Pregenerated sensors for AKAP7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039166Ensembl transcript IDs: ENSMUST00000041984.14, ENSMUST00000095779.11, ENSMUST00000100012.3, ENSMUST00000176258.8, ENSMUST00000177124.2, ENSMUST00000220347.2
Found 145 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCAGTATTCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTaGGTCAGGCAGGCGGTCCGAAAAGCCCGCTCTCCCTTGTGCATG | + |
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Preference number: 1 (lower is better) Translates to: GSILSVASPLPPSAL*VRQAVRKARSPLCM Trigger: CATGCACAAGGGAGAGCGGGCTTTTCGGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGAATACTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR TCA 90 bp | AAGGACTGTGACACTGGACAAGCCCGGACAATGCTTCCTCTGAAGTaGCAAGGGCCACATCAACAGGAGGCAGGTGACCCTTACATCAAC | + |
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Preference number: 1 (lower is better) Translates to: KDCDTGQARTMLPLK*QGPHQQEAGDPYIN Trigger: GTTGATGTAAGGGTCACCTGCCTCCTGTTGATGTGGCCCTTGTCACTTCAGAGGAAGCATTGTCCGGGCTTGTCCAGTGTCACAGTCCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR TCA 90 bp | AGCAAAAGGACTGTGACACTGGACAAGCCCGGACAATGCTTCCTCTaGAGTGACAAGGGCCACATCAACAGGAGGCAGGTGACCCTTACA | + |
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Preference number: 1 (lower is better) Translates to: SKRTVTLDKPGQCFL*SDKGHINRRQVTLT Trigger: TGTAAGGGTCACCTGCCTCCTGTTGATGTGGCCCTTGTCACTTCAGAGGAAGCATTGTCCGGGCTTGTCCAGTGTCACAGTCCTTTTGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR CCA 90 bp | TTCAGCTCCATCCTTTCTCGGTGCAAAGCTTCATTAATTAAGTCTTaGGTTCCAACTGGCTTCTTGCCTAAGGGGAAAAATTATATAATA | + |
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Preference number: 1 (lower is better) Translates to: FSSILSRCKASLIKS*VPTGFLPKGKNYII Trigger: TATTATATAATTTTTCCCCTTAGGCAAGAAGCCAGTTGGAACCCAAGACTTAATTAATGAAGCTTTGCACCGAGAAAGGATGGAGCTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CCA 90 bp | GATAATGGTGATGATGACCATGATAAGGCAAAAATATGTTTTCTTTaGCAAGAAGTTGTTAATTCCTTACCAAGTGTTGGTTTGTGGGCT | + |
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Preference number: 1 (lower is better) Translates to: DNGDDDHDKAKICFL*QEVVNSLPSVGLWA Trigger: AGCCCACAAACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAAGAAAACATATTTTTGCCTTATCATGGTCATCATCACCATTATC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100012.3 ENSMUST00000220347.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCGCCCGCTCTCCCTTGTaGATGGTCGATGGCACACCG | + |
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Preference number: 2 (lower is better) Translates to: CLWQVLSLPPPCESGRRSARSPL*MVDGTP Trigger: CGGTGTGCCATCGACCATGCACAAGGGAGAGCGGGC...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTGTGATCTCCAGGGCTTaGACAAGACACATTGCGAGT | + |
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Preference number: 2 (lower is better) Translates to: SVCGKSSPSLRLVSQAGGVISRA*TRHIAS Trigger: ACTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCAC...ACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CCA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCATTAATTTCTTCTGCTaGTCCCAGCACCCCATTCTT | + |
|
Preference number: 2 (lower is better) Translates to: CLWQVLSLPPPCESGRRSINFFC*SQHPIL Trigger: AAGAATGGGGTGCTGGGACCAGCAGAAGAAATTAAT...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CAA 90 bp | AGCCCGCTCTCCCTTGTGCATGGTCGATGGCACACCGACTTAGTGTaGTTCTTCTGTAAATTAATTTCTTCTGCTGGTCCCAGCACCCCA | + |
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Preference number: 2 (lower is better) Translates to: SPLSLVHGRWHTDLV*FFCKLISSAGPSTP Trigger: TGGGGTGCTGGGACCAGCAGAAGAAATTAATTTACAGAAGAACAACACTAAGTCGGTGTGCCATCGACCATGCACAAGGGAGAGCGGGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CCA 90 bp | ACAACAGTGGAGAGCTATGGCAAAATCAGGTTGAAATCAGCATTGCTTGTTGGAGCAGTATTCTGTCTGTaGCAAGTCCTCTCCCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: TTVESYGKIRLKSALLVGAVFCL*QVLSLP Trigger: AGGGAGGGAGAGGACTTGCCACAGACAGAATACTGC...TCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CCA 90 bp | ACAGCAGCAAACGCTTCTAACCGGCCTGAAGGAAATTTGCATACAAATTTAGCACATTTCAGCTGCTTCTaGCAGGTCCTTTCCAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: TAANASNRPEGNLHTNLAHFSCF*QVLSSL Trigger: AAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATG...TGCTAAATTTGTATGCAAATTTCCTTCAGGCCGGTTAGAAGCGTTTGCTGCTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| 3UTR-3UTR TCA 90 bp | TTTGGCAAGAAGTTGTTAATTCCTTACCAAGTGTTGGTTTGTGGGCTTTGTAGAGTGATCTCCAGGGCTTaGACAAGACACATTGCGAGT | + |
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Preference number: 2 (lower is better) Translates to: FGKKLLIPYQVLVCGLCRVISRA*TRHIAS Trigger: ACTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCAC...TCTACAAAGCCCACAAACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR-3UTR CCA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCATTAATTTCTTCTGCTaGTCCCAGCACCCCATTCTT | + |
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Preference number: 2 (lower is better) Translates to: NNDKLNLALDSCVQVLASINFFC*SQHPIL Trigger: AAGAATGGGGTGCTGGGACCAGCAGAAGAAATTAAT...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CAA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTaGGCCTCCGATAAAGTAGTCAAAGGATCGAAGCAATGTAAACGG | + |
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Preference number: 2 (lower is better) Translates to: NNDKLNLALDSCVQV*ASDKVVKGSKQCKR Trigger: CCGTTTACATTGCTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR TCA 90 bp | GCTTATCTTCATAGAGTAGGAAATAAGAGCCCTGAACATTCTTCACTAAGAAATATGCTTCCTCTGAAGTaGCAAGGGCCACATCAACAG | + |
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Preference number: 2 (lower is better) Translates to: AYLHRVGNKSPEHSSLRNMLPLK*QGPHQQ Trigger: CTGTTGATGTGGCCCTTGTCACTTCAGAGGAAGCAT...ATTTCTTAGTGAAGAATGTTCAGGGCTCTTATTTCCTACTCTATGAAGATAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR CAA 90 bp | ACTTTACCAGGCATAACAACAGTGGAGAGCTATGGCAAAATCAGGTaGAAATCAGCATTGCTTGTTGGACTACCATTATTAAAAACTCTT | + |
|
Preference number: 2 (lower is better) Translates to: TLPGITTVESYGKIR*KSALLVGLPLLKTL Trigger: AAGAGTTTTTAATAATGGTAGTCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGTTATGCCTGGTAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CAA 90 bp | ATGATGACCATGATAAGGCAAAAATATGTTTTCTTTGGCAAGAAGTaGTTAATTCCTTACCAAGTGTTGGTTTGTGGGCTTTGTAGAAAC | + |
|
Preference number: 2 (lower is better) Translates to: MMTMIRQKYVFFGKK*LIPYQVLVCGLCRN Trigger: GTTTCTACAAAGCCCACAAACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAAGAAAACATATTTTTGCCTTATCATGGTCATCAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100012.3 ENSMUST00000220347.2 |
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| 3UTR-3UTR TCA 90 bp | TACTTTTCTATTTTAGGGCTGAATTCACTAGTCCTCCATACTTGTATGAAGAGTTTCCACATTACAAAATaGAGAACTACAGCAGCAAAC | + |
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Preference number: 2 (lower is better) Translates to: YFSILGLNSLVLHTCMKSFHITK*RTTAAN Trigger: GTTTGCTGCTGTAGTTCTTCATTTTGTAATGTGGAA...ACTCTTCATACAAGTATGGAGGACTAGTGAATTCAGCCCTAAAATAGAAAAGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| 3UTR-3UTR TCA 90 bp | AGTAGCAGCAATTTTAAAGTAACTACCCAAAGAGCTGTTACAAAGAAACATCACATGCTCGTTTATAAATaGACCAGTGCAAACTACTCA | + |
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Preference number: 2 (lower is better) Translates to: SSSNFKVTTQRAVTKKHHMLVYK*TSANYS Trigger: TGAGTAGTTTGCACTGGTTCATTTATAAACGAGCAT...GTGATGTTTCTTTGTAACAGCTCTTTGGGTAGTTACTTTAAAATTGCTGCTACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR TCA 72 bp | CTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTaGGTCAGGCAGGCGGTCCGAAAAGCCCGCTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: LSVASPLPPSAL*VRQAVRKARSP Trigger: GGGAGAGCGGGCTTTTCGGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | CCACATCAACAGGAGGCAGGTGACCCTTACATCAACAGGAGGCAGGTGACCCTTGGTGATCTCCAGGGCTaGAACAAGACACATTGCGAG | + |
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Preference number: 3 (lower is better) Translates to: PHQQEAGDPYINRRQVTLGDLQG*NKTHCE Trigger: CTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCACC...AAGGGTCACCTGCCTCCTGTTGATGTAAGGGTCACCTGCCTCCTGTTGATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | AAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAGGTGATCTCCAGGGCTaGAACAAGACACATTGCGAG | + |
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Preference number: 3 (lower is better) Translates to: KLNLALDSCVQVLASDKVGDLQG*NKTHCE Trigger: CTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCACC...TACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCCCCCATTCTTTTCTGTaGTGTCGCAGCAACACCGAA | + |
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Preference number: 3 (lower is better) Translates to: NNDKLNLALDSCVQVLASPHSFL*CRSNTE Trigger: TTCGGTGTTGCTGCGACACAACAGAAAAGAATGGGG...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR TCA 72 bp | GAACGCATCAATCACATCAATCAGAGAAGTATTAGGTaGTCTCCAGGGCTTGAACAAGACACATTGCGAGTT | + |
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Preference number: 3 (lower is better) Translates to: ERINHINQRSIR*SPGLEQDTLRV Trigger: AACTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCACCTAATACTTCTCTGATTGATGTGATTGATGCGTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | ACAACAGTGGAGAGCTATGGCAAAATCAGGTTGAAATCAGCATTGCTTGTTGGAGTTCCAACTGGCTTCTaGCCTAAGGGGAAAAATTAT | + |
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Preference number: 3 (lower is better) Translates to: TTVESYGKIRLKSALLVGVPTGF*PKGKNY Trigger: ATAATTTTTCCCCTTAGGCAAGAAGCCAGTTGGAAC...TCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CCA 72 bp | ATCCTTTCTCGGTGCAAAGCTTCATTAATTAAGTCTTaGGTTCCAACTGGCTTCTTGCCTAAGGGGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: ILSRCKASLIKS*VPTGFLPKGKN Trigger: ATTTTTCCCCTTAGGCAAGAAGCCAGTTGGAACCCAAGACTTAATTAATGAAGCTTTGCACCGAGAAAGGAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR CCA 72 bp | AAACACTTTACCAGGCATAACAACAGTGGAGAGCTATaGCAAAATCAGGTTGAAATCAGCATTGCTTGTTGG | + |
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Preference number: 3 (lower is better) Translates to: KHFTRHNNSGEL*QNQVEISIACW Trigger: CCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGTTATGCCTGGTAAAGTGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | AAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTACTTGAACAAGACACATaGCGAGTTAGTCTACGACTT | + |
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Preference number: 3 (lower is better) Translates to: KLNLALDSCVQVLASDKVLEQDT*RVSLRL Trigger: AAGTCGTAGACTAACTCGCAATGTGTCTTGTTCAAG...TACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | GTTCATAAACACTTTACCAGGCATAACAACAGTGGAGAGCTATGGCAAAATCAGGTTCCAACTGGCTTCTaGCCTAAGGGGAAAAATTAT | + |
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Preference number: 3 (lower is better) Translates to: VHKHFTRHNNSGELWQNQVPTGF*PKGKNY Trigger: ATAATTTTTCCCCTTAGGCAAGAAGCCAGTTGGAAC...CTGATTTTGCCATAGCTCTCCACTGTTGTTATGCCTGGTAAAGTGTTTATGAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR-3UTR CAA 90 bp | GTAGAAACTGTAAGAACACTCTGTTTACTCACCAAAGAGCTATTTAATGGGCTGCTTGAACAAGACACATaGCGAGTTAGTCTACGACTT | + |
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Preference number: 3 (lower is better) Translates to: VETVRTLCLLTKELFNGLLEQDT*RVSLRL Trigger: AAGTCGTAGACTAACTCGCAATGTGTCTTGTTCAAG...CAGCCCATTAAATAGCTCTTTGGTGAGTAAACAGAGTGTTCTTACAGTTTCTAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
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| 3UTR GCA 72 bp | TGTTTCACTTTGGATTTCAGCTCCATCCTTTCTCGGTaGAAAGCTTCATTAATTAAGTCTTGGGTTCCAACT | + |
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Preference number: 3 (lower is better) Translates to: CFTLDFSSILSR*KASLIKSWVPT Trigger: AGTTGGAACCCAAGACTTAATTAATGAAGCTTTGCACCGAGAAAGGATGGAGCTGAAATCCAAAGTGAAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| 3UTR TCA 72 bp | CACTCTGTTTACTCACCAAAGAGCTATTTAATGGGCTaGGAGTTCATAAACACTTTACCAGGCATAACAACA | + |
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Preference number: 3 (lower is better) Translates to: HSVYSPKSYLMG*EFINTLPGITT Trigger: TGTTGTTATGCCTGGTAAAGTGTTTATGAACTCTCAGCCCATTAAATAGCTCTTTGGTGAGTAAACAGAGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100012.3 ENSMUST00000220347.2 |
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| 3UTR CCA 72 bp | GATGATGACCATGATAAGGCAAAAATATGTTTTCTTTaGCAAGAAGTTGTTAATTCCTTACCAAGTGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: DDDHDKAKICFL*QEVVNSLPSVG Trigger: ACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAAGAAAACATATTTTTGCCTTATCATGGTCATCATC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100012.3 ENSMUST00000220347.2 |
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| CDS-3UTR CCA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCCTCCCTCCTCAGCTTTaGTGGAGTTCCCCTCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: CLWQVLSLPPPCESGRRSLPPQL*WSSPPL Trigger: CAGGGGAGGGGAACTCCACCAAAGCTGAGGAGGGAG...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
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| CDS-3UTR CCA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCAAAGTGCCAATCCCTTaGAAGGGCAAAGCCAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: CLWQVLSLPPPCESGRRSKVPIP*KGKAKC Trigger: ACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTT...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS-3UTR GCA 90 bp | CGGCAGTATTCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGTGCTATCTCCAGGAGTaGGCTAACATGGTCTCCATC | + |
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Preference number: 4 (lower is better) Translates to: RQYSVCGKSSPSLRLVSQCYLQE*ANMVSI Trigger: GATGGAGACCATGTTAGCGCACTCCTGGAGATAGCA...CTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGAATACTGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS-3UTR GCA 90 bp | CGGCAGTATTCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCTTCTCTTTGGGTTTaGTTGAGGTACATCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RQYSVCGKSSPSLRLVSQASLWV*LRYIRA Trigger: AGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGC...CTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGAATACTGCCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS-3UTR CCA 90 bp | TTCCCTCCCCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGCCCAGGGTGGAGCTTTaGAGCAGTGACTCTTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: FPPHFSCFWQVLSSLSVLPRVEL*SSDSLS Trigger: GCTCAAAGAGTCACTGCTCCAAAGCTCCACCCTGGG...CAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGGGGAGGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| CDS-3UTR GCA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCCTTCAATTCCAAAAGTaGATCGGTACCGATATTTAC | + |
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Preference number: 4 (lower is better) Translates to: CLWQVLSLPPPCESGRRSLQFQK*IGTDIY Trigger: GTAAATATCGGTACCGATGCACTTTTGGAATTGAAG...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS-3UTR GCA 90 bp | CTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCATGAATGCCCCCCCACCACAGGCTCCATaGATGAAGAGGATTTTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLAGPFQSFSADAFMNAPPPQAP*MKRILG Trigger: GCCCAAAATCCTCTTCATGCATGGAGCCTGTGGTGG...GGGGGCATTCATGAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAG 53% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| CDS-3UTR GCA 90 bp | CCCCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTGGAGGAAAGCAGTTTTaGTCCACCACAGGCTCCATG | + |
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Preference number: 4 (lower is better) Translates to: PHFSCFWQVLSSLSVLMRGGKQF*STTGSM Trigger: CATGGAGCCTGTGGTGGAGCAAAACTGCTTTCCTCC...ACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| CDS-3UTR CCA 90 bp | TCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTTTCTTTGCTTCTCTTTaGGTTTGCTTGAGGTACATC | + |
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Preference number: 4 (lower is better) Translates to: SVCGKSSPSLRLVSQAGGFFASL*VCLRYI Trigger: GATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAA...ACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS-3UTR TCA 90 bp | CTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCATGAATGCCCCCGGGCCTTTTTGTTGGTaGTCGGAATGGACAGGAAAT | + |
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Preference number: 4 (lower is better) Translates to: LLAGPFQSFSADAFMNAPGPFCW*SEWTGN Trigger: ATTTCCTGTCCATTCCGATCACCAACAAAAAGGCCC...GGGGGCATTCATGAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| CDS-3UTR GCA 90 bp | TTCCCTCCCCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGGCTTCTCTTTGGGTTTaGTTGAGGTACATCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: FPPHFSCFWQVLSSLSVLASLWV*LRYIRA Trigger: AGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGC...CAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGGGGAGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| 3UTR CAA 72 bp | TTTCTTCTGCTGGTCCCAGCACCCCATTCTTTTCTGTaGTGTCGCAGCAACACCGAACGCATCAATCACATC | + |
|
Preference number: 4 (lower is better) Translates to: FLLLVPAPHSFL*CRSNTERINHI Trigger: GATGTGATTGATGCGTTCGGTGTTGCTGCGACACAACAGAAAAGAATGGGGTGCTGGGACCAGCAGAAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CCA 90 bp | CTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAGTCAAAGGATCGAAGTCTTCTAGGTACTGCTaGACAGCCTTGAGCACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: LDSCVQVLASDKVVKGSKSSRYC*TALSTA Trigger: CGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGA...CTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CCA 90 bp | GTGTTGGTTTGTGGGCTTTGTAGAAACTGTAAGAACACTCTGTTTACTCACCAACTCCCTCCTCAGCTTTaGTGGAGTTCCCCTCCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: VLVCGLCRNCKNTLFTHQLPPQL*WSSPPL Trigger: CAGGGGAGGGGAACTCCACCAAAGCTGAGGAGGGAG...TTGGTGAGTAAACAGAGTGTTCTTACAGTTTCTACAAAGCCCACAAACCAACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | CCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCCTTCCACAGTCATCTTaGATATCTACAGCAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: PFQLLLAGPFQSFSADAFLPQSS*ISTAAN Trigger: GTTTGCTGCTGTAGATATTCAAGATGACTGTGGAAG...GAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR GCA 90 bp | CTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCATGAATGCCCCCCAATCCTCTTTCTTTTaGCAGGAGGAAAGCAGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: LLAGPFQSFSADAFMNAPQSSFF*QEESSF Trigger: AAAACTGCTTTCCTCCTGGCAAAAGAAAGAGGATTG...GGGGGCATTCATGAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAG 48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR CCA 90 bp | CTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCATGAATGCCCCCTTCTTTGCTTCTCTTTaGGTTTGCTTGAGGTACATC | + |
|
Preference number: 4 (lower is better) Translates to: LLAGPFQSFSADAFMNAPFFASL*VCLRYI Trigger: GATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAA...GGGGGCATTCATGAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR CCA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCTCTTCTAGGTACTGCTaGACAGCCTTGAGCACGGCG | + |
|
Preference number: 4 (lower is better) Translates to: NNDKLNLALDSCVQVLASSSRYC*TALSTA Trigger: CGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGA...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | CTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAGTCAAAGGATCGAAGCTCTTTGGGTTTGCTTaGGGTACATCAGGGCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LDSCVQVLASDKVVKGSKLFGFA*GTSGLP Trigger: TGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAG...CTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR TCA 90 bp | CATTTCAACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGACTGCTGGACAGCCTTaGGCACGGCGTTCTCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: HFNNDKLNLALDSCVQVLTAGQP*ARRSPP Trigger: TGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGT...CAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTTGAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | GATACCAAAACGAACATTCTAAAACTCAACTTTATGGTGATGACGATGATGGTGACTGCTGGACAGCCTTaGGCACGGCGTTCTCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: DTKTNILKLNFMVMTMMVTAGQP*ARRSPP Trigger: TGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGT...CACCATCATCGTCATCACCATAAAGTTGAGTTTTAGAATGTTCGTTTTGGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR CCA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCAGGAGTGCGCTAACATaGTCTCCATCTGCCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: NNDKLNLALDSCVQVLASRSALT*SPSASF Trigger: GAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCT...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CCA 90 bp | CCCCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTGGGATTTCTGTATCCTaGTTCAATCCTCTTTCTTTT | + |
|
Preference number: 4 (lower is better) Translates to: PHFSCFWQVLSSLSVLMRGISVS*FNPLSF Trigger: AAAAGAAAGAGGATTGAACCAGGATACAGAAATCCC...ACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR TCA 90 bp | ACAGCAGCAAACGCTTCTAACCGGCCTGAAGGAAATTTGCATACAAATTTAGCACTCTTTGGGTTTGCTTaGGGTACATCAGGGCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: TAANASNRPEGNLHTNLALFGFA*GTSGLP Trigger: TGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAG...TGCTAAATTTGTATGCAAATTTCCTTCAGGCCGGTTAGAAGCGTTTGCTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR GCA 90 bp | CAAGTGTTGGTTTGTGGGCTTTGTAGAAACTGTAAGAACACTCTGTTTACTCACGTCTCTTCTAGGTACTaGTGGACAGCCTTGAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: QVLVCGLCRNCKNTLFTHVSSRY*WTALST Trigger: CGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGAC...GTGAGTAAACAGAGTGTTCTTACAGTTTCTACAAAGCCCACAAACCAACACTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR GCA 90 bp | CTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAGTCAAAGGATCGAAGGGCTGCTTTTTGTTCTaGGTCTCTTCTAGGTACTGC | + |
|
Preference number: 4 (lower is better) Translates to: LDSCVQVLASDKVVKGSKGCFLF*VSSRYC Trigger: GCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCC...CTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| 3UTR CAA 72 bp | TCCCTTGTGCATGGTCGATGGCACACCGACTTAGTGTaGTTCTTCTGTAAATTAATTTCTTCTGCTGGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: SLVHGRWHTDLV*FFCKLISSAGP Trigger: GGGACCAGCAGAAGAAATTAATTTACAGAAGAACAACACTAAGTCGGTGTGCCATCGACCATGCACAAGGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | CTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAGTCAAAGGATCGAAGTTCCTCTTCTTCACATaGTCATTCTTGTCGCCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: LDSCVQVLASDKVVKGSKFLFFT*SFLSPL Trigger: TAGAGGCGACAAGAATGATCATGTGAAGAAGAGGAA...CTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR GCA 90 bp | AAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTAAACATGGTCTCCATCTaGCAGCTTCACAAAGCCAAC | + |
|
Preference number: 4 (lower is better) Translates to: KLNLALDSCVQVLASDKVNMVSI*QLHKAN Trigger: GTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTT...TACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR GCA 90 bp | CATTTCAACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGTCTCTTCTAGGTACTaGTGGACAGCCTTGAGCACG | + |
|
Preference number: 4 (lower is better) Translates to: HFNNDKLNLALDSCVQVLVSSRY*WTALST Trigger: CGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGAC...CAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTTGAAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CCA 90 bp | TACTTTTCTATTTTAGGGCTGAATTCACTAGTCCTCCATACTTGTATGAAGAGTCTAGTGAGCTGTCATTaGATCCCTGGGGGAGTAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YFSILGLNSLVLHTCMKSLVSCH*IPGGVA Trigger: GGCTACTCCCCCAGGGATCCAATGACAGCTCACTAG...ACTCTTCATACAAGTATGGAGGACTAGTGAATTCAGCCCTAAAATAGAAAAGTA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR TCA 90 bp | TACTTTTCTATTTTAGGGCTGAATTCACTAGTCCTCCATACTTGTATGAAGAGTGGAGCTTTGGAGCAGTaGCTCTTTGAGCACCTAGTG | + |
|
Preference number: 4 (lower is better) Translates to: YFSILGLNSLVLHTCMKSGALEQ*LFEHLV Trigger: CACTAGGTGCTCAAAGAGTCACTGCTCCAAAGCTCC...ACTCTTCATACAAGTATGGAGGACTAGTGAATTCAGCCCTAAAATAGAAAAGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR GCA 90 bp | CATTTCAACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGTCTTTTCGCAGTCTCTaGTATCTCCAGGAGTGCGCT | + |
|
Preference number: 4 (lower is better) Translates to: HFNNDKLNLALDSCVQVLSFRSL*YLQECA Trigger: AGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGA...CAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTTGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR GCA 90 bp | TTTGGCAAGAAGTTGTTAATTCCTTACCAAGTGTTGGTTTGTGGGCTTTGTAGAGGCTGCTTTTTGTTCTaGGTCTCTTCTAGGTACTGC | + |
|
Preference number: 4 (lower is better) Translates to: FGKKLLIPYQVLVCGLCRGCFLF*VSSRYC Trigger: GCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCC...TCTACAAAGCCCACAAACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| 3UTR CAA 72 bp | ACATCAATCAGAGAAGTATTAGGTGATCTCCAGGGCTaGAACAAGACACATTGCGAGTTAGTCTACGACTTA | + |
|
Preference number: 4 (lower is better) Translates to: TSIREVLGDLQG*NKTHCELVYDL Trigger: TAAGTCGTAGACTAACTCGCAATGTGTCTTGTTCAAGCCCTGGAGATCACCTAATACTTCTCTGATTGATGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| 3UTR CAA 72 bp | AAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTaGGCCTCCGATAAAGTAGTCAAAGGATCGAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: KLNLALDSCVQV*ASDKVVKGSKQ Trigger: TTGCTTCGATCCTTTGACTACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CCA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCTTCATAAAGGTCAGGTaGGGCTTAAAAGTTCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: NNDKLNLALDSCVQVLASFIKVR*GLKVLL Trigger: AAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAA...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CCA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGAGCAGAGATCTATCTaGTACAATAGTTCTTCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: NNDKLNLALDSCVQVLASEQRSI*YNSSSP Trigger: TGGAGAAGAACTATTGTACCAGATAGATCTCTGCTC...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CCA 90 bp | ACACTCTGTTTACTCACCAAAGAGCTATTTAATGGGCTGAGAGTTCATAAACACTCTTGCCGATCACGATaGAAGACTCACAGTGGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: TLCLLTKELFNGLRVHKHSCRSR*KTHSGN Trigger: ATTACCACTGTGAGTCTTCCATCGTGATCGGCAAGA...GTGTTTATGAACTCTCAGCCCATTAAATAGCTCTTTGGTGAGTAAACAGAGTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS-3UTR CCA 90 bp | TGTTTACTCACCAAAGAGCTATTTAATGGGCTGAGAGTTCATAAACACTTTACCTCTCACCGATCACGATaGAAGACTCACAGTGGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: CLLTKELFNGLRVHKHFTSHRSR*KTHSGN Trigger: ATTACCACTGTGAGTCTTCCATCGTGATCGGTGAGA...GGTAAAGTGTTTATGAACTCTCAGCCCATTAAATAGCTCTTTGGTGAGTAAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| 3UTR CAA 72 bp | GGCATAACAACAGTGGAGAGCTATGGCAAAATCAGGTaGAAATCAGCATTGCTTGTTGGACTACCATTATTA | + |
|
Preference number: 4 (lower is better) Translates to: GITTVESYGKIR*KSALLVGLPLL Trigger: TAATAATGGTAGTCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGTTATGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | TGTTTACTCACCAAAGAGCTATTTAATGGGCTGAGAGTTCATAAACACTTTACCCTTCCACAGTCATCTTaGATATCTACAGCAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: CLLTKELFNGLRVHKHFTLPQSS*ISTAAN Trigger: GTTTGCTGCTGTAGATATTCAAGATGACTGTGGAAG...GGTAAAGTGTTTATGAACTCTCAGCCCATTAAATAGCTCTTTGGTGAGTAAACA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CCA 90 bp | CATTTCAACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGATCTCCTCAACGAATaGCTTCAATTCCAAAAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: HFNNDKLNLALDSCVQVLDLLNE*LQFQKC Trigger: GCACTTTTGGAATTGAAGCCATTCGTTGAGGAGATC...CAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTTGAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CCA 90 bp | ACAACAGTGGAGAGCTATGGCAAAATCAGGTTGAAATCAGCATTGCTTGTTGGATCTTCTCCAAATCTGTaGTCGATAAATTGTTCATAC | + |
|
Preference number: 4 (lower is better) Translates to: TTVESYGKIRLKSALLVGSSPNL*SINCSY Trigger: GTATGAACAATTTATCGACCACAGATTTGGAGAAGA...TCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCACTGTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| 3UTR CAA 72 bp | GTGGAGAGCTATGGCAAAATCAGGTTGAAATCAGCATaGCTTGTTGGACTACCATTATTAAAAACTCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VESYGKIRLKSA*LVGLPLLKTLP Trigger: AGGAAGAGTTTTTAATAATGGTAGTCCAACAAGCAATGCTGATTTCAACCTGATTTTGCCATAGCTCTCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR TCA 90 bp | CAAAACGAACATTCTAAAACTCAACTTTATGGTGATGACGATGATGGTGACGATTTTCTAATCTTGGCCTaGGTCTCAGGCTTTAACAAA | + |
|
Preference number: 4 (lower is better) Translates to: QNEHSKTQLYGDDDDGDDFLILA*VSGFNK Trigger: TTTGTTAAAGCCTGAGACTCAGGCCAAGATTAGAAA...ATCGTCACCATCATCGTCATCACCATAAAGTTGAGTTTTAGAATGTTCGTTTTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| 3UTR CAA 72 bp | TTCTTTGGCAAGAAGTTGTTAATTCCTTACCAAGTGTaGGTTTGTGGGCTTTGTAGAAACTGTAAGAACACT | + |
|
Preference number: 4 (lower is better) Translates to: FFGKKLLIPYQV*VCGLCRNCKNT Trigger: AGTGTTCTTACAGTTTCTACAAAGCCCACAAACCAACACTTGGTAAGGAATTAACAACTTCTTGCCAAAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100012.3 ENSMUST00000220347.2 |
||
| CDS-3UTR GCA 90 bp | GGTGATGATGACCATGATAAGGCAAAAATATGTTTTCTTTGGCAAGAAGTTGTTTCCATCCTTTCTCGGTaGAAAGCTTCATTAATTAAG | + |
|
Preference number: 4 (lower is better) Translates to: GDDDHDKAKICFLWQEVVSILSR*KASLIK Trigger: CTTAATTAATGAAGCTTTGCACCGAGAAAGGATGGA...AACAACTTCTTGCCAAAGAAAACATATTTTTGCCTTATCATGGTCATCATCACC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS-3UTR CCA 90 bp | GGTGATGATGACCATGATAAGGCAAAAATATGTTTTCTTTGGCAAGAAGTTGTTTCATTAATTAAGTCTTaGGTTCCAACTGGCTTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: GDDDHDKAKICFLWQEVVSLIKS*VPTGFL Trigger: CAAGAAGCCAGTTGGAACCCAAGACTTAATTAATGA...AACAACTTCTTGCCAAAGAAAACATATTTTTGCCTTATCATGGTCATCATCACC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS-3UTR CAA 90 bp | TCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTTACTGCTGGACAGCCTaGAGCACGGCGTTCTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: SVCGKSSPSLRLVSQAGGYCWTA*STAFST Trigger: GGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTA...ACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS CCA 90 bp | CCCTCCCCTGGCTGCTTTTTGTTCTGCGTCTCTTCTAGGTACTGCTaGACAGCCTTGAGCACGGCGTTCTCCACCAGCCTCTTACTGAGC | + |
|
Preference number: 5 (lower is better) Translates to: PSPGCFLFCVSSRYC*TALSTAFSTSLLLS Trigger: GCTCAGTAAGAGGCTGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCCAGGGGAGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CAA 90 bp | CCACATCAACAGGAGGCAGGTGACCCTTACATCAACAGGAGGCAGGTGACCCTTTACTGCTGGACAGCCTaGAGCACGGCGTTCTCCACC | + |
|
Preference number: 5 (lower is better) Translates to: PHQQEAGDPYINRRQVTLYCWTA*STAFST Trigger: GGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTA...AAGGGTCACCTGCCTCCTGTTGATGTAAGGGTCACCTGCCTCCTGTTGATGTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR CAA 90 bp | CCACATCAACAGGAGGCAGGTGACCCTTACATCAACAGGAGGCAGGTGACCCTTTCTCCCTCCTCAGCTTaGGTGGAGTTCCCCTCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: PHQQEAGDPYINRRQVTLSPSSA*VEFPSP Trigger: AGGGGAGGGGAACTCCACCAAAGCTGAGGAGGGAGA...AAGGGTCACCTGCCTCCTGTTGATGTAAGGGTCACCTGCCTCCTGTTGATGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR CAA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCGCTTCCACAGTCATCTaGAATATCTACAGCAGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: CLWQVLSLPPPCESGRRSASTVI*NIYSSK Trigger: TTTGCTGCTGTAGATATTCAAGATGACTGTGGAAGC...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | TGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGGCAGGCGGTCCCTTCTTTGCTTCTCTTaGGGTTTGCTTGAGGTACAT | + |
|
Preference number: 5 (lower is better) Translates to: CLWQVLSLPPPCESGRRSLLCFS*GLLEVH Trigger: ATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAG...GGACCGCCTGCCTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | CGGCAGTATTCTGTCTGTGGCAAGTCCTCTCCCTCCCTCCGCCTTGTGAGTCAGCTGAGCATCGGTGCTTaGGACAGCTTCATAAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: RQYSVCGKSSPSLRLVSQLSIGA*DSFIKV Trigger: GACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAG...CTGACTCACAAGGCGGAGGGAGGGAGAGGACTTGCCACAGACAGAATACTGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | TTCCCTCCCCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGAGGAGGAAAGCAGTTTaGCTCCACCACAGGCTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: FPPHFSCFWQVLSSLSVLRRKAV*LHHRLH Trigger: ATGGAGCCTGTGGTGGAGCAAAACTGCTTTCCTCCT...CAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGGGGAGGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS TCA 90 bp | AGTGCGCTAACATGGTCTCCATCTGCCAGCTTCACAAAGCCAACCTaGCCTTGGAAAGTGCCAATCCCTTGGAAGGGCAAAGCCAAGTGT | + |
|
Preference number: 5 (lower is better) Translates to: SALTWSPSASFTKPT*PWKVPIPWKGKAKC Trigger: ACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS GCA 90 bp | GGTCTCCATCTGCCAGCTTCACAAAGCCAACCTGACCTTGGAAAGTaGCAATCCCTTGGAAGGGCAAAGCCAAGTGTTTCCCTTCAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: GLHLPASQSQPDLGK*QSLGRAKPSVSLQG Trigger: TCCTTGAAGGGAAACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | CCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCTTTTGGGCCTTTTTGTaGGTGATCGGAATGGACAGG | + |
|
Preference number: 5 (lower is better) Translates to: PFQLLLAGPFQSFSADAFFWAFL*VIGMDR Trigger: CCTGTCCATTCCGATCACCAACAAAAAGGCCCAAAA...GAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS GCA 90 bp | TTTTTCCCGAAATGTTCTTTTCGCAGTCTCTGCTATCTCCAGGAGTaGGCTAACATGGTCTCCATCTGCCAGCTTCACAAAGCCAACCTG | + |
|
Preference number: 5 (lower is better) Translates to: FFPKCSFRSLCYLQE*ANMVSICQLHKANL Trigger: CAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGAACATTTCGGGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCTCGCCCACCATGGCTTaGGTCAGTCGCTTATCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: NNDKLNLALDSCVQVLASSPTMA*VSRLSC Trigger: GCAGGATAAGCGACTGACCAAAGCCATGGTGGGCGA...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | CTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCATGAATGCCCCCTGCATGAAGAGGATTTaGGGCCTTTTTGTTGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: LLAGPFQSFSADAFMNAPCMKRI*GLFVGD Trigger: ATCACCAACAAAAAGGCCCAAAATCCTCTTCATGCA...GGGGGCATTCATGAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CCA 90 bp | TTCTTCCTGAGCATCGGTGCTTTGGACAGCTTCATAAAGGTCAGGTaGGGCTTAAAAGTTCTGCTTTCTCCAGCTAGGATGCCTTTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: FFLSIGALDSFIKVR*GLKVLLSPARMPFS Trigger: GGAAAAAGGCATCCTAGCTGGAGAAAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | CCATTTCAGCTGCTTCTGGCAGGTCCTTTCCAGTCTTTCAGTGCTGATGCGTTCGCTTCCACAGTCATCTaGAATATCTACAGCAGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: PFQLLLAGPFQSFSADAFASTVI*NIYSSK Trigger: TTTGCTGCTGTAGATATTCAAGATGACTGTGGAAGC...GAACGCATCAGCACTGAAAGACTGGAAAGGACCTGCCAGAAGCAGCTGAAATGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CCA 90 bp | TTCAGCTCCATCCTTTCTCGGTGCAAAGCTTCATTAATTAAGTCTTaGGTTCCAACTGGCTTCTTGCCGATCACGATGGAAGACTCACAG | + |
|
Preference number: 5 (lower is better) Translates to: FSSILSRCKASLIKS*VPTGFLPITMEDSQ Trigger: CTGTGAGTCTTCCATCGTGATCGGCAAGAAGCCAGTTGGAACCCAAGACTTAATTAATGAAGCTTTGCACCGAGAAAGGATGGAGCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS-3UTR CAA 90 bp | TGTTTACTCACCAAAGAGCTATTTAATGGGCTGAGAGTTCATAAACACTTTACCTCTCCCTCCTCAGCTTaGGTGGAGTTCCCCTCCCCT | + |
|
Preference number: 5 (lower is better) Translates to: CLLTKELFNGLRVHKHFTSPSSA*VEFPSP Trigger: AGGGGAGGGGAACTCCACCAAAGCTGAGGAGGGAGA...GGTAAAGTGTTTATGAACTCTCAGCCCATTAAATAGCTCTTTGGTGAGTAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS-3UTR CAA 90 bp | ACAGCAGCAAACGCTTCTAACCGGCCTGAAGGAAATTTGCATACAAATTTAGCATCTCTTTGGGTTTGCTaGAGGTACATCAGGGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: TAANASNRPEGNLHTNLASLWVC*RYIRAS Trigger: GGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGA...TGCTAAATTTGTATGCAAATTTCCTTCAGGCCGGTTAGAAGCGTTTGCTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR CAA 90 bp | AAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGATAAAGTATCCCCTGGCTGCTTTTaGTTCTGCGTCTCTTCTAGG | + |
|
Preference number: 5 (lower is better) Translates to: KLNLALDSCVQVLASDKVSPGCF*FCVSSR Trigger: CCTAGAAGAGACGCAGAACAAAAAGCAGCCAGGGGA...TACTTTATCGGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS TCA 90 bp | TTTACTTCATCTTCGTTTAATAACTGCATCACTAGCAAGGTAATATaGAAGGAGCCGTCGCCCACCATGGCTTTGGTCAGTCGCTTATCC | + |
|
Preference number: 5 (lower is better) Translates to: FTSSSFNNCITSKVI*KEPSPTMALVSRLS Trigger: GGATAAGCGACTGACCAAAGCCATGGTGGGCGACGGCTCCTTTCATATTACCTTGCTAGTGATGCAGTTATTAAACGAAGATGAAGTAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000176258.8 |
||
| CDS CCA 90 bp | GAAGGGCAAAGCCAAGTGTTTCCCTTCAAGGATCTCCTCAACGAATaGCTTCAATTCCAAAAGTGCATCGGTACCGATATTTACTTCATC | + |
|
Preference number: 5 (lower is better) Translates to: EGQSQVFPFKDLLNE*LQFQKCIGTDIYFI Trigger: GATGAAGTAAATATCGGTACCGATGCACTTTTGGAATTGAAGCCATTCGTTGAGGAGATCCTTGAAGGGAAACACTTGGCTTTGCCCTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000176258.8 |
||
| CDS-3UTR CAA 90 bp | TACTTTTCTATTTTAGGGCTGAATTCACTAGTCCTCCATACTTGTATGAAGAGTCCTAGTGAGCTGTCATaGGATCCCTGGGGGAGTAGC | + |
|
Preference number: 5 (lower is better) Translates to: YFSILGLNSLVLHTCMKSPSELS*DPWGSS Trigger: GCTACTCCCCCAGGGATCCAATGACAGCTCACTAGG...ACTCTTCATACAAGTATGGAGGACTAGTGAATTCAGCCCTAAAATAGAAAAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS-3UTR CAA 90 bp | GTGTTGGTTTGTGGGCTTTGTAGAAACTGTAAGAACACTCTGTTTACTCACCAATCCTTCTCACAGATTTaGCCCTCGTCTCTGGCGAAA | + |
|
Preference number: 5 (lower is better) Translates to: VLVCGLCRNCKNTLFTHQSFSQI*PSSLAK Trigger: TTTCGCCAGAGACGAGGGCAAAATCTGTGAGAAGGA...TTGGTGAGTAAACAGAGTGTTCTTACAGTTTCTACAAAGCCCACAAACCAACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS GCA 90 bp | CTTGTCGCCTCTATCTTCTTCTTCTTCTTTGCTTCTCTTTGGGTTTaGTTGAGGTACATCAGGGCTTCCACAGTCATCTTGAATATCTAC | + |
|
Preference number: 5 (lower is better) Translates to: LVASIFFFFFASLWV*LRYIRASTVILNIY Trigger: GTAGATATTCAAGATGACTGTGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGACAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000041984.14 ENSMUST00000095779.11 ENSMUST00000176258.8 ENSMUST00000177124.2 |
||
| CDS-3UTR CAA 90 bp | CATTTCAACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGTCTCTTTGGGTTTGCTaGAGGTACATCAGGGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: HFNNDKLNLALDSCVQVLSLWVC*RYIRAS Trigger: GGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGA...CAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTTGAAATG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | AACAATGACAAACTGAACTTAGCACTTGATAGCTGTGTGCAAGTTTTGGCCTCCGTTGTAATCTTTTTGTaGGTGATCGGAATGGACAGG | + |
|
Preference number: 5 (lower is better) Translates to: NNDKLNLALDSCVQVLASVVIFL*VIGMDR Trigger: CCTGTCCATTCCGATCACCAACAAAAAGATTACAAC...GGAGGCCAAAACTTGCACACAGCTATCAAGTGCTAAGTTCAGTTTGTCATTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | GCTTATCTTCATAGAGTAGGAAATAAGAGCCCTGAACATTCTTCACTAAGAAATTCCCCTGGCTGCTTTTaGTTCTGCGTCTCTTCTAGG | + |
|
Preference number: 5 (lower is better) Translates to: AYLHRVGNKSPEHSSLRNSPGCF*FCVSSR Trigger: CCTAGAAGAGACGCAGAACAAAAAGCAGCCAGGGGA...ATTTCTTAGTGAAGAATGTTCAGGGCTCTTATTTCCTACTCTATGAAGATAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS-3UTR CAA 90 bp | TACTTTTCTATTTTAGGGCTGAATTCACTAGTCCTCCATACTTGTATGAAGAGTCCTGGGGGAGTAGCCTaGAAGGGATTTCTGTATCCT | + |
|
Preference number: 5 (lower is better) Translates to: YFSILGLNSLVLHTCMKSPGGVA*KGFLYP Trigger: AGGATACAGAAATCCCTTCAAGGCTACTCCCCCAGG...ACTCTTCATACAAGTATGGAGGACTAGTGAATTCAGCCCTAAAATAGAAAAGTA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CCA 90 bp | ATGGAGCAGAGATCTATCTGGTACAATAGTTCTTCTCCAAATCTGTaGTCGATAAATTGTTCATACAATCCAGGCTCGATTTTTCTCACT | + |
|
Preference number: 5 (lower is better) Translates to: MEQRSIWYNSSSPNL*SINCSYNPGSIFLT Trigger: AGTGAGAAAAATCGAGCCTGGATTGTATGAACAATTTATCGACCACAGATTTGGAGAAGAACTATTGTACCAGATAGATCTCTGCTCCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS-3UTR CAA 90 bp | AGATACCAAAACGAACATTCTAAAACTCAACTTTATGGTGATGACGATGATGGTTATGGCAAAATCAGGTaGAAATCAGCATTGCTTGTT | + |
|
Preference number: 5 (lower is better) Translates to: RYQNEHSKTQLYGDDDDGYGKIR*KSALLV Trigger: AACAAGCAATGCTGATTTCAACCTGATTTTGCCATA...ACCATCATCGTCATCACCATAAAGTTGAGTTTTAGAATGTTCGTTTTGGTATCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS CCA 72 bp | TACCGGAATCTAGTTTTCCCACGGCGGGGCGCTCCATaGTCGCGGCGCAGAGACGGAGGCGCGGGCCCGGGG | + |
|
Preference number: 6 (lower is better) Translates to: YRNLVFPRRGAP*SRRRDGGAGPG Trigger: CCCCGGGCCCGCGCCTCCGTCTCTGCGCCGCGACCATGGAGCGCCCCGCCGTGGGAAAACTAGATTCCGGTA 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177124.2 |
||
| CDS GCA 72 bp | CCTGGCTGCTTTTTGTTCTGCGTCTCTTCTAGGTACTaGTGGACAGCCTTGAGCACGGCGTTCTCCACCAGC | + |
|
Preference number: 6 (lower is better) Translates to: PGCFLFCVSSRY*WTALSTAFSTS Trigger: GCTGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCCAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS CCA 72 bp | GGCTGCTTTTTGTTCTGCGTCTCTTCTAGGTACTGCTaGACAGCCTTGAGCACGGCGTTCTCCACCAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: GCFLFCVSSRYC*TALSTAFSTSL Trigger: GAGGCTGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS CAA 72 bp | GCATCCTCAGGCTCCCTTCGGTCCTTCTCACAGATTTaGCCCTCGTCTCTGGCGAAAGGGAAGCAGCAAAGC | + |
|
Preference number: 6 (lower is better) Translates to: ASSGSLRSFSQI*PSSLAKGKQQS Trigger: GCTTTGCTGCTTCCCTTTCGCCAGAGACGAGGGCAAAATCTGTGAGAAGGACCGAAGGGAGCCTGAGGATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS CAA 90 bp | GGCTGCTTTTTGTTCTGCGTCTCTTCTAGGTACTGCTGGACAGCCTaGAGCACGGCGTTCTCCACCAGCCTCTTACTGAGCCTGACCAGT | + |
|
Preference number: 6 (lower is better) Translates to: GCFLFCVSSRYCWTA*STAFSTSLLLSLTS Trigger: ACTGGTCAGGCTCAGTAAGAGGCTGGTGGAGAACGCCGTGCTCAAGGCTGTCCAGCAGTACCTAGAAGAGACGCAGAACAAAAAGCAGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000100012.3 |
||
| CDS GCA 72 bp | CATCCTCAGGCTCCCTTCGGTCCTTCTCACAGATTTTaGCCTCGTCTCTGGCGAAAGGGAAGCAGCAAAGCT | + |
|
Preference number: 6 (lower is better) Translates to: HPQAPFGPSHRF*PRLWRKGSSKA Trigger: AGCTTTGCTGCTTCCCTTTCGCCAGAGACGAGGGCAAAATCTGTGAGAAGGACCGAAGGGAGCCTGAGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100012.3 |
||
| CDS GCA 72 bp | CTGCCAGCTTCACAAAGCCAACCTGACCTTGGAAAGTaGCAATCCCTTGGAAGGGCAAAGCCAAGTGTTTCC | + |
|
Preference number: 6 (lower is better) Translates to: LPASQSQPDLGK*QSLGRAKPSVS Trigger: GGAAACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS TCA 72 bp | ACATGGTCTCCATCTGCCAGCTTCACAAAGCCAACCTaGCCTTGGAAAGTGCCAATCCCTTGGAAGGGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: TWSPSASFTKPT*PWKVPIPWKGK Trigger: TTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS GCA 72 bp | TGCTATCTCCAGGAGTGCGCTAACATGGTCTCCATCTaGCAGCTTCACAAAGCCAACCTGACCTTGGAAAGT | + |
|
Preference number: 6 (lower is better) Translates to: CYLQECANMVSI*QLHKANLTLES Trigger: ACTTTCCAAGGTCAGGTTGGCTTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCTGGAGATAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS CCA 72 bp | CCTCAGGCTCCCTTCGGTCCTTCTCACCGATCACGATaGAAGACTCACAGTGGTAATAACCATTGCTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: PQAPFGPSHRSR*KTHSGNNHCSV Trigger: AACAGAGCAATGGTTATTACCACTGTGAGTCTTCCATCGTGATCGGTGAGAAGGACCGAAGGGAGCCTGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS GCA 72 bp | CTCGATTTTTCTCACTCCCTTCTTCCTGAGCATCGGTaGTTTGGACAGCTTCATAAAGGTCAGGTGGGGCTT | + |
|
Preference number: 6 (lower is better) Translates to: LDFSHSLLPEHR*FGQLHKGQVGL Trigger: AAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAAGGGAGTGAGAAAAATCGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS CCA 72 bp | CCCTGGGGGAGTAGCCTTGAAGGGATTTCTGTATCCTaGTTCAATCCTCTTTCTTTTGCCAGGAGGAAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: PWGSSLEGISVS*FNPLSFARRKA Trigger: TGCTTTCCTCCTGGCAAAAGAAAGAGGATTGAACCAGGATACAGAAATCCCTTCAAGGCTACTCCCCCAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CAA 72 bp | CACAAAGCCAACCTGACCTTGGAAAGTGCCAATCCCTaGGAAGGGCAAAGCCAAGTGTTTCCCTTCAAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: HKANLTLESANP*EGQSQVFPFKD Trigger: ATCCTTGAAGGGAAACACTTGGCTTTGCCCTTCCAAGGGATTGGCACTTTCCAAGGTCAGGTTGGCTTTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS GCA 72 bp | GATGCCTTTTTCCCGAAATGTTCTTTTCGCAGTCTCTaGTATCTCCAGGAGTGCGCTAACATGGTCTCCATC | + |
|
Preference number: 6 (lower is better) Translates to: DAFFPKCSFRSL*YLQECANMVSI Trigger: GATGGAGACCATGTTAGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGAACATTTCGGGAAAAAGGCATC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS CCA 72 bp | AGCATCGGTGCTTTGGACAGCTTCATAAAGGTCAGGTaGGGCTTAAAAGTTCTGCTTTCTCCAGCTAGGATG | + |
|
Preference number: 6 (lower is better) Translates to: SIGALDSFIKVR*GLKVLLSPARM Trigger: CATCCTAGCTGGAGAAAGCAGAACTTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS CAA 72 bp | CTAGTGAGCTGTCATTGGATCCCTGGGGGAGTAGCCTaGAAGGGATTTCTGTATCCTGGTTCAATCCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: LVSCHWIPGGVA*KGFLYPGSILF Trigger: AAAGAGGATTGAACCAGGATACAGAAATCCCTTCAAGGCTACTCCCCCAGGGATCCAATGACAGCTCACTAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CAA 90 bp | GAAAGCAGTTTTGCTCCACCACAGGCTCCATGCATGAAGAGGATTTaGGGCCTTTTTGTTGGTGATCGGAATGGACAGGAAATAGTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: ESSFAPPQAPCMKRI*GLFVGDRNGQEIVG Trigger: CCCAACTATTTCCTGTCCATTCCGATCACCAACAAAAAGGCCCAAAATCCTCTTCATGCATGGAGCCTGTGGTGGAGCAAAACTGCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CAA 90 bp | TTTGAGCACCTAGTGAGCTGTCATTGGATCCCTGGGGGAGTAGCCTaGAAGGGATTTCTGTATCCTGGTTCAATCCTCTTTCTTTTGCCA | + |
|
Preference number: 6 (lower is better) Translates to: FEHLVSCHWIPGGVA*KGFLYPGSILFLLP Trigger: TGGCAAAAGAAAGAGGATTGAACCAGGATACAGAAATCCCTTCAAGGCTACTCCCCCAGGGATCCAATGACAGCTCACTAGGTGCTCAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CAA 90 bp | TCTCTTTGGGTTTGCTTGAGGTACATCAGGGCTTCCACAGTCATCTaGAATATCTACAGCAGCAAACGGCATGTCTGTCAGGGAACCTAC | + |
|
Preference number: 6 (lower is better) Translates to: SLWVCLRYIRASTVI*NIYSSKRHVCQGTY Trigger: GTAGGTTCCCTGACAGACATGCCGTTTGCTGCTGTAGATATTCAAGATGACTGTGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177124.2 |
||
| CDS GCA 72 bp | AAATGTTCTTTTCGCAGTCTCTGCTATCTCCAGGAGTaGGCTAACATGGTCTCCATCTGCCAGCTTCACAAA | + |
|
Preference number: 6 (lower is better) Translates to: KCSFRSLCYLQE*ANMVSICQLHK Trigger: TTTGTGAAGCTGGCAGATGGAGACCATGTTAGCGCACTCCTGGAGATAGCAGAGACTGCGAAAAGAACATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
||
| CDS GCA 72 bp | AGGGATTTCTGTATCCTGGTTCAATCCTCTTTCTTTTaGCAGGAGGAAAGCAGTTTTGCTCCACCACAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: RDFCILVQSSFF*QEESSFAPPQA Trigger: AGCCTGTGGTGGAGCAAAACTGCTTTCCTCCTGGCAAAAGAAAGAGGATTGAACCAGGATACAGAAATCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CCA 72 bp | AGTCTTGGGTTCCAACTGGCTTCTTGCCGATCACGATaGAAGACTCACAGTGGTAATAACCATTGCTCTGTT | + |
|
Preference number: 6 (lower is better) Translates to: SLGFQLASCRSR*KTHSGNNHCSV Trigger: AACAGAGCAATGGTTATTACCACTGTGAGTCTTCCATCGTGATCGGCAAGAAGCCAGTTGGAACCCAAGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
||
| CDS CAA 72 bp | GTTTGCTTGAGGTACATCAGGGCTTCCACAGTCATCTaGAATATCTACAGCAGCAAACGGCATGTCTGTCAG | + |
|
Preference number: 6 (lower is better) Translates to: VCLRYIRASTVI*NIYSSKRHVCQ Trigger: CTGACAGACATGCCGTTTGCTGCTGTAGATATTCAAGATGACTGTGGAAGCCCTGATGTACCTCAAGCAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177124.2 |
||
| CDS GCA 72 bp | TCAATCCTCTTTCTTTTGCCAGGAGGAAAGCAGTTTTaGTCCACCACAGGCTCCATGCATGAAGAGGATTTT | + |
|
Preference number: 6 (lower is better) Translates to: SILFLLPGGKQF*STTGSMHEEDF Trigger: AAAATCCTCTTCATGCATGGAGCCTGTGGTGGAGCAAAACTGCTTTCCTCCTGGCAAAAGAAAGAGGATTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
||
| CDS CAA 72 bp | ATTTTTCTCACTCCCTTCTTCCTGAGCATCGGTGCTTaGGACAGCTTCATAAAGGTCAGGTGGGGCTTAAAA | + |
|
Preference number: 6 (lower is better) Translates to: IFLTPFFLSIGA*DSFIKVRWGLK Trigger: TTTTAAGCCCCACCTGACCTTTATGAAGCTGTCCAAAGCACCGATGCTCAGGAAGAAGGGAGTGAGAAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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| CDS CAA 90 bp | GTCGCCTCTATCTTCTTCTTCTTCTTTGCTTCTCTTTGGGTTTGCTaGAGGTACATCAGGGCTTCCACAGTCATCTTGAATATCTACAGC | + |
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Preference number: 6 (lower is better) Translates to: VASIFFFFFASLWVC*RYIRASTVILNIYS Trigger: GCTGTAGATATTCAAGATGACTGTGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000041984.14 ENSMUST00000095779.11 ENSMUST00000176258.8 ENSMUST00000177124.2 |
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| CDS CCA 72 bp | AGCCAAGTGTTTCCCTTCAAGGATCTCCTCAACGAATaGCTTCAATTCCAAAAGTGCATCGGTACCGATATT | + |
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Preference number: 6 (lower is better) Translates to: SQVFPFKDLLNE*LQFQKCIGTDI Trigger: AATATCGGTACCGATGCACTTTTGGAATTGAAGCCATTCGTTGAGGAGATCCTTGAAGGGAAACACTTGGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000176258.8 |
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| CDS CCA 72 bp | ATCCTTTCTCGGTGCAAAGCTTCATTAATTAAGTCTTaGGTTCCAACTGGCTTCTTGCCGATCACGATGGAA | + |
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Preference number: 6 (lower is better) Translates to: ILSRCKASLIKS*VPTGFLPITME Trigger: TTCCATCGTGATCGGCAAGAAGCCAGTTGGAACCCAAGACTTAATTAATGAAGCTTTGCACCGAGAAAGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220347.2 |
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| CDS TCA 72 bp | TCCATGCATGAAGAGGATTTTGGGCCTTTTTGTTGGTaGTCGGAATGGACAGGAAATAGTTGGGCTGATAAT | + |
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Preference number: 6 (lower is better) Translates to: SMHEEDFGPFCW*SEWTGNSWADN Trigger: ATTATCAGCCCAACTATTTCCTGTCCATTCCGATCACCAACAAAAAGGCCCAAAATCCTCTTCATGCATGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000095779.11 |
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| CDS CAA 90 bp | TCTTGTCGCCTCTATCTTCTTCTTCTTCTTTGCTTCTCTTTGGGTTaGCTTGAGGTACATCAGGGCTTCCACAGTCATCTTGAATATCTA | + |
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Preference number: 6 (lower is better) Translates to: SCRLYLLLLLCFSLG*LEVHQGFHSHLEYL Trigger: TAGATATTCAAGATGACTGTGGAAGCCCTGATGTACCTCAAGCAAACCCAAAGAGAAGCAAAGAAGAAGAAGAAGATAGAGGCGACAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000041984.14 ENSMUST00000095779.11 ENSMUST00000176258.8 ENSMUST00000177124.2 |
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| CDS GCA 72 bp | TTGGTCAGTCGCTTATCCTGCTGTAGTATCGAATTTTaGAAGACTTTAATTCCGGTTGTAATCTTTTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LVSRLSCCSIEF*KTLIPVVIFLL Trigger: CAACAAAAAGATTACAACCGGAATTAAAGTCTTGCAAAATTCGATACTACAGCAGGATAAGCGACTGACCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041984.14 ENSMUST00000176258.8 |
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| CDS CCA 72 bp | AGATCTATCTGGTACAATAGTTCTTCTCCAAATCTGTaGTCGATAAATTGTTCATACAATCCAGGCTCGATT | + |
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Preference number: 6 (lower is better) Translates to: RSIWYNSSSPNL*SINCSYNPGSI Trigger: AATCGAGCCTGGATTGTATGAACAATTTATCGACCACAGATTTGGAGAAGAACTATTGTACCAGATAGATCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041984.14 |
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