RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AKAP14 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036551

Ensembl transcript IDs: ENSMUST00000046557.6

Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TGGTGCAACTGGCGCAACGGGCAGAGCAGGTGCGACTGGTGCAACTaGAGCAGCAGGCACAACTGGTGCAGCAGGCGCAACGGGCGCAGC +
Preference number: 5 (lower is better)
Translates to: WCNWRNGQSRCDWCN*SSRHNWCSRRNGRS
Trigger: GCTGCGCCCGTTGCGCCTGCTGCACCAGTTGTGCCTGCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp CACAGCTGGTGCAACTGGCACAGCTGGCGCAACGGGCAGAGCAGGTaGAACTGGTGCAACTGGCGCAACGGGCAGAGCAGGTGCGACTGG +
Preference number: 5 (lower is better)
Translates to: HSWCNWHSWRNGQSR*NWCNWRNGQSRCDW
Trigger: CCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp TGGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAACTGGTGCAACTaGCGCAACGGGCAGAGCAGGTGCGACTGGTGCAACTGGAGCAGC +
Preference number: 5 (lower is better)
Translates to: WHSWRNGQSRCNWCN*RNGQSRCDWCNWSS
Trigger: GCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp TGCAACTGGTGCAACTGGCGCAACGGGCAGAGCAGGTGCGACTGGTaGAACTGGAGCAGCAGGCACAACTGGTGCAGCAGGCGCAACGGG +
Preference number: 5 (lower is better)
Translates to: CNWCNWRNGQSRCDW*NWSSRHNWCSRRNG
Trigger: CCCGTTGCGCCTGCTGCACCAGTTGTGCCTGCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp TGCAACTGGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAACTGGTaGAACTGGCGCAACGGGCAGAGCAGGTGCGACTGGTGCAACTGG +
Preference number: 5 (lower is better)
Translates to: CNWHSWRNGQSRCNW*NWRNGQSRCDWCNW
Trigger: CCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp AGGCACAACTGGTGCAGCAGGCGCAACGGGCGCAGCAGGCACAACTaGCACAGCAGGTGCAACAGGCGCAACTGGCGTAACAGGTGCAGC +
Preference number: 5 (lower is better)
Translates to: RHNWCSRRNGRSRHN*HSRCNRRNWRNRCS
Trigger: GCTGCACCTGTTACGCCAGTTGCGCCTGTTGCACCTGCTGTGCCAGTTGTGCCTGCTGCGCCCGTTGCGCCTGCTGCACCAGTTGTGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp CAGAGCAGGTGCAACTGGTGCAACTGGCGCAACGGGCAGAGCAGGTaGGACTGGTGCAACTGGAGCAGCAGGCACAACTGGTGCAGCAGG +
Preference number: 5 (lower is better)
Translates to: QSRCNWCNWRNGQSR*DWCNWSSRHNWCSR
Trigger: CCTGCTGCACCAGTTGTGCCTGCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp TGGCACAACTGGTGCAACTGGCACAGCTGGTGCAACTGGCACAGCTaGCGCAACGGGCAGAGCAGGTGCAACTGGTGCAACTGGCGCAAC +
Preference number: 5 (lower is better)
Translates to: WHNWCNWHSWCNWHS*RNGQSRCNWCNWRN
Trigger: GTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp GGCGCAACAGGCTTTGCAGGCGCAACAGGCTTTGCAGGTGCAGCATaGTCAGTATGCGCAACAGGCGGAGCATGCGGAACATGCGCAACT +
Preference number: 5 (lower is better)
Translates to: GATGFAGATGFAGAA*SVCATGGACGTCAT
Trigger: AGTTGCGCATGTTCCGCATGCTCCGCCTGTTGCGCATACTGAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp CGCAACAGGCGCAACAGGCTTTGCAGGCGCAACAGGCTTTGCAGGTaGAGCATGCTCAGTATGCGCAACAGGCGGAGCATGCGGAACATG +
Preference number: 5 (lower is better)
Translates to: RNRRNRLCRRNRLCR*SMLSMRNRRSMRNM
Trigger: CATGTTCCGCATGCTCCGCCTGTTGCGCATACTGAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp AACAGGCGCAACAGGCTTTGCAGGCGCAACAGGCGCAACAGGCTTTaGAGGCGCAACAGGCTTTGCAGGTGCAGCATGCTCAGTATGCGC +
Preference number: 5 (lower is better)
Translates to: NRRNRLCRRNRRNRL*RRNRLCRCSMLSMR
Trigger: GCGCATACTGAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS TCA 90 bp AGGCGCAACTGGCGTAACAGGTGCAGCAGGTACAGCACGCACAACTaGTGTAACAGGTGCAGCAGGCGCAACAGGCTTTGCAGGCGCAAC +
Preference number: 5 (lower is better)
Translates to: RRNWRNRCSRYSTHN*CNRCSRRNRLCRRN
Trigger: GTTGCGCCTGCAAAGCCTGTTGCGCCTGCTGCACCTGTTACATCAGTTGTGCGTGCTGTACCTGCTGCACCTGTTACGCCAGTTGCGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 90 bp CTTCTGTTTTACTTCTGGCACAACTGGTGCAACTGGCACAGCTGGTaGAACTGGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAACTGG +
Preference number: 5 (lower is better)
Translates to: LLFYFWHNWCNWHSW*NWHSWRNGQSRCNW
Trigger: CCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTAAAACAGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp TTTTACTTCTGGCACAACTGGTGCAACTGGCACAGCTGGTGCAACTaGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAACTGGTGCAAC +
Preference number: 5 (lower is better)
Translates to: FYFWHNWCNWHSWCN*HSWRNGQSRCNWCN
Trigger: GTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp GATCTTCTGTTTTACTTCTGGCACAACTGGTGCAACTGGCACAGCTaGTGCAACTGGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAAC +
Preference number: 5 (lower is better)
Translates to: DLLFYFWHNWCNWHS*CNWHSWRNGQSRCN
Trigger: GTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTAAAACAGAAGATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp ATCTGTCACAGGGATCTTTGGGTCCTCCACAGACTTACTGTCTTTTaGCTCTGTAACATGCTTGGGCTCTGGAGCCTCCGGTTTCTTTGT +
Preference number: 5 (lower is better)
Translates to: ICHRDLWVLHRLTVF*LCNMLGLWSLRFLC
Trigger: ACAAAGAAACCGGAGGCTCCAGAGCCCAAGCATGTTACAGAGCCAAAAGACAGTAAGTCTGTGGAGGACCCAAAGATCCCTGTGACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp ATGTCACCGTCCTCTTGTCTTTCTCTATCGCTGGTTTCTTGGCTTTaGGGTCTGAGATCGTCACAGTCTTCTTTTCTTTTGGCTCCGTCT +
Preference number: 5 (lower is better)
Translates to: MSPSSCLSLSLVSWL*GLRSSQSSFLLAPS
Trigger: AGACGGAGCCAAAAGAAAAGAAGACTGTGACGATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGACGGTGACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 90 bp GGTGGTCACCGTTTTCTTCTCTTTCTGATCTGTCACAGGGATCTTTaGGTCCTCCACAGACTTACTGTCTTTTGGCTCTGTAACATGCTT +
Preference number: 5 (lower is better)
Translates to: GGHRFLLFLICHRDL*VLHRLTVFWLCNML
Trigger: AAGCATGTTACAGAGCCAAAAGACAGTAAGTCTGTGGAGGACCCAAAGATCCCTGTGACAGATCAGAAAGAGAAGAAAACGGTGACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp CACAGCTGGCGCAACGGGCAGAGCAGGTGCAACTGGTaGAACTGGCGCAACGGGCAGAGCAGGTGCGACTGG +
Preference number: 6 (lower is better)
Translates to: HSWRNGQSRCNW*NWRNGQSRCDW
Trigger: CCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp TGCAACTGGCACAGCTGGCGCAACGGGCAGAGCAGGTaGAACTGGTGCAACTGGCGCAACGGGCAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: CNWHSWRNGQSR*NWCNWRNGQSR
Trigger: CCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp TGGCGCAACGGGCAGAGCAGGTGCAACTGGTGCAACTaGCGCAACGGGCAGAGCAGGTGCGACTGGTGCAAC +
Preference number: 6 (lower is better)
Translates to: WRNGQSRCNWCN*RNGQSRCDWCN
Trigger: GTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCACCTGCTCTGCCCGTTGCGCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp TGCAACTGGCGCAACGGGCAGAGCAGGTGCGACTGGTaGAACTGGAGCAGCAGGCACAACTGGTGCAGCAGG +
Preference number: 6 (lower is better)
Translates to: CNWRNGQSRCDW*NWSSRHNWCSR
Trigger: CCTGCTGCACCAGTTGTGCCTGCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp TGCAACTGGTGCAACTGGCGCAACGGGCAGAGCAGGTaGGACTGGTGCAACTGGAGCAGCAGGCACAACTGG +
Preference number: 6 (lower is better)
Translates to: CNWCNWRNGQSR*DWCNWSSRHNW
Trigger: CCAGTTGTGCCTGCTGCTCCAGTTGCACCAGTCGCACCTGCTCTGCCCGTTGCGCCAGTTGCACCAGTTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp TGGCACAACTGGTGCAACTGGCACAGCTGGTGCAACTaGCACAGCTGGCGCAACGGGCAGAGCAGGTGCAAC +
Preference number: 6 (lower is better)
Translates to: WHNWCNWHSWCN*HSWRNGQSRCN
Trigger: GTTGCACCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 90 bp TTGCAGGCGCAACAGGCGCAACAGGCTTTGCAGGCGCAACAGGCTTaGCAGGTGCAGCATGCTCAGTATGCGCAACAGGCGGAGCATGCG +
Preference number: 6 (lower is better)
Translates to: LQAQQAQQALQAQQA*QVQHAQYAQQAEHA
Trigger: CGCATGCTCCGCCTGTTGCGCATACTGAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTGCGCCTGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp TACTTCTGGCACAACTGGTGCAACTGGCACAGCTGGTaGAACTGGCACAGCTGGCGCAACGGGCAGAGCAGG +
Preference number: 6 (lower is better)
Translates to: YFWHNWCNWHSW*NWHSWRNGQSR
Trigger: CCTGCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp AACAGGCTTTGCAGGCGCAACAGGCGCAACAGGCTTTaGAGGCGCAACAGGCTTTGCAGGTGCAGCATGCTC +
Preference number: 6 (lower is better)
Translates to: NRLCRRNRRNRL*RRNRLCRCSML
Trigger: GAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTGCGCCTGCAAAGCCTGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp AGGCACAACTGGCACAGCAGGTGCAACAGGCGCAACTaGCGTAACAGGTGCAGCAGGTACAGCACGCACAAC +
Preference number: 6 (lower is better)
Translates to: RHNWHSRCNRRN*RNRCSRYSTHN
Trigger: GTTGTGCGTGCTGTACCTGCTGCACCTGTTACGCCAGTTGCGCCTGTTGCACCTGCTGTGCCAGTTGTGCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp CAACAGGCGCAACAGGCTTTGCAGGCGCAACAGGCTTaGCAGGTGCAGCATGCTCAGTATGCGCAACAGGCG +
Preference number: 6 (lower is better)
Translates to: QQAQQALQAQQA*QVQHAQYAQQA
Trigger: CGCCTGTTGCGCATACTGAGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp CAACAGGCTTTGCAGGCGCAACAGGCGCAACAGGCTTaGCAGGCGCAACAGGCTTTGCAGGTGCAGCATGCT +
Preference number: 6 (lower is better)
Translates to: QQALQAQQAQQA*QAQQALQVQHA
Trigger: AGCATGCTGCACCTGCAAAGCCTGTTGCGCCTGCAAAGCCTGTTGCGCCTGTTGCGCCTGCAAAGCCTGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp TTTTACTTCTGGCACAACTGGTGCAACTGGCACAGCTaGTGCAACTGGCACAGCTGGCGCAACGGGCAGAGC +
Preference number: 6 (lower is better)
Translates to: FYFWHNWCNWHS*CNWHSWRNGQS
Trigger: GCTCTGCCCGTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTAAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp AGGGATCTTTGGGTCCTCCACAGACTTACTGTCTTTTaGCTCTGTAACATGCTTGGGCTCTGGAGCCTCCGG +
Preference number: 6 (lower is better)
Translates to: RDLWVLHRLTVF*LCNMLGLWSLR
Trigger: CCGGAGGCTCCAGAGCCCAAGCATGTTACAGAGCCAAAAGACAGTAAGTCTGTGGAGGACCCAAAGATCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp GATCTTCTGTTTTACTTCTGGCACAACTGGTGCAACTaGCACAGCTGGTGCAACTGGCACAGCTGGCGCAAC +
Preference number: 6 (lower is better)
Translates to: DLLFYFWHNWCN*HSWCNWHSWRN
Trigger: GTTGCGCCAGCTGTGCCAGTTGCACCAGCTGTGCCAGTTGCACCAGTTGTGCCAGAAGTAAAACAGAAGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 90 bp GGCTCTGTAACATGCTTGGGCTCTGGAGCCTCCGGTTTCTTTGTCTaGGCTGTGCTAGTGTTTTCCACAATCTTCGCCTTCTGGTTTGGG +
Preference number: 6 (lower is better)
Translates to: GSVTCLGSGASGFFV*AVLVFSTIFAFWFG
Trigger: CCCAAACCAGAAGGCGAAGATTGTGGAAAACACTAGCACAGCCAAGACAAAGAAACCGGAGGCTCCAGAGCCCAAGCATGTTACAGAGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 90 bp ATATCGGCAGGTTTGCTTTTGTTGAACTTGATGGTGAATAAGGCATaGGCACTGACTCGTGCCATGGGTCTCACAGCCGTGGGGGCACTC +
Preference number: 6 (lower is better)
Translates to: ISAGLLLLNLMVNKA*ALTRAMGLTAVGAL
Trigger: GAGTGCCCCCACGGCTGTGAGACCCATGGCACGAGTCAGTGCCAATGCCTTATTCACCATCAAGTTCAACAAAAGCAAACCTGCCGATAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp TCCTCCACAGACTTACTGTCTTTTGGCTCTGTAACATaGTTGGGCTCTGGAGCCTCCGGTTTCTTTGTCTTG +
Preference number: 6 (lower is better)
Translates to: SSTDLLSFGSVT*LGSGASGFFVL
Trigger: CAAGACAAAGAAACCGGAGGCTCCAGAGCCCAAGCATGTTACAGAGCCAAAAGACAGTAAGTCTGTGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp TCCACAGACTTACTGTCTTTTGGCTCTGTAACATGCTaGGGCTCTGGAGCCTCCGGTTTCTTTGTCTTGGCT +
Preference number: 6 (lower is better)
Translates to: STDLLSFGSVTC*GSGASGFFVLA
Trigger: AGCCAAGACAAAGAAACCGGAGGCTCCAGAGCCCAAGCATGTTACAGAGCCAAAAGACAGTAAGTCTGTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp GGTTTGCTTTTGTTGAACTTGATGGTGAATAAGGCATaGGCACTGACTCGTGCCATGGGTCTCACAGCCGTG +
Preference number: 6 (lower is better)
Translates to: GLLLLNLMVNKA*ALTRAMGLTAV
Trigger: CACGGCTGTGAGACCCATGGCACGAGTCAGTGCCAATGCCTTATTCACCATCAAGTTCAACAAAAGCAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp GTCACCGTCCTCTTGTCTTTCTCTATCGCTGGTTTCTaGGCTTTGGGGTCTGAGATCGTCACAGTCTTCTTT +
Preference number: 6 (lower is better)
Translates to: VTVLLSFSIAGF*ALGSEIVTVFF
Trigger: AAAGAAGACTGTGACGATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGACGGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp TCACCGTCCTCTTGTCTTTCTCTATCGCTGGTTTCTTaGCTTTGGGGTCTGAGATCGTCACAGTCTTCTTTT +
Preference number: 6 (lower is better)
Translates to: SPSSCLSLSLVS*LWGLRSSQSSF
Trigger: AAAAGAAGACTGTGACGATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGACGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp TCAACAGGCATATCGGCAGGTTTGCTTTTGTTGAACTaGATGGTGAATAAGGCATTGGCACTGACTCGTGCC +
Preference number: 6 (lower is better)
Translates to: STGISAGLLLLN*MVNKALALTRA
Trigger: GGCACGAGTCAGTGCCAATGCCTTATTCACCATCAAGTTCAACAAAAGCAAACCTGCCGATATGCCTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 90 bp ACAATCCTCTTGTCTTTTACTTCTGTCACAAATGTCACCGTCCTCTaGTCTTTCTCTATCGCTGGTTTCTTGGCTTTGGGGTCTGAGATC +
Preference number: 6 (lower is better)
Translates to: TILLSFTSVTNVTVL*SFSIAGFLALGSEI
Trigger: GATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGACGGTGACATTTGTGACAGAAGTAAAAGACAAGAGGATTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CCA 72 bp TCCTCTTGTCTTTCTCTATCGCTGGTTTCTTGGCTTTaGGGTCTGAGATCGTCACAGTCTTCTTTTCTTTTG +
Preference number: 6 (lower is better)
Translates to: SSCLSLSLVSWL*GLRSSQSSFLL
Trigger: CAAAAGAAAAGAAGACTGTGACGATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp GTCCTCTTGTCTTTCTCTATCGCTGGTTTCTTGGCTTaGGGGTCTGAGATCGTCACAGTCTTCTTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: VLLSFSIAGFLA*GSEIVTVFFSF
Trigger: AAAAGAAAAGAAGACTGTGACGATCTCAGACCCCAAAGCCAAGAAACCAGCGATAGAGAAAGACAAGAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS CAA 72 bp TTCTTTACTTTTATCTCTGGTGCGAATGACGATGCCTaGATTTCCTTTAACTCGGGCACACGTAGTGGCACT +
Preference number: 6 (lower is better)
Translates to: FFTFISGANDDA*ISFNSGTRSGT
Trigger: AGTGCCACTACGTGTGCCCGAGTTAAAGGAAATCAAGGCATCGTCATTCGCACCAGAGATAAAAGTAAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS GCA 72 bp CAAACAACTTTAAAGGGAATGGACTCCAACAAAATATaGTTGGTCTCAGTAATGTCCCGCAGCCACTGTTCT +
Preference number: 6 (lower is better)
Translates to: QTTLKGMDSNKI*LVSVMSRSHCS
Trigger: AGAACAGTGGCTGCGGGACATTACTGAGACCAAGCATATTTTGTTGGAGTCCATTCCCTTTAAAGTTGTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS TCA 72 bp TTTTACGTCTTTCACATGAGCCTTCTGCTTGATCTCTaGTCCAACCTTCTTTACTTTTATCTCTGGTGCGAA +
Preference number: 6 (lower is better)
Translates to: FYVFHMSLLLDL*SNLLYFYLWCE
Trigger: TTCGCACCAGAGATAAAAGTAAAGAAGGTTGGATCAGAGATCAAGCAGAAGGCTCATGTGAAAGACGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6
CDS TCA 72 bp TCTTCTCTTTTACGTCTTTCACATGAGCCTTCTGCTTaGTCTCTGATCCAACCTTCTTTACTTTTATCTCTG +
Preference number: 6 (lower is better)
Translates to: SSLLRLSHEPSA*SLIQPSLLLSL
Trigger: CAGAGATAAAAGTAAAGAAGGTTGGATCAGAGATCAAGCAGAAGGCTCATGTGAAAGACGTAAAAGAGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000046557.6