Pregenerated sensors for AK6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078941

Ensembl transcript IDs: ENSMUST00000022135.15, ENSMUST00000190729.2

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	TTAACTTGTAGTACAATGGATCCAAGTCCAAGAACACAGGTTACATaGATCGTGGCTAGACTACATATTATCATAGTCATCATCATCATC	+
Preference number: 1 (lower is better) Translates to: LTCSTMDPSPRTQVT*IVARLHIIIVIIII Trigger: GATGATGATGATGACTATGATAATATGTAGTCTAGCCACGATGCATGTAACCTGTGTTCTTGGACTTGGATCCATTGTACTACAAGTTAA 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190729.2
3UTR-3UTR GCA 90 bp	AACAGAGCCTTACTGTGCAGCCCTGGCTGGCCTAGAACTCACTGTGTAGACCAGGATGGACGGAGGTGGTaGCTGGCTAGCCAGTGTCTA	+
Preference number: 2 (lower is better) Translates to: NRALLCSPGWPRTHCVDQDGRRW*LASQCL Trigger: TAGACACTGGCTAGCCAGGCACCACCTCCGTCCATC...CTGGTCTACACAGTGAGTTCTAGGCCAGCCAGGGCTGCACAGTAAGGCTCTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022135.15
3UTR CCA 72 bp	ACTCACTGTGTAGACCAGCTGCTGCCTCCTAAGATCTaGGACGATGGACGGAGGTGGTGCCTGGCTAGCCAG	+
Preference number: 3 (lower is better) Translates to: THCVDQLLPPKI*DDGRRWCLASQ Trigger: CTGGCTAGCCAGGCACCACCTCCGTCCATCGTCCCAGATCTTAGGAGGCAGCAGCTGGTCTACACAGTGAGT 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022135.15
3UTR GCA 72 bp	CAGGCAGCAGCTAGAGCTGCGACACAAGCTTTCTTCTaGTCATCCTCCCGTGTTCCTACTATGTGGACTGAG	+
Preference number: 3 (lower is better) Translates to: QAAARAATQAFF*SSSRVPTMWTE Trigger: CTCAGTCCACATAGTAGGAACACGGGAGGATGAGCAGAAGAAAGCTTGTGTCGCAGCTCTAGCTGCTGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022135.15
3UTR GCA 72 bp	AGTACAATGGATCCAAGTCCAAGAACACAGGTTACATaGATCGTGGCTAGACTACATATTATCATAGTCATC	+
Preference number: 3 (lower is better) Translates to: STMDPSPRTQVT*IVARLHIIIVI Trigger: GATGACTATGATAATATGTAGTCTAGCCACGATGCATGTAACCTGTGTTCTTGGACTTGGATCCATTGTACT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000190729.2
CDS-3UTR CCA 90 bp	GCAGCAGCTAGAGCTGCGACACAAGCTTTCTTCTGCTCATCCTCCCGTGTTCCTATCCATTTTGAGATTTaGTTGATATTGTCCTCGAGC	+
Preference number: 4 (lower is better) Translates to: AAARAATQAFFCSSSRVPIHFEI*LILSSS Trigger: GCTCGAGGACAATATCAACCAAATCTCAAAATGGAT...AGGAACACGGGAGGATGAGCAGAAGAAAGCTTGTGTCGCAGCTCTAGCTGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022135.15
CDS-3UTR CAA 90 bp	GCTGCGACACAAGCTTTCTTCTGCTCATCCTCCCGTGTTCCTACTATGTGGACTCATTTTGAGATTTGGTaGATATTGTCCTCGAGCTGT	+
Preference number: 5 (lower is better) Translates to: AATQAFFCSSSRVPTMWTHFEIW*ILSSSC Trigger: ACAGCTCGAGGACAATATCAACCAAATCTCAAAATG...AGTCCACATAGTAGGAACACGGGAGGATGAGCAGAAGAAAGCTTGTGTCGCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022135.15

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