Pregenerated sensors for AKR1C13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021213Ensembl transcript IDs: ENSMUST00000021634.4, ENSMUST00000128892.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCCATGTGTCACAGAAATCCACAGTGTCCAACAGAGATTTCCCTTaGTCATTTACTGGAAAATCATTATCCCCTGACTTCATTGGCACT | + |
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Preference number: 1 (lower is better) Translates to: SHVSQKSTVSNRDFP*SFTGKSLSPDFIGT Trigger: AGTGCCAATGAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTTGGACACTGTGGATTTCTGTGACACATGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR TCA 90 bp | CAACAGAGATTTCCCTTGCTCATTTACTGGAAAATCATTATCCCCTaGCTTCATTGGCACTGGGTAATGCATAATGTAAAGATCAACATA | + |
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Preference number: 1 (lower is better) Translates to: QQRFPLLIYWKIIIP*LHWHWVMHNVKINI Trigger: TATGTTGATCTTTACATTATGCATTACCCAGTGCCAATGAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR-3UTR TCA 90 bp | AACTGGGGAGTTCTGGTCCACCCATTCTTTATATCGCTGGGTCCCCAGAGCACCGCTTTAATCTTGCTTTaGATGGCCTGTCCTATCTCC | + |
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Preference number: 2 (lower is better) Translates to: NWGVLVHPFFISLGPQSTALILL*MACPIS Trigger: GGAGATAGGACAGGCCATTCAAAGCAAGATTAAAGC...GGTGCTCTGGGGACCCAGCGATATAAAGAATGGGTGGACCAGAACTCCCCAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR CAA 90 bp | TTGATCAGAAATGACAAGTCCATCCAACAGTCCATCTTGGTCATATaGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: LIRNDKSIQQSILVI*PASLSTHRDIRQKP Trigger: TGGCTTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGTCATTTCTGATCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR-3UTR GCA 90 bp | AACTGGGGAGTTCTGGTCCACCCATTCTTTATATCGCTGGGTCCCCAGAGCACCCTCTTCTACTTGGTATaGATAAGCAGTATCAACATG | + |
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Preference number: 2 (lower is better) Translates to: NWGVLVHPFFISLGPQSTLFYLV*ISSINM Trigger: CATGTTGATACTGCTTATGCATACCAAGTAGAAGAG...GGTGCTCTGGGGACCCAGCGATATAAAGAATGGGTGGACCAGAACTCCCCAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR CAA 90 bp | CAACCAAGATTGATCAGAAATGACAAGTCCATCCAACAGTCCATCTaGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGG | + |
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Preference number: 2 (lower is better) Translates to: QPRLIRNDKSIQQSI*VILPASLSTHRDIR Trigger: CCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGTCATTTCTGATCAATCTTGGTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR-3UTR TCA 90 bp | CCAACAGAGATTTCCCTTGCTCATTTACTGGAAAATCATTATCCCCTGACTTCATTTCCAAGGCAGGCTTaGCCAGCTCTGGTCGAAAGC | + |
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Preference number: 2 (lower is better) Translates to: PTEISLAHLLENHYPLTSFPRQA*PALVES Trigger: GCTTTCGACCAGAGCTGGTCAAGCCTGCCTTGGAAA...TGAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR-3UTR TCA 90 bp | TCTCTTTACAACCCCAGCTTTAATCTTGCTTTGAATGGCCTGTCCTATCTCCTCAAAGTTTTCCACAGTTaGGAGTTATACATGGGAGAT | + |
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Preference number: 2 (lower is better) Translates to: SLYNPSFNLALNGLSYLLKVFHS*ELYMGD Trigger: ATCTCCCATGTATAACTCTCAACTGTGGAAAACTTT...GAGGAGATAGGACAGGCCATTCAAAGCAAGATTAAAGCTGGGGTTGTAAAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR-3UTR GCA 90 bp | GCTTACGCTGGTTCAAATAGAGATGACATTCAACCTGGTTGCAGACAGGTTTGTAACAGAGATTTCCCTTaGTCATTTACTGGAAAATCA | + |
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Preference number: 2 (lower is better) Translates to: AYAGSNRDDIQPGCRQVCNRDFP*SFTGKS Trigger: TGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTT...ACAAACCTGTCTGCAACCAGGTTGAATGTCATCTCTATTTGAACCAGCGTAAGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGGGAGTTCTGGTCCACCCATTCTTTATATCGCTGGGTCCCCAGAGCACCGTTCCAGTGACTTACTCTaGGGAACATTTATCTTTACT | + |
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Preference number: 3 (lower is better) Translates to: LGSSGPPILYIAGSPEHRSSDLL*GTFIFT Trigger: AGTAAAGATAAATGTTCCCAAGAGTAAGTCACTGGA...ACGGTGCTCTGGGGACCCAGCGATATAAAGAATGGGTGGACCAGAACTCCCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR-3UTR CAA 90 bp | CCACCCATTCTTTATATCGCTGGGTCCCCAGAGCACCGTAAGCAACGAGAACAAGAAAGTTTTCCACAGTaGAGAGTTATACATGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: PPILYIAGSPEHRKQREQESFPQ*RVIHGR Trigger: TCTCCCATGTATAACTCTCAACTGTGGAAAACTTTC...TTGTTCTCGTTGCTTACGGTGCTCTGGGGACCCAGCGATATAAAGAATGGGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR CCA 72 bp | CTAGAGCTAGGCATGCAGCCTCCAGTGACTTACTCTTaGGAACATTTATCTTTACTAGGTCCTCTTTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: LELGMQPPVTYS*EHLSLLGPLSP Trigger: GGGAGAAAGAGGACCTAGTAAAGATAAATGTTCCCAAGAGTAAGTCACTGGAGGCTGCATGCCTAGCTCTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR GCA 72 bp | TTGAATGGCCTGTCCTATCTCCTCTTCTACTTGGTATaGATAAGCAGTATCAACATGGCGGTACCCAACATC | + |
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Preference number: 3 (lower is better) Translates to: LNGLSYLLFYLV*ISSINMAVPNI Trigger: GATGTTGGGTACCGCCATGTTGATACTGCTTATGCATACCAAGTAGAAGAGGAGATAGGACAGGCCATTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR TCA 72 bp | GCTTCAGCTGAATGTGAGTTGCTAAGCAACCAAGATTaGTCAGAAATGACAAGTCCATCCAACAGTCCATCT | + |
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Preference number: 3 (lower is better) Translates to: ASAECELLSNQD*SEMTSPSNSPS Trigger: AGATGGACTGTTGGATGGACTTGTCATTTCTGATCAATCTTGGTTGCTTAGCAACTCACATTCAGCTGAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR GCA 72 bp | TCACAGAAATCCACAGTGTCCAACAGAGATTTCCCTTaGTCATTTACTGGAAAATCATTATCCCCTGACTTC | + |
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Preference number: 3 (lower is better) Translates to: SQKSTVSNRDFP*SFTGKSLSPDF Trigger: GAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTTGGACACTGTGGATTTCTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| 3UTR TCA 72 bp | TTTCCCTTGCTCATTTACTGGAAAATCATTATCCCCTaGCTTCATTGGCACTGGGTAATGCATAATGTAAAG | + |
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Preference number: 3 (lower is better) Translates to: FPLLIYWKIIIP*LHWHWVMHNVK Trigger: CTTTACATTATGCATTACCCAGTGCCAATGAAGTCAGGGGATAATGATTTTCCAGTAAATGAGCAAGGGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR TCA 90 bp | ATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAGCCATGATTAGGTTTCCAAGGCAGGCTTaGCCAGCTCTGGTCGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: IASITVHTQGHQAEAMIRFPRQA*PALVES Trigger: GCTTTCGACCAGAGCTGGTCAAGCCTGCCTTGGAAA...CCTAATCATGGCTTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR GCA 90 bp | CTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAGCCCCTTGGGTTTATAGGTaGCAAAGCCCAGGGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: LGHIASITVHTQGHQAEAPWVYR*QSPGQE Trigger: TTCCTGCCCTGGGCTTTGGCACCTATAAACCCAAGG...GGCTTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR TCA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGACTGAAGCTTTTTCAGTaGCTTTTCCAAGGCAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRLKLFQ*LFQGRL Trigger: AAGCCTGCCTTGGAAAAGTCACTGAAAAAGCTTCAG...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CCA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAATGGATACTCTGGGTaGTCAACAAGGAACTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRNGYSG*STRNSA Trigger: AGCAGAGTTCCTTGTTGACCACCCAGAGTATCCATT...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR CAA 72 bp | AATGACAAGTCCATCCAACAGTCCATCTTGGTCATATaGCCAGCATCACTGTCCACACACAGGGACATCAGG | + |
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Preference number: 4 (lower is better) Translates to: NDKSIQQSILVI*PASLSTHRDIR Trigger: CCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGTCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR TCA 90 bp | ACAAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACGGCCATCATTTAGTTTaGCACAGTGCTGTTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: TSPSNSPSWSYCQHHCPHGHHLV*HSAVWS Trigger: GCTCCAAACAGCACTGTGTCAAACTAAATGATGGCC...GTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR GCA 90 bp | GCCTCCAGTGACTTACTCTTGGGAACATTTATCTTTACTAGGTCCTCTTTCTCCCCTTGGGTTTATAGGTaGCAAAGCCCAGGGCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: ASSDLLLGTFIFTRSSFSPWVYR*QSPGQE Trigger: TTCCTGCCCTGGGCTTTGGCACCTATAAACCCAAGG...GGAGAAAGAGGACCTAGTAAAGATAAATGTTCCCAAGAGTAAGTCACTGGAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR GCA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAGTCAACAAGGAACTCTaGTGGAAGGTATCGAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRVNKEL*WKVSKV Trigger: AACTTTCGATACCTTCCAGCAGAGTTCCTTGTTGAC...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CCA 90 bp | ACAAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACATCATTCAAGAGAACTaGGGAGTTCTGGTCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: TSPSNSPSWSYCQHHCPHIIQEN*GVLVHP Trigger: TGGGTGGACCAGAACTCCCCAGTTCTCTTGAATGAT...GTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR TCA 90 bp | TCTCTTTACAACCCCAGCTTTAATCTTGCTTTGAATGGCCTGTCCTATCTCCTCGGTAAACATCCACTGTaGGATGCTGATGGCTACCCT | + |
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Preference number: 4 (lower is better) Translates to: SLYNPSFNLALNGLSYLLGKHPL*DADGYP Trigger: AGGGTAGCCATCAGCATCTCACAGTGGATGTTTACC...GAGGAGATAGGACAGGCCATTCAAAGCAAGATTAAAGCTGGGGTTGTAAAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACCCAGTGACTTACTCTTaGGAACCTCCTTGGGTTTAT | + |
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Preference number: 4 (lower is better) Translates to: TSPSNSPSWSYCQHHCPHPVTYS*EPPWVY Trigger: ATAAACCCAAGGAGGTTCCCAAGAGTAAGTCACTGG...GTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR CAA 72 bp | CTTGCTTTGAATGGCCTGTCCTATCTCCTCTTCTACTaGGTATGCATAAGCAGTATCAACATGGCGGTACCC | + |
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Preference number: 4 (lower is better) Translates to: LALNGLSYLLFY*VCISSINMAVP Trigger: GGGTACCGCCATGTTGATACTGCTTATGCATACCAAGTAGAAGAGGAGATAGGACAGGCCATTCAAAGCAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR GCA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGACTCTTCTACTTGGTATaGATAAGCAGTATCAACATG | + |
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Preference number: 4 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRLFYLV*ISSINM Trigger: CATGTTGATACTGCTTATGCATACCAAGTAGAAGAG...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR GCA 90 bp | CTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAGCCAACAGAGATTTCCCTTaGTCATTTACTGGAAAATCA | + |
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Preference number: 4 (lower is better) Translates to: LGHIASITVHTQGHQAEANRDFP*SFTGKS Trigger: TGATTTTCCAGTAAATGAGCAAGGGAAATCTCTGTT...GGCTTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CCA 90 bp | AAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGAACTGGGGAGTTCTaGTCCACCCATTCTTTATAT | + |
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Preference number: 4 (lower is better) Translates to: KSIQQSILVILPASLSTHRTGEF*STHSLY Trigger: ATATAAAGAATGGGTGGACCAGAACTCCCCAGTTCT...GTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR CAA 72 bp | TTGATCAGAAATGACAAGTCCATCCAACAGTCCATCTaGGTCATATTGCCAGCATCACTGTCCACACACAGG | + |
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Preference number: 4 (lower is better) Translates to: LIRNDKSIQQSI*VILPASLSTHR Trigger: CCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGTCATTTCTGATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| 3UTR CAA 72 bp | TCTAGAGCTAGGCATGCAGCCTCCAGTGACTTACTCTaGGGAACATTTATCTTTACTAGGTCCTCTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: SRARHAASSDLL*GTFIFTRSSFS Trigger: GGAGAAAGAGGACCTAGTAAAGATAAATGTTCCCAAGAGTAAGTCACTGGAGGCTGCATGCCTAGCTCTAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR CCA 90 bp | ACAAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACTTCGCTTGTTCTTTTTaGCCACATCACAAAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: TSPSNSPSWSYCQHHCPHFACSF*PHHKEL Trigger: CAGTTCTTTGTGATGTGGCCAAAAAGAACAAGCGAA...GTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR TCA 90 bp | TGGGAACATTTATCTTTACTAGGTCCTCTTTCTCCCCATCATAATGATTCACTAGGCCATCATTTAGTTTaGCACAGTGCTGTTTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: WEHLSLLGPLSPHHNDSLGHHLV*HSAVWS Trigger: GCTCCAAACAGCACTGTGTCAAACTAAATGATGGCC...TAGTGAATCATTATGATGGGGAGAAAGAGGACCTAGTAAAGATAAATGTTCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS-3UTR CAA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAGGGCACAATCCCACGTaGAATCAGGTATCGAAGTGC | + |
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Preference number: 5 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRGHNPT*NQVSKC Trigger: GCACTTCGATACCTGATTCAACGTGGGATTGTGCCC...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS GCA 90 bp | ACTCTGGGCCAGGGGCACAATCCCACGTTGAATCAGGTATCGAAGTaGAATCAAGGCAGGACTTCGCTTGTTCTTTTTGGCCACATCACA | + |
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Preference number: 5 (lower is better) Translates to: TLGQGHNPTLNQVSK*NQGRTSLVLFGHIT Trigger: TGTGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | CCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGATCCAGTGACTTACTCTaGGGAACCTCCTTGGGTTTA | + |
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Preference number: 5 (lower is better) Translates to: PSWSYCQHHCPHTGTSGRSSDLL*GTSLGL Trigger: TAAACCCAAGGAGGTTCCCAAGAGTAAGTCACTGGA...TCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | AAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACACTTTTCCAAGGCAGGCTaGACCAGCTCTGGTCGAAAG | + |
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Preference number: 5 (lower is better) Translates to: KSIQQSILVILPASLSTHFSKAG*TSSGRK Trigger: CTTTCGACCAGAGCTGGTCAAGCCTGCCTTGGAAAA...GTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS TCA 90 bp | ATCTCATTCTCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTTaGATCAGGTATCGAAGTGCAATCAAGGCAGGACTTCGCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ISFSLKLWARGTIPR*IRYRSAIKAGLRLF Trigger: GAACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | AAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACACAAGGCAGGACTTCGCTaGTTCTTTTTGGCCACATCA | + |
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Preference number: 5 (lower is better) Translates to: KSIQQSILVILPASLSTHKAGLR*FFLATS Trigger: TGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTT...GTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | AAGTCCATCCAACAGTCCATCTTGGTCATATTGCCAGCATCACTGTCCACACACTGGCCATCATTTAGTTaGACACAGTGCTGTTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: KSIQQSILVILPASLSTHWPSFS*TQCCLE Trigger: CTCCAAACAGCACTGTGTCAAACTAAATGATGGCCA...GTGTGTGGACAGTGATGCTGGCAATATGACCAAGATGGACTGTTGGATGGACTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | CATCTTGGTCATATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAAGCTTTAATCTTGCTTaGAATGGCCTGTCCTATCTC | + |
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Preference number: 5 (lower is better) Translates to: HLGHIASITVHTQGHQAESFNLA*NGLSYL Trigger: GAGATAGGACAGGCCATTCAAAGCAAGATTAAAGCT...TTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAATATGACCAAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | ATTGCCAGCATCACTGTCCACACACAGGGACATCAGGCAGAAGCCATGATTAGGAGGTATCGAAAGTTTTaGTTCAGGCCATCTAGTGTT | + |
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Preference number: 5 (lower is better) Translates to: IASITVHTQGHQAEAMIRRYRKF*FRPSSV Trigger: AACACTAGATGGCCTGAACAAAAACTTTCGATACCT...CCTAATCATGGCTTCTGCCTGATGTCCCTGTGTGTGGACAGTGATGCTGGCAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS TCA 90 bp | ACTGAAATCCAAAAACCTGCAAATTCTCTCTCATCTCATTCTCTTTaGAACTCTGGGCCAGGGGCACAATCCCACGTTGAATCAGGTATC | + |
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Preference number: 5 (lower is better) Translates to: TEIQKPANSLSSHSL*NSGPGAQSHVESGI Trigger: GATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGATGAGAGAGAATTTGCAGGTTTTTGGATTTCAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS-3UTR CAA 90 bp | TACGCTGGTTCAAATAGAGATGACATTCAACCTGGTTGCAGACAGGTTTGTACTTGGCCATCATTTAGTTaGACACAGTGCTGTTTGGAG | + |
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Preference number: 5 (lower is better) Translates to: YAGSNRDDIQPGCRQVCTWPSFS*TQCCLE Trigger: CTCCAAACAGCACTGTGTCAAACTAAATGATGGCCA...AGTACAAACCTGTCTGCAACCAGGTTGAATGTCATCTCTATTTGAACCAGCGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128892.8 |
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| CDS CCA 72 bp | ATGCAGCCTCCAGTGACTTACTCTTGGGAACCTCCTTaGGTTTATAGGTGCCAAAGCCCAGGGCAGGAATTA | + |
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Preference number: 6 (lower is better) Translates to: MQPPVTYSWEPP*VYRCQSPGQEL Trigger: TAATTCCTGCCCTGGGCTTTGGCACCTATAAACCCAAGGAGGTTCCCAAGAGTAAGTCACTGGAGGCTGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS CAA 72 bp | CTCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTaGAATCAGGTATCGAAGTGCAATCAAGGCAGGACT | + |
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Preference number: 6 (lower is better) Translates to: LFETLGQGHNPT*NQVSKCNQGRT Trigger: AGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS TCA 72 bp | TCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTTaGATCAGGTATCGAAGTGCAATCAAGGCAGGACTT | + |
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Preference number: 6 (lower is better) Translates to: SLKLWARGTIPR*IRYRSAIKAGL Trigger: AAGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS GCA 72 bp | CAGGGGCACAATCCCACGTTGAATCAGGTATCGAAGTaGAATCAAGGCAGGACTTCGCTTGTTCTTTTTGGC | + |
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Preference number: 6 (lower is better) Translates to: QGHNPTLNQVSK*NQGRTSLVLFG Trigger: GCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS CAA 90 bp | CATCTCATTCTCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTaGAATCAGGTATCGAAGTGCAATCAAGGCAGGACTTCGCTTGTT | + |
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Preference number: 6 (lower is better) Translates to: HLILFETLGQGHNPT*NQVSKCNQGRTSLV Trigger: AACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGATTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS CAA 90 bp | ATCAGGTATCGAAGTGCAATCAAGGCAGGACTTCGCTTGTTCTTTTaGGCCACATCACAAAGAACTGGATCATTCAAGAGAACTGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: IRYRSAIKAGLRLFF*ATSQRTGSFKRTGE Trigger: CTCCCCAGTTCTCTTGAATGATCCAGTTCTTTGTGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS GCA 72 bp | CACAAATGGATACTCTGGGTGGTCAACAAGGAACTCTaGTGGAAGGTATCGAAAGTTTTTGTTCAGGCCATC | + |
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Preference number: 6 (lower is better) Translates to: HKWILWVVNKEL*WKVSKVFVQAI Trigger: GATGGCCTGAACAAAAACTTTCGATACCTTCCAGCAGAGTTCCTTGTTGACCACCCAGAGTATCCATTTGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS CAA 72 bp | CGAAGTGCAATCAAGGCAGGACTTCGCTTGTTCTTTTaGGCCACATCACAAAGAACTGGATCATTCAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RSAIKAGLRLFF*ATSQRTGSFKR Trigger: TCTCTTGAATGATCCAGTTCTTTGTGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACTTCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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| CDS CAA 72 bp | ATCAGGTATCGAAGTGCAATCAAGGCAGGACTTCGCTaGTTCTTTTTGGCCACATCACAAAGAACTGGATCA | + |
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Preference number: 6 (lower is better) Translates to: IRYRSAIKAGLR*FFLATSQRTGS Trigger: TGATCCAGTTCTTTGTGATGTGGCCAAAAAGAACAAGCGAAGTCCTGCCTTGATTGCACTTCGATACCTGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021634.4 |
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