RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AKAP3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030344

Ensembl transcript IDs: ENSMUST00000095440.9, ENSMUST00000202574.2, ENSMUST00000202878.4

Found 236 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATTTATGTCCTTGCTCGCATGGACAAGAAAATCTGCAAAATCCAGTaGGTAGCGTTAGATGGCATGTCTAGTGTGCGTGGCATGGAGGGG +
Preference number: 1 (lower is better)
Translates to: IYVLARMDKKICKIQ*VALDGMSSVRGMEG
Trigger: CCCCTCCATGCCACGCACACTAGACATGCCATCTAACGCTACTCACTGGATTTTGCAGATTTTCTTGTCCATGCGAGCAAGGACATAAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
3UTR TCA 72 bp CTTGCTCGCATGGACAAGAAAATCTGCAAAATCCAGTaGGTAGCGTTAGATGGCATGTCTAGTGTGCGTGGC +
Preference number: 3 (lower is better)
Translates to: LARMDKKICKIQ*VALDGMSSVRG
Trigger: GCCACGCACACTAGACATGCCATCTAACGCTACTCACTGGATTTTGCAGATTTTCTTGTCCATGCGAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGACCTCCCGCCCTCCTTaGCATCTCCTGCATTCCGGG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGTSRPP*HLLHSG
Trigger: CCCGGAATGCAGGAGATGCCAAGGAGGGCGGGAGGT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTACCTCAGCACCGACTaGAGAACCTCCCCGACGCTG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGYLSTD*RTSPTL
Trigger: CAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAACCTCCCGCCCTCCTTaGCATCTCCTGCATTCCGGG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGATSRPP*HLLHSG
Trigger: CCCGGAATGCAGGAGATGCCAAGGAGGGCGGGAGGT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTGGGAAGGCAGAATTTaGCCGGCTGGCATCCCCACA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGWEGRI*PAGIPT
Trigger: TGTGGGGATGCCAGCCGGCCAAATTCTGCCTTCCCA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTTTGCGGAGCCAGCTaGGCACTCGGACAGGATCTG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLCGAS*ALGQDL
Trigger: CAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTTTGCGGAGCCAGCTaGGCACTCGGACAGGATCTG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALCGAS*ALGQDL
Trigger: CAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGCTTCCAGGAAGCTCTaGGCATCCATCTTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGASRKL*ASIFPP
Trigger: GGGAGGAAAGATGGATGCTCAGAGCTTCCTGGAAGC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGACCGAGTCCATCAGGTaGTCCACCATCTGCCCATTC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGTESIR*STICPF
Trigger: GAATGGGCAGATGGTGGAGCACCTGATGGACTCGGT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTACCTCAGCACCGACTaGAGAACCTCCCCGACGCTG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRYLSTD*RTSPTL
Trigger: CAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGAGCCAGTCCAGCAGCTaGAGCCGCGTGACATTTCCC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRSQSSS*SRVTFP
Trigger: GGGAAATGTCACGCGGCTGCAGCTGCTGGACTGGCT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAAGCCAGTCCAGCAGCTaGAGCCGCGTGACATTTCCC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGASQSSS*SRVTFP
Trigger: GGGAAATGTCACGCGGCTGCAGCTGCTGGACTGGCT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCTTTCTCCACGGCAGTaGCTGAGAGCTGAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLSPRQ*LRAEAA
Trigger: AGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTACCAACATGGGAAATaGGGCCCTGGGAAGGGTTCT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGYQHGK*GPGKGS
Trigger: AGAACCCTTCCCAGGGCCTCATTTCCCATGTTGGTA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTGTCGGGGCTGGTCCTaGACAGTTTTTGATCTCCTG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGCRGWS*TVFDLL
Trigger: CAGGAGATCAAAAACTGTTCAGGACCAGCCCCGACA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCCAGCATGGCATCCATaGTATCTGTGGCCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGPAWHP*YLWPFG
Trigger: GCCAAAAGGCCACAGATATCATGGATGCCATGCTGG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCTCCTTGGCATCTCCTaGATTCCGGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLLGIS*IPGLKH
Trigger: GTGTTTGAGTCCCGGAATGCAGGAGATGCCAAGGAG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCGTGACATTTCCCACTaGTTCATCCAGCTGTCGCTC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGRDISH*FIQLSL
Trigger: GAGCGACAGCTGGATGAAGCAGTGGGAAATGTCACG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTGGGAAAATTGGTGCTaGCAGCAGCTTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGWENWC*QQLPGS
Trigger: GCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGAGGTGGCTTGTTGGTaGGAAAATTGGTGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGEVACW*ENWCWQ
Trigger: CTGCCAGCACCAATTTTCCCACCAACAAGCCACCTC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGATAAGGCACCACCAGTaGCCTCCTCATCCTCACAGA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGIRHHQ*PPHPHR
Trigger: TCTGTGAGGATGAGGAGGCCACTGGTGGTGCCTTAT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTGGGAAGGCAGAATTTaGCCGGCTGGCATCCCCACA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRWEGRI*PAGIPT
Trigger: TGTGGGGATGCCAGCCGGCCAAATTCTGCCTTCCCA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCCAGGAGATTTTTGCTaGCTCTTGTGCCACATGTGC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGPGDFC*LLCHMC
Trigger: GCACATGTGGCACAAGAGTCAGCAAAAATCTCCTGG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGCTTCCAGGAAGCTCTaGGCATCCATCTTTCCTCCC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAASRKL*ASIFPP
Trigger: GGGAGGAAAGATGGATGCTCAGAGCTTCCTGGAAGC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGTTCATTATGGATGGTaGGGTAGGCGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGVHYGW*GRRSAG
Trigger: TCCTGCAGAACGCCTACCTCACCATCCATAATGAAC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGGAGACAACCTCCTTTaGGTGCTTCATCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGGDNLL*VLHQHL
Trigger: AAGGTGCTGATGAAGCACGCAAAGGAGGTTGTCTCC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAACCGAGTCCATCAGGTaGTCCACCATCTGCCCATTC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGATESIR*STICPF
Trigger: GAATGGGCAGATGGTGGAGCACCTGATGGACTCGGT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGAAAGGAGACCTCCTGTaGAGCGTTACCCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGKGDLL*SVTQFC
Trigger: GCAAAACTGGGTAACGCTCCACAGGAGGTCTCCTTT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGATACAATCAGGTCCTTaGCCCAGGAGTCTGAGTCAC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGIQSGP*PRSLSH
Trigger: GTGACTCAGACTCCTGGGCCAAGGACCTGATTGTAT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTGTTGGTGGGAAAATTaGTGCTGGCAGCAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGCWWEN*CWQQLP
Trigger: TGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTTTCTCCACGGCAGTaGCTGAGAGCTGAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLSPRQ*LRAEAA
Trigger: AGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTTTCTCCACGGCAGTaGCTGAGAGCTGAAGCAGCT +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALSPRQ*LRAEAA
Trigger: AGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTACCAACATGGGAAATaGGGCCCTGGGAAGGGTTCT +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRYQHGK*GPGKGS
Trigger: AGAACCCTTCCCAGGGCCTCATTTCCCATGTTGGTA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACGTGGATCTTCTCATTaGTCTCCTTTCGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGARGSSH*SPFGPW
Trigger: CCATGGCCCGAAAGGAGATCAATGAGAAGATCCACG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCGTGGATCTTCTCATTaGTCTCCTTTCGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRRGSSH*SPFGPW
Trigger: CCATGGCCCGAAAGGAGATCAATGAGAAGATCCACG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGTCGGGGCTGGTCCTaGACAGTTTTTGATCTCCTG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGACRGWS*TVFDLL
Trigger: CAGGAGATCAAAAACTGTTCAGGACCAGCCCCGACA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACCAGCATGGCATCCATaGTATCTGTGGCCTTTTGGC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAPAWHP*YLWPFG
Trigger: GCCAAAAGGCCACAGATATCATGGATGCCATGCTGG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTGTCCCTGTGCCCTTaGCTGGTAGGCACTCATATA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALSLCP*LVGTHI
Trigger: TATATGAGTGCCTACCAGTCAAGGGCACAGGGACAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTGTCCCTGTGCCCTTaGCTGGTAGGCACTCATATA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLSLCP*LVGTHI
Trigger: TATATGAGTGCCTACCAGTCAAGGGCACAGGGACAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTCCTTGGCATCTCCTaGATTCCGGGACTCAAACAC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALLGIS*IPGLKH
Trigger: GTGTTTGAGTCCCGGAATGCAGGAGATGCCAAGGAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCGTGACATTTCCCACTaGTTCATCCAGCTGTCGCTC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRRDISH*FIQLSL
Trigger: GAGCGACAGCTGGATGAAGCAGTGGGAAATGTCACG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCCCCATTACCAACATaGGAAATGAGGCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPPLPT*EMRPWE
Trigger: TTCCCAGGGCCTCATTTCCCATGTTGGTAATGGGGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACCCCCATTACCAACATaGGAAATGAGGCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAPPLPT*EMRPWE
Trigger: TTCCCAGGGCCTCATTTCCCATGTTGGTAATGGGGG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTGGGAAAATTGGTGCTaGCAGCAGCTTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRWENWC*QQLPGS
Trigger: GCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGAGGTGGCTTGTTGGTaGGAAAATTGGTGCTGGCAG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAEVACW*ENWCWQ
Trigger: CTGCCAGCACCAATTTTCCCACCAACAAGCCACCTC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGAGGAGGTGGCTTGTTaGTGGGAAAATTGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWREEVAC*WENWCW
Trigger: CCAGCACCAATTTTCCCACCAACAAGCCACCTCCTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGAGGAGAAGGAGGAGGTaGCTTGTTGGTGGGAAAATT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGRRRRR*LVGGKI
Trigger: AATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGATAAGGCACCACCAGTaGCCTCCTCATCCTCACAGA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRIRHHQ*PPHPHR
Trigger: TCTGTGAGGATGAGGAGGCCACTGGTGGTGCCTTAT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGCAAACGCCACTTTaGCTTTGTAACCAGTCAACC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLQTPL*LCNQST
Trigger: GGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGGTTGTCTCCAGGTaGATAGACACCAACTTTGCA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLVVSR*IDTNFA
Trigger: TGCAAAGTTGGTGTCTATTCACCTGGAGACAACCAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCAGGAGATTTTTGCTaGCTCTTGTGCCACATGTGC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPGDFC*LLCHMC
Trigger: GCACATGTGGCACAAGAGTCAGCAAAAATCTCCTGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTGTATCTCTTCTTCCTaGGTGTTCTGCTCATGCACA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGCISSS*VFCSCT
Trigger: TGTGCATGAGCAGAACACTCAGGAAGAAGAGATACA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGTTCATTATGGATGGTaGGGTAGGCGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRVHYGW*GRRSAG
Trigger: TCCTGCAGAACGCCTACCTCACCATCCATAATGAAC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGTTCATTATGGATGGTaGGGTAGGCGTTCTGCAGGA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAVHYGW*GRRSAG
Trigger: TCCTGCAGAACGCCTACCTCACCATCCATAATGAAC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGGAGACAACCTCCTTTaGGTGCTTCATCAGCACCTT +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAGDNLL*VLHQHL
Trigger: AAGGTGCTGATGAAGCACGCAAAGGAGGTTGTCTCC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTCCATTTTCCAGTCTTaGTGTTGGTTGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGSIFQS*CWLSPG
Trigger: ACCTGGAGACAACCAACACCAAGACTGGAAAATGGA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGTTTTCAGCGCCGTaGATCTTCTCATTGATCTCC +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLFSAP*IFSLIS
Trigger: GGAGATCAATGAGAAGATCCACGGCGCTGAAAACAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCGGGAGCTTTGTCACTaGAAATGTTCTTGGAACATG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGRELCH*KCSWNM
Trigger: CATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGAAAGGAGACCTCCTGTaGAGCGTTACCCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRKGDLL*SVTQFC
Trigger: GCAAAACTGGGTAACGCTCCACAGGAGGTCTCCTTT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAAAAGGAGACCTCCTGTaGAGCGTTACCCAGTTTTGC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAKGDLL*SVTQFC
Trigger: GCAAAACTGGGTAACGCTCCACAGGAGGTCTCCTTT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTGCAAAATTCTCTGGTaGCTGAGGTTGGTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRCKILW*LRLVRR
Trigger: CCTCCTCACCAACCTCAGCCACCAGAGAATTTTGCA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGCAAAATTCTCTGGTaGCTGAGGTTGGTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGACKILW*LRLVRR
Trigger: CCTCCTCACCAACCTCAGCCACCAGAGAATTTTGCA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGATTTGCAAAATTCTCTaGTGGCTGAGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGICKIL*WLRLVR
Trigger: CCTCACCAACCTCAGCCACCAGAGAATTTTGCAAAT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAATACAATCAGGTCCTTaGCCCAGGAGTCTGAGTCAC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAIQSGP*PRSLSH
Trigger: GTGACTCAGACTCCTGGGCCAAGGACCTGATTGTAT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGATACAATCAGGTCCTTaGCCCAGGAGTCTGAGTCAC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRIQSGP*PRSLSH
Trigger: GTGACTCAGACTCCTGGGCCAAGGACCTGATTGTAT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTGTTGGTGGGAAAATTaGTGCTGGCAGCAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRCWWEN*CWQQLP
Trigger: TGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGTTGGTGGGAAAATTaGTGCTGGCAGCAGCTTCCA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGACWWEN*CWQQLP
Trigger: TGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTCGGACAGGATCTGTTaGTGTGTCCATTTTCCAGTC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRSDRIC*CVHFPV
Trigger: GACTGGAAAATGGACACATCAACAGATCCTGTCCGA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGAAGGGTTCTCCTTGTaGGACATCTCAAAATGCAAT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGEGFSL*DISKCN
Trigger: ATTGCATTTTGAGATGTCTCACAAGGAGAACCCTTC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
54% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACGCAAAGTTCAAATTTaGGAGCTTTGGGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGARKVQI*ELWVTS
Trigger: GCTGGTGACCCAAAGCTCTCAAATTTGAACTTTGCG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCGCAAAGTTCAAATTTaGGAGCTTTGGGTCACCAGC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRRKVQI*ELWVTS
Trigger: GCTGGTGACCCAAAGCTCTCAAATTTGAACTTTGCG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTTGGCCCAGGAGTCTaGGTCACACATAAAATTTGC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALGPGV*VTHKIC
Trigger: GCAAATTTTATGTGTGACTCAGACTCCTGGGCCAAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTTGGCCCAGGAGTCTaGGTCACACATAAAATTTGC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLGPGV*VTHKIC
Trigger: GCAAATTTTATGTGTGACTCAGACTCCTGGGCCAAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTCTTCAGCAGAATCGTaGCGATGGTTGTGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRSSAES*RWLCPS
Trigger: TGAAGGACACAACCATCGCCACGATTCTGCTGAAGA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATCTTCAGCAGAATCGTaGCGATGGTTGTGTCCTTCA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGASSAES*RWLCPS
Trigger: TGAAGGACACAACCATCGCCACGATTCTGCTGAAGA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGAGGAGAAGGAGGAGGTaGCTTGTTGGTGGGAAAATT +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRRRRRR*LVGGKI
Trigger: AATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGAATAGGCCTTTCACATaGAGTCTTAGGCCTTTCACA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGNRPFT*SLRPFT
Trigger: TGTGAAAGGCCTAAGACTCCATGTGAAAGGCCTATT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTGCAAACGCCACTTTaGCTTTGTAACCAGTCAACC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALQTPL*LCNQST
Trigger: GGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTTGCAAACGCCACTTTaGCTTTGTAACCAGTCAACC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLQTPL*LCNQST
Trigger: GGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTTGGTTGTCTCCAGGTaGATAGACACCAACTTTGCA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLVVSR*IDTNFA
Trigger: TGCAAAGTTGGTGTCTATTCACCTGGAGACAACCAA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGATCCCCCATATACAATaGCTGATGGACACATTTGTT +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGIPHIQ*LMDTFV
Trigger: AACAAATGTGTCCATCAGTCATTGTATATGGGGGAT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTGTATCTCTTCTTCCTaGGTGTTCTGCTCATGCACA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRCISSS*VFCSCT
Trigger: TGTGCATGAGCAGAACACTCAGGAAGAAGAGATACA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCCTCCTTAATAATATaGTCACCCAGAGTTTCGGCA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPSLII*SPRVSA
Trigger: TGCCGAAACTCTGGGTGAGCATATTATTAAGGAGGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATCCATTTTCCAGTCTTaGTGTTGGTTGTCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGASIFQS*CWLSPG
Trigger: ACCTGGAGACAACCAACACCAAGACTGGAAAATGGA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAAAAATGCAATCTTCCTaGACTGCCCTTGTTGGTGGT +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAKMQSS*TALVGG
Trigger: ACCACCAACAAGGGCAGTCCAGGAAGATTGCATTTT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTGTTTTCAGCGCCGTaGATCTTCTCATTGATCTCC +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALFSAP*IFSLIS
Trigger: GGAGATCAATGAGAAGATCCACGGCGCTGAAAACAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACGGGAGCTTTGTCACTaGAAATGTTCTTGGAACATG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGARELCH*KCSWNM
Trigger: CATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAATTTGCAAAATTCTCTaGTGGCTGAGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAICKIL*WLRLVR
Trigger: CCTCACCAACCTCAGCCACCAGAGAATTTTGCAAAT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGATTTGCAAAATTCTCTaGTGGCTGAGGTTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRICKIL*WLRLVR
Trigger: CCTCACCAACCTCAGCCACCAGAGAATTTTGCAAAT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGAAGGGTTCTCCTTGTaGGACATCTCAAAATGCAAT +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWREGFSL*DISKCN
Trigger: ATTGCATTTTGAGATGTCTCACAAGGAGAACCCTTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGTCACACATAAAATTTaGAAAATTCTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGVTHKI*KILWWL
Trigger: CAGCCACCAGAGAATTTTGCAAATTTTATGTGTGAC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
52% GC, longest homopolymer 6 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTTTCTGTTTGTTCTTaGTCACATATCTTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGFSVCS*SHILWG
Trigger: TCCCCACAAGATATGTGACCAAGAACAAACAGAAAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAAATAGGCCTTTCACATaGAGTCTTAGGCCTTTCACA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGANRPFT*SLRPFT
Trigger: TGTGAAAGGCCTAAGACTCCATGTGAAAGGCCTATT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAATCCCCCATATACAATaGCTGATGGACACATTTGTT +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAIPHIQ*LMDTFV
Trigger: AACAAATGTGTCCATCAGTCATTGTATATGGGGGAT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGATCCCCCATATACAATaGCTGATGGACACATTTGTT +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRIPHIQ*LMDTFV
Trigger: AACAAATGTGTCCATCAGTCATTGTATATGGGGGAT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGACTGCCCTTGTTGGTaGTATTGTAATAATCAACAC +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRDCPCW*YCNNQH
Trigger: GTGTTGATTATTACAATACCACCAACAAGGGCAGTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACTGGACTGCCCTTGTTaGTGGTATTGTAATAATCAA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALDCPC*WYCNNQ
Trigger: TTGATTATTACAATACCACCAACAAGGGCAGTCCAG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCCATATACAATGACTaGTGGACACATTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPIYND*WTHLFS
Trigger: TGAAAACAAATGTGTCCATCAGTCATTGTATATGGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR TCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACCCATATACAATGACTaGTGGACACATTTGTTTTCA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAPIYND*WTHLFS
Trigger: TGAAAACAAATGTGTCCATCAGTCATTGTATATGGG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR GCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGTCACACATAAAATTTaGAAAATTCTCTGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRVTHKI*KILWWL
Trigger: CAGCCACCAGAGAATTTTGCAAATTTTATGTGTGAC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTTTCTGTTTGTTCTTaGTCACATATCTTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAFSVCS*SHILWG
Trigger: TCCCCACAAGATATGTGACCAAGAACAAACAGAAAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CCA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTTTTCTGTTTGTTCTTaGTCACATATCTTGTGGGGA +
Preference number: 4 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRFSVCS*SHILWG
Trigger: TCCCCACAAGATATGTGACCAAGAACAAACAGAAAA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp GCTCCTTCTCGTACCTCAGCACCGACTGCAGAACCTCCCCGACGCTaGGGCCTTTCTCCACGGCAGTGGCTGAGAGCTGAAGCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: APSRTSAPTAEPPRR*GLSPRQWLRAEAAS
Trigger: AGAAGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTACGAGAAGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp ACTGCTTCATCCAGCTGTCGCTCCTTCTCGTACCTCAGCACCGACTaGAGAACCTCCCCGACGCTGCGGCCTTTCTCCACGGCAGTGGCT +
Preference number: 5 (lower is better)
Translates to: TASSSCRSFSYLSTD*RTSPTLRPFSTAVA
Trigger: AGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTACGAGAAGGAGCGACAGCTGGATGAAGCAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGACCTCCCGCCCTCCTaGGCATCTCCTGCATTCCGG +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGADLPPS*ASPAFR
Trigger: CCGGAATGCAGGAGATGCCAAGGAGGGCGGGAGGTC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGACCTCCCGCCCTCCTaGGCATCTCCTGCATTCCGG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRDLPPS*ASPAFR
Trigger: CCGGAATGCAGGAGATGCCAAGGAGGGCGGGAGGTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp CCGACTGCAGAACCTCCCCGACGCTGCGGCCTTTCTCCACGGCAGTaGCTGAGAGCTGAAGCAGCTTCTCCTGGATTCCTTCATCGTCAC +
Preference number: 5 (lower is better)
Translates to: PTAEPPRRCGLSPRQ*LRAEAASPGFLHRH
Trigger: GTGACGATGAAGGAATCCAGGAGAAGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGAAGTCATCAGGCCTGTaGTCGGGGCTGGTCCTGAAC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGKSSGL*SGLVLN
Trigger: GTTCAGGACCAGCCCCGACAACAGGCCTGATGACTT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp TGCCATCAGCCAGTCCAGCAGCTGCAGCCGCGTGACATTTCCCACTaGTTCATCCAGCTGTCGCTCCTTCTCGTACCTCAGCACCGACTG +
Preference number: 5 (lower is better)
Translates to: CHQPVQQLQPRDISH*FIQLSLLLVPQHRL
Trigger: CAGTCGGTGCTGAGGTACGAGAAGGAGCGACAGCTGGATGAAGCAGTGGGAAATGTCACGCGGCTGCAGCTGCTGGACTGGCTGATGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCGGAGACAACCTCCTTaGCGTGCTTCATCAGCACCT +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGRRQPP*RASSAP
Trigger: AGGTGCTGATGAAGCACGCAAAGGAGGTTGTCTCCG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGGAGGAGGTGGCTTGTaGGTGGGAAAATTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGGGGGL*VGKLVL
Trigger: CAGCACCAATTTTCCCACCAACAAGCCACCTCCTCC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGCTGTCCCTGTGCCCTaGACTGGTAGGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGAVPVP*TGRHSY
Trigger: ATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGCTGACGATCACCTaGGGGATTTCACAGCCCTCG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLLTIT*GISQPS
Trigger: CGAGGGCTGTGAAATCCCCAAGGTGATCGTCAGCAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGACGGTGTCAGCCAGATaGTGGTTGCTGACGATCACC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGTVSAR*WLLTIT
Trigger: GGTGATCGTCAGCAACCACAATCTGGCTGACACCGT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCCGTGGATCTTCTCATaGATCTCCTTTCGGGCCATG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGPWIFS*ISFRAM
Trigger: CATGGCCCGAAAGGAGATCAATGAGAAGATCCACGG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGAAGTCATCAGGCCTGTaGTCGGGGCTGGTCCTGAAC +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRKSSGL*SGLVLN
Trigger: GTTCAGGACCAGCCCCGACAACAGGCCTGATGACTT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGAATCGTGGCGATGGTaGTGTCCTTCACCTGGATCT +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGESWRW*CPSPGS
Trigger: AGATCCAGGTGAAGGACACAACCATCGCCACGATTC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGATACAATCAGGTCCTaGGCCCAGGAGTCTGAGTCA +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGDTIRS*AQESES
Trigger: TGACTCAGACTCCTGGGCCAAGGACCTGATTGTATC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGTTGGTGGGAAAATaGGTGCTGGCAGCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLLVGK*VLAAAS
Trigger: GGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGAAGGAGGAGGTGGCTaGTTGGTGGGAAAATTGGTG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGEGGGG*LVGKLV
Trigger: CACCAATTTTCCCACCAACAAGCCACCTCCTCCTTC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
59% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGGTCCATTTTCCAGTCTaGGTGTTGGTTGTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGVHFPV*VLVVSR
Trigger: CCTGGAGACAACCAACACCAAGACTGGAAAATGGAC...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTTTTCTCCAGGTCTTaGCGGAGCCAGCTGAGCACT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLFSRS*RSQLST
Trigger: AGTGCTCAGCTGGCTCCGCAAAGACCTGGAGAAAAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCGGAGACAACCTCCTTaGCGTGCTTCATCAGCACCT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRRRQPP*RASSAP
Trigger: AGGTGCTGATGAAGCACGCAAAGGAGGTTGTCTCCG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACGGAGACAACCTCCTTaGCGTGCTTCATCAGCACCT +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGARRQPP*RASSAP
Trigger: AGGTGCTGATGAAGCACGCAAAGGAGGTTGTCTCCG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGAGGAGGTGGCTTGTaGGTGGGAAAATTGGTGCTG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRGGGGL*VGKLVL
Trigger: CAGCACCAATTTTCCCACCAACAAGCCACCTCCTCC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGCTGTCCCTGTGCCCTaGACTGGTAGGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRAVPVP*TGRHSY
Trigger: ATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGCTGTCCCTGTGCCCTaGACTGGTAGGCACTCATAT +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAAVPVP*TGRHSY
Trigger: ATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGACGGTGTCAGCCAGATaGTGGTTGCTGACGATCACC +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRTVSAR*WLLTIT
Trigger: GGTGATCGTCAGCAACCACAATCTGGCTGACACCGT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGAAGGACAGCTTGCAGTaGCTTGTTCTGAACGGTGTC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGKDSLQ*LVLNGV
Trigger: GACACCGTTCAGAACAAGCAACTGCAAGCTGTCCTT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCCACTGAAGGACAGCTaGCAGTTGCTTGTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGPLKDS*QLLVLN
Trigger: GTTCAGAACAAGCAACTGCAAGCTGTCCTTCAGTGG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTACAAAATAGGGACATaGAGCTCTGAGGCAGCCACC +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGYKIGT*SSEAAT
Trigger: GGTGGCTGCCTCAGAGCTCAATGTCCCTATTTTGTA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCTCGGACAGGATCTGTaGATGTGTCCATTTTCCAGT +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLGQDL*MCPFSS
Trigger: ACTGGAAAATGGACACATCAACAGATCCTGTCCGAG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCGTGGATCTTCTCATaGATCTCCTTTCGGGCCATG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPWIFS*ISFRAM
Trigger: CATGGCCCGAAAGGAGATCAATGAGAAGATCCACGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACCAGAGCCGGGAGCTTaGTCACTGGAAATGTTCTTG +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAPEPGA*SLEMFL
Trigger: CAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCCAGAGCCGGGAGCTTaGTCACTGGAAATGTTCTTG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRPEPGA*SLEMFL
Trigger: CAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAGAATCGTGGCGATGGTaGTGTCCTTCACCTGGATCT +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAESWRW*CPSPGS
Trigger: AGATCCAGGTGAAGGACACAACCATCGCCACGATTC...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGAATCGTGGCGATGGTaGTGTCCTTCACCTGGATCT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRESWRW*CPSPGS
Trigger: AGATCCAGGTGAAGGACACAACCATCGCCACGATTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGATCACATTGTATAGCTaGCCCAGCATGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGITLYS*PSMASM
Trigger: CATGGATGCCATGCTGGGCAAGCTATACAATGTGAT...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGCAAGCCAGGAGATTTTaGCTGACTCTTGTGCCACAT +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGQARRF*LTLVPH
Trigger: ATGTGGCACAAGAGTCAGCAAAAATCTCCTGGCTTG...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGATACAATCAGGTCCTaGGCCCAGGAGTCTGAGTCA +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRDTIRS*AQESES
Trigger: TGACTCAGACTCCTGGGCCAAGGACCTGATTGTATC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTGTTGGTGGGAAAATaGGTGCTGGCAGCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALLVGK*VLAAAS
Trigger: GGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGAAGGAGGAGGTGGCTaGTTGGTGGGAAAATTGGTG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWREGGGG*LVGKLV
Trigger: CACCAATTTTCCCACCAACAAGCCACCTCCTCCTTC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp ACTTCCTCCACAAACGATGACTCTCCAGGCTTGAACCTCGAGTCCTaGAAGCCCGCTGTACTTTTCTCCAGGTCTTTGCGGAGCCAGCTG +
Preference number: 5 (lower is better)
Translates to: TSSTNDDSPGLNLES*KPAVLFSRSLRSQL
Trigger: CAGCTGGCTCCGCAAAGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTCGAGGTTCAAGCCTGGAGAGTCATCGTTTGTGGAGGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGTCCATTTTCCAGTCTaGGTGTTGGTTGTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRVHFPV*VLVVSR
Trigger: CCTGGAGACAACCAACACCAAGACTGGAAAATGGAC...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTGGCAAACATCACATaGTATAGCTTGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGLANIT*YSLPSM
Trigger: CATGCTGGGCAAGCTATACAATGTGATGTTTGCCAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp TCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGGGGTTCTGCTCATGCACATaGGATTCACAGTTACGGCTA +
Preference number: 5 (lower is better)
Translates to: SSVRGMEGTLGLCGAWRGFCSCT*DSQLRL
Trigger: TAGCCGTAACTGTGAATCCAATGTGCATGAGCAGAA...CCCCCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGAAGGACAGCTTGCAGTaGCTTGTTCTGAACGGTGTC +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRKDSLQ*LVLNGV
Trigger: GACACCGTTCAGAACAAGCAACTGCAAGCTGTCCTT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACCACTGAAGGACAGCTaGCAGTTGCTTGTTCTGAAC +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAPLKDS*QLLVLN
Trigger: GTTCAGAACAAGCAACTGCAAGCTGTCCTTCAGTGG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTACAAAATAGGGACATaGAGCTCTGAGGCAGCCACC +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRYKIGT*SSEAAT
Trigger: GGTGGCTGCCTCAGAGCTCAATGTCCCTATTTTGTA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 90 bp CCACTGGGTAAGCCACTTCCTCCACAAACGATGACTCTCCAGGCTTaGACCTCGAGTCCTGGAAGCCCGCTGTACTTTTCTCCAGGTCTT +
Preference number: 5 (lower is better)
Translates to: PLGKPLPPQTMTLQA*TSSPGSPLYFSPGL
Trigger: AAGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTCGAGGTTCAAGCCTGGAGAGTCATCGTTTGTGGAGGAAGTGGCTTACCCAGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTCGGACAGGATCTGTaGATGTGTCCATTTTCCAGT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLGQDL*MCPFSS
Trigger: ACTGGAAAATGGACACATCAACAGATCCTGTCCGAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAATCACATTGTATAGCTaGCCCAGCATGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAITLYS*PSMASM
Trigger: CATGGATGCCATGCTGGGCAAGCTATACAATGTGAT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGATCACATTGTATAGCTaGCCCAGCATGGCATCCATG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRITLYS*PSMASM
Trigger: CATGGATGCCATGCTGGGCAAGCTATACAATGTGAT...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCAAGCCAGGAGATTTTaGCTGACTCTTGTGCCACAT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRQARRF*LTLVPH
Trigger: ATGTGGCACAAGAGTCAGCAAAAATCTCCTGGCTTG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCACAAGCCAGGAGATTTTaGCTGACTCTTGTGCCACAT +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAQARRF*LTLVPH
Trigger: ATGTGGCACAAGAGTCAGCAAAAATCTCCTGGCTTG...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 90 bp CCTGGAAGCCCGCTGTACTTTTCTCCAGGTCTTTGCGGAGCCAGCTaGGCACTCGGACAGGATCTGTTGATGTGTCCATTTTCCAGTCTT +
Preference number: 5 (lower is better)
Translates to: PGSPLYFSPGLCGAS*ALGQDLLMCPFSSL
Trigger: AAGACTGGAAAATGGACACATCAACAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAGACCTGGAGAAAAGTACAGCGGGCTTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp GTCTCCAGAGCCGGGAGCTTTGTCACTGGAAATGTTCTTGGAACATaGGGTGACTGTCTCGTTCACGAGCTCAGAGGCCACTGTACTCAA +
Preference number: 5 (lower is better)
Translates to: VSRAGSFVTGNVLGT*GDCLVHELRGHCTQ
Trigger: TTGAGTACAGTGGCCTCTGAGCTCGTGAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp GAACTACAGGAGAAGGAGGAGGTGGCTTGTTGGTGGGAAAATTGGTaGTGGCAGCAGCTTCCAGGAAGCTCTGAGCATCCATCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: ELQEKEEVACWWENW*WQQLPGSSEHPSFL
Trigger: GAGGAAAGATGGATGCTCAGAGCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCTGTAGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp TGCACTCATCCTGAACTACAGGAGAAGGAGGAGGTGGCTTGTTGGTaGGAAAATTGGTGCTGGCAGCAGCTTCCAGGAAGCTCTGAGCAT +
Preference number: 5 (lower is better)
Translates to: CTHPELQEKEEVACW*ENWCWQQLPGSSEH
Trigger: ATGCTCAGAGCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCTGTAGTTCAGGATGAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp GTTTGCACTCATCCTGAACTACAGGAGAAGGAGGAGGTGGCTTGTTaGTGGGAAAATTGGTGCTGGCAGCAGCTTCCAGGAAGCTCTGAG +
Preference number: 5 (lower is better)
Translates to: VCTHPELQEKEEVAC*WENWCWQQLPGSSE
Trigger: CTCAGAGCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCTGTAGTTCAGGATGAGTGCAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp TCAGGTGCTCCACCATCTGCCCATTCATACAGTTGTCTAGCTGGTTaGCAACCATCTTGGTTAGCCCAGATAAGGCACCACCAGTGGCCT +
Preference number: 5 (lower is better)
Translates to: SGAPPSAHSYSCLAG*QPSWLAQIRHHQWP
Trigger: AGGCCACTGGTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTTGGCAAACATCACATaGTATAGCTTGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLANIT*YSLPSM
Trigger: CATGCTGGGCAAGCTATACAATGTGATGTTTGCCAA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTGGCAAACATCACATaGTATAGCTTGCCCAGCATG +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGALANIT*YSLPSM
Trigger: CATGCTGGGCAAGCTATACAATGTGATGTTTGCCAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATCTTGGTCACATATCTaGTGGGGAGGAGACTTAAGT +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGASWSHI*WGGDLS
Trigger: ACTTAAGTCTCCTCCCCACAAGATATGTGACCAAGA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTCTTGGTCACATATCTaGTGGGGAGGAGACTTAAGT +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRSWSHI*WGGDLS
Trigger: ACTTAAGTCTCCTCCCCACAAGATATGTGACCAAGA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATTCTGCTCATGCACATaGGATTCACAGTTACGGCTA +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAFCSCT*DSQLRL
Trigger: TAGCCGTAACTGTGAATCCAATGTGCATGAGCAGAA...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGTTCTGCTCATGCACATaGGATTCACAGTTACGGCTA +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRFCSCT*DSQLRL
Trigger: TAGCCGTAACTGTGAATCCAATGTGCATGAGCAGAA...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp TCCATCAGGTGCTCCACCATCTGCCCATTCATACAGTTGTCTAGCTaGTTGGCAACCATCTTGGTTAGCCCAGATAAGGCACCACCAGTG +
Preference number: 5 (lower is better)
Translates to: SIRCSTICPFIQLSS*LATILVSPDKAPPV
Trigger: CACTGGTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGATGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp ATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCATGGAGGCTTTTCTGTTTGTTCTaGGTCACATATCTTGTGGGG +
Preference number: 5 (lower is better)
Translates to: MSSVRGMEGTLGLCGAWRLFCLF*VTYLVG
Trigger: CCCCACAAGATATGTGACCAAGAACAAACAGAAAAG...CCTCCATGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 90 bp CACCACGCTGTTGGCGTAGGTCATGATCCCTTGACTGATAGAGTTTaGAAAGTCATCAGGCCTGTTGTCGGGGCTGGTCCTGAACAGTTT +
Preference number: 5 (lower is better)
Translates to: HHAVGVGHDPLTDRV*KVIRPVVGAGPEQF
Trigger: AAACTGTTCAGGACCAGCCCCGACAACAGGCCTGATGACTTTTCAAACTCTATCAGTCAAGGGATCATGACCTACGCCAACAGCGTGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp ATCCTCACAGAATTTCGGGGCAGGCGGGGTAATAGGCCTTTCACATaGAGTCTTAGGCCTTTCACACGGGTGTATCTCTTCTTCCTGAGT +
Preference number: 5 (lower is better)
Translates to: ILTEFRGRRGNRPFT*SLRPFTRVYLFFLS
Trigger: ACTCAGGAAGAAGAGATACACCCGTGTGAAAGGCCTAAGACTCCATGTGAAAGGCCTATTACCCCGCCTGCCCCGAAATTCTGTGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 90 bp CCATTACCAACATGGGAAATGAGGCCCTGGGAAGGGTTCTCCTTGTaGGACATCTCAAAATGCAATCTTCCTGGACTGCCCTTGTTGGTG +
Preference number: 5 (lower is better)
Translates to: PLPTWEMRPWEGFSL*DISKCNLPGLPLLV
Trigger: CACCAACAAGGGCAGTCCAGGAAGATTGCATTTTGAGATGTCTCACAAGGAGAACCCTTCCCAGGGCCTCATTTCCCATGTTGGTAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS-3UTR CAA 90 bp GATGGCATGTCTAGTGTGCGTGGCATGGAGGGGACTTTAGGGCTCTGTGGGGCAAAGTTCCGGATAAAATaGAAGATGACACTCATCAGA +
Preference number: 5 (lower is better)
Translates to: DGMSSVRGMEGTLGLCGAKFRIK*KMTLIR
Trigger: TCTGATGAGTGTCATCTTCAATTTTATCCGGAACTT...TGCCCCACAGAGCCCTAAAGTCCCCTCCATGCCACGCACACTAGACATGCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp GACTTGGCAATAATGAGGCATAACTTCATCACCGAGTCCATCAGGTaGTCCACCATCTGCCCATTCATACAGTTGTCTAGCTGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: DLAIMRHNFITESIR*STICPFIQLSSWLA
Trigger: TGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGATGGACTCGGTGATGAAGTTATGCCTCATTATTGCCAAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 90 bp TCCAGTCTTGGTGTTGGTTGTCTCCAGGTGAATAGACACCAACTTTaGAAACGCCACTTTGACTTTGTAACCAGTCAACCCTATCCGCCA +
Preference number: 5 (lower is better)
Translates to: SSLGVGCLQVNRHQL*KRHFDFVTSQPYPP
Trigger: TGGCGGATAGGGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAAAGTTGGTGTCTATTCACCTGGAGACAACCAACACCAAGACTGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp TGTGAGACATCTCAAAATGCAATCTTCCTGGACTGCCCTTGTTGGTaGTATTGTAATAATCAACACAGAAACCTTTTCGTTGGTCCACTG +
Preference number: 5 (lower is better)
Translates to: CETSQNAIFLDCPCW*YCNNQHRNLFVGPL
Trigger: CAGTGGACCAACGAAAAGGTTTCTGTGTTGATTATTACAATACCACCAACAAGGGCAGTCCAGGAAGATTGCATTTTGAGATGTCTCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp CCTTGTGAGACATCTCAAAATGCAATCTTCCTGGACTGCCCTTGTTaGTGGTATTGTAATAATCAACACAGAAACCTTTTCGTTGGTCCA +
Preference number: 5 (lower is better)
Translates to: PCETSQNAIFLDCPC*WYCNNQHRNLFVGP
Trigger: TGGACCAACGAAAAGGTTTCTGTGTTGATTATTACAATACCACCAACAAGGGCAGTCCAGGAAGATTGCATTTTGAGATGTCTCACAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 90 bp AAATTGAAGATGACACTCATCAGATCTTTCTTTTCTGTTTGTTCTTaGTCACATATCTTGTGGGGAGGAGACTTAAGTTTGCACTCATCC +
Preference number: 5 (lower is better)
Translates to: KLKMTLIRSFFSVCS*SHILWGGDLSLHSS
Trigger: GGATGAGTGCAAACTTAAGTCTCCTCCCCACAAGATATGTGACCAAGAACAAACAGAAAAGAAAGATCTGATGAGTGTCATCTTCAATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp CGTACCTCAGCACCGACTGCAGAACCTCCCCGACGCTaGGGCCTTTCTCCACGGCAGTGGCTGAGAGCTGAA +
Preference number: 6 (lower is better)
Translates to: RTSAPTAEPPRR*GLSPRQWLRAE
Trigger: TTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp TCCAGCTGTCGCTCCTTCTCGTACCTCAGCACCGACTaGAGAACCTCCCCGACGCTGCGGCCTTTCTCCACG +
Preference number: 6 (lower is better)
Translates to: SSCRSFSYLSTD*RTSPTLRPFST
Trigger: CGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTCTGCAGTCGGTGCTGAGGTACGAGAAGGAGCGACAGCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp CTCCCCGACGCTGCGGCCTTTCTCCACGGCAGTGGCTaGGAGCTGAAGCAGCTTCTCCTGGATTCCTTCATC +
Preference number: 6 (lower is better)
Translates to: LPDAAAFLHGSG*ELKQLLLDSFI
Trigger: GATGAAGGAATCCAGGAGAAGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp GAACCTCCCCGACGCTGCGGCCTTTCTCCACGGCAGTaGCTGAGAGCTGAAGCAGCTTCTCCTGGATTCCTT +
Preference number: 6 (lower is better)
Translates to: EPPRRCGLSPRQ*LRAEAASPGFL
Trigger: AAGGAATCCAGGAGAAGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGTCGGGGAGGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp GGGGCCTGTGACGACCCCGAGGCCCTGTCTCCAGAGCCGGGAGCTTaGTCACTGGAAATGTTCTTGGAACATGCGGTGACTGTCTCGTTC +
Preference number: 6 (lower is better)
Translates to: GACDDPEALSPEPGA*SLEMFLEHAVTVSF
Trigger: GAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGACAGGGCCTCGGGGTCGTCACAGGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp ACGCTGCGGCCTTTCTCCACGGCAGTGGCTGAGAGCTaGAGCAGCTTCTCCTGGATTCCTTCATCGTCACCA +
Preference number: 6 (lower is better)
Translates to: TLRPFSTAVAES*SSFSWIPSSSP
Trigger: TGGTGACGATGAAGGAATCCAGGAGAAGCTGCTTCAGCTCTCAGCCACTGCCGTGGAGAAAGGCCGCAGCGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp GACGACCCCGAGGCCCTGTCTCCAGAGCCGGGAGCTTaGTCACTGGAAATGTTCTTGGAACATGCGGTGACT +
Preference number: 6 (lower is better)
Translates to: DDPEALSPEPGA*SLEMFLEHAVT
Trigger: AGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGACAGGGCCTCGGGGTCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp GAGGCCCTGTCTCCAGAGCCGGGAGCTTTGTCACTGGAAATGTTCTaGGAACATGCGGTGACTGTCTCGTTCACGAGCTCAGAGGCCACT +
Preference number: 6 (lower is better)
Translates to: EALSPEPGALSLEMF*EHAVTVSFTSSEAT
Trigger: AGTGGCCTCTGAGCTCGTGAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGACAGGGCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp GCTTGTTCTGAACGGTGTCAGCCAGATTGTGGTTGCTaGCGATCACCTTGGGGATTTCACAGCCCTCGGGGG +
Preference number: 6 (lower is better)
Translates to: ACSERCQPDCGC*RSPWGFHSPRG
Trigger: CCCCCGAGGGCTGTGAAATCCCCAAGGTGATCGTCAGCAACCACAATCTGGCTGACACCGTTCAGAACAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp GAGTCCTGGAAGCCCGCTGTACTTTTCTCCAGGTCTTaGCGGAGCCAGCTGAGCACTCGGACAGGATCTGTT +
Preference number: 6 (lower is better)
Translates to: ESWKPAVLFSRS*RSQLSTRTGSV
Trigger: AACAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp TTGAACCTCGAGTCCTGGAAGCCCGCTGTACTTTTCTCCAGGTCTTaGCGGAGCCAGCTGAGCACTCGGACAGGATCTGTTGATGTGTCC +
Preference number: 6 (lower is better)
Translates to: LNLESWKPAVLFSRS*RSQLSTRTGSVDVS
Trigger: GGACACATCAACAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTCGAGGTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp GCCGGGAGCTTTGTCACTGGAAATGTTCTTGGAACATaGGGTGACTGTCTCGTTCACGAGCTCAGAGGCCAC +
Preference number: 6 (lower is better)
Translates to: AGSFVTGNVLGT*GDCLVHELRGH
Trigger: GTGGCCTCTGAGCTCGTGAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp AAGTCTGTGTCAGTCATGAGGCTTCCCGTGACGCCGTaGAGGTTCTTCATGAAGGAGTCGATGAGGTCGGAG +
Preference number: 6 (lower is better)
Translates to: KSVSVMRLPVTP*RFFMKESMRSE
Trigger: CTCCGACCTCATCGACTCCTTCATGAAGAACCTCCACGGCGTCACGGGAAGCCTCATGACTGACACAGACTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp CGTTCTGCAGGAGGGCTTCAGCTGTCCCTGTGCCCTTaGCTGGTAGGCACTCATATAAGTTATCTGGGAAGG +
Preference number: 6 (lower is better)
Translates to: RSAGGLQLSLCP*LVGTHISYLGR
Trigger: CCTTCCCAGATAACTTATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGCTGAAGCCCTCCTGCAGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp GCTGTCCTGACAAACCTCTCAGTTCATTATGGATGGTaGGGTAGGCGTTCTGCAGGAGGGCTTCAGCTGTCC +
Preference number: 6 (lower is better)
Translates to: AVLTNLSVHYGW*GRRSAGGLQLS
Trigger: GGACAGCTGAAGCCCTCCTGCAGAACGCCTACCTCACCATCCATAATGAACTGAGAGGTTTGTCAGGACAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp ACAAACGATGACTCTCCAGGCTTGAACCTCGAGTCCTaGAAGCCCGCTGTACTTTTCTCCAGGTCTTTGCGG +
Preference number: 6 (lower is better)
Translates to: TNDDSPGLNLES*KPAVLFSRSLR
Trigger: CCGCAAAGACCTGGAGAAAAGTACAGCGGGCTTCCAGGACTCGAGGTTCAAGCCTGGAGAGTCATCGTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp GTTTTTGATCTCCTGGTAAGGACCTCCCGCCCTCCTTaGCATCTCCTGCATTCCGGGACTCAAACACTTCCT +
Preference number: 6 (lower is better)
Translates to: VFDLLVRTSRPP*HLLHSGTQTLP
Trigger: AGGAAGTGTTTGAGTCCCGGAATGCAGGAGATGCCAAGGAGGGCGGGAGGTCCTTACCAGGAGATCAAAAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp AAGGAGGAGGTGGCTTGTTGGTGGGAAAATTGGTGCTaGCAGCAGCTTCCAGGAAGCTCTGAGCATCCATCT +
Preference number: 6 (lower is better)
Translates to: KEEVACWWENWC*QQLPGSSEHPS
Trigger: AGATGGATGCTCAGAGCTTCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp CATCCTGAACTACAGGAGAAGGAGGAGGTGGCTTGTTaGTGGGAAAATTGGTGCTGGCAGCAGCTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: HPELQEKEEVAC*WENWCWQQLPG
Trigger: TCCTGGAAGCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCTGTAGTTCAGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCCTCTCCCAGCTCCGACAGGGGAGAGTCACAGGACTaGGCAATAATGAGGCATAACTTCATCACCGAGTCC +
Preference number: 6 (lower is better)
Translates to: SSPSSDRGESQD*AIMRHNFITES
Trigger: GGACTCGGTGATGAAGTTATGCCTCATTATTGCCAAGTCCTGTGACTCTCCCCTGTCGGAGCTGGGAGAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp GCGTTCTGCAGGAGGGCTTCAGCTGTCCCTGTGCCCTaGACTGGTAGGCACTCATATAAGTTATCTGGGAAG +
Preference number: 6 (lower is better)
Translates to: AFCRRASAVPVP*TGRHSYKLSGK
Trigger: CTTCCCAGATAACTTATATGAGTGCCTACCAGTCAAGGGCACAGGGACAGCTGAAGCCCTCCTGCAGAACGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp ATCAGGTGCTCCACCATCTGCCCATTCATACAGTTGTCTAGCTGGTaGGCAACCATCTTGGTTAGCCCAGATAAGGCACCACCAGTGGCC +
Preference number: 6 (lower is better)
Translates to: IRCSTICPFIQLSSW*ATILVSPDKAPPVA
Trigger: GGCCACTGGTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp CCACACTTTTCCTCTCCCAGCTCCGACAGGGGAGAGTCACAGGACTaGGCAATAATGAGGCATAACTTCATCACCGAGTCCATCAGGTGC +
Preference number: 6 (lower is better)
Translates to: PHFSSPSSDRGESQD*AIMRHNFITESIRC
Trigger: GCACCTGATGGACTCGGTGATGAAGTTATGCCTCATTATTGCCAAGTCCTGTGACTCTCCCCTGTCGGAGCTGGGAGAGGAAAAGTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp CCGCTGTACTTTTCTCCAGGTCTTTGCGGAGCCAGCTaGGCACTCGGACAGGATCTGTTGATGTGTCCATTT +
Preference number: 6 (lower is better)
Translates to: PLYFSPGLCGAS*ALGQDLLMCPF
Trigger: AAATGGACACATCAACAGATCCTGTCCGAGTGCTCAGCTGGCTCCGCAAAGACCTGGAGAAAAGTACAGCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp TTCCAGGAAGCTCTGAGCATCCATCTTTCCTCCCTGTaGCAGGTGATACTGAATCAGAAGCAGGGCGGATAC +
Preference number: 6 (lower is better)
Translates to: FQEALSIHLSSL*QVILNQKQGGY
Trigger: GTATCCGCCCTGCTTCTGATTCAGTATCACCTGGCACAGGGAGGAAAGATGGATGCTCAGAGCTTCCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp TTGCGTGCTTCATCAGCACCTTCTTCAGCAGAATCGTaGCGATGGTTGTGTCCTTCACCTGGATCTTCAGCG +
Preference number: 6 (lower is better)
Translates to: LRASSAPSSAES*RWLCPSPGSSA
Trigger: CGCTGAAGATCCAGGTGAAGGACACAACCATCGCCACGATTCTGCTGAAGAAGGTGCTGATGAAGCACGCAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp TTTGCACTCATCCTGAACTACAGGAGAAGGAGGAGGTaGCTTGTTGGTGGGAAAATTGGTGCTGGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: FALILNYRRRRR*LVGGKIGAGSS
Trigger: GCTGCTGCCAGCACCAATTTTCCCACCAACAAGCCACCTCCTCCTTCTCCTGTAGTTCAGGATGAGTGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp CATATAAGTTATCTGGGAAGGCAGAATTTGGCCGGCTaGCATCCCCACACTTTTCCTCTCCCAGCTCCGACA +
Preference number: 6 (lower is better)
Translates to: HISYLGRQNLAG*HPHTFPLPAPT
Trigger: TGTCGGAGCTGGGAGAGGAAAAGTGTGGGGATGCCAGCCGGCCAAATTCTGCCTTCCCAGATAACTTATATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCGTTCACGAGCTCAGAGGCCACTGTACTCAAGCTTTaGTGGGGTGTGGGCTCATCCCCCATATACAATGAC +
Preference number: 6 (lower is better)
Translates to: SFTSSEATVLKL*WGVGSSPIYND
Trigger: GTCATTGTATATGGGGGATGAGCCCACACCCCACAAAAGCTTGAGTACAGTGGCCTCTGAGCTCGTGAACGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCTCCAGAGCCGGGAGCTTTGTCACTGGAAATGTTCTaGGAACATGCGGTGACTGTCTCGTTCACGAGCTCA +
Preference number: 6 (lower is better)
Translates to: SPEPGALSLEMF*EHAVTVSFTSS
Trigger: TGAGCTCGTGAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTCCCGGCTCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp CAAAATTCTCTGGTGGCTGAGGTTGGTGAGGAGGGTTaGCCTCACAAGGATCTGGGCACTCAAAGGAGACCT +
Preference number: 6 (lower is better)
Translates to: QNSLVAEVGEEG*PHKDLGTQRRP
Trigger: AGGTCTCCTTTGAGTGCCCAGATCCTTGTGAGGCAAACCCTCCTCACCAACCTCAGCCACCAGAGAATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp ACCATCTGCCCATTCATACAGTTGTCTAGCTGGTTGGCAACCATCTaGGTTAGCCCAGATAAGGCACCACCAGTGGCCTCCTCATCCTCA +
Preference number: 6 (lower is better)
Translates to: TICPFIQLSSWLATI*VSPDKAPPVASSSS
Trigger: TGAGGATGAGGAGGCCACTGGTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp CTCTCCGACTTGTCCCTGGCTCTCCGGATGTTCTCAGGGAATTTCTaGGCAAACATCACATTGTATAGCTTGCCCAGCATGGCATCCATG +
Preference number: 6 (lower is better)
Translates to: LSDLSLALRMFSGNF*ANITLYSLPSMASM
Trigger: CATGGATGCCATGCTGGGCAAGCTATACAATGTGATGTTTGCCAAGAAATTCCCTGAGAACATCCGGAGAGCCAGGGACAAGTCGGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp ATCACCGAGTCCATCAGGTGCTCCACCATCTGCCCATTCATACAGTaGTCTAGCTGGTTGGCAACCATCTTGGTTAGCCCAGATAAGGCA +
Preference number: 6 (lower is better)
Translates to: ITESIRCSTICPFIQ*SSWLATILVSPDKA
Trigger: TGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGATGGACTCGGTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp ACATGGGAAATGAGGCCCTGGGAAGGGTTCTCCTTGTaGGACATCTCAAAATGCAATCTTCCTGGACTGCCC +
Preference number: 6 (lower is better)
Translates to: TWEMRPWEGFSL*DISKCNLPGLP
Trigger: GGGCAGTCCAGGAAGATTGCATTTTGAGATGTCTCACAAGGAGAACCCTTCCCAGGGCCTCATTTCCCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp CTTCGTCTATGGAACCCCCATTACCAACATGGGAAATaGGGCCCTGGGAAGGGTTCTCCTTGTGAGACATCT +
Preference number: 6 (lower is better)
Translates to: LRLWNPHYQHGK*GPGKGSPCETS
Trigger: AGATGTCTCACAAGGAGAACCCTTCCCAGGGCCTCATTTCCCATGTTGGTAATGGGGGTTCCATAGACGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp GAGCTTTGTCACTGGAAATGTTCTTGGAACATGCGGTaGCTGTCTCGTTCACGAGCTCAGAGGCCACTGTAC +
Preference number: 6 (lower is better)
Translates to: ELCHWKCSWNMR*LSRSRAQRPLY
Trigger: GTACAGTGGCCTCTGAGCTCGTGAACGAGACAGTCACCGCATGTTCCAAGAACATTTCCAGTGACAAAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp GTTGGCGTAGGTCATGATCCCTTGACTGATAGAGTTTaGAAAGTCATCAGGCCTGTTGTCGGGGCTGGTCCT +
Preference number: 6 (lower is better)
Translates to: VGVGHDPLTDRV*KVIRPVVGAGP
Trigger: AGGACCAGCCCCGACAACAGGCCTGATGACTTTTCAAACTCTATCAGTCAAGGGATCATGACCTACGCCAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp GCTTCATCAGCACCTTCTTCAGCAGAATCGTGGCGATaGTTGTGTCCTTCACCTGGATCTTCAGCGTCTTCA +
Preference number: 6 (lower is better)
Translates to: ASSAPSSAESWR*LCPSPGSSASS
Trigger: TGAAGACGCTGAAGATCCAGGTGAAGGACACAACCATCGCCACGATTCTGCTGAAGAAGGTGCTGATGAAGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp CCACCATCTGCCCATTCATACAGTTGTCTAGCTGGTTaGCAACCATCTTGGTTAGCCCAGATAAGGCACCAC +
Preference number: 6 (lower is better)
Translates to: PPSAHSYSCLAG*QPSWLAQIRHH
Trigger: GTGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCCATCAGGTGCTCCACCATCTGCCCATTCATACAGTaGTCTAGCTGGTTGGCAACCATCTTGGTTAGCCCA +
Preference number: 6 (lower is better)
Translates to: SIRCSTICPFIQ*SSWLATILVSP
Trigger: TGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGATGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp GTAGGCACTCATATAAGTTATCTGGGAAGGCAGAATTaGGCCGGCTGGCATCCCCACACTTTTCCTCTCCCA +
Preference number: 6 (lower is better)
Translates to: VGTHISYLGRQN*AGWHPHTFPLP
Trigger: TGGGAGAGGAAAAGTGTGGGGATGCCAGCCGGCCAAATTCTGCCTTCCCAGATAACTTATATGAGTGCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS TCA 72 bp AGTTTTGCGGCACGCTCCAAGCCAGGAGATTTTTGCTaGCTCTTGTGCCACATGTGCAGTCCCTCCTTAATA +
Preference number: 6 (lower is better)
Translates to: SFAARSKPGDFC*LLCHMCSPSLI
Trigger: TATTAAGGAGGGACTGCACATGTGGCACAAGAGTCAGCAAAAATCTCCTGGCTTGGAGCGTGCCGCAAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp TGCTCCACCATCTGCCCATTCATACAGTTGTCTAGCTaGTTGGCAACCATCTTGGTTAGCCCAGATAAGGCA +
Preference number: 6 (lower is better)
Translates to: CSTICPFIQLSS*LATILVSPDKA
Trigger: TGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCCACCATCTGCCCATTCATACAGTTGTCTAGCTGGTaGGCAACCATCTTGGTTAGCCCAGATAAGGCACCA +
Preference number: 6 (lower is better)
Translates to: STICPFIQLSSW*ATILVSPDKAP
Trigger: TGGTGCCTTATCTGGGCTAACCAAGATGGTTGCCAACCAGCTAGACAACTGTATGAATGGGCAGATGGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TGGACACATTTGTTTTCAGCGCCGTGGATCTTCTCATaGATCTCCTTTCGGGCCATGGCGATCACTAGGTTT +
Preference number: 6 (lower is better)
Translates to: WTHLFSAPWIFS*ISFRAMAITRF
Trigger: AAACCTAGTGATCGCCATGGCCCGAAAGGAGATCAATGAGAAGATCCACGGCGCTGAAAACAAATGTGTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TTGTCGTCTGGACACTTGCCTTCCTTTGTACTCTCCTaGATCTTCAGAGTGCTCGTGTATCTTAGACCAGGG +
Preference number: 6 (lower is better)
Translates to: LSSGHLPSFVLS*IFRVLVYLRPG
Trigger: CCCTGGTCTAAGATACACGAGCACTCTGAAGATCAAGGAGAGTACAAAGGAAGGCAAGTGTCCAGACGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp AAAGACTTCTTAGTGCCGGGCTTGTCGTCTGGACACTaGCCTTCCTTTGTACTCTCCTTGATCTTCAGAGTG +
Preference number: 6 (lower is better)
Translates to: KDFLVPGLSSGH*PSFVLSLIFRV
Trigger: CACTCTGAAGATCAAGGAGAGTACAAAGGAAGGCAAGTGTCCAGACGACAAGCCCGGCACTAAGAAGTCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp CTGGCTCTCCGGATGTTCTCAGGGAATTTCTTGGCAAACATCACATaGTATAGCTTGCCCAGCATGGCATCCATGATATCTGTGGCCTTT +
Preference number: 6 (lower is better)
Translates to: LALRMFSGNFLANIT*YSLPSMASMISVAF
Trigger: AAAGGCCACAGATATCATGGATGCCATGCTGGGCAAGCTATACAATGTGATGTTTGCCAAGAAATTCCCTGAGAACATCCGGAGAGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 90 bp CGGATGTTCTCAGGGAATTTCTTGGCAAACATCACATTGTATAGCTaGCCCAGCATGGCATCCATGATATCTGTGGCCTTTTGGCTTCCA +
Preference number: 6 (lower is better)
Translates to: RMFSGNFLANITLYS*PSMASMISVAFWLP
Trigger: TGGAAGCCAAAAGGCCACAGATATCATGGATGCCATGCTGGGCAAGCTATACAATGTGATGTTTGCCAAGAAATTCCCTGAGAACATCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp GGTGTTGGTTGTCTCCAGGTGAATAGACACCAACTTTaGAAACGCCACTTTGACTTTGTAACCAGTCAACCC +
Preference number: 6 (lower is better)
Translates to: GVGCLQVNRHQL*KRHFDFVTSQP
Trigger: GGGTTGACTGGTTACAAAGTCAAAGTGGCGTTTGCAAAGTTGGTGTCTATTCACCTGGAGACAACCAACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS GCA 72 bp ATAATGAGGCATAACTTCATCACCGAGTCCATCAGGTaGTCCACCATCTGCCCATTCATACAGTTGTCTAGC +
Preference number: 6 (lower is better)
Translates to: IMRHNFITESIR*STICPFIQLSS
Trigger: GCTAGACAACTGTATGAATGGGCAGATGGTGGAGCACCTGATGGACTCGGTGATGAAGTTATGCCTCATTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp ACACATAAAATTTGCAAAATTCTCTGGTGGCTGAGGTaGGTGAGGAGGGTTTGCCTCACAAGGATCTGGGCA +
Preference number: 6 (lower is better)
Translates to: THKICKILWWLR*VRRVCLTRIWA
Trigger: TGCCCAGATCCTTGTGAGGCAAACCCTCCTCACCAACCTCAGCCACCAGAGAATTTTGCAAATTTTATGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TCAGGGAATTTCTTGGCAAACATCACATTGTATAGCTaGCCCAGCATGGCATCCATGATATCTGTGGCCTTT +
Preference number: 6 (lower is better)
Translates to: SGNFLANITLYS*PSMASMISVAF
Trigger: AAAGGCCACAGATATCATGGATGCCATGCTGGGCAAGCTATACAATGTGATGTTTGCCAAGAAATTCCCTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TGCTCATGCACATTGGATTCACAGTTACGGCTACTCTaGAATATGGTCTCGCTGAGTAAGTTCCGGATAAAA +
Preference number: 6 (lower is better)
Translates to: CSCTLDSQLRLL*NMVSLSKFRIK
Trigger: TTTTATCCGGAACTTACTCAGCGAGACCATATTCAAGAGTAGCCGTAACTGTGAATCCAATGTGCATGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CCA 72 bp ACATCTCAAAATGCAATCTTCCTGGACTGCCCTTGTTaGTGGTATTGTAATAATCAACACAGAAACCTTTTC +
Preference number: 6 (lower is better)
Translates to: TSQNAIFLDCPC*WYCNNQHRNLF
Trigger: GAAAAGGTTTCTGTGTTGATTATTACAATACCACCAACAAGGGCAGTCCAGGAAGATTGCATTTTGAGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4
CDS CAA 72 bp TTGAATATGGTCTCGCTGAGTAAGTTCCGGATAAAATaGAAGATGACACTCATCAGATCTTTCTTTTCTGTT +
Preference number: 6 (lower is better)
Translates to: LNMVSLSKFRIK*KMTLIRSFFSV
Trigger: AACAGAAAAGAAAGATCTGATGAGTGTCATCTTCAATTTTATCCGGAACTTACTCAGCGAGACCATATTCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000095440.9
ENSMUST00000202574.2
ENSMUST00000202878.4