Pregenerated sensors for AKTIP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031667Ensembl transcript IDs: ENSMUST00000120213.9, ENSMUST00000120349.8, ENSMUST00000120426.9, ENSMUST00000125257.3, ENSMUST00000211050.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTACAGCAAGTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTTaGAAGTGCTGCACTCGGAGTCTGTCCTCTACACCCTTCTTCATG | + |
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Preference number: 1 (lower is better) Translates to: LQQVSRLKLGSQAST*KCCTRSLSSTPFFM Trigger: CATGAAGAAGGGTGTAGAGGACAGACTCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACTTGCTGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR TCA 90 bp | GTTCCTAATGCTTCTGAGATAGATGTTTACAGCAAGTCAGCAGGCTaGAGCTGGGAAGCCAGGCTTCTACTTGAAAGTGCTGCACTCGGA | + |
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Preference number: 1 (lower is better) Translates to: VPNASEIDVYSKSAG*SWEARLLLESAALG Trigger: TCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACTTGCTGTAAACATCTATCTCAGAAGCATTAGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR CAA 90 bp | TTTACAGCAAGTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTaGAAAGTGCTGCACTCGGAGTCTGTCCTCTACACCCTTCTTCAT | + |
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Preference number: 2 (lower is better) Translates to: FTASQQAEAGKPGFY*KVLHSESVLYTLLH Trigger: ATGAAGAAGGGTGTAGAGGACAGACTCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACTTGCTGTAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR CAA 90 bp | TTTGTAGGTCACAAAAGAAGACAGGTCCTTCCAGAACATCATGCGTaGTTACAGAACTCAGCCACAGGCCCGGAGCCAGGTAACCATGTT | + |
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Preference number: 2 (lower is better) Translates to: FVGHKRRQVLPEHHA*LQNSATGPEPGNHV Trigger: AACATGGTTACCTGGCTCCGGGCCTGTGGCTGAGTTCTGTAACAACGCATGATGTTCTGGAAGGACCTGTCTTCTTTTGTGACCTACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAGCCAGGCTTCTACTTaGAAGTGCTGCACTCGGAGT | + |
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Preference number: 2 (lower is better) Translates to: MKHPGSAYVPNASEIDVYSQAST*KCCTRS Trigger: ACTCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCT...GTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR TCA 90 bp | TTAGATACGTGTTTTTGTTTTCTCCTTGGCCGTTCAGATCTAACAACTTCCACTTGGCAACAGGTCCACTaGGCTGCTCACTGTCATGCC | + |
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Preference number: 2 (lower is better) Translates to: LDTCFCFLLGRSDLTTSTWQQVH*AAHCHA Trigger: GGCATGACAGTGAGCAGCTCAGTGGACCTGTTGCCA...AGTGGAAGTTGTTAGATCTGAACGGCCAAGGAGAAAACAAAAACACGTATCTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR CAA 90 bp | CAGGCCGGCCTCCTTACTACAGTTCAGGTTTTCATGAATAGACAGTaGTTCATTTACTATCCAGTCTTTGAATATAGTGGCAACAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: QAGLLTTVQVFMNRQ*FIYYPVFEYSGNRS Trigger: GGACCTGTTGCCACTATATTCAAAGACTGGATAGTAAATGAACAACTGTCTATTCATGAAAACCTGAACTGTAGTAAGGAGGCCGGCCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR-3UTR GCA 90 bp | GTTATCAGGAATATACACCGTAAATTTGAATACGCCATCCTGATACAGCCCGTGACTCCTGGCAGCTTCTaGTTCACTACCAGAGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: VIRNIHRKFEYAILIQPVTPGSF*FTTRVN Trigger: ATTTACTCTGGTAGTGAAGCAGAAGCTGCCAGGAGT...CACGGGCTGTATCAGGATGGCGTATTCAAATTTACGGTGTATATTCCTGATAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211050.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGTCCTCTACACCCTTCTTCATGGCCTAACATATGTACAGCTGAAACTACCAAATAATTTGGAGTACTaGACTAGATCCACCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: SVLYTLLHGLTYVQLKLPNNLEY*TRSTLT Trigger: TGTCAGGGTGGATCTAGTTCAGTACTCCAAATTATT...TGGTAGTTTCAGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAGAGGACAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR CCA 90 bp | ATGAAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACCTACACCCTTCTTCATaGCCTAACATATGTACAGCT | + |
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Preference number: 2 (lower is better) Translates to: MKHPGSAYVPNASEIDVYLHPSS*PNICTA Trigger: AGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAG...GTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTTCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR TCA 90 bp | ATGAAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAATAATTTGGAGTACTaGACTAGATCCACCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: MKHPGSAYVPNASEIDVYNNLEY*TRSTLT Trigger: TGTCAGGGTGGATCTAGTTCAGTACTCCAAATTATT...GTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR GCA 90 bp | GTTATCAGGAATATACACCGTAAATTTGAATACGCCATCCTGATACAGCCCGTGTACCAGAGTAAATTCTaGAAGAAGCGAATATTCCAG | + |
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Preference number: 2 (lower is better) Translates to: VIRNIHRKFEYAILIQPVYQSKF*KKRIFQ Trigger: CTGGAATATTCGCTTCTTGCAGAATTTACTCTGGTA...CACGGGCTGTATCAGGATGGCGTATTCAAATTTACGGTGTATATTCCTGATAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211050.2 |
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| 3UTR TCA 72 bp | GTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTTaGAAGTGCTGCACTCGGAGTCTGTCCTCTACACCC | + |
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Preference number: 3 (lower is better) Translates to: VSRLKLGSQAST*KCCTRSLSSTP Trigger: GGGTGTAGAGGACAGACTCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR GCA 72 bp | AGGTCACAAAAGAAGACAGGTCCTTCCAGAACATCATaGGTTGTTACAGAACTCAGCCACAGGCCCGGAGCC | + |
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Preference number: 3 (lower is better) Translates to: RSQKKTGPSRTS*VVTELSHRPGA Trigger: GGCTCCGGGCCTGTGGCTGAGTTCTGTAACAACGCATGATGTTCTGGAAGGACCTGTCTTCTTTTGTGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR CCA 72 bp | GCATTTCAAGTTCCTGAGCTTCTCTTCTGCAGGCTGTaGTTTACAGGCCGGCCTCCTTACTACAGTTCAGGT | + |
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Preference number: 3 (lower is better) Translates to: AFQVPELLFCRL*FTGRPPYYSSG Trigger: ACCTGAACTGTAGTAAGGAGGCCGGCCTGTAAACCACAGCCTGCAGAAGAGAAGCTCAGGAACTTGAAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR CCA 72 bp | GCTGCACTCGGAGTCTGTCCTCTACACCCTTCTTCATaGCCTAACATATGTACAGCTGAAACTACCAACTCC | + |
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Preference number: 3 (lower is better) Translates to: AALGVCPLHPSS*PNICTAETTNS Trigger: GGAGTTGGTAGTTTCAGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAGAGGACAGACTCCGAGTGCAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR GCA 72 bp | CAGTCTTTGAATATAGTGGCAACAGGTCCACTGAGCTaGTCACTGTCATGCCTGAGGAGGATCTCTCTAAGT | + |
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Preference number: 3 (lower is better) Translates to: QSLNIVATGPLS*SLSCLRRISLS Trigger: ACTTAGAGAGATCCTCCTCAGGCATGACAGTGAGCAGCTCAGTGGACCTGTTGCCACTATATTCAAAGACTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR-3UTR CAA 90 bp | CTCTACACCCTTCTTCATGGCCTAACATATGTACAGCTGAAACTACCAACTCCAATTACATGGTACTCATaGTACTCATTACAGTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LYTLLHGLTYVQLKLPTPITWYS*YSLQSL Trigger: GAGAGACTGTAATGAGTACAATGAGTACCATGTAAT...TGGAGTTGGTAGTTTCAGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR CAA 90 bp | ATGAAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACATTACATGGTACTCATaGTACTCATTACAGTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: MKHPGSAYVPNASEIDVYITWYS*YSLQSL Trigger: GAGAGACTGTAATGAGTACAATGAGTACCATGTAAT...GTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTTCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR-3UTR CAA 90 bp | TCTTGCCTACCATGCTGCTCAGCTTGGTCTATTTCTTTGAACATCTTTTCTTGCTTTACTATCCAGTCTTaGAATATAGTGGCAACAGGT | + |
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Preference number: 3 (lower is better) Translates to: SCLPCCSAWSISLNIFSCFTIQS*NIVATG Trigger: ACCTGTTGCCACTATATTCAAAGACTGGATAGTAAA...GCAAGAAAAGATGTTCAAAGAAATAGACCAAGCTGAGCAGCATGGTAGGCAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR GCA 72 bp | ATACAACCGCTCTTTTTAATTAAGAAGAATATGCATTaGCATCCTTGTTCTACCTGTTTAGTTTCTGATGAG | + |
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Preference number: 3 (lower is better) Translates to: IQPLFLIKKNMH*HPCSTCLVSDE Trigger: CTCATCAGAAACTAAACAGGTAGAACAAGGATGGCAATGCATATTCTTCTTAATTAAAAAGAGCGGTTGTAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR CAA 72 bp | AGTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTaGAAAGTGCTGCACTCGGAGTCTGTCCTCTACACC | + |
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Preference number: 4 (lower is better) Translates to: SQQAEAGKPGFY*KVLHSESVLYT Trigger: GGTGTAGAGGACAGACTCCGAGTGCAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR TCA 90 bp | TTTCAAGTTCCTGAGCTTCTCTTCTGCAGGCTGTGGTTTACAGGCCGGCCTCCTTTGAATACGCCATCCTaGTACAGCCCGTGCCGTATG | + |
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Preference number: 4 (lower is better) Translates to: FQVPELLFCRLWFTGRPPLNTPS*YSPCRM Trigger: CATACGGCACGGGCTGTATCAGGATGGCGTATTCAA...AGGAGGCCGGCCTGTAAACCACAGCCTGCAGAAGAGAAGCTCAGGAACTTGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR CCA 90 bp | CCTTCCAGAACATCATGCGTTGTTACAGAACTCAGCCACAGGCCCGGAGCCAGGTGCCATATATGGTTATaGTTCCGCCTCCACTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: PSRTSCVVTELSHRPGARCHIWL*FRLHFA Trigger: CGCAAAGTGGAGGCGGAACCATAACCATATATGGCA...CCTGGCTCCGGGCCTGTGGCTGAGTTCTGTAACAACGCATGATGTTCTGGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| 3UTR CAA 72 bp | CACAAAAGAAGACAGGTCCTTCCAGAACATCATGCGTaGTTACAGAACTCAGCCACAGGCCCGGAGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: HKRRQVLPEHHA*LQNSATGPEPG Trigger: ACCTGGCTCCGGGCCTGTGGCTGAGTTCTGTAACAACGCATGATGTTCTGGAAGGACCTGTCTTCTTTTGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR CCA 90 bp | ACAGCAAGTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTTGAAAGTGCTGTGCCATATATGGTTATaGTTCCGCCTCCACTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: TASQQAEAGKPGFYLKVLCHIWL*FRLHFA Trigger: CGCAAAGTGGAGGCGGAACCATAACCATATATGGCA...CAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACTTGCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR CCA 90 bp | TGCTCACTGTCATGCCTGAGGAGGATCTCTCTAAGTAGTCTCACTGTTTGTAGGAGGGGTCTTCTATCTTaGGCTGGTCAAAAAGACGGG | + |
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Preference number: 4 (lower is better) Translates to: CSLSCLRRISLSSLTVCRRGLLS*AGQKDG Trigger: CCCGTCTTTTTGACCAGCCCAAGATAGAAGACCCCT...CCTACAAACAGTGAGACTACTTAGAGAGATCCTCCTCAGGCATGACAGTGAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR TCA 90 bp | TCTGTCCTCTACACCCTTCTTCATGGCCTAACATATGTACAGCTGAAACTACCATTGAATACGCCATCCTaGTACAGCCCGTGCCGTATG | + |
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Preference number: 4 (lower is better) Translates to: SVLYTLLHGLTYVQLKLPLNTPS*YSPCRM Trigger: CATACGGCACGGGCTGTATCAGGATGGCGTATTCAA...TGGTAGTTTCAGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAGAGGACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR TCA 90 bp | CTCTACACCCTTCTTCATGGCCTAACATATGTACAGCTGAAACTACCAACTCCATTGAATACGCCATCCTaGTACAGCCCGTGCCGTATG | + |
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Preference number: 4 (lower is better) Translates to: LYTLLHGLTYVQLKLPTPLNTPS*YSPCRM Trigger: CATACGGCACGGGCTGTATCAGGATGGCGTATTCAA...TGGAGTTGGTAGTTTCAGCTGTACATATGTTAGGCCATGAAGAAGGGTGTAGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR GCA 90 bp | ACAGCAAGTCAGCAGGCTGAAGCTGGGAAGCCAGGCTTCTACTTGAAAGTGCTGTACCAGAGTAAATTCTaGAAGAAGCGAATATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: TASQQAEAGKPGFYLKVLYQSKF*KKRIFQ Trigger: CTGGAATATTCGCTTCTTGCAGAATTTACTCTGGTA...CAGCACTTTCAAGTAGAAGCCTGGCTTCCCAGCTTCAGCCTGCTGACTTGCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR CCA 90 bp | AAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAGCAGGGGTCTTCTATCTTaGGCTGGTCAAAAAGACGGG | + |
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Preference number: 4 (lower is better) Translates to: KHPGSAYVPNASEIDVYSRGLLS*AGQKDG Trigger: CCCGTCTTTTTGACCAGCCCAAGATAGAAGACCCCT...GCTGTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR CAA 72 bp | AGCCCACGTGGCCTAAAACTCTTGATCTTCCTGTTCTaGCCTACCATGCTGCTCAGCTTGGTCTATTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SPRGLKLLIFLF*PTMLLSLVYFF Trigger: AAAGAAATAGACCAAGCTGAGCAGCATGGTAGGCAAGAACAGGAAGATCAAGAGTTTTAGGCCACGTGGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR GCA 90 bp | AGTCAGCATTTCAAGTTCCTGAGCTTCTCTTCTGCAGGCTGTGGTTTACAGGCCTACCAGAGTAAATTCTaGAAGAAGCGAATATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SQHFKFLSFSSAGCGLQAYQSKF*KKRIFQ Trigger: CTGGAATATTCGCTTCTTGCAGAATTTACTCTGGTA...GGCCTGTAAACCACAGCCTGCAGAAGAGAAGCTCAGGAACTTGAAATGCTGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR GCA 90 bp | AAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAGCACTCCTGGCAGCTTCTaGTTCACTACCAGAGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: KHPGSAYVPNASEIDVYSTPGSF*FTTRVN Trigger: ATTTACTCTGGTAGTGAAGCAGAAGCTGCCAGGAGT...GCTGTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR GCA 90 bp | AAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAGCTACCAGAGTAAATTCTaGAAGAAGCGAATATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: KHPGSAYVPNASEIDVYSYQSKF*KKRIFQ Trigger: CTGGAATATTCGCTTCTTGCAGAATTTACTCTGGTA...GCTGTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR CCA 90 bp | TGGTACTCATTGTACTCATTACAGTCTCTCTGTTCTGTTAGTTTAAGTAAACACTGCCATATATGGTTATaGTTCCGCCTCCACTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: WYSLYSLQSLCSVSLSKHCHIWL*FRLHFA Trigger: CGCAAAGTGGAGGCGGAACCATAACCATATATGGCA...GTGTTTACTTAAACTAACAGAACAGAGAGACTGTAATGAGTACAATGAGTACCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR GCA 90 bp | TGGTACTCATTGTACTCATTACAGTCTCTCTGTTCTGTTAGTTTAAGTAAACACACTCCTGGCAGCTTCTaGTTCACTACCAGAGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: WYSLYSLQSLCSVSLSKHTPGSF*FTTRVN Trigger: ATTTACTCTGGTAGTGAAGCAGAAGCTGCCAGGAGT...GTGTTTACTTAAACTAACAGAACAGAGAGACTGTAATGAGTACAATGAGTACCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| 3UTR CAA 72 bp | CTTCAGATAATACACTTCCTCCTTAGATACGTGTTTTaGTTTTCTCCTTGGCCGTTCAGATCTAACAACTTC | + |
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Preference number: 4 (lower is better) Translates to: LQIIHFLLRYVF*FSPWPFRSNNF Trigger: GAAGTTGTTAGATCTGAACGGCCAAGGAGAAAACAAAAACACGTATCTAAGGAGGAAGTGTATTATCTGAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR CAA 90 bp | AAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACAGCGGTTCCGCCTCCACTTaGCGAACGCTCTTTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: KHPGSAYVPNASEIDVYSGSAST*RTLFSH Trigger: ATGTGAAAAGAGCGTTCGCAAAGTGGAGGCGGAACC...GCTGTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR CAA 90 bp | ATGAAGCATCCTGGTTCTGCCTACGTTCCTAATGCTTCTGAGATAGATGTTTACGGTTCCGCCTCCACTTaGCGAACGCTCTTTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: MKHPGSAYVPNASEIDVYGSAST*RTLFSH Trigger: ATGTGAAAAGAGCGTTCGCAAAGTGGAGGCGGAACC...GTAAACATCTATCTCAGAAGCATTAGGAACGTAGGCAGAACCAGGATGCTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS-3UTR CAA 90 bp | TCTTGCCTACCATGCTGCTCAGCTTGGTCTATTTCTTTGAACATCTTTTCTTGCGGTTCCGCCTCCACTTaGCGAACGCTCTTTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: SCLPCCSAWSISLNIFSCGSAST*RTLFSH Trigger: ATGTGAAAAGAGCGTTCGCAAAGTGGAGGCGGAACC...GCAAGAAAAGATGTTCAAAGAAATAGACCAAGCTGAGCAGCATGGTAGGCAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120426.9 |
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| CDS-3UTR CAA 90 bp | TGGTACTCATTGTACTCATTACAGTCTCTCTGTTCTGTTAGTTTAAGTAAACACGGTTCCGCCTCCACTTaGCGAACGCTCTTTTCACAT | + |
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Preference number: 5 (lower is better) Translates to: WYSLYSLQSLCSVSLSKHGSAST*RTLFSH Trigger: ATGTGAAAAGAGCGTTCGCAAAGTGGAGGCGGAACC...GTGTTTACTTAAACTAACAGAACAGAGAGACTGTAATGAGTACAATGAGTACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000120213.9 ENSMUST00000120349.8 ENSMUST00000125257.3 |
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| CDS CCA 72 bp | ACCTTCAGCTCGCTGGATGCCCTCGGTGCGGAGCGCTaGGGGCCGAGCGCCACCGCGGGCCAACAGCATCTC | + |
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Preference number: 6 (lower is better) Translates to: TFSSLDALGAER*GPSATAGQQHL Trigger: GAGATGCTGTTGGCCCGCGGTGGCGCTCGGCCCCCAGCGCTCCGCACCGAGGGCATCCAGCGAGCTGAAGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211050.2 |
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| CDS GCA 72 bp | TCTTCTCTTCACCTTCAGCTCGCTGGATGCCCTCGGTaGGGAGCGCTGGGGGCCGAGCGCCACCGCGGGCCA | + |
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Preference number: 6 (lower is better) Translates to: SSLHLQLAGCPR*GALGAERHRGP Trigger: TGGCCCGCGGTGGCGCTCGGCCCCCAGCGCTCCGCACCGAGGGCATCCAGCGAGCTGAAGGTGAAGAGAAGA 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211050.2 |
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