RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AKP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036500

Ensembl transcript IDs: ENSMUST00000044878.4

Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp CCAGCAGCGCCAGAGCCAGCGGGGCGGTGGCTGGGCCCAGGCTTCTaGCGCTGTTATGGACCGGGGTGGTTGTGGTGGTGGTGGTGGTGG +
Preference number: 5 (lower is better)
Translates to: PAAPEPAGRWLGPGF*RCYGPGWLWWWWWW
Trigger: CCACCACCACCACCACCACAACCACCCCGGTCCATAACAGCGCCAGAAGCCTGGGCCCAGCCACCGCCCCGCTGGCTCTGGCGCTGCTGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 90 bp AGAGCCAGCGGGGCGGTGGCTGGGCCCAGGCTTCTGGCGCTGTTATaGACCGGGGTGGTTGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG +
Preference number: 5 (lower is better)
Translates to: RASGAVAGPRLLALL*TGVVVVVVVVVVVV
Trigger: CACCACCACCACCACCACCACCACCACCACAACCACCCCGGTCCATAACAGCGCCAGAAGCCTGGGCCCAGCCACCGCCCCGCTGGCTCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 90 bp GTAGCATCAGCATTCCGGCCAGCAGCGCCAGAGCCAGCGGGGCGGTaGCTGGGCCCAGGCTTCTGGCGCTGTTATGGACCGGGGTGGTTG +
Preference number: 5 (lower is better)
Translates to: VASAFRPAAPEPAGR*LGPGFWRCYGPGWL
Trigger: CAACCACCCCGGTCCATAACAGCGCCAGAAGCCTGGGCCCAGCCACCGCCCCGCTGGCTCTGGCGCTGCTGGCCGGAATGCTGATGCTAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS GCA 90 bp TGGCACGGTACATCACTGAGAAGACCTCATTGCCAAATGTGGTGTTaGACTGGTCGAATCTCGCGGCTGCGCTCACGCCGATGGTCTTGT +
Preference number: 5 (lower is better)
Translates to: WHGTSLRRPHCQMWC*TGRISRLRSRRWSC
Trigger: ACAAGACCATCGGCGTGAGCGCAGCCGCGAGATTCGACCAGTGCAACACCACATTTGGCAATGAGGTCTTCTCAGTGATGTACCGTGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 90 bp TGGTCAGCAGTGACTATGGTCAGAGTGTCGCGTTCACTAGTGAGCTaGCTGGCCCTCTCGATGGCTAAGTCGAACATCACAGCCTCAGTC +
Preference number: 5 (lower is better)
Translates to: WSAVTMVRVSRSLVS*LALSMAKSNITASV
Trigger: GACTGAGGCTGTGATGTTCGACTTAGCCATCGAGAGGGCCAGCCAGCTCACTAGTGAACGCGACACTCTGACCATAGTCACTGCTGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 72 bp GCATTCCGGCCAGCAGCGCCAGAGCCAGCGGGGCGGTaGCTGGGCCCAGGCTTCTGGCGCTGTTATGGACCG +
Preference number: 6 (lower is better)
Translates to: AFRPAAPEPAGR*LGPGFWRCYGP
Trigger: CGGTCCATAACAGCGCCAGAAGCCTGGGCCCAGCCACCGCCCCGCTGGCTCTGGCGCTGCTGGCCGGAATGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 72 bp ACTGAGAAGACCTCATTGCCAAATGTGGTGTTGCACTaGTCGAATCTCGCGGCTGCGCTCACGCCGATGGTC +
Preference number: 6 (lower is better)
Translates to: TEKTSLPNVVLH*SNLAAALTPMV
Trigger: GACCATCGGCGTGAGCGCAGCCGCGAGATTCGACCAGTGCAACACCACATTTGGCAATGAGGTCTTCTCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CAA 90 bp TTGGCACGGTACATCACTGAGAAGACCTCATTGCCAAATGTGGTGTaGCACTGGTCGAATCTCGCGGCTGCGCTCACGCCGATGGTCTTG +
Preference number: 6 (lower is better)
Translates to: LARYITEKTSLPNVV*HWSNLAAALTPMVL
Trigger: CAAGACCATCGGCGTGAGCGCAGCCGCGAGATTCGACCAGTGCAACACCACATTTGGCAATGAGGTCTTCTCAGTGATGTACCGTGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS GCA 72 bp ACATCACTGAGAAGACCTCATTGCCAAATGTGGTGTTaGACTGGTCGAATCTCGCGGCTGCGCTCACGCCGA +
Preference number: 6 (lower is better)
Translates to: TSLRRPHCQMWC*TGRISRLRSRR
Trigger: TCGGCGTGAGCGCAGCCGCGAGATTCGACCAGTGCAACACCACATTTGGCAATGAGGTCTTCTCAGTGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CAA 72 bp TACATCACTGAGAAGACCTCATTGCCAAATGTGGTGTaGCACTGGTCGAATCTCGCGGCTGCGCTCACGCCG +
Preference number: 6 (lower is better)
Translates to: YITEKTSLPNVV*HWSNLAAALTP
Trigger: CGGCGTGAGCGCAGCCGCGAGATTCGACCAGTGCAACACCACATTTGGCAATGAGGTCTTCTCAGTGATGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS CCA 72 bp GCCATCCAATCTGGTTCCAGTCTCATTAGCATCATTTaGATACTCGGGGTCTGGGGTTCCAGCAGGAAACAT +
Preference number: 6 (lower is better)
Translates to: AIQSGSSLISII*ILGVWGSSRKH
Trigger: ATGTTTCCTGCTGGAACCCCAGACCCCGAGTATCCAAATGATGCTAATGAGACTGGAACCAGATTGGATGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4
CDS TCA 72 bp TATCAAATTTTGTGTCTACAGGCTCAAAGAGGCCCATaGGGTATGTCACTGACGGATCCTGGGCCTTCTGAA +
Preference number: 6 (lower is better)
Translates to: YQILCLQAQRGP*GMSLTDPGPSE
Trigger: TTCAGAAGGCCCAGGATCCGTCAGTGACATACCTCATGGGCCTCTTTGAGCCTGTAGACACAAAATTTGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044878.4