RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AKAIN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000091636

Ensembl transcript IDs: ENSMUST00000169935.2

Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACAGGAGCAGCAAGAAGTTATGGGGTTGCATGGAGATGGCTACGTTaGTACACATGCGCACACATCTCTCCAAACCCCTTCAGCCTGCAG +
Preference number: 1 (lower is better)
Translates to: TGAARSYGVAWRWLR*YTCAHISPNPFSLQ
Trigger: CTGCAGGCTGAAGGGGTTTGGAGAGATGTGTGCGCATGTGTATCAACGTAGCCATCTCCATGCAACCCCATAACTTCTTGCTGCTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 90 bp TGGGTTTGCTTCTCATTTTGGGCACATCTGGATAATTTCTCCAAGTaGCCTTATCCCGACTTGCCGCCCTGGCTACACTACTGTGTCACC +
Preference number: 1 (lower is better)
Translates to: WVCFSFWAHLDNFSK*PYPDLPPWLHYCVT
Trigger: GGTGACACAGTAGTGTAGCCAGGGCGGCAAGTCGGGATAAGGGCACTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 90 bp AGAGACATCTATTGTCCACACAGGAGCAGCAAGAAGTTATGGGGTTaGATGGAGATGGCTACGTTGATACACATGCGCACACATCTCTCC +
Preference number: 1 (lower is better)
Translates to: RDIYCPHRSSKKLWG*MEMATLIHMRTHLS
Trigger: GGAGAGATGTGTGCGCATGTGTATCAACGTAGCCATCTCCATGCAACCCCATAACTTCTTGCTGCTCCTGTGTGGACAATAGATGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 90 bp CAGAGACACAGTGGCAGGTCACCTGCAAACTACAAGCACTGGGTTTaGTTCTCATTTTGGGCACATCTGGATAATTTCTCCAAGTGCCCT +
Preference number: 1 (lower is better)
Translates to: QRHSGRSPANYKHWV*FSFWAHLDNFSKCP
Trigger: AGGGCACTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCAGTGCTTGTAGTTTGCAGGTGACCTGCCACTGTGTCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 90 bp TCTCAGCAGAGACACAGTGGCAGGTCACCTGCAAACTACAAGCACTaGGTTTGCTTCTCATTTTGGGCACATCTGGATAATTTCTCCAAG +
Preference number: 1 (lower is better)
Translates to: SQQRHSGRSPANYKH*VCFSFWAHLDNFSK
Trigger: CTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCAGTGCTTGTAGTTTGCAGGTGACCTGCCACTGTGTCTCTGCTGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR-3UTR CCA 90 bp GCACAGAGTATGGCTGTCCAAGATGGCTGCCAAAGAACTGCATCGTCAGCAGTTGGCAGAGACCAAGCATaGGACAAGAGCCAGAGCCAG +
Preference number: 2 (lower is better)
Translates to: AQSMAVQDGCQRTASSAVGRDQA*DKSQSQ
Trigger: CTGGCTCTGGCTCTTGTCCCATGCTTGGTCTCTGCC...AACTGCTGACGATGCAGTTCTTTGGCAGCCATCTTGGACAGCCATACTCTGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR-3UTR GCA 90 bp CCACTTCACTCTTCTCGTTCTGTTTACGCGCCTCAGAGAATTAAAAATAAAACAAGGGTCCAGACTCCCTaGCAAGGATGCTGCCCTCTC +
Preference number: 2 (lower is better)
Translates to: PLHSSRSVYAPQRIKNKTRVQTP*QGCCPL
Trigger: GAGAGGGCAGCATCCTTGGCAGGGAGTCTGGACCCT...TGTTTTATTTTTAATTCTCTGAGGCGCGTAAACAGAACGAGAAGAGTGAAGTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR-3UTR TCA 90 bp ACACTACTGTGTCACCATATGATCTTAGGTTCATTGTTTAATTGCCATGAGCTCAAATGCAGGGCTGGGTaGTGGAGCAGTGATCATAGG +
Preference number: 2 (lower is better)
Translates to: TLLCHHMILGSLFNCHELKCRAG*WSSDHR
Trigger: CCTATGATCACTGCTCCATCACCCAGCCCTGCATTT...GAGCTCATGGCAATTAAACAATGAACCTAAGATCATATGGTGACACAGTAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp ACACATGCGCACACATCTCTCCAAACCCCTTCAGCCTaGAGCCACTTCACTCTTCTCGTTCTGTTTACGCGC +
Preference number: 3 (lower is better)
Translates to: THAHTSLQTPSA*SHFTLLVLFTR
Trigger: GCGCGTAAACAGAACGAGAAGAGTGAAGTGGCTGCAGGCTGAAGGGGTTTGGAGAGATGTGTGCGCATGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp GTAGACCAGAGGTTTCTAACCAAGGCTAAATTCTTCTaGTATCCCAAGGAGCACCAGCCCAGTGGCCTCTGC +
Preference number: 3 (lower is better)
Translates to: VDQRFLTKAKFF*YPKEHQPSGLC
Trigger: GCAGAGGCCACTGGGCTGGTGCTCCTTGGGATAGCAGAAGAATTTAGCCTTGGTTAGAAACCTCTGGTCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 72 bp GAGCAGCGTGGGGACTCAGAGTATATGCACAGAGTATaGCTGTCCAAGATGGCTGCCAAAGAACTGCATCGT +
Preference number: 3 (lower is better)
Translates to: EQRGDSEYMHRV*LSKMAAKELHR
Trigger: ACGATGCAGTTCTTTGGCAGCCATCTTGGACAGCCATACTCTGTGCATATACTCTGAGTCCCCACGCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR TCA 72 bp GCAAGAAGTTATGGGGTTGCATGGAGATGGCTACGTTaGTACACATGCGCACACATCTCTCCAAACCCCTTC +
Preference number: 3 (lower is better)
Translates to: ARSYGVAWRWLR*YTCAHISPNPF
Trigger: GAAGGGGTTTGGAGAGATGTGTGCGCATGTGTATCAACGTAGCCATCTCCATGCAACCCCATAACTTCTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp TTCTCATTTTGGGCACATCTGGATAATTTCTCCAAGTaGCCTTATCCCGACTTGCCGCCCTGGCTACACTAC +
Preference number: 3 (lower is better)
Translates to: FSFWAHLDNFSK*PYPDLPPWLHY
Trigger: GTAGTGTAGCCAGGGCGGCAAGTCGGGATAAGGGCACTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp ACAGAGTATGGCTGTCCAAGATGGCTGCCAAAGAACTaGATCGTCAGCAGTTCTGCATACAGACTCAGTCAT +
Preference number: 3 (lower is better)
Translates to: TEYGCPRWLPKN*IVSSSAYRLSH
Trigger: ATGACTGAGTCTGTATGCAGAACTGCTGACGATGCAGTTCTTTGGCAGCCATCTTGGACAGCCATACTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp TATTGTCCACACAGGAGCAGCAAGAAGTTATGGGGTTaGATGGAGATGGCTACGTTGATACACATGCGCACA +
Preference number: 3 (lower is better)
Translates to: YCPHRSSKKLWG*MEMATLIHMRT
Trigger: TGTGCGCATGTGTATCAACGTAGCCATCTCCATGCAACCCCATAACTTCTTGCTGCTCCTGTGTGGACAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp ATCTGGATAATTTCTCCAAGTGCCCTTATCCCGACTTaGCGCCCTGGCTACACTACTGTGTCACCATATGAT +
Preference number: 3 (lower is better)
Translates to: IWIISPSALIPT*RPGYTTVSPYD
Trigger: ATCATATGGTGACACAGTAGTGTAGCCAGGGCGGCAAGTCGGGATAAGGGCACTTGGAGAAATTATCCAGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp ACAGATGTCTCAGCAGAGACACAGTGGCAGGTCACCTaGAAACTACAAGCACTGGGTTTGCTTCTCATTTTG +
Preference number: 3 (lower is better)
Translates to: TDVSAETQWQVT*KLQALGLLLIL
Trigger: CAAAATGAGAAGCAAACCCAGTGCTTGTAGTTTGCAGGTGACCTGCCACTGTGTCTCTGCTGAGACATCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 72 bp ACTCAGAGTATATGCACAGAGTATGGCTGTCCAAGATaGCTGCCAAAGAACTGCATCGTCAGCAGTTCTGCA +
Preference number: 3 (lower is better)
Translates to: TQSICTEYGCPR*LPKNCIVSSSA
Trigger: TGCAGAACTGCTGACGATGCAGTTCTTTGGCAGCCATCTTGGACAGCCATACTCTGTGCATATACTCTGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp GTATTACAAAGACATGAAGAGCCCCTAACGCAGCTTTaGAAACCACAGCTTGTCGTAAAGGCTAGCGTGAAC +
Preference number: 3 (lower is better)
Translates to: VLQRHEEPLTQL*KPQLVVKASVN
Trigger: GTTCACGCTAGCCTTTACGACAAGCTGTGGTTTGCAAAGCTGCGTTAGGGGCTCTTCATGTCTTTGTAATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp AAGATGGCTGCCAAAGAACTGCATCGTCAGCAGTTCTaGATACAGACTCAGTCATCTCATTTAACCCACAGC +
Preference number: 3 (lower is better)
Translates to: KMAAKELHRQQF*IQTQSSHLTHS
Trigger: GCTGTGGGTTAAATGAGATGACTGAGTCTGTATGCAGAACTGCTGACGATGCAGTTCTTTGGCAGCCATCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp AGAGTATATGCACAGAGTATGGCTGTCCAAGATGGCTaGCAAAGAACTGCATCGTCAGCAGTTCTGCATACA +
Preference number: 3 (lower is better)
Translates to: RVYAQSMAVQDG*QRTASSAVLHT
Trigger: TGTATGCAGAACTGCTGACGATGCAGTTCTTTGGCAGCCATCTTGGACAGCCATACTCTGTGCATATACTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR GCA 72 bp AGTGGCAGGTCACCTGCAAACTACAAGCACTGGGTTTaGTTCTCATTTTGGGCACATCTGGATAATTTCTCC +
Preference number: 3 (lower is better)
Translates to: SGRSPANYKHWV*FSFWAHLDNFS
Trigger: GGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCAGTGCTTGTAGTTTGCAGGTGACCTGCCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 72 bp CTCACACAGCATAAACGCGTCTCCCTCTCTTTTTCTTaGAGTGTTATAAACATAGGCTGTAGTGCAGGGCTG +
Preference number: 3 (lower is better)
Translates to: LTQHKRVSLSFS*SVINIGCSAGL
Trigger: CAGCCCTGCACTACAGCCTATGTTTATAACACTCCAAGAAAAAGAGAGGGAGACGCGTTTATGCTGTGTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 72 bp ACAAGCACTGGGTTTGCTTCTCATTTTGGGCACATCTaGATAATTTCTCCAAGTGCCCTTATCCCGACTTGC +
Preference number: 3 (lower is better)
Translates to: TSTGFASHFGHI*IISPSALIPTC
Trigger: GCAAGTCGGGATAAGGGCACTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCAGTGCTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR CCA 72 bp CCTGCAAACTACAAGCACTGGGTTTGCTTCTCATTTTaGGCACATCTGGATAATTTCTCCAAGTGCCCTTAT +
Preference number: 3 (lower is better)
Translates to: PANYKHWVCFSF*AHLDNFSKCPY
Trigger: ATAAGGGCACTTGGAGAAATTATCCAGATGTGCCCAAAATGAGAAGCAAACCCAGTGCTTGTAGTTTGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR-3UTR CAA 90 bp ACTCTAAAGGATGTCTTCAGAGAGACATCTATTGTCCACACAGGAGCAGCAAGACTCCCTCTCTTTTTCTaGGAGTGTTATAAACATAGG +
Preference number: 3 (lower is better)
Translates to: TLKDVFRETSIVHTGAARLPLFF*ECYKHR
Trigger: CCTATGTTTATAACACTCCAAGAAAAAGAGAGGGAG...TCTTGCTGCTCCTGTGTGGACAATAGATGTCTCTCTGAAGACATCCTTTAGAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR-3UTR CAA 90 bp ACTCTAAAGGATGTCTTCAGAGAGACATCTATTGTCCACACAGGAGCAGCAAGAACATGCCTGTTCAATTaGACCTTGAACCTATACTTA +
Preference number: 3 (lower is better)
Translates to: TLKDVFRETSIVHTGAARTCLFN*TLNLYL
Trigger: TAAGTATAGGTTCAAGGTCAAATTGAACAGGCATGT...TCTTGCTGCTCCTGTGTGGACAATAGATGTCTCTCTGAAGACATCCTTTAGAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
3UTR TCA 72 bp ACACATAGCATAGAATATTGGAATTCTGGAGGTGTCTaGACACCAGCCACATTTTGTGTGCTAGCAATACTT +
Preference number: 3 (lower is better)
Translates to: THSIEYWNSGGV*TPATFCVLAIL
Trigger: AAGTATTGCTAGCACACAAAATGTGGCTGGTGTTCAGACACCTCCAGAATTCCAATATTCTATGCTATGTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CCA 90 bp TGGGCACATCTGGATAATTTCTCCAAGTGCCCTTATCCCGACTTGCCGCCCTGGGGACAATCTGCTTGCTaGTGTTCTGCAGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: WAHLDNFSKCPYPDLPPWGQSAC*CSAASP
Trigger: AGGTGAAGCTGCAGAACACCAGCAAGCAGATTGTCC...CCAGGGCGGCAAGTCGGGATAAGGGCACTTGGAGAAATTATCCAGATGTGCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR GCA 90 bp TCCAAGATGGCTGCCAAAGAACTGCATCGTCAGCAGTTCTGCATACAGACTCAGTGCTTGCTGGTGTTCTaGAGCTTCACCTCCTCTAGC +
Preference number: 4 (lower is better)
Translates to: SKMAAKELHRQQFCIQTQCLLVF*SFTSSS
Trigger: GCTAGAGGAGGTGAAGCTGCAGAACACCAGCAAGCA...CTGAGTCTGTATGCAGAACTGCTGACGATGCAGTTCTTTGGCAGCCATCTTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CCA 90 bp ACTCTAAAGGATGTCTTCAGAGAGACATCTATTGTCCACACAGGAGCAGCAAGAGGGAGACTTGCCGCATaGCTTGCAGGATGGCATTCT +
Preference number: 4 (lower is better)
Translates to: TLKDVFRETSIVHTGAARGRLAA*LAGWHS
Trigger: AGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCC...TCTTGCTGCTCCTGTGTGGACAATAGATGTCTCTCTGAAGACATCCTTTAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CCA 90 bp GTAGTGCAGGGCTGGGCTCAGAACATGCCTGTTCAATTTGACCTTGAACCTATATCTTTTCATGTTTCTTaGTCAGCTCGCACCCTCCCA +
Preference number: 4 (lower is better)
Translates to: VVQGWAQNMPVQFDLEPISFHVS*SARTLP
Trigger: TGGGAGGGTGCGAGCTGACCAAGAAACATGAAAAGA...TATAGGTTCAAGGTCAAATTGAACAGGCATGTTCTGAGCCCAGCCCTGCACTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR GCA 90 bp ACACTACTGTGTCACCATATGATCTTAGGTTCATTGTTTAATTGCCATGAGCTCCTCTCCTGGGAGACTTaGCGCATGGCTTGCAGGATG +
Preference number: 4 (lower is better)
Translates to: TLLCHHMILGSLFNCHELLSWET*RMACRM
Trigger: CATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAG...GAGCTCATGGCAATTAAACAATGAACCTAAGATCATATGGTGACACAGTAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR GCA 90 bp ACTCTAAAGGATGTCTTCAGAGAGACATCTATTGTCCACACAGGAGCAGCAAGATCTGGACAATCTGCTTaGTGGTGTTCTGCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: TLKDVFRETSIVHTGAARSGQSA*WCSAAS
Trigger: TGAAGCTGCAGAACACCAGCAAGCAGATTGTCCAGA...TCTTGCTGCTCCTGTGTGGACAATAGATGTCTCTCTGAAGACATCCTTTAGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS CCA 90 bp CAGGCCCTGCTGTCACCGGGTCTGCCTTCCCTCCGCAGGCTCTCCTaGGAGACTTGCCGCATGGCTTGCAGGATGGCATTCTGGACAATC +
Preference number: 5 (lower is better)
Translates to: QALLSPGLPSLRRLS*ETCRMACRMAFWTI
Trigger: GATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCCTGCGGAGGGAAGGCAGACCCGGTGACAGCAGGGCCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS GCA 90 bp CTGCCTTCCCTCCGCAGGCTCTCCTGGGAGACTTGCCGCATGGCTTaGAGGATGGCATTCTGGACAATCTGCTTGCTGGTGTTCTGCAGC +
Preference number: 5 (lower is better)
Translates to: LPSLRRLSWETCRMA*RMAFWTICLLVFCS
Trigger: GCTGCAGAACACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCCTGCGGAGGGAAGGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CAA 90 bp GGAGCAGCGTGGGGACTCAGAGTATATGCACAGAGTATGGCTGTCCAAGATGGCGACTTGCCGCATGGCTaGCAGGATGGCATTCTGGAC +
Preference number: 5 (lower is better)
Translates to: GAAWGLRVYAQSMAVQDGDLPHG*QDGILD
Trigger: GTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTC...GCCATCTTGGACAGCCATACTCTGTGCATATACTCTGAGTCCCCACGCTGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS GCA 90 bp AGACTTGCCGCATGGCTTGCAGGATGGCATTCTGGACAATCTGCTTaGTGGTGTTCTGCAGCTTCACCTCCTCTAGCTCCTTCCCAGACT +
Preference number: 5 (lower is better)
Translates to: RLAAWLAGWHSGQSA*WCSAASPPLAPSQT
Trigger: AGTCTGGGAAGGAGCTAGAGGAGGTGAAGCTGCAGAACACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CAA 90 bp GATGTCTTCAGAGAGACATCTATTGTCCACACAGGAGCAGCAAGAAGTTATGGGGCTCTCCTGGGAGACTaGCCGCATGGCTTGCAGGAT +
Preference number: 5 (lower is better)
Translates to: DVFRETSIVHTGAARSYGALLGD*PHGLQD
Trigger: ATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGC...CCCATAACTTCTTGCTGCTCCTGTGTGGACAATAGATGTCTCTCTGAAGACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CAA 90 bp GATCTCCGCACTGAAGGTAAACACCAACCGCAAACAATTCAGAGAACAGAGATTTTCTTTTCATGTTTCTaGGTCAGCTCGCACCCTCCC +
Preference number: 5 (lower is better)
Translates to: DLRTEGKHQPQTIQRTEIFFSCF*VSSHPP
Trigger: GGGAGGGTGCGAGCTGACCAAGAAACATGAAAAGAA...AATCTCTGTTCTCTGAATTGTTTGCGGTTGGTGTTTACCTTCAGTGCGGAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS-3UTR CAA 90 bp CCACTTCACTCTTCTCGTTCTGTTTACGCGCCTCAGAGAATTAAAAATAAAACATTCTGGACAATCTGCTaGCTGGTGTTCTGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: PLHSSRSVYAPQRIKNKTFWTIC*LVFCSF
Trigger: GAAGCTGCAGAACACCAGCAAGCAGATTGTCCAGAA...TGTTTTATTTTTAATTCTCTGAGGCGCGTAAACAGAACGAGAAGAGTGAAGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS GCA 72 bp CTCCGCAGGCTCTCCTGGGAGACTTGCCGCATGGCTTaGAGGATGGCATTCTGGACAATCTGCTTGCTGGTG +
Preference number: 6 (lower is better)
Translates to: LRRLSWETCRMA*RMAFWTICLLV
Trigger: CACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCCTGCGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS CCA 72 bp CTTCCCTCCGCAGGCTCTCCTGGGAGACTTGCCGCATaGCTTGCAGGATGGCATTCTGGACAATCTGCTTGC +
Preference number: 6 (lower is better)
Translates to: LPSAGSPGRLAA*LAGWHSGQSAC
Trigger: GCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCCTGCGGAGGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS CAA 90 bp TCTGCCTTCCCTCCGCAGGCTCTCCTGGGAGACTTGCCGCATGGCTaGCAGGATGGCATTCTGGACAATCTGCTTGCTGGTGTTCTGCAG +
Preference number: 6 (lower is better)
Translates to: SAFPPQALLGDLPHG*QDGILDNLLAGVLQ
Trigger: CTGCAGAACACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCCTGCGGAGGGAAGGCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS CCA 72 bp GGCTCTCCTGGGAGACTTGCCGCATGGCTTGCAGGATaGCATTCTGGACAATCTGCTTGCTGGTGTTCTGCA +
Preference number: 6 (lower is better)
Translates to: GSPGRLAAWLAG*HSGQSACWCSA
Trigger: TGCAGAACACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGCGGCAAGTCTCCCAGGAGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2
CDS GCA 72 bp GCATGGCTTGCAGGATGGCATTCTGGACAATCTGCTTaGTGGTGTTCTGCAGCTTCACCTCCTCTAGCTCCT +
Preference number: 6 (lower is better)
Translates to: AWLAGWHSGQSA*WCSAASPPLAP
Trigger: AGGAGCTAGAGGAGGTGAAGCTGCAGAACACCAGCAAGCAGATTGTCCAGAATGCCATCCTGCAAGCCATGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169935.2