Pregenerated sensors for AKR1C21 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021207Ensembl transcript IDs: ENSMUST00000021628.4, ENSMUST00000223285.2
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATAAGGATGGCATTCTACAGGTTCAGAGGTTCAGTCCATTATCATaGAGGTGGGAACATGGCAGCATCCAGGCAGGCTTAGTGCAGGAG | + |
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Preference number: 1 (lower is better) Translates to: DKDGILQVQRFSPLS*RWEHGSIQAGLVQE Trigger: CTCCTGCACTAAGCCTGCCTGGATGCTGCCATGTTCCCACCTTCATGATAATGGACTGAACCTCTGAACCTGTAGAATGCCATCCTTATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR CCA 90 bp | TATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTaGCAAGTCTGTAGATGGCAGCAGCTGAGCAGTGTCCCACCCATA | + |
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Preference number: 1 (lower is better) Translates to: YLFVIFKKFSIATEK*QVCRWQQLSSVPPI Trigger: TATGGGTGGGACACTGCTCAGCTGCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| 3UTR-3UTR CCA 90 bp | AGATGGCAGCAGCTGAGCAGTGTCCCACCCATAGGCTTTTCAGGAGACATCCTCAATGGCCAATTAGGGTaGCCCTTGAAAATGGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: RWQQLSSVPPIGFSGDILNGQLG*PLKMAA Trigger: TGCTGCCATTTTCAAGGGCCACCCTAATTGGCCATT...GAGGATGTCTCCTGAAAAGCCTATGGGTGGGACACTGCTCAGCTGCTGCCATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR-3UTR CCA 90 bp | ATGGCAGCAGGTATGTATCGCATATTTCTGTTCAGGCCATCAAGAACTTTCATAATTGCTACAGAGAAGTaGCAAGTCTGTAGATGGCAG | + |
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Preference number: 2 (lower is better) Translates to: MAAGMYRIFLFRPSRTFIIATEK*QVCRWQ Trigger: CTGCCATCTACAGACTTGCCACTTCTCTGTAGCAAT...TATGAAAGTTCTTGATGGCCTGAACAGAAATATGCGATACATACCTGCTGCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR-3UTR TCA 90 bp | ATGGCAGCAGGTATGTATCGCATATTTCTGTTCAGGCCATCAAGAACTTTCATAGAAGTTTCATTTGGTTaGGATAAGGATGGCATTCTA | + |
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Preference number: 2 (lower is better) Translates to: MAAGMYRIFLFRPSRTFIEVSFG*DKDGIL Trigger: TAGAATGCCATCCTTATCTCAACCAAATGAAACTTC...TATGAAAGTTCTTGATGGCCTGAACAGAAATATGCGATACATACCTGCTGCCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR CCA 72 bp | TCAGAGGTTCAGTCCATTATCATGAAGGTGGGAACATaGCAGCATCCAGGCAGGCTTAGTGCAGGAGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: SEVQSIIMKVGT*QHPGRLSAGAE Trigger: CTCAGCTCCTGCACTAAGCCTGCCTGGATGCTGCCATGTTCCCACCTTCATGATAATGGACTGAACCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR TCA 72 bp | GGCATTCTACAGGTTCAGAGGTTCAGTCCATTATCATaGAGGTGGGAACATGGCAGCATCCAGGCAGGCTTA | + |
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Preference number: 3 (lower is better) Translates to: GILQVQRFSPLS*RWEHGSIQAGL Trigger: TAAGCCTGCCTGGATGCTGCCATGTTCCCACCTTCATGATAATGGACTGAACCTCTGAACCTGTAGAATGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| 3UTR CCA 72 bp | TTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATaGCAGCAGCTGAGCAGTGTCCCACCCATAGGCTTT | + |
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Preference number: 3 (lower is better) Translates to: FSIATEKWQVCR*QQLSSVPPIGF Trigger: AAAGCCTATGGGTGGGACACTGCTCAGCTGCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| 3UTR CCA 72 bp | CCAAGAACTGGTTCATCCAAGAGAACAGGGGAATTCTaGTCTACCCATCCTCCATATCGTTGTGTTCCTAGA | + |
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Preference number: 3 (lower is better) Translates to: PRTGSSKRTGEF*STHPPYRCVPR Trigger: TCTAGGAACACAACGATATGGAGGATGGGTAGACCAGAATTCCCCTGTTCTCTTGGATGAACCAGTTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | AGATGGCAGCAGCTGAGCAGTGTCCCACCCATAGGCTTTTCAGGAGACATCCTCTGGTTTCAGGGCCATTaGGTAATGAATGAGATACAG | + |
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Preference number: 4 (lower is better) Translates to: RWQQLSSVPPIGFSGDILWFQGH*VMNEIQ Trigger: CTGTATCTCATTCATTACCCAATGGCCCTGAAACCA...GAGGATGTCTCCTGAAAAGCCTATGGGTGGGACACTGCTCAGCTGCTGCCATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR TCA 90 bp | TGTAGATGGCAGCAGCTGAGCAGTGTCCCACCCATAGGCTTTTCAGGAGACATCAACCCAGCACTGGAATaGAGTTACCATCATTCAATA | + |
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Preference number: 4 (lower is better) Translates to: CRWQQLSSVPPIGFSGDINPALE*SYHHSI Trigger: TATTGAATGATGGTAACTTCATTCCAGTGCTGGGTT...GATGTCTCCTGAAAAGCCTATGGGTGGGACACTGCTCAGCTGCTGCCATCTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | ATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGCCTTACACTTCTCCATaGCCTCCCAGGTGGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: IFKKFSIATEKWQVCRWQPYTSP*PPRWHR Trigger: TCTGTGCCACCTGGGAGGCCATGGAGAAGTGTAAGG...CTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | CTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTCCATGGCCTCCCAGGTaGCACAGAGGTCCACTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LFVIFKKFSIATEKWQVCPWPPR*HRGPLC Trigger: ACAGAGTGGACCTCTGTGCCACCTGGGAGGCCATGG...ACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | GTTCAGTCCATTATCATGAAGGTGGGAACATGGCAGCATCCAGGCAGGCTTAGTACCAAAACCCAGCACTaGAATGAAGTTACCATCATT | + |
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Preference number: 4 (lower is better) Translates to: VQSIIMKVGTWQHPGRLSTKTQH*NEVTII Trigger: AATGATGGTAACTTCATTCCAGTGCTGGGTTTTGGT...ACTAAGCCTGCCTGGATGCTGCCATGTTCCCACCTTCATGATAATGGACTGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTACCATGGCCTCCCAGGTaGCACAGAGGTCCACTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVPWPPR*HRGPLC Trigger: ACAGAGTGGACCTCTGTGCCACCTGGGAGGCCATGG...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGCAGCATGGAACCAAGAACTaGTTCATCCAAGAGAACAGG | + |
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Preference number: 4 (lower is better) Translates to: FKKFSIATEKWQVCRWQQHGTKN*FIQENR Trigger: CCTGTTCTCTTGGATGAACCAGTTCTTGGTTCCATG...CTGCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAA 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR TCA 90 bp | TTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGCAGCCATTGGGTAATGAATaGGATACAGGTCCACATAGT | + |
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Preference number: 4 (lower is better) Translates to: FKKFSIATEKWQVCRWQQPLGNE*DTGPHS Trigger: ACTATGTGGACCTGTATCTCATTCATTACCCAATGG...CTGCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCCCTTACACTTCTCCATaGCCTCCCAGGTGGCACAGA | + |
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Preference number: 4 (lower is better) Translates to: YLFVIFKKFSIATEKWQVPYTSP*PPRWHR Trigger: TCTGTGCCACCTGGGAGGCCATGGAGAAGTGTAAGG...GACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR TCA 90 bp | TTCAAAAACCTGCATGTTCTCTTTGATCCGCTCCTCTTTGAGACTGGTGTTGAGAACCCAGCACTGGAATaGAGTTACCATCATTCAATA | + |
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Preference number: 4 (lower is better) Translates to: FKNLHVLFDPLLFETGVENPALE*SYHHSI Trigger: TATTGAATGATGGTAACTTCATTCCAGTGCTGGGTT...CTCAACACCAGTCTCAAAGAGGAGCGGATCAAAGAGAACATGCAGGTTTTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| CDS-3UTR TCA 90 bp | TTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGCAGGAAGCAGAATCAAAGTaGTGGAAACCAGCATCTATA | + |
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Preference number: 4 (lower is better) Translates to: FKKFSIATEKWQVCRWQQEAESK*WKPASI Trigger: TATAGATGCTGGTTTCCATCACTTTGATTCTGCTTC...CTGCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR TCA 90 bp | ATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGGAAGCAGAATCAAAGTaGTGGAAACCAGCATCTATA | + |
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Preference number: 4 (lower is better) Translates to: IFKKFSIATEKWQVCRWQEAESK*WKPASI Trigger: TATAGATGCTGGTTTCCATCACTTTGATTCTGCTTC...CTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | ATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGACCAAAACCCAGCACTaGAATGAAGTTACCATCATT | + |
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Preference number: 4 (lower is better) Translates to: IFKKFSIATEKWQVCRWQTKTQH*NEVTII Trigger: AATGATGGTAACTTCATTCCAGTGCTGGGTTTTGGT...CTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR TCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTACAGCAATCTTGCTTCTaGTGGCCTCTCCTACATGAT | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVQQSCF*WPLLHD Trigger: ATCATGTAGGAGAGGCCATCAGAAGCAAGATTGCTG...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAAGCTCTCACAAGTTCTaGGTGAAGGCTAGTACACCA | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVSSHKF*VKASTP Trigger: TGGTGTACTAGCCTTCACCCAGAACTTGTGAGAGCT...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | GATATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGAGCTCTCACAAGTTCTaGGTGAAGGCTAGTACACCA | + |
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Preference number: 4 (lower is better) Translates to: DIFLLSSRSSQLLQRSGKSSHKF*VKASTP Trigger: TGGTGTACTAGCCTTCACCCAGAACTTGTGAGAGCT...CTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAAAATTTTCTTCTCCTaGTTTCAGGGCCATTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: LSSRSSQLLQRSGKSVDGKIFFS*FQGHWV Trigger: TACCCAATGGCCCTGAAACCAGGAGAAGAAAATTTT...GCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | GTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGAAAATTTTCTTCTCCTaGTTTCAGGGCCATTGGGTA | + |
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Preference number: 4 (lower is better) Translates to: VIFKKFSIATEKWQVCRWKIFFS*FQGHWV Trigger: TACCCAATGGCCCTGAAACCAGGAGAAGAAAATTTT...CCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAAATGGCCAATTAGGGTaGCCCTTGAAAATGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVNGQLG*PLKMAA Trigger: TGCTGCCATTTTCAAGGGCCACCCTAATTGGCCATT...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR TCA 90 bp | TTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCGAAGTTTCATTTGGTTaGGATAAGGATGGCATTCTA | + |
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Preference number: 4 (lower is better) Translates to: LSSRSSQLLQRSGKSVDGEVSFG*DKDGIL Trigger: TAGAATGCCATCCTTATCTCAACCAAATGAAACTTC...GCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR TCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTACCATTGGGTAATGAATaGGATACAGGTCCACATAGT | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVPLGNE*DTGPHS Trigger: ACTATGTGGACCTGTATCTCATTCATTACCCAATGG...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | GATATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGGTATTCATCCAAAAATaGCCAATTAGGGTGGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: DIFLLSSRSSQLLQRSGKVFIQK*PIRVAL Trigger: AAGGGCCACCCTAATTGGCCATTTTTGGATGAATAC...CTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| 3UTR CAA 72 bp | TATGATATCTTTTTGTTATCTTCAAGAAGTTCTCAATaGCTACAGAGAAGTGGCAAGTCTGTAGATGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: YDIFLLSSRSSQ*LQRSGKSVDGS Trigger: GCTGCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATATCATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | CTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTTCCATGTTCATCTACTaGAAAATTTTCTTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: LFVIFKKFSIATEKWQVCSMFIY*KIFFSW Trigger: CCAGGAGAAGAAAATTTTCCAGTAGATGAACATGGA...ACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CCA 90 bp | TTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTATCCATGTTCATCTACTaGAAAATTTTCTTCTCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FLLSSRSSQLLQRSGKSVSMFIY*KIFFSW Trigger: CCAGGAGAAGAAAATTTTCCAGTAGATGAACATGGA...TACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CAA 90 bp | GTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGTCCTTAGCTTTACTCTaGGGACACTCTAGAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: VIFKKFSIATEKWQVCRWSLALL*GHSRGR Trigger: TCTTCCTCTAGAGTGTCCCAAGAGTAAAGCTAAGGA...CCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CAA 90 bp | CTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTTGGCATTCTACCTGGTaGCATACCGGCTTGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: LFVIFKKFSIATEKWQVCWHSTW*HTGLYL Trigger: CAAGTACAAGCCGGTATGCAACCAGGTAGAATGCCA...ACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR CAA 90 bp | TATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCCAATTAGGGTGGCCCTaGAAAATGGCAGCAGGTATG | + |
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Preference number: 5 (lower is better) Translates to: YLFVIFKKFSIATEKWQVQLGWP*KMAAGM Trigger: CATACCTGCTGCCATTTTCAAGGGCCACCCTAATTG...GACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR CAA 90 bp | TTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCGCATCTATAGCTATTTaGGTGAGCTCCTTAGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: LSSRSSQLLQRSGKSVDGASIAI*VSSLAL Trigger: TAAAGCTAAGGAGCTCACCAAAATAGCTATAGATGC...GCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS-3UTR CAA 90 bp | ATGGCAGCAGGTATGTATCGCATATTTCTGTTCAGGCCATCAAGAACTTTCATAGCATCTATAGCTATTTaGGTGAGCTCCTTAGCTTTA | + |
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Preference number: 5 (lower is better) Translates to: MAAGMYRIFLFRPSRTFIASIAI*VSSLAL Trigger: TAAAGCTAAGGAGCTCACCAAAATAGCTATAGATGC...TATGAAAGTTCTTGATGGCCTGAACAGAAATATGCGATACATACCTGCTGCCAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000223285.2 |
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| CDS-3UTR CAA 90 bp | TTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTGTAGATGGCATCCAGAAGTTTCATTaGGTTGAGATAAGGATGGCA | + |
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Preference number: 5 (lower is better) Translates to: LSSRSSQLLQRSGKSVDGIQKFH*VEIRMA Trigger: TGCCATCCTTATCTCAACCAAATGAAACTTCTGGAT...GCCATCTACAGACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR CAA 90 bp | TATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCACCTGCATGTTCTCTTaGATCCGCTCCTCTTTGAGA | + |
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Preference number: 5 (lower is better) Translates to: YLFVIFKKFSIATEKWQVTCMFS*IRSSLR Trigger: TCTCAAAGAGGAGCGGATCAAAGAGAACATGCAGGT...GACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021628.4 |
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| CDS-3UTR CAA 90 bp | TATCTTTTTGTTATCTTCAAGAAGTTCTCAATTGCTACAGAGAAGTGGCAAGTCTCCTTAGCTTTACTCTaGGGACACTCTAGAGGAAGA | + |
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Preference number: 5 (lower is better) Translates to: YLFVIFKKFSIATEKWQVSLALL*GHSRGR Trigger: TCTTCCTCTAGAGTGTCCCAAGAGTAAAGCTAAGGA...GACTTGCCACTTCTCTGTAGCAATTGAGAACTTCTTGAAGATAACAAAAAGATA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS CAA 90 bp | AAACCAGCATCTATAGCTATTTTGGTGAGCTCCTTAGCTTTACTCTaGGGACACTCTAGAGGAAGAGCAGTACCAAAACCCAGCACTGGA | + |
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Preference number: 6 (lower is better) Translates to: KPASIAILVSSLALL*GHSRGRAVPKPSTG Trigger: TCCAGTGCTGGGTTTTGGTACTGCTCTTCCTCTAGAGTGTCCCAAGAGTAAAGCTAAGGAGCTCACCAAAATAGCTATAGATGCTGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS CAA 72 bp | TCTATAGCTATTTTGGTGAGCTCCTTAGCTTTACTCTaGGGACACTCTAGAGGAAGAGCAGTACCAAAACCC | + |
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Preference number: 6 (lower is better) Translates to: SIAILVSSLALL*GHSRGRAVPKP Trigger: GGGTTTTGGTACTGCTCTTCCTCTAGAGTGTCCCAAGAGTAAAGCTAAGGAGCTCACCAAAATAGCTATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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| CDS CCA 72 bp | TACTGGAAAATTTTCTTCTCCTGGTTTCAGGGCCATTaGGTAATGAATGAGATACAGGTCCACATAGTCGAA | + |
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Preference number: 6 (lower is better) Translates to: YWKIFFSWFQGH*VMNEIQVHIVE Trigger: TTCGACTATGTGGACCTGTATCTCATTCATTACCCAATGGCCCTGAAACCAGGAGAAGAAAATTTTCCAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021628.4 ENSMUST00000223285.2 |
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