Pregenerated sensors for AKIRIN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023075Ensembl transcript IDs: ENSMUST00000102636.4
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GATAGGCCTTGGGGTGAGCAGCCTTCAAGTCTCGGCAGCCCCACATaGCTTTACCCACCACACACAGCCATTACTATGGCTCCTCTTCAG | + |
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Preference number: 1 (lower is better) Translates to: DRPWGEQPSSLGSPT*LYPPHTAITMAPLQ Trigger: CTGAAGAGGAGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTGGGGCTGCCGAGACTTGAAGGCTGCTCACCCCAAGGCCTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR CCA 90 bp | TCGGCAGCCCCACATGCCTTTACCCACCACACACAGCCATTACTATaGCTCCTCTTCAGGGAACAAGGAACTACGCTGGAGAAAGAAGCG | + |
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Preference number: 1 (lower is better) Translates to: SAAPHAFTHHTQPLL*LLFREQGTTLEKEA Trigger: CGCTTCTTTCTCCAGCGTAGTTCCTTGTTCCCTGAAGAGGAGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTGGGGCTGCCGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 90 bp | CACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTaGTTGCTAGCAGTTGAGGTGTCAGGACTGTTCATCATGAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: HSVAPEDNLKTACRH*LLAVEVSGLFIMKA Trigger: GGCTTTCATGATGAACAGTCCTGACACCTCAACTGCTAGCAAGCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 90 bp | GGACCAAGGCAGAGAACAGCCAATAAGCAACTTCAGGCAGGGTATTaGCAAAACCAAGCTCTAAGGGTTGAACACGGACACCTCAGGAGA | + |
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Preference number: 1 (lower is better) Translates to: GPRQRTANKQLQAGY*QNQALRVEHGHLRR Trigger: TCTCCTGAGGTGTCCGTGTTCAACCCTTAGAGCTTGGTTTTGGCAATACCCTGCCTGAAGTTGCTTATTGGCTGTTCTCTGCCTTGGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 90 bp | CTGTTCATCATGAAAGCCACTTGTAGCCAGAAGCCACTGACGGAATaGTTTCTAAGGAAGCACAGCACCATGGTGTCTGATAGGCCTTGG | + |
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Preference number: 1 (lower is better) Translates to: LFIMKATCSQKPLTE*FLRKHSTMVSDRPW Trigger: CCAAGGCCTATCAGACACCATGGTGCTGTGCTTCCTTAGAAAGCATTCCGTCAGTGGCTTCTGGCTACAAGTGGCTTTCATGATGAACAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 90 bp | ATATACAGGGGCTCCTGTACTCACATAGTTCAGGCTGGCCTTGAATaGAATGTAGCCAAGGATGACCTTGAACTTCAAAGACCCACAGGC | + |
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Preference number: 1 (lower is better) Translates to: IYRGSCTHIVQAGLE*NVAKDDLELQRPTG Trigger: GCCTGTGGGTCTTTGAAGTTCAAGGTCATCCTTGGCTACATTGCATTCAAGGCCAGCCTGAACTATGTGAGTACAGGAGCCCCTGTATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR TCA 90 bp | TCTCCAACAGGCTGTGGAACTGTGGGAATGGTTATAGCAGCCTTATaGGAGTTATCTGAACTAATACACATCATCACAGCATCAAGAAGG | + |
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Preference number: 1 (lower is better) Translates to: SPTGCGTVGMVIAAL*ELSELIHIITASRR Trigger: CCTTCTTGATGCTGTGATGATGTGTATTAGTTCAGATAACTCTCATAAGGCTGCTATAACCATTCCCACAGTTCCACAGCCTGTTGGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR TCA 90 bp | CACATGCCTTTACCCACCACACACAGCCATTACTATGGCTCCTCTTCAGGGAACCAGGTAGCAGTGCTGTaGGCCTGGCCCAGCCCCGCA | + |
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Preference number: 2 (lower is better) Translates to: HMPLPTTHSHYYGSSSGNQVAVL*AWPSPA Trigger: TGCGGGGCTGGGCCAGGCTCACAGCACTGCTACCTG...GTTCCCTGAAGAGGAGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR GCA 90 bp | ACCATGGTGTCTGATAGGCCTTGGGGTGAGCAGCCTTCAAGTCTCGGCAGCCCCTTCTCACCACGTATTTaGAGATTCAGGACTGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: TMVSDRPWGEQPSSLGSPFSPRI*RFRTAD Trigger: GTCTGCAGTCCTGAATCTGCAAATACGTGGTGAGAA...GGGGCTGCCGAGACTTGAAGGCTGCTCACCCCAAGGCCTATCAGACACCATGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR GCA 90 bp | GTATCACACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTGCACAGAGGCTGCTTTCTaGTCACAGCCTTGGGACCAA | + |
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Preference number: 2 (lower is better) Translates to: VSHSVAPEDNLKTACRHCTEAAF*SQPWDQ Trigger: TTGGTCCCAAGGCTGTGAGCAGAAAGCAGCCTCTGT...GCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTGTGATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR TCA 90 bp | GTATCACACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTGCTGGAGAAAGAAGCGATaGAACAAACTGTCCTTTAAG | + |
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Preference number: 2 (lower is better) Translates to: VSHSVAPEDNLKTACRHCWRKKR*NKLSFK Trigger: CTTAAAGGACAGTTTGTTTCATCGCTTCTTTCTCCA...GCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTGTGATAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR GCA 90 bp | CAGGATTTCCATAGGACAATGGAATTTCCCTACCTGGGAAGTACCCTTAAGTTCCATTCTTTGCTAGACTaGTGTTCCAGGTACTTTGTC | + |
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Preference number: 2 (lower is better) Translates to: QDFHRTMEFPYLGSTLKFHSLLD*CSRYFV Trigger: GACAAAGTACCTGGAACAGCAGTCTAGCAAAGAATG...GAACTTAAGGGTACTTCCCAGGTAGGGAAATTCCATTGTCCTATGGAAATCCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 72 bp | TGGGGTGAGCAGCCTTCAAGTCTCGGCAGCCCCACATaGCTTTACCCACCACACACAGCCATTACTATGGCT | + |
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Preference number: 3 (lower is better) Translates to: WGEQPSSLGSPT*LYPPHTAITMA Trigger: AGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTGGGGCTGCCGAGACTTGAAGGCTGCTCACCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 72 bp | CACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTaGAGGCACTGCTTGCTAGCAGTTGAGGTGTCAGGA | + |
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Preference number: 3 (lower is better) Translates to: HSVAPEDNLKTA*RHCLLAVEVSG Trigger: TCCTGACACCTCAACTGCTAGCAAGCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR CAA 90 bp | AAGAGCACTGGTGGGCTCTCAGAGTCTGTAAATCTCCAACAGGCTGTGGAACTGCTCACAGAGCTGTGCTaGGGGAGACTCCACGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: KSTGGLSESVNLQQAVELLTELC*GRLHVL Trigger: CAACACGTGGAGTCTCCCCAAGCACAGCTCTGTGAG...CAGTTCCACAGCCTGTTGGAGATTTACAGACTCTGAGAGCCCACCAGTGCTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 72 bp | GCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTaGTTGCTAGCAGTTGAGGTGTCAGGACTGTTCATC | + |
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Preference number: 3 (lower is better) Translates to: APEDNLKTACRH*LLAVEVSGLFI Trigger: GATGAACAGTCCTGACACCTCAACTGCTAGCAAGCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR CCA 72 bp | CCACATGCCTTTACCCACCACACACAGCCATTACTATaGCTCCTCTTCAGGGAACAAGGAACTACGCTGGAG | + |
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Preference number: 3 (lower is better) Translates to: PHAFTHHTQPLL*LLFREQGTTLE Trigger: CTCCAGCGTAGTTCCTTGTTCCCTGAAGAGGAGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR CAA 90 bp | GTATCACACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTGCACTTCAGGCAGGGTATaGCCAAAACCAAGCTCTAAG | + |
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Preference number: 3 (lower is better) Translates to: VSHSVAPEDNLKTACRHCTSGRV*PKPSSK Trigger: CTTAGAGCTTGGTTTTGGCAATACCCTGCCTGAAGT...GCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTGTGATAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR CAA 90 bp | CACATGCCTTTACCCACCACACACAGCCATTACTATGGCTCCTCTTCAGGGAACTTTCTGCTCACAGCCTaGGGACCAAGGCAGAGAACA | + |
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Preference number: 3 (lower is better) Translates to: HMPLPTTHSHYYGSSSGNFLLTA*GPRQRT Trigger: TGTTCTCTGCCTTGGTCCCAAGGCTGTGAGCAGAAA...GTTCCCTGAAGAGGAGCCATAGTAATGGCTGTGTGTGGTGGGTAAAGGCATGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR CCA 72 bp | GCTCTAAGGGTTGAACACGGACACCTCAGGAGAGTTTaGGGTAACCTGGACAAAGGGTCCAGATTCTATGTT | + |
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Preference number: 3 (lower is better) Translates to: ALRVEHGHLRRV*GNLDKGSRFYV Trigger: AACATAGAATCTGGACCCTTTGTCCAGGTTACCCCAAACTCTCCTGAGGTGTCCGTGTTCAACCCTTAGAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR-3UTR CAA 90 bp | GGGAGATCTTTTCCCTGTAGAAGTTCAGCGTTCAGGGAGCTCCGTGACTGTATGGCTGTTCCAGGTACTTaGTCTGGAAAACCTATCACA | + |
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Preference number: 3 (lower is better) Translates to: GRSFPCRSSAFRELRDCMAVPGT*SGKPIT Trigger: TGTGATAGGTTTTCCAGACAAAGTACCTGGAACAGC...CATACAGTCACGGAGCTCCCTGAACGCTGAACTTCTACAGGGAAAAGATCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 72 bp | CAGAGAACAGCCAATAAGCAACTTCAGGCAGGGTATTaGCAAAACCAAGCTCTAAGGGTTGAACACGGACAC | + |
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Preference number: 3 (lower is better) Translates to: QRTANKQLQAGY*QNQALRVEHGH Trigger: GTGTCCGTGTTCAACCCTTAGAGCTTGGTTTTGGCAATACCCTGCCTGAAGTTGCTTATTGGCTGTTCTCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR GCA 72 bp | ATGAAAGCCACTTGTAGCCAGAAGCCACTGACGGAATaGTTTCTAAGGAAGCACAGCACCATGGTGTCTGAT | + |
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Preference number: 3 (lower is better) Translates to: MKATCSQKPLTE*FLRKHSTMVSD Trigger: ATCAGACACCATGGTGCTGTGCTTCCTTAGAAAGCATTCCGTCAGTGGCTTCTGGCTACAAGTGGCTTTCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR CCA 72 bp | GTCAGGATTTCCATAGGACAATGGAATTTCCCTACCTaGGAAGTACCCTTAAGTTCTAGCCCTAGAAGTCAA | + |
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Preference number: 3 (lower is better) Translates to: VRISIGQWNFPT*EVPLSSSPRSQ Trigger: TTGACTTCTAGGGCTAGAACTTAAGGGTACTTCCCAGGTAGGGAAATTCCATTGTCCTATGGAAATCCTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR TCA 72 bp | GGCTGTGGAACTGTGGGAATGGTTATAGCAGCCTTATaGGAGTTATCTGAACTAATACACATCATCACAGCA | + |
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Preference number: 3 (lower is better) Translates to: GCGTVGMVIAAL*ELSELIHIITA Trigger: TGCTGTGATGATGTGTATTAGTTCAGATAACTCTCATAAGGCTGCTATAACCATTCCCACAGTTCCACAGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR TCA 72 bp | TCAGGGAACAAGGAACTACGCTGGAGAAAGAAGCGATaGAACAAACTGTCCTTTAAGCAAGTCAGTCATTCT | + |
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Preference number: 3 (lower is better) Translates to: SGNKELRWRKKR*NKLSFKQVSHS Trigger: AGAATGACTGACTTGCTTAAAGGACAGTTTGTTTCATCGCTTCTTTCTCCAGCGTAGTTCCTTGTTCCCTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| 3UTR TCA 72 bp | TGTGGGAATGGTTATAGCAGCCTTATGAGAGTTATCTaGACTAATACACATCATCACAGCATCAAGAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: CGNGYSSLMRVI*TNTHHHSIKKA Trigger: TGCCTTCTTGATGCTGTGATGATGTGTATTAGTTCAGATAACTCTCATAAGGCTGCTATAACCATTCCCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR TCA 90 bp | AAGAGCACTGGTGGGCTCTCAGAGTCTGTAAATCTCCAACAGGCTGTGGAACTGGGCGGCGTCTGCATCTaGAGCGGCGGCGGCTCGGCG | + |
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Preference number: 4 (lower is better) Translates to: KSTGGLSESVNLQQAVELGGVCI*SGGGSA Trigger: CGCCGAGCCGCCGCCGCTTCAGATGCAGACGCCGCC...CAGTTCCACAGCCTGTTGGAGATTTACAGACTCTGAGAGCCCACCAGTGCTCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR CCA 90 bp | GTATCACACTCAGTGGCCCCAGAGGATAACCTAAAGACAGCCTGCAGGCACTGCACGCTCGCTGCCGGGTaGGGCAGGCTGCTGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: VSHSVAPEDNLKTACRHCTLAAG*GRLLEA Trigger: AGCCTCCAGCAGCCTGCCCCACCCGGCAGCGAGCGT...GCAGTGCCTGCAGGCTGTCTTTAGGTTATCCTCTGGGGCCACTGAGTGTGATAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR TCA 90 bp | GGGAGATCTTTTCCCTGTAGAAGTTCAGCGTTCAGGGAGCTCCGTGACTGTATGGGAAGGCTGAGTTTCTaGAGTACAGGCTTCGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: GRSFPCRSSAFRELRDCMGRLSF*STGFAL Trigger: CAAAGCGAAGCCTGTACTTCAGAAACTCAGCCTTCC...CATACAGTCACGGAGCTCCCTGAACGCTGAACTTCTACAGGGAAAAGATCTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR TCA 90 bp | CAAGGCAGAGAACAGCCAATAAGCAACTTCAGGCAGGGTATTGCCAAAACCAAGGCCGAGGAGGAAGGCTaGGTTTCTGAAGTACAGGCT | + |
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Preference number: 4 (lower is better) Translates to: QGREQPISNFRQGIAKTKAEEEG*VSEVQA Trigger: AGCCTGTACTTCAGAAACTCAGCCTTCCTCCTCGGC...CTTGGTTTTGGCAATACCCTGCCTGAAGTTGCTTATTGGCTGTTCTCTGCCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR CCA 90 bp | AAGAGCACTGGTGGGCTCTCAGAGTCTGTAAATCTCCAACAGGCTGTGGAACTGCATCCAGAAAGCACCTaGAGAACCTGGTGCAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: KSTGGLSESVNLQQAVELHPEST*RTWCSK Trigger: CTTACTGCACCAGGTTCTCCAGGTGCTTTCTGGATG...CAGTTCCACAGCCTGTTGGAGATTTACAGACTCTGAGAGCCCACCAGTGCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR TCA 90 bp | TTCTGCTCACAGCCTTGGGACCAAGGCAGAGAACAGCCAATAAGCAACTTCAGGGTACAGGCTTCGCTTTaGCTGAGAACAACTTCTAAA | + |
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Preference number: 4 (lower is better) Translates to: FCSQPWDQGREQPISNFRVQASL*LRTTSK Trigger: TTTAGAAGTTGTTCTCAGTCAAAGCGAAGCCTGTAC...CCTGAAGTTGCTTATTGGCTGTTCTCTGCCTTGGTCCCAAGGCTGTGAGCAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR CAA 90 bp | TTCTGCTCACAGCCTTGGGACCAAGGCAGAGAACAGCCAATAAGCAACTTCAGGTATGTTCTGAAAAATTaGCTCGGGAGTTGGAAGACG | + |
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Preference number: 5 (lower is better) Translates to: FCSQPWDQGREQPISNFRYVLKN*LGSWKT Trigger: CGTCTTCCAACTCCCGAGCAAATTTTTCAGAACATA...CCTGAAGTTGCTTATTGGCTGTTCTCTGCCTTGGTCCCAAGGCTGTGAGCAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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| CDS-3UTR CAA 90 bp | CAGGATTTCCATAGGACAATGGAATTTCCCTACCTGGGAAGTACCCTTAAGTTCAGGATACATAGCTTGTaGGCCTTGTCCCGTATCGCC | + |
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Preference number: 5 (lower is better) Translates to: QDFHRTMEFPYLGSTLKFRIHSL*ALSRIA Trigger: GGCGATACGGGACAAGGCCAACAAGCTATGTATCCT...GAACTTAAGGGTACTTCCCAGGTAGGGAAATTCCATTGTCCTATGGAAATCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102636.4 |
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