Pregenerated sensors for ALAD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028393Ensembl transcript IDs: ENSMUST00000030090.4, ENSMUST00000107444.8
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CACCGGCTCTGCGGAAGGCCGTCATGGTCTCCAGTACAGCAGTCCTaGGATCAAAGGCCCCGGCCTGGGCTCCGTGCCACAACATGGCAA | + |
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Preference number: 5 (lower is better) Translates to: HRLCGRPSWSPVQQS*DQRPRPGLRATTWQ Trigger: TTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGAGACCATGACGGCCTTCCGCAGAGCCGGTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 90 bp | CCGGCCTGGGCTCCGTGCCACAACATGGCAAACTCTCCAGACACCTaGTATACTGCGAGGGGGAGCTCGGGGTGCTTGTCCTTCACCTCT | + |
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Preference number: 5 (lower is better) Translates to: PAWAPCHNMANSPDT*YTARGSSGCLSFTS Trigger: AGAGGTGAAGGACAAGCACCCCGAGCTCCCCCTCGCAGTATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 90 bp | GTCCGTCCATCATGTCTGACGGAGCTACAACCTGACAGCCTGCCTTaGCATAGGCCAGTGCCACCTCTGCCAACCGCTGTCGGCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: VRPSCLTELQPDSLP*HRPVPPLPTAVGSP Trigger: AGGAGAGCCGACAGCGGTTGGCAGAGGTGGCACTGGCCTATGCCAAGGCAGGCTGTCAGGTTGTAGCTCCGTCAGACATGATGGACGGAC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 90 bp | AGTCCTCAGAGTCAGCTGCAGAGCCCTGTTCATCCTTGGGAACTCTaGTGGGGACGCCAAAGATCAGGACACAGCGCAGGCCAGCTTCCA | + |
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Preference number: 5 (lower is better) Translates to: SPQSQLQSPVHPWEL*WGRQRSGHSAGQLP Trigger: TGGAAGCTGGCCTGCGCTGTGTCCTGATCTTTGGCGTCCCCAGCAGAGTTCCCAAGGATGAACAGGGCTCTGCAGCTGACTCTGAGGACT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 90 bp | TCCAGTACAGCAGTCCTGAGATCAAAGGCCCCGGCCTGGGCTCCGTaGCACAACATGGCAAACTCTCCAGACACCTGGTATACTGCGAGG | + |
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Preference number: 5 (lower is better) Translates to: SSTAVLRSKAPAWAP*HNMANSPDTWYTAR Trigger: CCTCGCAGTATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 90 bp | TCACCTCTCGCACCATGTCCAGGTAGGGCAATCCCGGCTTCACCATaGGCATGTCAGCTCCTTCTTGAATGTCTCGGGCCACTGCTCGGA | + |
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Preference number: 5 (lower is better) Translates to: SPLAPCPGRAIPASP*ACQLLLECLGPLLG Trigger: TCCGAGCAGTGGCCCGAGACATTCAAGAAGGAGCTGACATGCTCATGGTGAAGCCGGGATTGCCCTACCTGGACATGGTGCGAGAGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 90 bp | CAGCAGACGGACAGCCTCAATAGTTGGGGAGTCCTCAGAGTCAGCTaGAGAGCCCTGTTCATCCTTGGGAACTCTGCTGGGGACGCCAAA | + |
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Preference number: 5 (lower is better) Translates to: QQTDSLNSWGVLRVS*RALFILGNSAGDAK Trigger: TTTGGCGTCCCCAGCAGAGTTCCCAAGGATGAACAGGGCTCTGCAGCTGACTCTGAGGACTCCCCAACTATTGAGGCTGTCCGTCTGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 90 bp | GAGGGAAGGGAAGGTCTTCCTCAGCAGACGGACAGCCTCAATAGTTaGGGAGTCCTCAGAGTCAGCTGCAGAGCCCTGTTCATCCTTGGG | + |
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Preference number: 5 (lower is better) Translates to: EGREGLPQQTDSLNS*GVLRVSCRALFILG Trigger: CCCAAGGATGAACAGGGCTCTGCAGCTGACTCTGAGGACTCCCCAACTATTGAGGCTGTCCGTCTGCTGAGGAAGACCTTCCCTTCCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 90 bp | GTCATGGTCTCCAGTACAGCAGTCCTGAGATCAAAGGCCCCGGCCTaGGCTCCGTGCCACAACATGGCAAACTCTCCAGACACCTGGTAT | + |
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Preference number: 5 (lower is better) Translates to: VMVSSTAVLRSKAPA*APCHNMANSPDTWY Trigger: ATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGAGACCATGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 90 bp | TCACAGAGACCCTGTTGCCAAGTCCATGTTTTAGCAGGGCAGCCTTaGTGGCCTCAACTCGTCCGTCCATCATGTCTGACGGAGCTACAA | + |
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Preference number: 5 (lower is better) Translates to: SQRPCCQVHVLAGQP*WPQLVRPSCLTELQ Trigger: TTGTAGCTCCGTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCTGCCCTGCTAAAACATGGACTTGGCAACAGGGTCTCTGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 90 bp | ACTGAGCTGCATCCCGGAAAGGACCGTAGAAACAGGAGGCAAATTTaGCACTATAGCTCATCACAGAGACCCTGTTGCCAAGTCCATGTT | + |
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Preference number: 5 (lower is better) Translates to: TELHPGKDRRNRRQI*HYSSSQRPCCQVHV Trigger: AACATGGACTTGGCAACAGGGTCTCTGTGATGAGCTATAGTGCCAAATTTGCCTCCTGTTTCTACGGTCCTTTCCGGGATGCAGCTCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 72 bp | GAGCATGTCAGCTCCTTCTTGAATGTCTCGGGCCACTaGTCGGAGGGCCAGGCCACGGGCACCAGGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: EHVSSFLNVSGH*SEGQATGTRRQ Trigger: CTGCCTCCTGGTGCCCGTGGCCTGGCCCTCCGAGCAGTGGCCCGAGACATTCAAGAAGGAGCTGACATGCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 72 bp | TGCGGAAGGCCGTCATGGTCTCCAGTACAGCAGTCCTaGGATCAAAGGCCCCGGCCTGGGCTCCGTGCCACA | + |
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Preference number: 6 (lower is better) Translates to: CGRPSWSPVQQS*DQRPRPGLRAT Trigger: TGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGAGACCATGACGGCCTTCCGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 72 bp | AGCTACAACCTGACAGCCTGCCTTGGCATAGGCCAGTaGCACCTCTGCCAACCGCTGTCGGCTCTCCTCTGC | + |
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Preference number: 6 (lower is better) Translates to: SYNLTACLGIGQ*HLCQPLSALLC Trigger: GCAGAGGAGAGCCGACAGCGGTTGGCAGAGGTGGCACTGGCCTATGCCAAGGCAGGCTGTCAGGTTGTAGCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | GACGGTGGAGGCAGCAGTCTGCCAGCTCCGAAGCAGTaGGTGAAAGTAGCCGCTGTGCAGAACAGACTGGTG | + |
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Preference number: 6 (lower is better) Translates to: DGGGSSLPAPKQ*VKVAAVQNRLV Trigger: CACCAGTCTGTTCTGCACAGCGGCTACTTTCACCCACTGCTTCGGAGCTGGCAGACTGCTGCCTCCACCGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | GCTCCGTGCCACAACATGGCAAACTCTCCAGACACCTaGTATACTGCGAGGGGGAGCTCGGGGTGCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: APCHNMANSPDT*YTARGSSGCLS Trigger: GGACAAGCACCCCGAGCTCCCCCTCGCAGTATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | GATCAAAGGCCCCGGCCTGGGCTCCGTGCCACAACATaGCAAACTCTCCAGACACCTGGTATACTGCGAGGG | + |
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Preference number: 6 (lower is better) Translates to: DQRPRPGLRATT*QTLQTPGILRG Trigger: CCCTCGCAGTATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CAA 72 bp | CAATCCCGGCTTCACCATGAGCATGTCAGCTCCTTCTaGAATGTCTCGGGCCACTGCTCGGAGGGCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: QSRLHHEHVSSF*NVSGHCSEGQA Trigger: GGCCTGGCCCTCCGAGCAGTGGCCCGAGACATTCAAGAAGGAGCTGACATGCTCATGGTGAAGCCGGGATTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 72 bp | AATCCCGGCTTCACCATGAGCATGTCAGCTCCTTCTTaGATGTCTCGGGCCACTGCTCGGAGGGCCAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: NPGFTMSMSAPS*MSRATARRARP Trigger: TGGCCTGGCCCTCCGAGCAGTGGCCCGAGACATTCAAGAAGGAGCTGACATGCTCATGGTGAAGCCGGGATT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS GCA 72 bp | GCAGTCCTGAGATCAAAGGCCCCGGCCTGGGCTCCGTaGCACAACATGGCAAACTCTCCAGACACCTGGTAT | + |
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Preference number: 6 (lower is better) Translates to: AVLRSKAPAWAP*HNMANSPDTWY Trigger: ATACCAGGTGTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | TCATGTCTGACGGAGCTACAACCTGACAGCCTGCCTTaGCATAGGCCAGTGCCACCTCTGCCAACCGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: SCLTELQPDSLP*HRPVPPLPTAV Trigger: GACAGCGGTTGGCAGAGGTGGCACTGGCCTATGCCAAGGCAGGCTGTCAGGTTGTAGCTCCGTCAGACATGA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | TCCAGTACAGCAGTCCTGAGATCAAAGGCCCCGGCCTaGGCTCCGTGCCACAACATGGCAAACTCTCCAGAC | + |
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Preference number: 6 (lower is better) Translates to: SSTAVLRSKAPA*APCHNMANSPD Trigger: GTCTGGAGAGTTTGCCATGTTGTGGCACGGAGCCCAGGCCGGGGCCTTTGATCTCAGGACTGCTGTACTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 72 bp | GCACCATGTCCAGGTAGGGCAATCCCGGCTTCACCATaGGCATGTCAGCTCCTTCTTGAATGTCTCGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: APCPGRAIPASP*ACQLLLECLGP Trigger: TGGCCCGAGACATTCAAGAAGGAGCTGACATGCTCATGGTGAAGCCGGGATTGCCCTACCTGGACATGGTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | AGTCCTCAGAGTCAGCTGCAGAGCCCTGTTCATCCTTaGGAACTCTGCTGGGGACGCCAAAGATCAGGACAC | + |
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Preference number: 6 (lower is better) Translates to: SPQSQLQSPVHP*ELCWGRQRSGH Trigger: GTGTCCTGATCTTTGGCGTCCCCAGCAGAGTTCCCAAGGATGAACAGGGCTCTGCAGCTGACTCTGAGGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | GAAGGTCTTCCTCAGCAGACGGACAGCCTCAATAGTTaGGGAGTCCTCAGAGTCAGCTGCAGAGCCCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: EGLPQQTDSLNS*GVLRVSCRALF Trigger: GAACAGGGCTCTGCAGCTGACTCTGAGGACTCCCCAACTATTGAGGCTGTCCGTCTGCTGAGGAAGACCTTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 72 bp | AGCCTTGATGGCCTCAACTCGTCCGTCCATCATGTCTaGCGGAGCTACAACCTGACAGCCTGCCTTGGCATA | + |
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Preference number: 6 (lower is better) Translates to: SLDGLNSSVHHV*RSYNLTACLGI Trigger: TATGCCAAGGCAGGCTGTCAGGTTGTAGCTCCGTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS TCA 72 bp | CCCTGTTGCCAAGTCCATGTTTTAGCAGGGCAGCCTTaGTGGCCTCAACTCGTCCGTCCATCATGTCTGACG | + |
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Preference number: 6 (lower is better) Translates to: PCCQVHVLAGQP*WPQLVRPSCLT Trigger: CGTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCTGCCCTGCTAAAACATGGACTTGGCAACAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CAA 72 bp | ACCCTGTTGCCAAGTCCATGTTTTAGCAGGGCAGCCTaGATGGCCTCAACTCGTCCGTCCATCATGTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: TLLPSPCFSRAA*MASTRPSIMSD Trigger: GTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCTGCCCTGCTAAAACATGGACTTGGCAACAGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CAA 90 bp | ATCACAGAGACCCTGTTGCCAAGTCCATGTTTTAGCAGGGCAGCCTaGATGGCCTCAACTCGTCCGTCCATCATGTCTGACGGAGCTACA | + |
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Preference number: 6 (lower is better) Translates to: ITETLLPSPCFSRAA*MASTRPSIMSDGAT Trigger: TGTAGCTCCGTCAGACATGATGGACGGACGAGTTGAGGCCATCAAGGCTGCCCTGCTAAAACATGGACTTGGCAACAGGGTCTCTGTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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| CDS CCA 72 bp | CATCCCGGAAAGGACCGTAGAAACAGGAGGCAAATTTaGCACTATAGCTCATCACAGAGACCCTGTTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: HPGKDRRNRRQI*HYSSSQRPCCQ Trigger: TTGGCAACAGGGTCTCTGTGATGAGCTATAGTGCCAAATTTGCCTCCTGTTTCTACGGTCCTTTCCGGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030090.4 ENSMUST00000107444.8 |
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