGCCTCATCGTaGTCTGGAATACTTATCGCA +
Preference number: 4 (lower is better)
Translates to: LHMSNDTSLSLQKWQNIISSASS*SGILIA
Trigger: TGCGATAAGTATTCCAGAGCACGATGAGGCAGACGA...AATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCATTTGTAGTCCCCTGTaGCATTGCGTCTCACATCTG +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSICSPL*HCVSHL
Trigger: CAGATGTGAGACGCAATGCCACAGGGGACTACAAAT...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCTGCCTCATCGTGCTCTaGAATACTTATCGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSCLIVL*NTYRRD
Trigger: GTCTCTGCGATAAGTATTCCAGAGCACGATGAGGCA...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
3UTR CAA 72 bp GAGACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTaGTCTTATTCTGGAAATGACATCCCTAGCAGGAGT +
Preference number: 4 (lower is better)
Translates to: ETNLRVFNLVKC*SYSGNDIPSRS
Trigger: ACTCCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCATTCCTGTACCATGTaGTGTTGCCATCTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIHSCTM*CCHLGN
Trigger: GTTACCCAGATGGCAACATCACATGGTACAGGAATG...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp TGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGAACCGTACCCATTCCTGTACCATGTaGTGTTGCCATCTGGGTAAC +
Preference number: 4 (lower is better)
Translates to: CSKKVWGVIDSNQNQNRTHSCTM*CCHLGN
Trigger: GTTACCCAGATGGCAACATCACATGGTACAGGAATG...GGTACGGTTCTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR TCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCCAGTGTGTAAGTGTTTaGGCTTCTTATGCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSQCVSV*ASYAFR
Trigger: CCTGAAGGCATAAGAAGCTCAAACACTTACACACTG...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp TTATCTCAAGGTGCATTCAATATCTGTAGCGTAGTTAACAAAAACACACACGAACCAAGTAGTGAACTGTaGTGGTCGTTGAAGCCGCCA +
Preference number: 4 (lower is better)
Translates to: LSQGAFNICSVVNKNTHEPSSEL*WSLKPP
Trigger: TGGCGGCTTCAACGACCATCACAGTTCACTACTTGG...TTCGTGTGTGTTTTTGTTAACTACGCTACAGATATTGAATGCACCTTGAGATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR TCA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGTGCAGATATTGTGCATaGCACAGGCAGGGTATCGCC +
Preference number: 4 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQCRYCA*HRQGIA
Trigger: GGCGATACCCTGCCTGTGTCATGCACAATATCTGCA...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGTGTTTGAGCTTCTTATaGCTTCAGGCTGTCCTGGTA +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRCLSFL*LQAVLV
Trigger: TACCAGGACAGCCTGAAGGCATAAGAAGCTCAAACA...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACTCGTCTGCCTCATCGTaGTCTGGAATACTTATCGCA +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDSSASS*SGILIA
Trigger: TGCGATAAGTATTCCAGAGCACGATGAGGCAGACGA...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp ATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAACCTCCAACAATTTCAGGTTTAGATaGTTGCTTGAACACCTTGAC +
Preference number: 4 (lower is better)
Translates to: MTRLSVCRSGKTLFPTSNNFRFR*LLEHLD
Trigger: GTCAAGGTGTTCAAGCAACCATCTAAACCTGAAATT...GTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp AAAGAGCAAAGTTTAAAGTCTAGTCGCAAGTCGCTACTGGCCCTTATCCAGTCTCACAGAACAGGTGAATaGCATTTGTATGTCAGATCT +
Preference number: 4 (lower is better)
Translates to: KEQSLKSSRKSLLALIQSHRTGE*HLYVRS
Trigger: AGATCTGACATACAAATGCCATTCACCTGTTCTGTG...AGACTGGATAAGGGCCAGTAGCGACTTGCGACTAGACTTTAAACTTTGCTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCGGTCCAATGTATAGCTaGCTTTGGAAACCCTTCCAC +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIGPMYS*LWKPFH
Trigger: GTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACC...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAGTTTTGATGCAGTTTTaGACTTCTTCATGTACAGCC +
Preference number: 4 (lower is better)
Translates to: MCPNLTTATFELQVKVCSVLMQF*TSSCTA
Trigger: GGCTGTACATGAAGAAGTCCAAAACTGCATCAAAAC...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR TCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCTCCATTTGCCAAACATaGGGTTCTGAGGTACATCGA +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDISICQT*GSEVHR
Trigger: TCGATGTACCTCAGAACCTCATGTTTGGCAAATGGA...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCACATCTCCCATCAATGCTCCATTTGCCAAACATaGGGTTCTGAGGTACATCGA +
Preference number: 4 (lower is better)
Translates to: ANKTEYCSNFSLHISHQCSICQT*GSEVHR
Trigger: TCGATGTACCTCAGAACCTCATGTTTGGCAAATGGA...GCATTGATGGGAGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR TCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCATGTCACAGAACAGGTaGATGGCATTTGTATGTCAG +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSMSQNR*MAFVCQ
Trigger: CTGACATACAAATGCCATTCACCTGTTCTGTGACAT...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGTGTTCCTTTTGTCAATaGGTGAGCATTTGTAGTCCC +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRCSFCQ*VSICSP
Trigger: GGGACTACAAATGCTCACTCATTGACAAAAGGAACA...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp CGAGGGAAAGTGACAGGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCGGGACATCATCATACTaGACACTTTTCTTCGTAGAA +
Preference number: 4 (lower is better)
Translates to: RGKVTGQTKQSIVLTFHCGTSSY*TLFFVE
Trigger: TTCTACGAAGAAAAGTGTGCAGTATGATGATGTCCC...GCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCCTGTCACTTTCCCTCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR GCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACCCTCGGTCACTAGCATaGACACAAATCTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDPRSLA*TQISSH
Trigger: ATGAGAAGAGATTTGTGTGCATGCTAGTGACCGAGG...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCTACTTGCAGATATTGTaGATGACACAGGCAGGGTAT +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSYLQIL*MTQAGY
Trigger: ATACCCTGCCTGTGTCATGCACAATATCTGCAAGTA...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACGAATGCAATAAATACTaGGGACCCATCGGGCTTTTC +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDECNKY*GPIGLF
Trigger: GAAAAGCCCGATGGGTCCCCAGTATTTATTGCATTC...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp CCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGCACAGAACAGGTGAATaGCATTTGTATGTCAGATCT +
Preference number: 4 (lower is better)
Translates to: PISQLPPLSFRSKYVQRKHRTGE*HLYVRS
Trigger: AGATCTGACATACAAATGCCATTCACCTGTTCTGTG...CTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCACTGTTCTCTCCAGTTaGTTTTCTGCTGTGCAAGTT +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSTVLSS*FSAVQV
Trigger: AACTTGCACAGCAGAAAACCAACTGGAGAGAACAGT...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGCCTAACTTTTTCAGCTaGTCTGTTTCAAGAAAGGGT +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRPNFFS*SVSRKG
Trigger: ACCCTTTCTTGAAACAGATCAGCTGAAAAAGTTAGG...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGTCGTCTGCCTCATCGTaGTCTGGAATACTTATCGCA +
Preference number: 4 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQSSASS*SGILIA
Trigger: TGCGATAAGTATTCCAGAGCACGATGAGGCAGACGA...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCTTTGTATGTCAGATCTaGTTGTCTTGTACTCCAAGG +
Preference number: 4 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSFVCQI*LSCTPR
Trigger: CCTTGGAGTACAAGACAACCAGATCTGACATACAAA...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGCACAGAACAGGTGAATaGCATTTGTATGTCAGATCT +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRHRTGE*HLYVRS
Trigger: AGATCTGACATACAAATGCCATTCACCTGTTCTGTG...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR TCA 90 bp TTATCTCAAGGTGCATTCAATATCTGTAGCGTAGTTAACAAAAACACACACGAACAGTGTGTAAGTGTTTaGGCTTCTTATGCCTTCAGG +
Preference number: 4 (lower is better)
Translates to: LSQGAFNICSVVNKNTHEQCVSV*ASYAFR
Trigger: CCTGAAGGCATAAGAAGCTCAAACACTTACACACTG...TTCGTGTGTGTTTTTGTTAACTACGCTACAGATATTGAATGCACCTTGAGATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCGGGACATCATCATACTaGACACTTTTCTTCGTAGAA +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIGTSSY*TLFFVE
Trigger: TTCTACGAAGAAAAGTGTGCAGTATGATGATGTCCC...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp CCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGGTTGGTTTTCTGCTGTaGAAGTTAATGTTACATTCT +
Preference number: 4 (lower is better)
Translates to: PISQLPPLSFRSKYVQRKVGFLL*KLMLHS
Trigger: AGAATGTAACATTAACTTGCACAGCAGAAAACCAAC...CTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp TCCTATGGTGCTCCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATGTTGGTTTTCTGCTGTaGAAGTTAATGTTACATTCT +
Preference number: 4 (lower is better)
Translates to: SYGAPNSQDKKQLLIGQDVGFLL*KLMLHS
Trigger: AGAATGTAACATTAACTTGCACAGCAGAAAACCAAC...ATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGGAGCACCATAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp TTACACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTAACTGTCTCTTGAAATaGAGTCACCTAACTTTTTCA +
Preference number: 4 (lower is better)
Translates to: LHMSNDTSLSLQKWQNIINCLLK*SHLTFS
Trigger: TGAAAAAGTTAGGTGACTGCATTTCAAGAGACAGTT...AATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR GCA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGAACTGTCTCTTGAAATaGAGTCACCTAACTTTTTCA +
Preference number: 4 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRNCLLK*SHLTFS
Trigger: TGAAAAAGTTAGGTGACTGCATTTCAAGAGACAGTT...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCAATTTCAGGTTTAGATaGTTGCTTGAACACCTTGAC +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDINFRFR*LLEHLD
Trigger: GTCAAGGTGTTCAAGCAACCATCTAAACCTGAAATT...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACTGTTTCAAGAAAGGGTaGTTTGTTTACAATTTCAGG +
Preference number: 4 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDCFKKG*FVYNFR
Trigger: CCTGAAATTGTAAACAAAGCACCCTTTCTTGAAACA...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR GCA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCGTTGGTTTTCTGCTGTaGAAGTTAATGTTACATTCT +
Preference number: 4 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIVGFLL*KLMLHS
Trigger: AGAATGTAACATTAACTTGCACAGCAGAAAACCAAC...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CCA 90 bp ACAGATAAACTGAATGTCGTAACCAGGCAAAACAAAGAACTTTGGTTTGGTTTTTTTGTATGTCAGATCTaGTTGTCTTGTACTCCAAGG +
Preference number: 4 (lower is better)
Translates to: TDKLNVVTRQNKELWFGFFVCQI*LSCTPR
Trigger: CCTTGGAGTACAAGACAACCAGATCTGACATACAAA...AAAACCAAACCAAAGTTCTTTGTTTTGCCTGGTTACGACATTCAGTTTATCTGT
37% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CCA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGTTTGTATGTCAGATCTaGTTGTCTTGTACTCCAAGG +
Preference number: 4 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQFVCQI*LSCTPR
Trigger: CCTTGGAGTACAAGACAACCAGATCTGACATACAAA...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CCA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGGTTTTGATGCAGTTTTaGACTTCTTCATGTACAGCC +
Preference number: 4 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQVLMQF*TSSCTA
Trigger: GGCTGTACATGAAGAAGTCCAAAACTGCATCAAAAC...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR GCA 90 bp ACAGATAAACTGAATGTCGTAACCAGGCAAAACAAAGAACTTTGGTTTGGTTTTTGTTTCAAGAAAGGGTaGTTTGTTTACAATTTCAGG +
Preference number: 4 (lower is better)
Translates to: TDKLNVVTRQNKELWFGFCFKKG*FVYNFR
Trigger: CCTGAAATTGTAAACAAAGCACCCTTTCTTGAAACA...AAAACCAAACCAAAGTTCTTTGTTTTGCCTGGTTACGACATTCAGTTTATCTGT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS TCA 90 bp AGGTACATCGAGACGGCAAGGCATGACAATGGTGTCTCCATATGCTaGGTTGACAGTGTACCATCCAAGGCCTGGTCTGAGGACCGCGGC +
Preference number: 5 (lower is better)
Translates to: RYIETARHDNGVSIC*VDSVPSKAWSEDRG
Trigger: GCCGCGGTCCTCAGACCAGGCCTTGGATGGTACACTGTCAACTCAGCATATGGAGACACCATTGTCATGCCTTGCCGTCTCGATGTACCT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS TCA 90 bp CTTCATCCACACCACAGTCGCGTTCCTACTTGCAGATATTGTGCATaGCACAGGCAGGGTATCGCCAATCTGCTTGGTCACCTCCCCACT +
Preference number: 5 (lower is better)
Translates to: LHPHHSRVPTCRYCA*HRQGIANLLGHLPT
Trigger: AGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS GCA 90 bp TATCCTTCATCCACACCACAGTCGCGTTCCTACTTGCAGATATTGTaGATGACACAGGCAGGGTATCGCCAATCTGCTTGGTCACCTCCC +
Preference number: 5 (lower is better)
Translates to: YPSSTPQSRSYLQIL*MTQAGYRQSAWSPP
Trigger: GGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGAAGGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CCA 90 bp CATAGTTCCCAGCATCCTGATAATGAAGACTGGAAAAGGAAGGGCTaGACCGGAGCCGGATGTTATCCTTCATCCACACCACAGTCGCGT +
Preference number: 5 (lower is better)
Translates to: HSSQHPDNEDWKRKG*TGAGCYPSSTPQSR
Trigger: ACGCGACTGTGGTGTGGATGAAGGATAACATCCGGCTCCGGTCCAGCCCTTCCTTTTCCAGTCTTCATTATCAGGATGCTGGGAACTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS-3UTR CAA 90 bp CGGTGCAGTGGGATCCCAGAAACGAAGCCTCCACCTGAAAGAGCAAAGTTTAAATCCTACTTGCAGATATaGTGCATGACACAGGCAGGG +
Preference number: 5 (lower is better)
Translates to: RCSGIPETKPPPERAKFKSYLQI*CMTQAG
Trigger: CCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGA...TTTAAACTTTGCTCTTTCAGGTGGAGGCTTCGTTTCTGGGATCCCACTGCACCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp CGGTGCAGTGGGATCCCAGAAACGAAGCCTCCACCTGAAAGAGCAAAGTTTAAATCTCCATATGCTGAGTaGACAGTGTACCATCCAAGG +
Preference number: 5 (lower is better)
Translates to: RCSGIPETKPPPERAKFKSPYAE*TVYHPR
Trigger: CCTTGGATGGTACACTGTCAACTCAGCATATGGAGA...TTTAAACTTTGCTCTTTCAGGTGGAGGCTTCGTTTCTGGGATCCCACTGCACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp CTTCTGATTGGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCTCTCCTTCCACAGGTaGCAGCACTTTGCCATTCCT +
Preference number: 5 (lower is better)
Translates to: LLIGQDMCPNLTTATFELLSFHR*QHFAIP
Trigger: AGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGAG...AAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCCAATCAGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS CCA 90 bp TATGACGCTCCCACTGCCGGTAATGGTCCAATGTATAGCTGGCTTTaGAAACCCTTCCACGTGGCAGATTATAGTTTTAGACAGTCCACT +
Preference number: 5 (lower is better)
Translates to: YDAPTAGNGPMYSWL*KPFHVADYSFRQST
Trigger: AGTGGACTGTCTAAAACTATAATCTGCCACGTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACCATTACCGGCAGTGGGAGCGTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS TCA 90 bp GACCCATCGGGCTTTTCATATTTCCATTTGCCAAACATGAGGTTCTaGGGTACATCGAGACGGCAAGGCATGACAATGGTGTCTCCATAT +
Preference number: 5 (lower is better)
Translates to: DPSGFSYFHLPNMRF*GTSRRQGMTMVSPY
Trigger: ATATGGAGACACCATTGTCATGCCTTGCCGTCTCGATGTACCTCAGAACCTCATGTTTGGCAAATGGAAATATGAAAAGCCCGATGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS CCA 90 bp TTGCAGATATTGTGCATGACACAGGCAGGGTATCGCCAATCTGCTTaGTCACCTCCCCACTTGGGTTTAAGGATAAATCCAAGTAGTGAA +
Preference number: 5 (lower is better)
Translates to: LQILCMTQAGYRQSA*SPPHLGLRINPSSE
Trigger: TTCACTACTTGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000170035.8
CDS CCA 90 bp TTGGTTTATGACGCTCCCACTGCCGGTAATGGTCCAATGTATAGCTaGCTTTGGAAACCCTTCCACGTGGCAGATTATAGTTTTAGACAG +
Preference number: 5 (lower is better)
Translates to: LVYDAPTAGNGPMYS*LWKPFHVADYSFRQ
Trigger: CTGTCTAAAACTATAATCTGCCACGTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACCATTACCGGCAGTGGGAGCGTCATAAACCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS-3UTR CAA 90 bp ATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAACACAGGTTGCAGCACTTaGCCATTCCTGTACCATGTG +
Preference number: 5 (lower is better)
Translates to: MSNDTSLSLQKWQNIIPNTGCST*PFLYHV
Trigger: CACATGGTACAGGAATGGCAAAGTGCTGCAACCTGT...GTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp CTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGTATGGCTCTCCTTCCACAGGTaGCAGCACTTTGCCATTCCT +
Preference number: 5 (lower is better)
Translates to: LTTATFELQVKVCSKKVWLSFHR*QHFAIP
Trigger: AGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGAG...CCATACTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp ATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAACCTCCAACCTTGTTCGGAATAAATaGTTTTCTGGCCGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: MTRLSVCRSGKTLFPTSNLVRNK*FSGRRV
Trigger: GACCCTCCGGCCAGAAAACAATTTATTCCGAACAAG...GTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp ATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTCCCAACCTCCAACTTTTGGTGGCAGCACTaGTATTGTCACCTGCTCTGT +
Preference number: 5 (lower is better)
Translates to: MTRLSVCRSGKTLFPTSNFWWQH*YCHLLC
Trigger: ACAGAGCAGGTGACAATACAAGTGCTGCCACCAAAA...GTTGGAGGTTGGGAATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS CCA 90 bp TGTTTTCTGGCCGGAGGGTCCATAATATGTCACAGAACAGGTGAATaGCATTTGTATGTCAGATCTGGTTGTCTTGTACTCCAAGGAGGA +
Preference number: 5 (lower is better)
Translates to: CFLAGGSIICHRTGE*HLYVRSGCLVLQGG
Trigger: TCCTCCTTGGAGTACAAGACAACCAGATCTGACATACAAATGCCATTCACCTGTTCTGTGACATATTATGGACCCTCCGGCCAGAAAACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CCA 90 bp TTGCAGATATTGTGCATGACACAGGCAGGGTATCGCCAATCTGCTTaGTCACCTCCCCACTTGGGTTTAAGGATAAATCCAAGTAGTAAA +
Preference number: 5 (lower is better)
Translates to: LQILCMTQAGYRQSA*SPPHLGLRINPSSK
Trigger: TTTACTACTTGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp AAAGAGCAAAGTTTAAAGTCTAGTCGCAAGTCGCTACTGGCCCTTATCCAGTCTGTATGTCAGATCTGGTaGTCTTGTACTCCAAGGAGG +
Preference number: 5 (lower is better)
Translates to: KEQSLKSSRKSLLALIQSVCQIW*SCTPRR
Trigger: CCTCCTTGGAGTACAAGACAACCAGATCTGACATAC...AGACTGGATAAGGGCCAGTAGCGACTTGCGACTAGACTTTAAACTTTGCTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp ATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAGCCGCCATGTTCCTTTaGTCAATGAGTGAGCATTTG +
Preference number: 5 (lower is better)
Translates to: MCPNLTTATFELQVKVCSAAMFL*SMSEHL
Trigger: CAAATGCTCACTCATTGACAAAAGGAACATGGCGGC...TGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp GGGCAAGATATGTGTCCCAATCTCACAACTGCCACCTTTGAGCTTCAGGTCAAATTCCCACAATCAGTTTaGCCTGGTCATTCACCTTTT +
Preference number: 5 (lower is better)
Translates to: GQDMCPNLTTATFELQVKFPQSV*PGHSPF
Trigger: AAAAGGTGAATGACCAGGCAAAACTGATTGTGGGAA...TTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAGATTGGGACACATATCTTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS GCA 90 bp TCTGAGAGGCTCAGTCTGTCCTTGTACTCTGGGACATCATCATACTaGACACTTTTCTTCGTAGAAGATCGGAATGCAATAAATACTGGG +
Preference number: 5 (lower is better)
Translates to: SERLSLSLYSGTSSY*TLFFVEDRNAINTG
Trigger: CCCAGTATTTATTGCATTCCGATCTTCTACGAAGAAAAGTGTGCAGTATGATGATGTCCCAGAGTACAAGGACAGACTGAGCCTCTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS-3UTR CAA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACCTCTCCTTCCACAGGTaGCAGCACTTTGCCATTCCT +
Preference number: 5 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDLSFHR*QHFAIP
Trigger: AGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGAG...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGTCCTACTTGCAGATATaGTGCATGACACAGGCAGGG +
Preference number: 5 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRSYLQI*CMTQAG
Trigger: CCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGA...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS TCA 90 bp AAATTGTTTTCTGGCCGGAGGGTCCATAATATGTCACAGAACAGGTaGATGGCATTTGTATGTCAGATCTGGTTGTCTTGTACTCCAAGG +
Preference number: 5 (lower is better)
Translates to: KLFSGRRVHNMSQNR*MAFVCQIWLSCTPR
Trigger: CCTTGGAGTACAAGACAACCAGATCTGACATACAAATGCCATTCACCTGTTCTGTGACATATTATGGACCCTCCGGCCAGAAAACAATTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS-3UTR CAA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCACAGGTTGCAGCACTTaGCCATTCCTGTACCATGTG +
Preference number: 5 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDITGCST*PFLYHV
Trigger: CACATGGTACAGGAATGGCAAAGTGCTGCAACCTGT...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp TGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGAACCGTACCACAGGTTGCAGCACTTaGCCATTCCTGTACCATGTG +
Preference number: 5 (lower is better)
Translates to: CSKKVWGVIDSNQNQNRTTGCST*PFLYHV
Trigger: CACATGGTACAGGAATGGCAAAGTGCTGCAACCTGT...GGTACGGTTCTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCGTATGTCAGATCTGGTaGTCTTGTACTCCAAGGAGG +
Preference number: 5 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSVCQIW*SCTPRR
Trigger: CCTCCTTGGAGTACAAGACAACCAGATCTGACATAC...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp CGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCCTTGTTCGGAATAAATaGTTTTCTGGCCGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: RVFNLVKCLSYSGNDIPSLVRNK*FSGRRV
Trigger: GACCCTCCGGCCAGAAAACAATTTATTCCGAACAAG...GCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp ACTTCAAAAAGGTCCCATGTACACTACCTCCTTAAAAAGTACCTCAGGCAGAAATGGTCACCTCCCCACTaGGGTTTAAGGATAAATCCA +
Preference number: 5 (lower is better)
Translates to: TSKRSHVHYLLKKYLRQKWSPPH*GLRINP
Trigger: TGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCA...TTTCTGCCTGAGGTACTTTTTAAGGAGGTAGTGTACATGGGACCTTTTTGAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp GATAGCAATCAGAATCAGAACCGTACCTGCTCAGACTATCCATATAAACAATTGTCCTACTTGCAGATATaGTGCATGACACAGGCAGGG +
Preference number: 5 (lower is better)
Translates to: DSNQNQNRTCSDYPYKQLSYLQI*CMTQAG
Trigger: CCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGA...CAATTGTTTATATGGATAGTCTGAGCAGGTACGGTTCTGATTCTGATTGCTATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACTCTCCATATGCTGAGTaGACAGTGTACCATCCAAGG +
Preference number: 5 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDSPYAE*TVYHPR
Trigger: CCTTGGATGGTACACTGTCAACTCAGCATATGGAGA...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp ACTTCAAAAAGGTCCCATGTACACTACCTCCTTAAAAAGTACCTCAGGCAGAAAGGTTTAGATGGTTGCTaGAACACCTTGACTAGGGTA +
Preference number: 5 (lower is better)
Translates to: TSKRSHVHYLLKKYLRQKGLDGC*NTLTRV
Trigger: TACCCTAGTCAAGGTGTTCAAGCAACCATCTAAACC...TTTCTGCCTGAGGTACTTTTTAAGGAGGTAGTGTACATGGGACCTTTTTGAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGGGTTTAGATGGTTGCTaGAACACCTTGACTAGGGTA +
Preference number: 5 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRGLDGC*NTLTRV
Trigger: TACCCTAGTCAAGGTGTTCAAGCAACCATCTAAACC...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp CCTAACTCTCAAGATAAGAAACAGCTTCTGATTGGGCAAGATATGTGTCCCAATCTGGGTAACTGTCTCTaGAAATGCAGTCACCTAACT +
Preference number: 5 (lower is better)
Translates to: PNSQDKKQLLIGQDMCPNLGNCL*KCSHLT
Trigger: AGTTAGGTGACTGCATTTCAAGAGACAGTTACCCAG...ATTGGGACACATATCTTGCCCAATCAGAAGCTGTTTCTTATCTTGAGAGTTAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGCTGGGTAACTGTCTCTaGAAATGCAGTCACCTAACT +
Preference number: 5 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRLGNCL*KCSHLT
Trigger: AGTTAGGTGACTGCATTTCAAGAGACAGTTACCCAG...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp GATAGCAATCAGAATCAGAACCGTACCTGCTCAGACTATCCATATAAACAATTGGTATGTCAGATCTGGTaGTCTTGTACTCCAAGGAGG +
Preference number: 5 (lower is better)
Translates to: DSNQNQNRTCSDYPYKQLVCQIW*SCTPRR
Trigger: CCTCCTTGGAGTACAAGACAACCAGATCTGACATAC...CAATTGTTTATATGGATAGTCTGAGCAGGTACGGTTCTGATTCTGATTGCTATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp CTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGTATGGACAGGTGAATGGCATTaGTATGTCAGATCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: LTTATFELQVKVCSKKVWTGEWH*YVRSGC
Trigger: ACAACCAGATCTGACATACAAATGCCATTCACCTGT...CCATACTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCTTTTGGTGGCAGCACTaGTATTGTCACCTGCTCTGT +
Preference number: 5 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIFWWQH*YCHLLC
Trigger: ACAGAGCAGGTGACAATACAAGTGCTGCCACCAAAA...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCGCCGCCATGTTCCTTTaGTCAATGAGTGAGCATTTG +
Preference number: 5 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDIAAMFL*SMSEHL
Trigger: CAAATGCTCACTCATTGACAAAAGGAACATGGCGGC...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp ACAAACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACTGGTCACCTCCCCACTaGGGTTTAAGGATAAATCCA +
Preference number: 5 (lower is better)
Translates to: TNLRVFNLVKCLSYSGNDWSPPH*GLRINP
Trigger: TGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCA...GTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp GATAGCAATCAGAATCAGAACCGTACCTGCTCAGACTATCCATATAAACAATTGTGGTCACCTCCCCACTaGGGTTTAAGGATAAATCCA +
Preference number: 5 (lower is better)
Translates to: DSNQNQNRTCSDYPYKQLWSPPH*GLRINP
Trigger: TGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCA...CAATTGTTTATATGGATAGTCTGAGCAGGTACGGTTCTGATTCTGATTGCTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp CTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGTATGGTTCCCACAATCAGTTTaGCCTGGTCATTCACCTTTT +
Preference number: 5 (lower is better)
Translates to: LTTATFELQVKVCSKKVWFPQSV*PGHSPF
Trigger: AAAAGGTGAATGACCAGGCAAAACTGATTGTGGGAA...CCATACTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp AAAGTGACAGGGCAAACAAAACAGAGTATTGTTCTAACTTTTCACTGCACATCTTCTCCATATGCTGAGTaGACAGTGTACCATCCAAGG +
Preference number: 5 (lower is better)
Translates to: KVTGQTKQSIVLTFHCTSSPYAE*TVYHPR
Trigger: CCTTGGATGGTACACTGTCAACTCAGCATATGGAGA...AGATGTGCAGTGAAAAGTTAGAACAATACTCTGTTTTGTTTGCCCTGTCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS-3UTR CAA 90 bp TTACACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTACAGGTGAATGGCATTaGTATGTCAGATCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: LHMSNDTSLSLQKWQNIITGEWH*YVRSGC
Trigger: ACAACCAGATCTGACATACAAATGCCATTCACCTGT...AATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGACAGGTGAATGGCATTaGTATGTCAGATCTGGTTGT +
Preference number: 5 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRTGEWH*YVRSGC
Trigger: ACAACCAGATCTGACATACAAATGCCATTCACCTGT...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp GTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCCCTAGCAGGTTCCCACAATCAGTTTaGCCTGGTCATTCACCTTTT +
Preference number: 5 (lower is better)
Translates to: VFNLVKCLSYSGNDIPSRFPQSV*PGHSPF
Trigger: AAAAGGTGAATGACCAGGCAAAACTGATTGTGGGAA...CCTGCTAGGGATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp CTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGTATGGTGTTTTGATGCAGTTTaGGACTTCTTCATGTACAGC +
Preference number: 5 (lower is better)
Translates to: LTTATFELQVKVCSKKVWCFDAV*DFFMYS
Trigger: GCTGTACATGAAGAAGTCCAAAACTGCATCAAAACA...CCATACTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp TACATCGTGATCTGCGACTATGGGGATATGAGCTTCCAACTTTCTCTGACACTTCCTTGTTTACATGTTTaGATGCAGTTTTGGACTTCT +
Preference number: 5 (lower is better)
Translates to: YIVICDYGDMSFQLSLTLPCLHV*MQFWTS
Trigger: AGAAGTCCAAAACTGCATCAAAACATGTAAACAAGG...AAGTGTCAGAGAAAGTTGGAAGCTCATATCCCCATAGTCGCAGATCACGATGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGCTTGTTCGGAATAAATaGTTTTCTGGCCGGAGGGTC +
Preference number: 5 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQLVRNK*FSGRRV
Trigger: GACCCTCCGGCCAGAAAACAATTTATTCCGAACAAG...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp AACCTCCGTGTGTTCAATTTGGTGAAGTGTTTGTCTTATTCTGGAAATGACATCTCAGTGTGTAAGTGTTaGAGCTTCTTATGCCTTCAG +
Preference number: 5 (lower is better)
Translates to: NLRVFNLVKCLSYSGNDISVCKC*SFLCLQ
Trigger: CTGAAGGCATAAGAAGCTCAAACACTTACACACTGA...GATGTCATTTCCAGAATAAGACAAACACTTCACCAAATTGAACACACGGAGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000164728.8
CDS-3UTR CAA 90 bp TTACACATGTCCAATGACACGTCTCTCAGTCTGCAGAAGTGGCAAAACATTATTTGTTTTGATGCAGTTTaGGACTTCTTCATGTACAGC +
Preference number: 5 (lower is better)
Translates to: LHMSNDTSLSLQKWQNIICFDAV*DFFMYS
Trigger: GCTGTACATGAAGAAGTCCAAAACTGCATCAAAACA...AATAATGTTTTGCCACTTCTGCAGACTGAGAGACGTGTCATTGGACATGTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS-3UTR CAA 90 bp CTCACAACTGCCACCTTTGAGCTTCAGGTCAAAGTATGTTCAAAGAAAGTATGGCCTTGTTTACATGTTTaGATGCAGTTTTGGACTTCT +
Preference number: 5 (lower is better)
Translates to: LTTATFELQVKVCSKKVWPCLHV*MQFWTS
Trigger: AGAAGTCCAAAACTGCATCAAAACATGTAAACAAGG...CCATACTTTCTTTGAACATACTTTGACCTGAAGCTCAAAGGTGGCAGTTGTGAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGCTGGGTAACTGTCTCTaGAAATGCAGTCACCTAACT +
Preference number: 5 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQLGNCL*KCSHLT
Trigger: AGTTAGGTGACTGCATTTCAAGAGACAGTTACCCAG...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000023312.14
ENSMUST00000167115.8
CDS-3UTR CAA 90 bp GTCAAAGTATGTTCAAAGAAAGTATGGGGTGTTATTGATAGCAATCAGAATCAGTCAGTGTGTAAGTGTTaGAGCTTCTTATGCCTTCAG +
Preference number: 5 (lower is better)
Translates to: VKVCSKKVWGVIDSNQNQSVCKC*SFLCLQ
Trigger: CTGAAGGCATAAGAAGCTCAAACACTTACACACTGA...CTGATTCTGATTGCTATCAATAACACCCCATACTTTCTTTGAACATACTTTGAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000023312.14
CDS TCA 72 bp GAGACGGCAAGGCATGACAATGGTGTCTCCATATGCTaGGTTGACAGTGTACCATCCAAGGCCTGGTCTGAG +
Preference number: 6 (lower is better)
Translates to: ETARHDNGVSIC*VDSVPSKAWSE
Trigger: CTCAGACCAGGCCTTGGATGGTACACTGTCAACTCAGCATATGGAGACACCATTGTCATGCCTTGCCGTCTC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS TCA 72 bp CACCACAGTCGCGTTCCTACTTGCAGATATTGTGCATaGCACAGGCAGGGTATCGCCAATCTGCTTGGTCAC +
Preference number: 6 (lower is better)
Translates to: HHSRVPTCRYCA*HRQGIANLLGH
Trigger: GTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp GGAGCCGGATGTTATCCTTCATCCACACCACAGTCGCGTTCCTACTaGCAGATATTGTGCATGACACAGGCAGGGTATCGCCAATCTGCT +
Preference number: 6 (lower is better)
Translates to: GAGCYPSSTPQSRSY*QILCMTQAGYRQSA
Trigger: AGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGAAGGATAACATCCGGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CCA 72 bp CAGCATCCTGATAATGAAGACTGGAAAAGGAAGGGCTaGACCGGAGCCGGATGTTATCCTTCATCCACACCA +
Preference number: 6 (lower is better)
Translates to: QHPDNEDWKRKG*TGAGCYPSSTP
Trigger: TGGTGTGGATGAAGGATAACATCCGGCTCCGGTCCAGCCCTTCCTTTTCCAGTCTTCATTATCAGGATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 72 bp TCATCCACACCACAGTCGCGTTCCTACTTGCAGATATaGTGCATGACACAGGCAGGGTATCGCCAATCTGCT +
Preference number: 6 (lower is better)
Translates to: SSTPQSRSYLQI*CMTQAGYRQSA
Trigger: AGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp TGTTATCCTTCATCCACACCACAGTCGCGTTCCTACTTGCAGATATaGTGCATGACACAGGCAGGGTATCGCCAATCTGCTTGGTCACCT +
Preference number: 6 (lower is better)
Translates to: CYPSSTPQSRSYLQI*CMTQAGYRQSAWSP
Trigger: AGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATCTGCAAGTAGGAACGCGACTGTGGTGTGGATGAAGGATAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CCA 72 bp TTGTGCATGACACAGGCAGGGTATCGCCAATCTGCTTaGTCACCTCCCCACTTGGGTTTAAGGATAAATCCA +
Preference number: 6 (lower is better)
Translates to: LCMTQAGYRQSA*SPPHLGLRINP
Trigger: TGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 72 bp ATTGTGCATGACACAGGCAGGGTATCGCCAATCTGCTaGGTCACCTCCCCACTTGGGTTTAAGGATAAATCC +
Preference number: 6 (lower is better)
Translates to: IVHDTGRVSPIC*VTSPLGFKDKS
Trigger: GGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp CGAGGGCAGCGAGGAGGAGACCAACGACAATTCCCACAATCAGTTTaGCCTGGTCATTCACCTTTTCTCTGTTTTCATTCGCAGAGACAT +
Preference number: 6 (lower is better)
Translates to: RGQRGGDQRQFPQSV*PGHSPFLCFHSQRH
Trigger: ATGTCTCTGCGAATGAAAACAGAGAAAAGGTGAATGACCAGGCAAAACTGATTGTGGGAATTGTCGTTGGTCTCCTCCTCGCTGCCCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170035.8
CDS GCA 72 bp GATATTGTGCATGACACAGGCAGGGTATCGCCAATCTaGTTGGTCACCTCCCCACTTGGGTTTAAGGATAAA +
Preference number: 6 (lower is better)
Translates to: DIVHDTGRVSPI*LVTSPLGFKDK
Trigger: TTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCATGCACAATATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp CTGGCCGGAGGGTCCATAATATGTCACAGAACAGGTGAATGGCATTaGTATGTCAGATCTGGTTGTCTTGTACTCCAAGGAGGAAGTCAC +
Preference number: 6 (lower is better)
Translates to: LAGGSIICHRTGEWH*YVRSGCLVLQGGSH
Trigger: GTGACTTCCTCCTTGGAGTACAAGACAACCAGATCTGACATACAAATGCCATTCACCTGTTCTGTGACATATTATGGACCCTCCGGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp GATGGTTGCTTGAACACCTTGACTAGGGTAGGTGCTTCAAACACATaGTCCTCGGTCACTAGCATGCACACAAATCTCTTCTCATCACTG +
Preference number: 6 (lower is better)
Translates to: DGCLNTLTRVGASNT*SSVTSMHTNLFSSL
Trigger: CAGTGATGAGAAGAGATTTGTGTGCATGCTAGTGACCGAGGACAATGTGTTTGAAGCACCTACCCTAGTCAAGGTGTTCAAGCAACCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000170035.8
CDS CCA 72 bp GTCCAATGTATAGCTGGCTTTGGAAACCCTTCCACGTaGCAGATTATAGTTTTAGACAGTCCACTGGGGTCA +
Preference number: 6 (lower is better)
Translates to: VQCIAGFGNPST*QIIVLDSPLGS
Trigger: TGACCCCAGTGGACTGTCTAAAACTATAATCTGCCACGTGGAAGGGTTTCCAAAGCCAGCTATACATTGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CCA 72 bp CCCACTGCCGGTAATGGTCCAATGTATAGCTGGCTTTaGAAACCCTTCCACGTGGCAGATTATAGTTTTAGA +
Preference number: 6 (lower is better)
Translates to: PTAGNGPMYSWL*KPFHVADYSFR
Trigger: TCTAAAACTATAATCTGCCACGTGGAAGGGTTTCCAAAGCCAGCTATACATTGGACCATTACCGGCAGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 72 bp CTGAACACCTTGACTAGGGTAGGTGCTTCAAACACATaGTCCTCGGTCACTAGCATGCACACAAATCTCTTC +
Preference number: 6 (lower is better)
Translates to: LNTLTRVGASNT*SSVTSMHTNLF
Trigger: GAAGAGATTTGTGTGCATGCTAGTGACCGAGGACAATGTGTTTGAAGCACCTACCCTAGTCAAGGTGTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000168071.2
CDS TCA 72 bp GGCTTTTCATATTTCCATTTGCCAAACATGAGGTTCTaGGGTACATCGAGACGGCAAGGCATGACAATGGTG +
Preference number: 6 (lower is better)
Translates to: GFSYFHLPNMRF*GTSRRQGMTMV
Trigger: CACCATTGTCATGCCTTGCCGTCTCGATGTACCTCAGAACCTCATGTTTGGCAAATGGAAATATGAAAAGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS CAA 72 bp TTGAACACCTTGACTAGGGTAGGTGCTTCAAACACATaGTCCTCGGTCACTAGCATGCACACAAATCTCTTC +
Preference number: 6 (lower is better)
Translates to: LNTLTRVGASNT*SSVTSMHTNLF
Trigger: GAAGAGATTTGTGTGCATGCTAGTGACCGAGGACAATGTGTTTGAAGCACCTACCCTAGTCAAGGTGTTCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000170035.8
CDS GCA 72 bp TCTCTGTTTTCATCACTTATATCGTCTGCCTCATCGTaGTCTGGAATACTTATCGCAGAGACATTCAGGGAG +
Preference number: 6 (lower is better)
Translates to: SLFSSLISSASS*SGILIAETFRE
Trigger: CTCCCTGAATGTCTCTGCGATAAGTATTCCAGAGCACGATGAGGCAGACGATATAAGTGATGAAAACAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
CDS CAA 72 bp CTTTTTAAAAAGTATGGCCACCTCTCCTTCCACAGGTaGCAGCACTTTGCCATTCCTGTACCATGTGATGTT +
Preference number: 6 (lower is better)
Translates to: LFKKYGHLSFHR*QHFAIPVPCDV
Trigger: AACATCACATGGTACAGGAATGGCAAAGTGCTGCAACCTGTGGAAGGAGAGGTGGCCATACTTTTTAAAAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 72 bp GCAGGGTATCGCCAATCTGCTTGGTCACCTCCCCACTaGGGTTTAAGGATAAATCCAAGTAGTAAATATCAA +
Preference number: 6 (lower is better)
Translates to: AGYRQSAWSPPH*GLRINPSSKYQ
Trigger: TTGATATTTACTACTTGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167115.8
CDS CAA 72 bp GGGTCCATAATATGTCACAGAACAGGTGAATGGCATTaGTATGTCAGATCTGGTTGTCTTGTACTCCAAGGA +
Preference number: 6 (lower is better)
Translates to: GSIICHRTGEWH*YVRSGCLVLQG
Trigger: TCCTTGGAGTACAAGACAACCAGATCTGACATACAAATGCCATTCACCTGTTCTGTGACATATTATGGACCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000167115.8
ENSMUST00000170035.8
CDS CAA 90 bp ATGACACAGGCAGGGTATCGCCAATCTGCTTGGTCACCTCCCCACTaGGGTTTAAGGATAAATCCAAGTAGTAAATATCAAAGATTTCTT +
Preference number: 6 (lower is better)
Translates to: MTQAGYRQSAWSPPH*GLRINPSSKYQRFL
Trigger: AAGAAATCTTTGATATTTACTACTTGGATTTATCCTTAAACCCAAGTGGGGAGGTGACCAAGCAGATTGGCGATACCCTGCCTGTGTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000167115.8
CDS CCA 72 bp ACTTTTCTTCGTAGAAGATCGGAATGCAATAAATACTaGGGACCCATCGGGCTTTTCATATTTCCATTTGCC +
Preference number: 6 (lower is better)
Translates to: TFLRRRSECNKY*GPIGLFIFPFA
Trigger: GGCAAATGGAAATATGAAAAGCCCGATGGGTCCCCAGTATTTATTGCATTCCGATCTTCTACGAAGAAAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000168071.2
ENSMUST00000170035.8
CDS CAA 72 bp TTTACAATTTCAGGTTTAGATGGTTGCTTGAACACCTaGACTAGGGTAGGTGCTTCAAACACATTGTCCTCG +
Preference number: 6 (lower is better)
Translates to: FTISGLDGCLNT*TRVGASNTLSS
Trigger: CGAGGACAATGTGTTTGAAGCACCTACCCTAGTCAAGGTGTTCAAGCAACCATCTAAACCTGAAATTGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000170035.8
CDS TCA 72 bp CTGTCTCTTGAAATGCAGTCACCTAACTTTTTCAGCTaGTCTGTTTCAAGAAAGGGTGCTTTGTTTACAATT +
Preference number: 6 (lower is better)
Translates to: LSLEMQSPNFFS*SVSRKGALFTI
Trigger: AATTGTAAACAAAGCACCCTTTCTTGAAACAGATCAGCTGAAAAAGTTAGGTGACTGCATTTCAAGAGACAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000023312.14
ENSMUST00000164728.8
ENSMUST00000170035.8