Pregenerated sensors for AKR1D1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038641Ensembl transcript IDs: ENSMUST00000040987.11
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CACACTGGATGGAAACAAATGATAAAAACAGACTCAGCATGGCTTTaGCGATTGCCCTCATCCCCACCTCCCTCACCCTGGGCCTCCAGC | + |
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Preference number: 1 (lower is better) Translates to: HTGWKQMIKTDSAWL*RLPSSPPPSPWASS Trigger: GCTGGAGGCCCAGGGTGAGGGAGGTGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCTGTTTTTATCATTTGTTTCCATCCAGTGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 90 bp | AATGGGCACACTGGATGGAAACAAATGATAAAAACAGACTCAGCATaGCTTTGCCGATTGCCCTCATCCCCACCTCCCTCACCCTGGGCC | + |
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Preference number: 1 (lower is better) Translates to: NGHTGWKQMIKTDSA*LCRLPSSPPPSPWA Trigger: GGCCCAGGGTGAGGGAGGTGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCTGTTTTTATCATTTGTTTCCATCCAGTGTGCCCATT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR GCA 90 bp | ATCATTTGGGGGCTGGAAAGATGCTCAGCGGTTAAGAGCACAGGCTaGTCTTCCAAACTTCCTGAGTTCAAATCCCAGCAACCACGTGGT | + |
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Preference number: 1 (lower is better) Translates to: IIWGLERCSAVKSTG*SSKLPEFKSQQPRG Trigger: ACCACGTGGTTGCTGGGATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATCTTTCCAGCCCCCAAATGAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 90 bp | ACCATCTTGCAACTAATGGTCCAAACATTTGGTAGGTCATGGTCATaGTCAGCACCAGGAACTGTGCCAACTGCAAACCTCTTTGTCCTG | + |
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Preference number: 1 (lower is better) Translates to: TILQLMVQTFGRSWS*SAPGTVPTANLFVL Trigger: CAGGACAAAGAGGTTTGCAGTTGGCACAGTTCCTGGTGCTGACCATGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 90 bp | GCTGTGACCATCTTGCAACTAATGGTCCAAACATTTGGTAGGTCATaGTCATGGTCAGCACCAGGAACTGTGCCAACTGCAAACCTCTTT | + |
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Preference number: 1 (lower is better) Translates to: AVTILQLMVQTFGRS*SWSAPGTVPTANLF Trigger: AAAGAGGTTTGCAGTTGGCACAGTTCCTGGTGCTGACCATGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGTCACAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 90 bp | GACTTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTaGATTTCTGCCTTGGCTGTGACCATCTTGCAACTAATGGTCCAA | + |
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Preference number: 1 (lower is better) Translates to: DFQFYLYSRCIRNGM*ISALAVTILQLMVQ Trigger: TTGGACCATTAGTTGCAAGATGGTCACAGCCAAGGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAAGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR GCA 90 bp | TTCTTTAGGACTCTTCAAGACTTCCAGTTCTATCTCTACTCAAGGTaGATTAGGAATGGCATGTGGATTTCTGCCTTGGCTGTGACCATC | + |
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Preference number: 1 (lower is better) Translates to: FFRTLQDFQFYLYSR*IRNGMWISALAVTI Trigger: GATGGTCACAGCCAAGGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAAGTCTTGAAGAGTCCTAAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR GCA 90 bp | GATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCAAATGACTCAGCATGGCTTTaGCGATTGCCCTCATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: DAQRLRAQAALPNFLSSNDSAWL*RLPSSP Trigger: TGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTC...ATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAAGACCAGGACGCACATGAAAGGCTaGATGGGCACACTGGATGGA | + |
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Preference number: 2 (lower is better) Translates to: GLTSHMKAQGIKNGRKTRTHMKG*MGTLDG Trigger: TCCATCCAGTGTGCCCATTCAGCCTTTCATGTGCGT...CCTGGTCTTTCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR TCA 90 bp | GGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAAGACCAGGCTGCCCATCTTAATCTaGAGAGAGCAAGACCCCATT | + |
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Preference number: 2 (lower is better) Translates to: GLTSHMKAQGIKNGRKTRLPILI*REQDPI Trigger: AATGGGGTCTTGCTCTCTTCAGATTAAGATGGGCAG...CCTGGTCTTTCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CAA 90 bp | TGCATTAGGAATGGCATGTGGATTTCTGCCTTGGCTGTGACCATCTaGCAACTAATGGTCCAAACATTTGGTAGGTCATGGTCATGGTCA | + |
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Preference number: 2 (lower is better) Translates to: CIRNGMWISALAVTI*QLMVQTFGRSWSWS Trigger: TGACCATGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGTCACAGCCAAGGCAGAAATCCACATGCCATTCCTAATGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR GCA 90 bp | GATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCAAATTATCTCTACTCAAGGTaGATTAGGAATGGCATGTGG | + |
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Preference number: 2 (lower is better) Translates to: DAQRLRAQAALPNFLSSNYLYSR*IRNGMW Trigger: CCACATGCCATTCCTAATGCACCTTGAGTAGAGATA...ATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR CCA 90 bp | GGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAAGACCAGGGCTGAATGGGCACACTaGATGGAAACAAATGATAAA | + |
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Preference number: 2 (lower is better) Translates to: GLTSHMKAQGIKNGRKTRAEWAH*METNDK Trigger: TTTATCATTTGTTTCCATCCAGTGTGCCCATTCAGC...CCTGGTCTTTCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR CCA 90 bp | TTGGCTGTGACCATCTTGCAACTAATGGTCCAAACATTTGGTAGGTCATGGTCACCATTTATCTACATCTaGAGTGGATTAATCAGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LAVTILQLMVQTFGRSWSPFIYI*SGLISL Trigger: TAAGCTGATTAATCCACTCCAGATGTAGATAAATGG...TGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGTCACAGCCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR CCA 90 bp | GTACAAGTAGGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAATGGGCACACTGGATaGAAACAAATGATAAAAACA | + |
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Preference number: 2 (lower is better) Translates to: VQVGLTSHMKAQGIKNGRNGHTG*KQMIKT Trigger: TGTTTTTATCATTTGTTTCCATCCAGTGTGCCCATT...TCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCCTACTTGTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CAA 90 bp | TCAGACGATTTTATGGTACAAAGCTTGATTTGTATATCTTGTTTCTaGCCACTTTACATGGTGGTTTTCTTGATGAGTGCAGGCAAGAAT | + |
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Preference number: 2 (lower is better) Translates to: SDDFMVQSLICISCF*PLYMVVFLMSAGKN Trigger: ATTCTTGCCTGCACTCATCAAGAAAACCACCATGTAAAGTGGCAAGAAACAAGATATACAAATCAAGCTTTGTACCATAAAATCGTCTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR CAA 90 bp | GATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCAAATAGACTCAGCATGGCTTaGCCGATTGCCCTCATCCCC | + |
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Preference number: 3 (lower is better) Translates to: DAQRLRAQAALPNFLSSNRLSMA*PIALIP Trigger: GGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCT...ATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR GCA 72 bp | GGGCTGGAAAGATGCTCAGCGGTTAAGAGCACAGGCTaGTCTTCCAAACTTCCTGAGTTCAAATCCCAGCAA | + |
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Preference number: 3 (lower is better) Translates to: GLERCSAVKSTG*SSKLPEFKSQQ Trigger: TTGCTGGGATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATCTTTCCAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR TCA 72 bp | GAATTCAAGACTGGCCTCAACTGCACAGCAGGTTTGTaGGCAGTCTGGACTACACAAGACCCTGTCTCAACT | + |
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Preference number: 3 (lower is better) Translates to: EFKTGLNCTAGL*AVWTTQDPVST Trigger: AGTTGAGACAGGGTCTTGTGTAGTCCAGACTGCTCACAAACCTGCTGTGCAGTTGAGGCCAGTCTTGAATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 72 bp | CAACTAATGGTCCAAACATTTGGTAGGTCATGGTCATaGTCAGCACCAGGAACTGTGCCAACTGCAAACCTC | + |
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Preference number: 3 (lower is better) Translates to: QLMVQTFGRSWS*SAPGTVPTANL Trigger: GAGGTTTGCAGTTGGCACAGTTCCTGGTGCTGACCATGACCATGACCTACCAAATGTTTGGACCATTAGTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 72 bp | AAATGGGAGAAAGACCAGGGATTCAGAATTCAAGACTaGCCTCAACTGCACAGCAGGTTTGTGAGCAGTCTG | + |
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Preference number: 3 (lower is better) Translates to: KWEKDQGFRIQD*PQLHSRFVSSL Trigger: CAGACTGCTCACAAACCTGCTGTGCAGTTGAGGCCAGTCTTGAATTCTGAATCCCTGGTCTTTCTCCCATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CCA 72 bp | ATCTTGCAACTAATGGTCCAAACATTTGGTAGGTCATaGTCATGGTCAGCACCAGGAACTGTGCCAACTGCA | + |
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Preference number: 3 (lower is better) Translates to: ILQLMVQTFGRS*SWSAPGTVPTA Trigger: TGCAGTTGGCACAGTTCCTGGTGCTGACCATGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR GCA 72 bp | ACTCTTCAAGACTTCCAGTTCTATCTCTACTCAAGGTaGATTAGGAATGGCATGTGGATTTCTGCCTTGGCT | + |
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Preference number: 3 (lower is better) Translates to: TLQDFQFYLYSR*IRNGMWISALA Trigger: AGCCAAGGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAAGTCTTGAAGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR-3UTR CAA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCATTAGTCTCAGATTCTaGGACCTGCTTTTACATGCT | + |
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Preference number: 3 (lower is better) Translates to: FQFYLYSRCIRNGMWISAISLRF*DLLLHA Trigger: AGCATGTAAAAGCAGGTCCAAGAATCTGAGACTAAT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR TCA 72 bp | TCTCAGATTCTTGGACCTGCTTTTACATGCTACTTTTaGGTAAAGTTTAGTGATTTCCATGAACAGTCTAGA | + |
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Preference number: 3 (lower is better) Translates to: SQILGPAFTCYF*VKFSDFHEQSR Trigger: TCTAGACTGTTCATGGAAATCACTAAACTTTACTCAAAAGTAGCATGTAAAAGCAGGTCCAAGAATCTGAGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR TCA 72 bp | AAAGATGAATCTTCTTTTCTCTTCATCAGAGCTAGCTaGGTTAATACTACACAAAAGTTAAGCATGGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: KDESSFLFIRAS*VNTTQKLSMVC Trigger: ACACACCATGCTTAACTTTTGTGTAGTATTAACTCAGCTAGCTCTGATGAAGAGAAAAGAAGATTCATCTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR TCA 72 bp | AATCACCATCTTCAGACGATTTTATGGTACAAAGCTTaGTTTGTATATCTTGTTTCTTGCCACTTTACATGG | + |
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Preference number: 3 (lower is better) Translates to: NHHLQTILWYKA*FVYLVSCHFTW Trigger: CCATGTAAAGTGGCAAGAAACAAGATATACAAATCAAGCTTTGTACCATAAAATCGTCTGAAGATGGTGATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | AAAGATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCATGGGTGAAATACGGGTaGCACTCCACCTGGTTAGTG | + |
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Preference number: 4 (lower is better) Translates to: KDAQRLRAQAALPNFLSSWVKYG*HSTWLV Trigger: CACTAACCAGGTGGAGTGCCACCCGTATTTCACCCA...TGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | GGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAAGACCAGGCTGCTATCTTTTCTCTaGTGGCCTCACCGACTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GLTSHMKAQGIKNGRKTRLLSFL*WPHRLH Trigger: ATGAAGTCGGTGAGGCCATCAGAGAAAAGATAGCAG...CCTGGTCTTTCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR GCA 90 bp | ATAAAAACAGACTCAGCATGGCTTTGCCGATTGCCCTCATCCCCACCTCCCTCACTTTACCTTCCCTTCTaGTATCTTTTCTCTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: IKTDSAWLCRLPSSPPPSLYLPF*YLFSDG Trigger: GCCATCAGAGAAAAGATAGCAGAAGGGAAGGTAAAG...TGAGGGAGGTGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCTGTTTTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR GCA 90 bp | ATAAAAACAGACTCAGCATGGCTTTGCCGATTGCCCTCATCCCCACCTCCCTCAATGACGATGTCATGCTaGTGGCAGAATTTCAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: IKTDSAWLCRLPSSPPPSMTMSC*WQNFKS Trigger: ACTCTTGAAATTCTGCCAGCAGCATGACATCGTCAT...TGAGGGAGGTGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCTGTTTTTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCAGAGTTTTGTCTGGGTaGAATACGGGTGGCACTCCA | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISARVLSG*NTGGTP Trigger: TGGAGTGCCACCCGTATTTCACCCAGACAAAACTCT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | CTCTTCAAGACTTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGGTGGCACTCCACCTaGTTAGTGACTGGTTTGTAC | + |
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Preference number: 4 (lower is better) Translates to: LFKTSSSISTQGALGMACGWHST*LVTGLY Trigger: GTACAAACCAGTCACTAACCAGGTGGAGTGCCACCC...ACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAAGTCTTGAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | ATAAAAACAGACTCAGCATGGCTTTGCCGATTGCCCTCATCCCCACCTCCCTCAACGATGTCATGCTGCTaGCAGAATTTCAAGAGTTTT | + |
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Preference number: 4 (lower is better) Translates to: IKTDSAWLCRLPSSPPPSTMSCC*QNFKSF Trigger: AAAACTCTTGAAATTCTGCCAGCAGCATGACATCGT...TGAGGGAGGTGGGGATGAGGGCAATCGGCAAAGCCATGCTGAGTCTGTTTTTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | GATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCAAATAATGGGTATTCAGGATaGTCACTCCACATGAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: DAQRLRAQAALPNFLSSNNGYSG*SLHMSN Trigger: GTTGCTCATGTGGAGTGACCATCCTGAATACCCATT...ATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCAGGTTCCAAGCCCAATaGGTGGAATGTTGTTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISARFQAQ*VECCSH Trigger: ATGGGAACAACATTCCACTCATTGGGCTTGGAACCT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCTCCCTCGCTGGATGTTaGAACGCAACACAATTTGAG | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISASLAGC*NATQFE Trigger: CTCAAATTGTGTTGCGTTTCAACATCCAGCGAGGGA...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR GCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCAATAGCTGTCTTCACTaGCACATAGGTCTTCCCAGG | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISANSCLH*HIGLPR Trigger: CCTGGGAAGACCTATGTGGCAGTGAAGACAGCTATT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CAA 72 bp | AATGGCATGTGGATTTCTGCCTTGGCTGTGACCATCTaGCAACTAATGGTCCAAACATTTGGTAGGTCATGG | + |
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Preference number: 4 (lower is better) Translates to: NGMWISALAVTI*QLMVQTFGRSW Trigger: CCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGTCACAGCCAAGGCAGAAATCCACATGCCATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | TTGGCTGTGACCATCTTGCAACTAATGGTCCAAACATTTGGTAGGTCATGGTCATTCAAGAGTTTTGTCTaGGTGAAATACGGGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: LAVTILQLMVQTFGRSWSFKSFV*VKYGWH Trigger: GTGCCACCCGTATTTCACCCAGACAAAACTCTTGAA...TGACCATGACCTACCAAATGTTTGGACCATTAGTTGCAAGATGGTCACAGCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR GCA 90 bp | GGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAAAGACCAGGACCATTGATGGGACATaGTCTGTATTCCATAACTTT | + |
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Preference number: 4 (lower is better) Translates to: GLTSHMKAQGIKNGRKTRTIDGT*SVFHNF Trigger: AAAGTTATGGAATACAGAGCATGTCCCATCAATGGT...CCTGGTCTTTCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR GCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCACAATGACGATGTCATaGTGCTGGCAGAATTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISATMTMS*CWQNFK Trigger: CTTGAAATTCTGCCAGCAGCATGACATCGTCATTGT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCGTATTCGTCATGAAATaGGTATTCAGGATGGTCACT | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISAVFVMK*VFRMVT Trigger: AGTGACCATCCTGAATACCCATTTCATGACGAATAC...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | TTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTGGATTTCTGCCAAACGCAACACAATTTaGGCTTGTGTCTTATTGTAC | + |
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Preference number: 4 (lower is better) Translates to: FQFYLYSRCIRNGMWISAKRNTI*ACVLLY Trigger: GTACAATAAGACACAAGCTCAAATTGTGTTGCGTTT...GGCAGAAATCCACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR TCA 90 bp | CTCTTCAAGACTTCCAGTTCTATCTCTACTCAAGGTGCATTAGGAATGGCATGTTCATTTCTTCTTCCGTaGGAGAAAAGTCAAAGATCT | + |
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Preference number: 4 (lower is better) Translates to: LFKTSSSISTQGALGMACSFLLP*EKSQRS Trigger: AGATCTTTGACTTTTCTCTCACGGAAGAAGAAATGA...ACATGCCATTCCTAATGCACCTTGAGTAGAGATAGAACTGGAAGTCTTGAAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| 3UTR CAA 72 bp | ATATCTTGTTTCTTGCCACTTTACATGGTGGTTTTCTaGATGAGTGCAGGCAAGAATGATTATAACATAGTA | + |
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Preference number: 4 (lower is better) Translates to: ISCFLPLYMVVF*MSAGKNDYNIV Trigger: TACTATGTTATAATCATTCTTGCCTGCACTCATCAAGAAAACCACCATGTAAAGTGGCAAGAAACAAGATAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS GCA 90 bp | CGGCAGGTCCCTAAGGGGCTATGTGCGACAATGACGATGTCATGCTaGTGGCAGAATTTCAAGAGTTTTGTCTGGGTGAAATACGGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RQVPKGLCATMTMSC*WQNFKSFVWVKYGW Trigger: CCACCCGTATTTCACCCAGACAAAACTCTTGAAATTCTGCCAGCAGCATGACATCGTCATTGTCGCACATAGCCCCTTAGGGACCTGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS CCA 90 bp | CAGGTCCCTAAGGGGCTATGTGCGACAATGACGATGTCATGCTGCTaGCAGAATTTCAAGAGTTTTGTCTGGGTGAAATACGGGTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: QVPKGLCATMTMSCC*QNFKSFVWVKYGWH Trigger: GTGCCACCCGTATTTCACCCAGACAAAACTCTTGAAATTCTGCCAGCAGCATGACATCGTCATTGTCGCACATAGCCCCTTAGGGACCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CAA 90 bp | GTACAAGTAGGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAGGGCTGGGAGGACCATaGATGGGACATGCTCTGTAT | + |
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Preference number: 5 (lower is better) Translates to: VQVGLTSHMKAQGIKNGRGLGGP*MGHALY Trigger: ATACAGAGCATGTCCCATCAATGGTCCTCCCAGCCC...TCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCCTACTTGTAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CAA 90 bp | GATGCTCAGCGGTTAAGAGCACAGGCTGCTCTTCCAAACTTCCTGAGTTCAAATGAAACGCAACACAATTaGAGCTTGTGTCTTATTGTA | + |
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Preference number: 5 (lower is better) Translates to: DAQRLRAQAALPNFLSSNETQHN*SLCLIV Trigger: TACAATAAGACACAAGCTCAAATTGTGTTGCGTTTC...ATTTGAACTCAGGAAGTTTGGAAGAGCAGCCTGTGCTCTTAACCGCTGAGCATC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS-3UTR CAA 90 bp | GTACAAGTAGGGCTTACCAGTCACATGAAAGCTCAGGGCATTAAAAATGGGAGAGCACACAGATTTGTTTaGTCATATATAATTCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: VQVGLTSHMKAQGIKNGRAHRFV*SYIIRP Trigger: TGGCCGAATTATATATGACAAAACAAATCTGTGTGC...TCTCCCATTTTTAATGCCCTGAGCTTTCATGTGACTGGTAAGCCCTACTTGTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS CAA 72 bp | AACAAGGGTGGAGAAGAGACGTTCACCCATGATGGGTaGCGGCAGGTCCCTAAGGGGCTATGTGCGACAATG | + |
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Preference number: 6 (lower is better) Translates to: NKGGEETFTHDG*RQVPKGLCATM Trigger: CATTGTCGCACATAGCCCCTTAGGGACCTGCCGCAACCCATCATGGGTGAACGTCTCTTCTCCACCCTTGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS GCA 72 bp | AATGTGCCGGTACCCCTCATCAATAGCTGTCTTCACTaGCACATAGGTCTTCCCAGGGACCGGTCTAGGATC | + |
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Preference number: 6 (lower is better) Translates to: NVPVPLINSCLH*HIGLPRDRSRI Trigger: GATCCTAGACCGGTCCCTGGGAAGACCTATGTGGCAGTGAAGACAGCTATTGATGAGGGGTACCGGCACATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS TCA 72 bp | GGTTGCGGCAGGTCCCTAAGGGGCTATGTGCGACAATaGCGATGTCATGCTGCTGGCAGAATTTCAAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: GCGRSLRGYVRQ*RCHAAGRISRV Trigger: AACTCTTGAAATTCTGCCAGCAGCATGACATCGTCATTGTCGCACATAGCCCCTTAGGGACCTGCCGCAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS CAA 90 bp | TCGTCATTTAACAAGGGTGGAGAAGAGACGTTCACCCATGATGGGTaGCGGCAGGTCCCTAAGGGGCTATGTGCGACAATGACGATGTCA | + |
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Preference number: 6 (lower is better) Translates to: SSFNKGGEETFTHDG*RQVPKGLCATMTMS Trigger: TGACATCGTCATTGTCGCACATAGCCCCTTAGGGACCTGCCGCAACCCATCATGGGTGAACGTCTCTTCTCCACCCTTGTTAAATGACGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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| CDS GCA 72 bp | CCTAAGGGGCTATGTGCGACAATGACGATGTCATGCTaGTGGCAGAATTTCAAGAGTTTTGTCTGGGTGAAA | + |
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Preference number: 6 (lower is better) Translates to: PKGLCATMTMSC*WQNFKSFVWVK Trigger: TTTCACCCAGACAAAACTCTTGAAATTCTGCCAGCAGCATGACATCGTCATTGTCGCACATAGCCCCTTAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040987.11 |
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