Pregenerated sensors for AKR1C20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000054757Ensembl transcript IDs: ENSMUST00000078239.5, ENSMUST00000080361.13, ENSMUST00000221564.2
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTAACCTCATTATACCACAACTACTTGTGGCTGGTAAACGTCACATaGGTTCATATCCATAGCCATCTTCTTTCTCCTCTCCTCCTCCCA | + |
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Preference number: 1 (lower is better) Translates to: LTSLYHNYLWLVNVT*VHIHSHLLSPLLLP Trigger: TGGGAGGAGGAGAGGAGAAAGAAGATGGCTATGGATATGAACCCATGTGACGTTTACCAGCCACAAGTAGTTGTGGTATAATGAGGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR GCA 90 bp | ACTCAGCAGAGCCAGAATTGCTCAGAAGTTAGGATGAGGGTGATATaGAATCATCACATTTTGAGAGTATCCTTTCTATACAGTCTTCCC | + |
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Preference number: 1 (lower is better) Translates to: TQQSQNCSEVRMRVI*NHHILRVSFLYSLP Trigger: GGGAAGACTGTATAGAAAGGATACTCTCAAAATGTGATGATTGCATATCACCCTCATCCTAACTTCTGAGCAATTCTGGCTCTGCTGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| 3UTR-3UTR GCA 90 bp | TGGCTGGTAAACGTCACATGGGTTCATATCCATAGCCATCTTCTTTCTCCTCTCCCCACTCTTCTGAGATaGTCTGTCTCTGCAACTCTT | + |
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Preference number: 2 (lower is better) Translates to: WLVNVTWVHIHSHLLSPLPTLLR*SVSATL Trigger: AAGAGTTGCAGAGACAGAGCATCTCAGAAGAGTGGG...GAGAGGAGAAAGAAGATGGCTATGGATATGAACCCATGTGACGTTTACCAGCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR-3UTR GCA 90 bp | GCTTTGCCTAACTTTCCCTGTCCAATCACAGGCCTACTCTGCACTAATGTAATGTCCTTAAAGCCCAGATaGACAGGAAACGTAAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: ALPNFPCPITGLLCTNVMSLKPR*TGNVKR Trigger: TCTTTTTACGTTTCCTGTGCATCTGGGCTTTAAGGA...CATTACATTAGTGCAGAGTAGGCCTGTGATTGGACAGGGAAAGTTAGGCAAAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR-3UTR GCA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGACAGCAGAGCCAGAATTaGTCAGAAGTTAGGATGAGG | + |
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Preference number: 2 (lower is better) Translates to: ITTHIFLGKSFQDANGSGQQSQN*SEVRMR Trigger: CCTCATCCTAACTTCTGAGCAATTCTGGCTCTGCTG...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| 3UTR-3UTR GCA 90 bp | GCTTTGCCTAACTTTCCCTGTCCAATCACAGGCCTACTCTGCACTAATGTAATGAAATCCTGCAACACATaGCACACACTTAAGGTTAAA | + |
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Preference number: 2 (lower is better) Translates to: ALPNFPCPITGLLCTNVMKSCNT*HTLKVK Trigger: TTTAACCTTAAGTGTGTGGCATGTGTTGCAGGATTT...CATTACATTAGTGCAGAGTAGGCCTGTGATTGGACAGGGAAAGTTAGGCAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR-3UTR CAA 90 bp | TGGCTGGTAAACGTCACATGGGTTCATATCCATAGCCATCTTCTTTCTCCTCTCCTGCAACTCTTAGCTTaGCCTAACTTTCCCTGTCCA | + |
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Preference number: 3 (lower is better) Translates to: WLVNVTWVHIHSHLLSPLLQLLA*PNFPCP Trigger: TGGACAGGGAAAGTTAGGCAAAGCTAAGAGTTGCAG...GAGAGGAGAAAGAAGATGGCTATGGATATGAACCCATGTGACGTTTACCAGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR GCA 72 bp | TTGCCTAACTTTCCCTGTCCAATCACAGGCCTACTCTaGACTAATGTAATGGGACATAGAAAATCCTGCAAC | + |
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Preference number: 3 (lower is better) Translates to: LPNFPCPITGLL*TNVMGHRKSCN Trigger: GTTGCAGGATTTTCTATGTCCCATTACATTAGTGCAGAGTAGGCCTGTGATTGGACAGGGAAAGTTAGGCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR CCA 72 bp | TTATACCACAACTACTTGTGGCTGGTAAACGTCACATaGGTTCATATCCATAGCCATCTTCTTTCTCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LYHNYLWLVNVT*VHIHSHLLSPL Trigger: GAGAGGAGAAAGAAGATGGCTATGGATATGAACCCATGTGACGTTTACCAGCCACAAGTAGTTGTGGTATAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| 3UTR GCA 72 bp | AGCCAGAATTGCTCAGAAGTTAGGATGAGGGTGATATaGAATCATCACATTTTGAGAGTATCCTTTCTATAC | + |
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Preference number: 3 (lower is better) Translates to: SQNCSEVRMRVI*NHHILRVSFLY Trigger: GTATAGAAAGGATACTCTCAAAATGTGATGATTGCATATCACCCTCATCCTAACTTCTGAGCAATTCTGGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR TCA 90 bp | TCTGTAAAACAAGATTTAAGGTTCCTGGAGATGTCCTTAAAGCCCAGATGCACACTCCTAGGTACCTCTTaGGGTGCAGAGGTACCAAAC | + |
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Preference number: 4 (lower is better) Translates to: SVKQDLRFLEMSLKPRCTLLGTS*GAEVPN Trigger: GTTTGGTACCTCTGCACCTCAAGAGGTACCTAGGAG...TGTGCATCTGGGCTTTAAGGACATCTCCAGGAACCTTAAATCTTGTTTTACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR TCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGACTCCTAGGTACCTCTTaGGGTGCAGAGGTACCAAAC | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLRLLGTS*GAEVPN Trigger: GTTTGGTACCTCTGCACCTCAAGAGGTACCTAGGAG...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR TCA 90 bp | ACAGGCCTACTCTGCACTAATGTAATGGGACATAGAAAATCCTGCAACACATGCAGTATAGGGATGAAGTaGCCATCATTTAGAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: TGLLCTNVMGHRKSCNTCSIGMK*PSFRRT Trigger: AGTTCTTCTAAATGATGGTCACTTCATCCCTATACT...GCATGTGTTGCAGGATTTTCTATGTCCCATTACATTAGTGCAGAGTAGGCCTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR TCA 90 bp | TTTCCCTGTCCAATCACAGGCCTACTCTGCACTAATGTAATGGGACATAGAAAAACCTCCTTTTCATTTTaGTACACAGCAGCACAATCA | + |
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Preference number: 4 (lower is better) Translates to: FPCPITGLLCTNVMGHRKTSFSF*YTAAQS Trigger: TGATTGTGCTGCTGTGTATCAAAATGAAAAGGAGGT...TTTTCTATGTCCCATTACATTAGTGCAGAGTAGGCCTGTGATTGGACAGGGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR CCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGATGGCTTCATGGCTATTaGGAAATGAATGAGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLRWLHGY*EMNEVQ Trigger: CTGTACCTCATTCATTTCCCAATAGCCATGAAGCCA...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR TCA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGACTATTGGGAAATGAATaGGGTACAGGTCCACATAAT | + |
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Preference number: 4 (lower is better) Translates to: ITTHIFLGKSFQDANGSGLLGNE*GTGPHN Trigger: ATTATGTGGACCTGTACCTCATTCATTTCCCAATAG...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR TCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGATCCACCGAAGTCAACTaGAATTCAAAAACCTGCATA | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLRSTEVN*NSKTCI Trigger: TATGCAGGTTTTTGAATTTCAGTTGACTTCGGTGGA...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR GCA 90 bp | AGTGGTCTTTCTGTAAAACAAGATTTAAGGTTCCTGGAGATGTCCTTAAAGCCCGCCAAACCTTTGATGTaGAAAATATATCTTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SGLSVKQDLRFLEMSLKPAKPLM*KIYLPS Trigger: AGAGGGAAGATATATTTTGCACATCAAAGGTTTGGC...GGGCTTTAAGGACATCTCCAGGAACCTTAAATCTTGTTTTACAGAAAGACCACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR CCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGAGAAATAATTCTCTCCTaGCTTCATGGCTATTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLREIILS*LHGYWE Trigger: TTCCCAATAGCCATGAAGCCAGGAGAGAATTATTTC...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR TCA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGAAGTATAGGGATGAAGTaGCCATCATTTAGAAGAACT | + |
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Preference number: 4 (lower is better) Translates to: ITTHIFLGKSFQDANGSGSIGMK*PSFRRT Trigger: AGTTCTTCTAAATGATGGTCACTTCATCCCTATACT...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR GCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGAGCCAAACCTTTGATGTaGAAAATATATCTTCCCTCT | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLRAKPLM*KIYLPS Trigger: AGAGGGAAGATATATTTTGCACATCAAAGGTTTGGC...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR GCA 90 bp | AGTGGTCTTTCTGTAAAACAAGATTTAAGGTTCCTGGAGATGTCCTTAAAGCCCGTCACAGATATCCACTaGATCATATATGAATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: SGLSVKQDLRFLEMSLKPVTDIH*IIYEFS Trigger: GGAAAATTCATATATGATGCAGTGGATATCTGTGAC...GGGCTTTAAGGACATCTCCAGGAACCTTAAATCTTGTTTTACAGAAAGACCACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR CCA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGAGTATTCATCCAAAAATaGAAAATCAGGATGGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: ITTHIFLGKSFQDANGSGVFIQK*KIRMVL Trigger: GAGGACCATCCTGATTTTCCATTTTTGGATGAATAC...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR GCA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGAGTCACAGATATCCACTaGATCATATATGAATTTTCC | + |
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Preference number: 4 (lower is better) Translates to: VFAFLLKIIDSAEPELLRVTDIH*IIYEFS Trigger: GGAAAATTCATATATGATGCAGTGGATATCTGTGAC...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR CAA 90 bp | GATGCTCTGTCTCTGCAACTCTTAGCTTTGCCTAACTTTCCCTGTCCAATCACAGTGCCATCTACAATCTaGCTTCTGATGGCTAATCCT | + |
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Preference number: 5 (lower is better) Translates to: DALSLQLLALPNFPCPITVPSTI*LLMANP Trigger: AGGATTAGCCATCAGAAGCAAGATTGTAGATGGCAC...TGTGATTGGACAGGGAAAGTTAGGCAAAGCTAAGAGTTGCAGAGACAGAGCATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR CAA 90 bp | CTGTCTCTGCAACTCTTAGCTTTGCCTAACTTTCCCTGTCCAATCACAGGCCTATACCTCCTTTTCATTTaGATACACAGCAGCACAATC | + |
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Preference number: 5 (lower is better) Translates to: LSLQLLALPNFPCPITGLYLLFI*IHSSTI Trigger: GATTGTGCTGCTGTGTATCAAAATGAAAAGGAGGTA...TAGGCCTGTGATTGGACAGGGAAAGTTAGGCAAAGCTAAGAGTTGCAGAGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTAACTTTCCCTGTCCAATCACAGGCCTACTCTGCACTAATGTAATGGGAAGAACAGGAAAGCTCTaGTCCACCCATTCTTTATCA | + |
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Preference number: 5 (lower is better) Translates to: LPNFPCPITGLLCTNVMGRTGKL*STHSLS Trigger: TGATAAAGAATGGGTGGACAAGAGCTTTCCTGTTCT...TCCCATTACATTAGTGCAGAGTAGGCCTGTGATTGGACAGGGAAAGTTAGGCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS TCA 90 bp | TCCTGGCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTTaGTGTGCAAAATATATCTTCCCTCTTCACAGTGCCATCTACAAT | + |
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Preference number: 5 (lower is better) Translates to: SWLHQFWTMKCLPNL*CAKYIFPLHSAIYN Trigger: ATTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGCCAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078239.5 ENSMUST00000221564.2 |
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| CDS GCA 90 bp | GCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTTGATGTaGAAAATATATCTTCCCTCTTCACAGTGCCATCTACAATCTTGC | + |
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Preference number: 5 (lower is better) Translates to: AAPVLDDEMFAKPLM*KIYLPSSQCHLQSC Trigger: GCAAGATTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078239.5 ENSMUST00000221564.2 |
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| CDS GCA 90 bp | CCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTTGATGTaGAAAATATATCTTCCCTCTTCACAGTGCCATCTACAATCTTGC | + |
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Preference number: 5 (lower is better) Translates to: PAPVLDDEMFAKPLM*KIYLPSSQCHLQSC Trigger: GCAAGATTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS TCA 90 bp | GCATACCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTTaGTGTGCAAAATATATCTTCCCTCTTCACAGTGCCATCTACAAT | + |
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Preference number: 5 (lower is better) Translates to: AYLHQFWTMKCLPNL*CAKYIFPLHSAIYN Trigger: ATTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGGTATGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR CAA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGAGTGCCATCTACAATCTaGCTTCTGATGGCTAATCCT | + |
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Preference number: 5 (lower is better) Translates to: ITTHIFLGKSFQDANGSGVPSTI*LLMANP Trigger: AGGATTAGCCATCAGAAGCAAGATTGTAGATGGCAC...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS TCA 90 bp | TTGGGAAATAATTCTCTCCTGGCTTCATGGCTATTGGGAAATGAATaGGGTACAGGTCCACATAATCTAACTGGAGTTGCTTCAATGATT | + |
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Preference number: 5 (lower is better) Translates to: LGNNSLLASWLLGNE*GTGPHNLTGVASMI Trigger: AATCATTGAAGCAACTCCAGTTAGATTATGTGGACCTGTACCTCATTCATTTCCCAATAGCCATGAAGCCAGGAGAGAATTATTTCCCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR CAA 90 bp | GTTTTTGCTTTCTTGCTTAAGATTATAGACTCAGCAGAGCCAGAATTGCTCAGAAGAACAGGAAAGCTCTaGTCCACCCATTCTTTATCA | + |
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Preference number: 5 (lower is better) Translates to: VFAFLLKIIDSAEPELLRRTGKL*STHSLS Trigger: TGATAAAGAATGGGTGGACAAGAGCTTTCCTGTTCT...TCTGAGCAATTCTGGCTCTGCTGAGTCTATAATCTTAAGCAAGAAAGCAAAAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR CAA 90 bp | ATCACTACACACATATTTCTAGGTAAATCCTTCCAGGATGCAAATGGATCAGGATACCTCCTTTTCATTTaGATACACAGCAGCACAATC | + |
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Preference number: 5 (lower is better) Translates to: ITTHIFLGKSFQDANGSGYLLFI*IHSSTI Trigger: GATTGTGCTGCTGTGTATCAAAATGAAAAGGAGGTA...TCCTGATCCATTTGCATCCTGGAAGGATTTACCTAGAAATATGTGTGTAGTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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| CDS-3UTR CAA 90 bp | TCTGTAAAACAAGATTTAAGGTTCCTGGAGATGTCCTTAAAGCCCAGATGCACATTCCATTCTCATCTTTaGGGAAATAATTCTCTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SVKQDLRFLEMSLKPRCTFHSHL*GNNSLL Trigger: CAGGAGAGAATTATTTCCCAAAAGATGAGAATGGAA...TGTGCATCTGGGCTTTAAGGACATCTCCAGGAACCTTAAATCTTGTTTTACAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000078239.5 |
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| CDS CAA 90 bp | CTCCTGGCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTaGATGTGCAAAATATATCTTCCCTCTTCACAGTGCCATCTACAA | + |
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Preference number: 6 (lower is better) Translates to: LLAAPVLDDEMFAKP*MCKIYLPSSQCHLQ Trigger: TTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGCCAGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078239.5 ENSMUST00000221564.2 |
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| CDS TCA 72 bp | CACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTTaGTGTGCAAAATATATCTTCCCTCTTCACAGTGCC | + |
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Preference number: 6 (lower is better) Translates to: HQFWTMKCLPNL*CAKYIFPLHSA Trigger: GGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078239.5 ENSMUST00000080361.13 ENSMUST00000221564.2 |
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| CDS CAA 72 bp | GCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTaGATGTGCAAAATATATCTTCCCTCTTCACAGTGC | + |
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Preference number: 6 (lower is better) Translates to: APVLDDEMFAKP*MCKIYLPSSQC Trigger: GCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078239.5 ENSMUST00000080361.13 ENSMUST00000221564.2 |
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| CDS CAA 90 bp | AGCATACCTGCACCAGTTCTGGACGATGAAATGTTTGCCAAACCTTaGATGTGCAAAATATATCTTCCCTCTTCACAGTGCCATCTACAA | + |
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Preference number: 6 (lower is better) Translates to: SIPAPVLDDEMFAKP*MCKIYLPSSQCHLQ Trigger: TTGTAGATGGCACTGTGAAGAGGGAAGATATATTTTGCACATCAAAGGTTTGGCAAACATTTCATCGTCCAGAACTGGTGCAGGTATGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000080361.13 |
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