Pregenerated sensors for AKR1A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028692Ensembl transcript IDs: ENSMUST00000030455.15, ENSMUST00000128059.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | TTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATaGTTAGCAGGAGAACTGAAAGGGAAGCTGAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: FIDSFFLGSSRQ*LAGELKGKLRN Trigger: GTTTCTCAGCTTCCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | GATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGGCACAGAGGCCACACTaGGGACATCATCAATCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DSFFLGSSRQCLAGELKGAQRPH*GHHQSA Trigger: GGCAGATTGATGATGTCCTCAGTGTGGCCTCTGTGC...CCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | GATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGCGTGACAGTGGGCAATaGGCTCATTCTGAGCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: DSFFLGSSRQCLAGELKGRDSGQ*AHSEPG Trigger: ACCTGGCTCAGAATGAGCTCATTGCCCACTGTCACG...CCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | AGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGAAGCTGAGAAACTATAGGCACCTCCAAGCCCCGTaGGTGACAGTGGGCAATGAG | + |
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Preference number: 4 (lower is better) Translates to: SSRQCLAGELKGKLRNYRHLQAP*VTVGNE Trigger: CTCATTGCCCACTGTCACGCACGGGGCTTGGAGGTG...CCTATAGTTTCTCAGCTTCCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | AATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGATCCAAGCCCCGTGCGTaGCAGTGGGCAATGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: NGFIDSFFLGSSRQCLAGSKPRA*QWAMSS Trigger: TGAGCTCATTGCCCACTGTCACGCACGGGGCTTGGA...TCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | GATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGGGATGCGGGAAGGATTaGTGCTTTTGGGGATGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: DSFFLGSSRQCLAGELKGGCGKD*CFWGCR Trigger: TCTGCATCCCCAAAAGCATCAATCCTTCCCGCATCC...CCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CCA 90 bp | ATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAACTGGCTCATCAGGATaGCGCCAAGCACGGTCAGAG | + |
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Preference number: 4 (lower is better) Translates to: IDSFFLGSSRQCLAGELKTGSSG*RQARSE Trigger: CTCTGACCGTGCTTGGCGCCATCCTGATGAGCCAGT...TTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | GGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAAATGGCTGCTTTCACCTaGCCAGGCTCACTCTTCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GFIDSFFLGSSRQCLAGEMAAFT*PGSLFH Trigger: ATGGAAGAGTGAGCCTGGTCAGGTGAAAGCAGCCAT...TTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | ATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAACAATCTGCCGACTGTTaGAGTTGGACAAGCCCAGGG | + |
|
Preference number: 4 (lower is better) Translates to: IDSFFLGSSRQCLAGELKQSADC*SWTSPG Trigger: CCCTGGGCTTGTCCAACTTCAACAGTCGGCAGATTG...TTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | TTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGATCTTCTGTCCAGTGTaGAGGAGGACACTGGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: FIDSFFLGSSRQCLAGELIFCPV*RRTLEA Trigger: GGCCTCCAGTGTCCTCCTGCACACTGGACAGAAGAT...CAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | AATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGATTTCACCAGCCCCTTTaGCACCAGTACCTCCAGAGC | + |
|
Preference number: 4 (lower is better) Translates to: NGFIDSFFLGSSRQCLAGFHQPL*HQYLQS Trigger: GCTCTGGAGGTACTGGTGGCAAAGGGGCTGGTGAAA...TCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR TCA 90 bp | GGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACAGATCACTTTCCGCTaGACCTGCCATCTAAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GFIDSFFLGSSRQCLAGEQITFR*TCHLSK Trigger: CTTGCTTAGATGGCAGGTTCAGCGGAAAGTGATCTG...TTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | GGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAAGGCATGTTTAATGGCTaGTTTCACCTGACCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: GFIDSFFLGSSRQCLAGEGMFNG*FHLTRL Trigger: GAGCCTGGTCAGGTGAAAGCAGCCATTAAACATGCC...TTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CCA 90 bp | ATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAATTCTTCAAGCAGGACTaGCTCATCAGGATGGCGCCA | + |
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Preference number: 4 (lower is better) Translates to: IDSFFLGSSRQCLAGELKFFKQD*LIRMAP Trigger: TGGCGCCATCCTGATGAGCCAGTCCTGCTTGAAGAA...TTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CCA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGGTGTCCAGCATCTCTaGGAACCCTCTTCCCATCCA | + |
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Preference number: 4 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLGVQHL*EPSSHP Trigger: TGGATGGGAAGAGGGTTCCCAGAGATGCTGGACACC...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | ATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAACATCCTCAGGGTGGTaGTTAGTATTCCACAGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: IDSFFLGSSRQCLAGELKTSSGW*LVFHSL Trigger: CAAGCTGTGGAATACTAAGCACCACCCTGAGGATGT...TTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CCA 90 bp | TTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGATTCTGAGCCAGGTATaGATGGCATTCCACCTGCAA | + |
|
Preference number: 4 (lower is better) Translates to: FIDSFFLGSSRQCLAGELILSQV*MAFHLQ Trigger: TTGCAGGTGGAATGCCATCCATACCTGGCTCAGAAT...CAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CCA 90 bp | GGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAAAAGCAAGATCTGAGCTaGAGATCGGCCATGTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: GFIDSFFLGSSRQCLAGEKQDLS*RSAMFF Trigger: GAAAAACATGGCCGATCTCCAGCTCAGATCTTGCTT...TTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | AATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGATCCAAATACTCCAGTTaGAGATCAGCCAGTGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NGFIDSFFLGSSRQCLAGSKYSS*RSASVF Trigger: GAAGACACTGGCTGATCTGCAACTGGAGTATTTGGA...TCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | TTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAAGGACATCATCAATCTaGCGACTGTTGAAGTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: FNGFIDSFFLGSSRQCLARTSSI*RLLKLD Trigger: GTCCAACTTCAACAGTCGGCAGATTGATGATGTCCT...TGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR GCA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTACAATCTCAGTTTCATTaGCATATACAGAAGCACAAT | + |
|
Preference number: 4 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLQSQFH*HIQKHN Trigger: ATTGTGCTTCTGTATATGGCAATGAAACTGAGATTG...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS GCA 90 bp | GTCAGAGGAACCCAAGGGGCTATAAGCAGTCACCTCCAAGCCCCGTaGGTGACAGTGGGCAATGAGCTCATTCTGAGCCAGGTATGGATG | + |
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Preference number: 5 (lower is better) Translates to: VRGTQGAISSHLQAP*VTVGNELILSQVWM Trigger: CATCCATACCTGGCTCAGAATGAGCTCATTGCCCACTGTCACGCACGGGGCTTGGAGGTGACTGCTTATAGCCCCTTGGGTTCCTCTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS TCA 90 bp | GGCTATAAGCAGTCACCTCCAAGCCCCGTGCGTGACAGTGGGCAATaGGCTCATTCTGAGCCAGGTATGGATGGCATTCCACCTGCAAGA | + |
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Preference number: 5 (lower is better) Translates to: GYKQSPPSPVRDSGQ*AHSEPGMDGIPPAR Trigger: TCTTGCAGGTGGAATGCCATCCATACCTGGCTCAGAATGAGCTCATTGCCCACTGTCACGCACGGGGCTTGGAGGTGACTGCTTATAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS GCA 90 bp | TCAGCCAGTGTCTTCCGGAGGGCAGGTTCTACATCCTCAGGGTGGTaGTTAGTATTCCACAGCTTGGATGTCACAAACAGCTCCTCTCGA | + |
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Preference number: 5 (lower is better) Translates to: SASVFRRAGSTSSGW*LVFHSLDVTNSSSR Trigger: TCGAGAGGAGCTGTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCTCCGGAAGACACTGGCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CCA 90 bp | AGATCAGCCAGTGTCTTCCGGAGGGCAGGTTCTACATCCTCAGGGTaGTGCTTAGTATTCCACAGCTTGGATGTCACAAACAGCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: RSASVFRRAGSTSSG*CLVFHSLDVTNSSS Trigger: AGAGGAGCTGTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCTCCGGAAGACACTGGCTGATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS-3UTR CAA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTATCTCGAGGGACTGCCTaGCCTGACCCCACACTCTCC | + |
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Preference number: 5 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLSRGTA*PDPTLS Trigger: GGAGAGTGTGGGGTCAGGCAAGGCAGTCCCTCGAGA...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | GATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGAGGATGCGGGAAGGATaGATGCTTTTGGGGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: DSFFLGSSRQCLAGELKGRMREG*MLLGMQ Trigger: CTGCATCCCCAAAAGCATCAATCCTTCCCGCATCCT...CCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS TCA 90 bp | CCTCCAGAGCCTTCCAGGTCTCTTTATAGTGAGTTGAGTCATATCTaGCAGTTCCATCGGCATTCTTGGGAAAGGGATTGTCTCCCCGCT | + |
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Preference number: 5 (lower is better) Translates to: PPEPSRSLYSELSHI*QFHRHSWERDCLPA Trigger: AGCGGGGAGACAATCCCTTTCCCAAGAATGCCGATGGAACTGTCAGATATGACTCAACTCACTATAAAGAGACCTGGAAGGCTCTGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS GCA 90 bp | AGTTTCATTGCCATATACAGAAGCACAATCAATGTGGCGGTAGCCTaGGCTAAGGGCATGTTTAATGGCTGCTTTCACCTGACCAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: SFIAIYRSTINVAVA*AKGMFNGCFHLTRL Trigger: GAGCCTGGTCAGGTGAAAGCAGCCATTAAACATGCCCTTAGCGCAGGCTACCGCCACATTGATTGTGCTTCTGTATATGGCAATGAAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS TCA 90 bp | TGCCACCAGTACCTCCAGAGCCTTCCAGGTCTCTTTATAGTGAGTTaGGTCATATCTGACAGTTCCATCGGCATTCTTGGGAAAGGGATT | + |
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Preference number: 5 (lower is better) Translates to: CHQYLQSLPGLFIVS*VISDSSIGILGKGI Trigger: AATCCCTTTCCCAAGAATGCCGATGGAACTGTCAGATATGACTCAACTCACTATAAAGAGACCTGGAAGGCTCTGGAGGTACTGGTGGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS-3UTR CAA 90 bp | GATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGAACTGAAAGGGTTAGTATTCCACAGCTaGGATGTCACAAACAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: DSFFLGSSRQCLAGELKGLVFHS*DVTNSS Trigger: GGAGCTGTTTGTGACATCCAAGCTGTGGAATACTAA...CCCTTTCAGTTCTCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | AATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCAGGAGTTCCATCGGCATTCTaGGGAAAGGGATTGTCTCCC | + |
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Preference number: 5 (lower is better) Translates to: NGFIDSFFLGSSRQCLAGVPSAF*GKGLSP Trigger: GGGAGACAATCCCTTTCCCAAGAATGCCGATGGAAC...TCCTGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | TTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGCATGCCGACTGTTGAAGTaGGACAAGCCCAGGGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: FNGFIDSFFLGSSRQCLACRLLK*DKPRAF Trigger: GAAAGCCCTGGGCTTGTCCAACTTCAACAGTCGGCA...TGCTAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTATCAATCTGCCGACTGTaGAAGTTGGACAAGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLSICRL*KLDKPR Trigger: CCTGGGCTTGTCCAACTTCAACAGTCGGCAGATTGA...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTAGAAGGATTGATGCTTTaGGGGATGCAGATCACTTTC | + |
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Preference number: 5 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLEGLML*GMQITF Trigger: GAAAGTGATCTGCATCCCCAAAAGCATCAATCCTTC...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS-3UTR CAA 90 bp | CACTTCAATGGCTTTATTGATTCCTTCTTTCTGGGGAGTAGCAGGCAATGCTTACCAATCTCAGTTTCATaGCCATATACAGAAGCACAA | + |
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Preference number: 5 (lower is better) Translates to: HFNGFIDSFFLGSSRQCLPISVS*PYTEAQ Trigger: TTGTGCTTCTGTATATGGCAATGAAACTGAGATTGG...TAAGCATTGCCTGCTACTCCCCAGAAAGAAGGAATCAATAAAGCCATTGAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS GCA 72 bp | ACCCAAGGGGCTATAAGCAGTCACCTCCAAGCCCCGTaGGTGACAGTGGGCAATGAGCTCATTCTGAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: TQGAISSHLQAP*VTVGNELILSQ Trigger: CTGGCTCAGAATGAGCTCATTGCCCACTGTCACGCACGGGGCTTGGAGGTGACTGCTTATAGCCCCTTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS GCA 72 bp | GGGCGCACAGAGGCCACACTGAGGACATCATCAATCTaGCGACTGTTGAAGTTGGACAAGCCCAGGGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: GRTEATLRTSSI*RLLKLDKPRAF Trigger: GAAAGCCCTGGGCTTGTCCAACTTCAACAGTCGGCAGATTGATGATGTCCTCAGTGTGGCCTCTGTGCGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CCA 72 bp | GTGACAGTGGGCAATGAGCTCATTCTGAGCCAGGTATaGATGGCATTCCACCTGCAAGACAGCTGGGCGCAC | + |
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Preference number: 6 (lower is better) Translates to: VTVGNELILSQV*MAFHLQDSWAH Trigger: GTGCGCCCAGCTGTCTTGCAGGTGGAATGCCATCCATACCTGGCTCAGAATGAGCTCATTGCCCACTGTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CCA 72 bp | ACTACTGGTTCTTCAAGCAGGACTGGCTCATCAGGATaGCGCCAAGCACGGTCAGAGGAACCCAAGGGGCTA | + |
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Preference number: 6 (lower is better) Translates to: TTGSSSRTGSSG*RQARSEEPKGL Trigger: TAGCCCCTTGGGTTCCTCTGACCGTGCTTGGCGCCATCCTGATGAGCCAGTCCTGCTTGAAGAACCAGTAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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| CDS CAA 90 bp | AGGGCAGGTTCTACATCCTCAGGGTGGTGCTTAGTATTCCACAGCTaGGATGTCACAAACAGCTCCTCTCGAGGGACTGCCTTGCCTGAC | + |
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Preference number: 6 (lower is better) Translates to: RAGSTSSGWCLVFHS*DVTNSSSRGTALPD Trigger: GTCAGGCAAGGCAGTCCCTCGAGAGGAGCTGTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS GCA 72 bp | GTCTTCCGGAGGGCAGGTTCTACATCCTCAGGGTGGTaGTTAGTATTCCACAGCTTGGATGTCACAAACAGC | + |
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Preference number: 6 (lower is better) Translates to: VFRRAGSTSSGW*LVFHSLDVTNS Trigger: GCTGTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCTCCGGAAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CCA 72 bp | AGTGTCTTCCGGAGGGCAGGTTCTACATCCTCAGGGTaGTGCTTAGTATTCCACAGCTTGGATGTCACAAAC | + |
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Preference number: 6 (lower is better) Translates to: SVFRRAGSTSSG*CLVFHSLDVTN Trigger: GTTTGTGACATCCAAGCTGTGGAATACTAAGCACCACCCTGAGGATGTAGAACCTGCCCTCCGGAAGACACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CAA 90 bp | AAAGGCATAAGGCCAGTGCATCAAATAGAGGTCCAAATACTCCAGTaGCAGATCAGCCAGTGTCTTCCGGAGGGCAGGTTCTACATCCTC | + |
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Preference number: 6 (lower is better) Translates to: KGIRPVHQIEVQILQ*QISQCLPEGRFYIL Trigger: GAGGATGTAGAACCTGCCCTCCGGAAGACACTGGCTGATCTGCAACTGGAGTATTTGGACCTCTATTTGATGCACTGGCCTTATGCCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS GCA 72 bp | GCCATATACAGAAGCACAATCAATGTGGCGGTAGCCTaGGCTAAGGGCATGTTTAATGGCTGCTTTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: AIYRSTINVAVA*AKGMFNGCFHL Trigger: CAGGTGAAAGCAGCCATTAAACATGCCCTTAGCGCAGGCTACCGCCACATTGATTGTGCTTCTGTATATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS TCA 72 bp | TACCTCCAGAGCCTTCCAGGTCTCTTTATAGTGAGTTaGGTCATATCTGACAGTTCCATCGGCATTCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: YLQSLPGLFIVS*VISDSSIGILG Trigger: CCCAAGAATGCCGATGGAACTGTCAGATATGACTCAACTCACTATAAAGAGACCTGGAAGGCTCTGGAGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030455.15 ENSMUST00000128059.2 |
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| CDS CAA 72 bp | TCCACCGTAATCATGGGCACAATATACCGCCAATTTTaGTTCAGAGCATCTAATTGTTTCATCTCCTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: STVIMGTIYRQF*FRASNCFISSG Trigger: CCCAGAGGAGATGAAACAATTAGATGCTCTGAACAAAAATTGGCGGTATATTGTGCCCATGATTACGGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030455.15 |
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