Pregenerated sensors for AKR1C12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021211Ensembl transcript IDs: ENSMUST00000021632.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAAGTCATGTTTCCAAAGCAGGCTTaGCCAGCTCTGGTCGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: SHITSIMVHTQGHQAEVMFPKQA*PALVES Trigger: GCTTTCGACCAGAGCTGGTCAAGCCTGCTTTGGAAA...CATGACTTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR TCA 90 bp | GCATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGATCATCTCATTCTCTTTaGAACTCTGGGCCAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: ASESHHQHYGPHTGTSGRSSHSL*NSGPGA Trigger: TGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGATGA...TCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR CCA 90 bp | GCATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAATCGTTCAAGAGAACTaGGGAGTTCTGGTCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: ASESHHQHYGPHTGTSGRIVQEN*GVLVHP Trigger: TGGGTGGACCAGAACTCCCCAGTTCTCTTGAACGAT...TCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR TCA 90 bp | GCATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAGGCCATCGTTTAGTTTaGCATAGTGCTGTTTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: ASESHHQHYGPHTGTSGRGHRLV*HSAVWS Trigger: GCTCCAAACAGCACTATGTCAAACTAAACGATGGCC...TCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR GCA 90 bp | CTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAAGTCGTCAGCAAGGAACTCTaGTGGAAGGTATCGAAAGTT | + |
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Preference number: 4 (lower is better) Translates to: LSHITSIMVHTQGHQAEVVSKEL*WKVSKV Trigger: AACTTTCGATACCTTCCAGCAGAGTTCCTTGCTGAC...GACTTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR TCA 90 bp | CATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAAGCTTTAATCTTGCTTTaGATGGCCTGTCCTATCTCC | + |
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Preference number: 4 (lower is better) Translates to: HLSHITSIMVHTQGHQAEALILL*MACPIS Trigger: GGAGATAGGACAGGCCATTCAAAGCAAGATTAAAGC...TTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR CCA 90 bp | CTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAAGTCTTCGCTTGTTCCTTTTaGCCACATCACAAAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: LSHITSIMVHTQGHQAEVFACSF*PHHKEL Trigger: CAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAA...GACTTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR CCA 90 bp | CATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAAAGGGCAGGAATTAAGTaGCCATCGTTTAGTTTGACA | + |
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Preference number: 4 (lower is better) Translates to: HLSHITSIMVHTQGHQAERAGIK*PSFSLT Trigger: TGTCAAACTAAACGATGGCCACTTAATTCCTGCCCT...TTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR GCA 90 bp | GCATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGACAATGTCTTTTGACTTaGAGTAATCCAATAGCTTAC | + |
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Preference number: 4 (lower is better) Translates to: ASESHHQHYGPHTGTSGRQCLLT*SNPIAY Trigger: GTAAGCTATTGGATTACTGCAAGTCAAAAGACATTG...TCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS TCA 90 bp | ATCTCATTCTCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTTaGAACAGGTATCGAAGTGCAATTAGGGCAGGGCTTCGCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: ISFSLKLWARGTIPR*NRYRSAIRAGLRLF Trigger: GAACAAGCGAAGCCCTGCCCTAATTGCACTTCGATACCTGTTTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGAGAATGAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR CAA 90 bp | CATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGAATTTTCCAAAGCAGGCTaGACCAGCTCTGGTCGAAAG | + |
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Preference number: 5 (lower is better) Translates to: HLSHITSIMVHTQGHQAEFSKAG*TSSGRK Trigger: CTTTCGACCAGAGCTGGTCAAGCCTGCTTTGGAAAA...TTCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS CCA 90 bp | ACAGGTATCGAAGTGCAATTAGGGCAGGGCTTCGCTTGTTCCTTTTaGCCACATCACAAAGAACTGGATCGTTCAAGAGAACTGGGGAGT | + |
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Preference number: 5 (lower is better) Translates to: TGIEVQLGQGFACSF*PHHKELDRSRELGS Trigger: ACTCCCCAGTTCTCTTGAACGATCCAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAGCCCTGCCCTAATTGCACTTCGATACCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS-3UTR CAA 90 bp | GCATCTGAGTCACATCACCAGCATTATGGTCCACACACAGGGACATCAGGCAGACTTCGCTTGTTCCTTTaGGCCACATCACAAAGAACT | + |
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Preference number: 5 (lower is better) Translates to: ASESHHQHYGPHTGTSGRLRLFL*ATSQRT Trigger: AGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAG...TCTGCCTGATGTCCCTGTGTGTGGACCATAATGCTGGTGATGTGACTCAGATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS TCA 72 bp | TCTTTGAAACTCTGGGCCAGGGGCACAATCCCACGTTaGAACAGGTATCGAAGTGCAATTAGGGCAGGGCTT | + |
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Preference number: 6 (lower is better) Translates to: SLKLWARGTIPR*NRYRSAIRAGL Trigger: AAGCCCTGCCCTAATTGCACTTCGATACCTGTTTCAACGTGGGATTGTGCCCCTGGCCCAGAGTTTCAAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS CAA 90 bp | AACAGGTATCGAAGTGCAATTAGGGCAGGGCTTCGCTTGTTCCTTTaGGCCACATCACAAAGAACTGGATCGTTCAAGAGAACTGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: NRYRSAIRAGLRLFL*ATSQRTGSFKRTGE Trigger: CTCCCCAGTTCTCTTGAACGATCCAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAGCCCTGCCCTAATTGCACTTCGATACCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS CAA 72 bp | CGAAGTGCAATTAGGGCAGGGCTTCGCTTGTTCCTTTaGGCCACATCACAAAGAACTGGATCGTTCAAGAGA | + |
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Preference number: 6 (lower is better) Translates to: RSAIRAGLRLFL*ATSQRTGSFKR Trigger: TCTCTTGAACGATCCAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAGCCCTGCCCTAATTGCACTTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS CAA 72 bp | AACAGGTATCGAAGTGCAATTAGGGCAGGGCTTCGCTaGTTCCTTTTGGCCACATCACAAAGAACTGGATCG | + |
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Preference number: 6 (lower is better) Translates to: NRYRSAIRAGLR*FLLATSQRTGS Trigger: CGATCCAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAGCCCTGCCCTAATTGCACTTCGATACCTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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| CDS CCA 72 bp | GAAGTGCAATTAGGGCAGGGCTTCGCTTGTTCCTTTTaGCCACATCACAAAGAACTGGATCGTTCAAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: EVQLGQGFACSF*PHHKELDRSRE Trigger: TTCTCTTGAACGATCCAGTTCTTTGTGATGTGGCCAAAAGGAACAAGCGAAGCCCTGCCCTAATTGCACTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021632.5 |
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