Pregenerated sensors for AKIP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031023Ensembl transcript IDs: ENSMUST00000033335.6, ENSMUST00000143581.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGCACTGGAGCCCACAGTaGCAGAATAGGTCCCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: RSTPVQKGCPTTASIKIKHWSPQ*QNRSLG Trigger: ACCCAGGGACCTATTCTGTCACTGTGGGCTCCAGTG...CTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR GCA 90 bp | TTAACACTTACTTGGGAAGCCAGCAGTAAAAGCTGCTCAGACAGCACCATTACAAGAATGCCAGTCCACTaGCCTCCTCTTGGCGCGCTC | + |
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Preference number: 4 (lower is better) Translates to: LTLTWEASSKSCSDSTITRMPVH*PPLGAL Trigger: GAGCGCGCCAAGAGGAGGGCAGTGGACTGGCATTCT...TGTAATGGTGCTGTCTGAGCAGCTTTTACTGCTGGCTTCCCAAGTAAGTGTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR CCA 90 bp | TTAACACTTACTTGGGAAGCCAGCAGTAAAAGCTGCTCAGACAGCACCATTACACCACTGCCCTCCTCTTaGCGCGCTCCAATACTTCCC | + |
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Preference number: 4 (lower is better) Translates to: LTLTWEASSKSCSDSTITPLPSS*RAPILP Trigger: GGGAAGTATTGGAGCGCGCCAAGAGGAGGGCAGTGG...TGTAATGGTGCTGTCTGAGCAGCTTTTACTGCTGGCTTCCCAAGTAAGTGTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR TCA 90 bp | AGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGCAGTTTCTTTGTTCCTaGCTGTGCCCAGTATCTGAG | + |
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Preference number: 4 (lower is better) Translates to: RSTPVQKGCPTTASIKIKQFLCS*LCPVSE Trigger: CTCAGATACTGGGCACAGTCAGGAACAAAGAAACTG...CTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR TCA 90 bp | AGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGTTGAAGTATAGTCCATaGATTCAGCCATTGCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: RSTPVQKGCPTTASIKIKLKYSP*IQPLLR Trigger: TCGGAGCAATGGCTGAATTCATGGACTATACTTCAA...CTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR TCA 90 bp | AGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGCTCTTGAGAATGCTCTaGTGTTTGGTAGATGCTTTC | + |
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Preference number: 4 (lower is better) Translates to: RSTPVQKGCPTTASIKIKLLRML*CLVDAF Trigger: GAAAGCATCTACCAAACATCAGAGCATTCTCAAGAG...CTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGTTCAGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGATTGATGGTATCTGAGTACATGTaGATCTCTGGAGGTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LQFRKAAPLQPALKSRLMVSEYM*ISGGFL Trigger: AAGGAAACCTCCAGAGATGCACATGTACTCAGATAC...CATCAATCTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCTGAACTGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR CCA 90 bp | GTTAAAATGAGCTTGAAAGAGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACGTACATGTGCATCTCTaGAGGTTTCCTTCTGTGATA | + |
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Preference number: 4 (lower is better) Translates to: VKMSLKEIDSSSERLPHYVHVHL*RFPSVI Trigger: TATCACAGAAGGAAACCTCCAGAGATGCACATGTAC...GTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCTCTTTCAAGCTCATTTTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR GCA 90 bp | GTTAAAATGAGCTTGAAAGAGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACCTGATGTTTGGTAGATaGTTTCTTGTCCAACAGATG | + |
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Preference number: 4 (lower is better) Translates to: VKMSLKEIDSSSERLPHYLMFGR*FLVQQM Trigger: CATCTGTTGGACAAGAAAGCATCTACCAAACATCAG...GTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCTCTTTCAAGCTCATTTTAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR GCA 90 bp | AGAAAGGCTGCCCCACTACAGCCAGCATTAAAATCAAGATTGATGCATCATTATTCAACTGCAACCACGTaGGTCTTCTTGGATAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RKAAPLQPALKSRLMHHYSTATT*VFLDKA Trigger: TGCCTTATCCAAGAAGACGCACGTGGTTGCAGTTGA...ATAATGATGCATCAATCTTGATTTTAATGCTGGCTGTAGTGGGGCAGCCTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS-3UTR CCA 90 bp | TTAACACTTACTTGGGAAGCCAGCAGTAAAAGCTGCTCAGACAGCACCATTACATGCTCCTCCTTCCTCTaGCATAGACAAGTAGTATTT | + |
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Preference number: 4 (lower is better) Translates to: LTLTWEASSKSCSDSTITCSSFL*HRQVVF Trigger: AAATACTACTTGTCTATGCCAGAGGAAGGAGGAGCA...TGTAATGGTGCTGTCTGAGCAGCTTTTACTGCTGGCTTCCCAAGTAAGTGTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS GCA 90 bp | GACCCCCACGTTGCCTCTGGATCGCTCTGGAGAATGCCAGTCCACTaGCCTCCTCTTGGCGCGCTCCAATACTTCCCTCCCCAGCCGAGC | + |
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Preference number: 5 (lower is better) Translates to: DPHVASGSLWRMPVH*PPLGALQYFPPQPS Trigger: GCTCGGCTGGGGAGGGAAGTATTGGAGCGCGCCAAGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAACGTGGGGGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS CCA 90 bp | TGCCTCTGGATCGCTCTGGAGAATGCCAGTCCACTGCCCTCCTCTTaGCGCGCTCCAATACTTCCCTCCCCAGCCGAGCAGAGCGCTGGA | + |
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Preference number: 5 (lower is better) Translates to: CLWIALENASPLPSS*RAPILPSPAEQSAG Trigger: TCCAGCGCTCTGCTCGGCTGGGGAGGGAAGTATTGGAGCGCGCCAAGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS CCA 90 bp | TTTCCTGGTAGGGGCCCTGGCGGTAAAGGACCCCCACGTTGCCTCTaGATCGCTCTGGAGAATGCCAGTCCACTGCCCTCCTCTTGGCGC | + |
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Preference number: 5 (lower is better) Translates to: FPGRGPGGKGPPRCL*IALENASPLPSSWR Trigger: GCGCCAAGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAACGTGGGGGTCCTTTACCGCCAGGGCCCCTACCAGGAAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS GCA 90 bp | ACCATCTTTCCTGGTAGGGGCCCTGGCGGTAAAGGACCCCCACGTTaGCTCTGGATCGCTCTGGAGAATGCCAGTCCACTGCCCTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: TIFPGRGPGGKGPPR*LWIALENASPLPSS Trigger: AGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAACGTGGGGGTCCTTTACCGCCAGGGCCCCTACCAGGAAAGATGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS-3UTR CAA 90 bp | GTTAAAATGAGCTTGAAAGAGATCGACTCCAGTTCAGAAAGGCTGCCCCACTACGCCTCTGCAGTTTCTTaGTTCCTGACTGTGCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: VKMSLKEIDSSSERLPHYASAVS*FLTVPS Trigger: ACTGGGCACAGTCAGGAACAAAGAAACTGCAGAGGC...GTAGTGGGGCAGCCTTTCTGAACTGGAGTCGATCTCTTTCAAGCTCATTTTAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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| CDS CCA 72 bp | AGGGGCCCTGGCGGTAAAGGACCCCCACGTTGCCTCTaGATCGCTCTGGAGAATGCCAGTCCACTGCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RGPGGKGPPRCL*IALENASPLPS Trigger: GGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAACGTGGGGGTCCTTTACCGCCAGGGCCCCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS CAA 90 bp | TTGCCTCTGGATCGCTCTGGAGAATGCCAGTCCACTGCCCTCCTCTaGGCGCGCTCCAATACTTCCCTCCCCAGCCGAGCAGAGCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: LPLDRSGECQSTALL*ARSNTSLPSRAERW Trigger: CCAGCGCTCTGCTCGGCTGGGGAGGGAAGTATTGGAGCGCGCCAAGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS GCA 72 bp | AGGACCCCCACGTTGCCTCTGGATCGCTCTGGAGAATaGCAGTCCACTGCCCTCCTCTTGGCGCGCTCCAAT | + |
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Preference number: 6 (lower is better) Translates to: RTPTLPLDRSGE*QSTALLLARSN Trigger: ATTGGAGCGCGCCAAGAGGAGGGCAGTGGACTGGCATTCTCCAGAGCGATCCAGAGGCAACGTGGGGGTCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS TCA 72 bp | TCTGCAGTTTCTTTGTTCCTGACTGTGCCCAGTATCTaGGTACATGTGCATCTCTGGAGGTTTCCTTCTGTG | + |
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Preference number: 6 (lower is better) Translates to: SAVSLFLTVPSI*VHVHLWRFPSV Trigger: CACAGAAGGAAACCTCCAGAGATGCACATGTACTCAGATACTGGGCACAGTCAGGAACAAAGAAACTGCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033335.6 ENSMUST00000143581.2 |
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| CDS TCA 72 bp | GTTCTCAGTAGGCCAAGAGGACTCTTGAGAATGCTCTaGTGTTTGGTAGATGCTTTCTTGTCCAACAGATGT | + |
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Preference number: 6 (lower is better) Translates to: VLSRPRGLLRML*CLVDAFLSNRC Trigger: ACATCTGTTGGACAAGAAAGCATCTACCAAACATCAGAGCATTCTCAAGAGTCCTCTTGGCCTACTGAGAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033335.6 |
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