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Pregenerated sensors for AK5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039058

Ensembl transcript IDs: ENSMUST00000045262.11, ENSMUST00000200062.2

Found 187 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTaGCACAGGCACAACACAGGCGCTGCCGGACACCGTGTTCTAGGC +
Preference number: 1 (lower is better)
Translates to: THASRWDAFTHGAGP*HRHNTGAAGHRVLG
Trigger: GCCTAGAACACGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 90 bp CTGCAGCCGGCCCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTaGTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGGACAATTGCC +
Preference number: 1 (lower is better)
Translates to: LQPALRQGWNRQIPH*SFHPKTSARVGTIA
Trigger: GGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGCCGGCTGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR TCA 90 bp AGGGATATGCTGTCCCTGTGTGGTGGATCAGACTGCAGCCGGCCCTaGGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATC +
Preference number: 1 (lower is better)
Translates to: RDMLSLCGGSDCSRP*GRAGTGRSHTALFI
Trigger: GATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGCCGGCTGCAGTCTGATCCACCACACAGGGACAGCATATCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 90 bp GTCCCTGTGTGGTGGATCAGACTGCAGCCGGCCCTGAGGCAGGGCTaGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACGAGT +
Preference number: 1 (lower is better)
Translates to: VPVWWIRLQPALRQG*NRQIPHCSFHPKTS
Trigger: ACTCGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGCCGGCTGCAGTCTGATCCACCACACAGGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR TCA 90 bp CGGGCCCTCTCATGGATGGGAACTGAGGAAGCAGCCAGTACCAGATaGGGTGTCCAAGCCTGTCCCCATGCTAACAACCCACATCAGGGA +
Preference number: 1 (lower is better)
Translates to: RALSWMGTEEAASTR*GVQACPHANNPHQG
Trigger: TCCCTGATGTGGGTTGTTAGCATGGGGACAGGCTTGGACACCTCATCTGGTACTGGCTGCTTCCTCAGTTCCCATCCATGAGAGGGCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR TCA 90 bp CGCTGCCGGACACCGTGTTCTAGGCGTGCCCTCCCTGGCATCGGTTaGGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGT +
Preference number: 1 (lower is better)
Translates to: RCRTPCSRRALPGIG*EIVPSFLFGSMSGS
Trigger: ACTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGGCACGCCTAGAACACGGTGTCCGGCAGCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 90 bp CGAAGTGTACCATGCATGATTTCCAGAACCTCTCAGGAGATGAGCTaGGAAGGACACAGCCAGCGAGAATGGGTGGGGATGGGGACAAAG +
Preference number: 1 (lower is better)
Translates to: RSVPCMISRTSQEMS*EGHSQREWVGMGTK
Trigger: CTTTGTCCCCATCCCCACCCATTCTCGCTGGCTGTGTCCTTCCCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCATGGTACACTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 90 bp CTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACGAGTaGCAGAGTGGGGACAATTGCCAGCACGAGAGAAAGGTGGACAGT +
Preference number: 1 (lower is better)
Translates to: LEQADPTLLFSSKDE*QSGDNCQHERKVDS
Trigger: ACTGTCCACCTTTCTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 90 bp AAGACGAGTGCCAGAGTGGGGACAATTGCCAGCACGAGAGAAAGGTaGACAGTCCGAAGTGTACCATGCATGATTTCCAGAACCTCTCAG +
Preference number: 1 (lower is better)
Translates to: KTSARVGTIASTRER*TVRSVPCMISRTSQ
Trigger: CTGAGAGGTTCTGGAAATCATGCATGGTACACTTCGGACTGTCCACCTTTCTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 90 bp ACAATTGCCAGCACGAGAGAAAGGTGGACAGTCCGAAGTGTACCATaGATGATTTCCAGAACCTCTCAGGAGATGAGCTGGGAAGGACAC +
Preference number: 1 (lower is better)
Translates to: TIASTRERWTVRSVP*MISRTSQEMSWEGH
Trigger: GTGTCCTTCCCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCATGGTACACTTCGGACTGTCCACCTTTCTCTCGTGCTGGCAATTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 90 bp GAGGAAAGAGTCATGCAAACCAAACTGAATGTGGTGGTGACCGAGTaGAAGATGCAGGGGTTTCAGAAGACACAAGCAACTCTGCACAAA +
Preference number: 1 (lower is better)
Translates to: EERVMQTKLNVVVTE*KMQGFQKTQATLHK
Trigger: TTTGTGCAGAGTTGCTTGTGTCTTCTGAAACCCCTGCATCTTGCACTCGGTCACCACCACATTCAGTTTGGTTTGCATGACTCTTTCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 90 bp CTGATCAATGCCATTTTGAAATATTTCTGTCAGGTTCCACTGGCTTaGTACCTTGTATCCCATAGGACATTTAAAAGGCCCACTAGGGCT +
Preference number: 1 (lower is better)
Translates to: LINAILKYFCQVPLA*YLVSHRTFKRPTRA
Trigger: AGCCCTAGTGGGCCTTTTAAATGTCCTATGGGATACAAGGTACCAAGCCAGTGGAACCTGACAGAAATATTTCAAAATGGCATTGATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 90 bp CCAGTGAGTGAAGTAACATCATCTCTCATTCTTTTAAATGATCTCTaGTCTCTGGTACTAAAGTACATAATTGCTGAGCCGAACTGCCAT +
Preference number: 1 (lower is better)
Translates to: PVSEVTSSLILLNDL*SLVLKYIIAEPNCH
Trigger: ATGGCAGTTCGGCTCAGCAATTATGTACTTTAGTACCAGAGACCAGAGATCATTTAAAAGAATGAGAGATGATGTTACTTCACTCACTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 90 bp AATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTaGTCACTCATTGAGGAAAGAGTCATGCAAACCAAACTGAATGTG +
Preference number: 1 (lower is better)
Translates to: NDFKNTVVSWNHTSV*SLIEERVMQTKLNV
Trigger: CACATTCAGTTTGGTTTGCATGACTCTTTCCTCAATGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTTAAAATCATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp GGTGGTGACCGAGTGCAAGATGCAGGGGTTTCAGAAGACACAAGCAACTCTGCAGCCCTGAGGCAGGGCTaGAACAGGCAGATCCCACAC +
Preference number: 2 (lower is better)
Translates to: GGDRVQDAGVSEDTSNSAALRQG*NRQIPH
Trigger: GTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGC...TGCAGAGTTGCTTGTGTCTTCTGAAACCCCTGCATCTTGCACTCGGTCACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp AGAGTCATGCAAACCAAACTGAATGTGGTGGTGACCGAGTGCAAGATGCAGGGGCACGGAGCAGGCCCTTaGCACAGGCACAACACAGGC +
Preference number: 2 (lower is better)
Translates to: RVMQTKLNVVVTECKMQGHGAGP*HRHNTG
Trigger: GCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTG...CCCCTGCATCTTGCACTCGGTCACCACCACATTCAGTTTGGTTTGCATGACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp TCACGGAGCAGGCCCTTGACACAGGCACAACACAGGCGCTGCCGGACACCGTGTGTTTTGTCCAGTGAGTaGAGTAACATCATCTCTCAT +
Preference number: 2 (lower is better)
Translates to: SRSRPLTQAQHRRCRTPCVLSSE*SNIISH
Trigger: ATGAGAGATGATGTTACTTCACTCACTGGACAAAAC...ACACGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp TGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGGCTGTCCCTGTGTGGTaGATCAGACTGCAGCCGGCC +
Preference number: 2 (lower is better)
Translates to: WHRLRDCSFLFIWQYVREAVPVW*IRLQPA
Trigger: GGCCGGCTGCAGTCTGATCCACCACACAGGGACAGC...CTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp CCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCGAACCTCTCAGGAGATaGGCTGGGAAGGACACAGCC +
Preference number: 2 (lower is better)
Translates to: PPWHRLRDCSFLFIWQYVEPLRR*AGKDTA
Trigger: GGCTGTGTCCTTCCCAGCTCATCTCCTGAGAGGTTC...GACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CAA 90 bp GGACACCGTGTTCTAGGCGTGCCCTCCCTGGCATCGGTTGAGAGATaGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTAATTGTC +
Preference number: 2 (lower is better)
Translates to: GHRVLGVPSLASVER*FLPFYLAVCQGVIV
Trigger: GACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGGCACGCCTAGAACACGGTGTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp TGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGGGGCCCTCTCATGGATaGGAACTGAGGAAGCAGCCA +
Preference number: 2 (lower is better)
Translates to: WHRLRDCSFLFIWQYVREGPSHG*ELRKQP
Trigger: TGGCTGCTTCCTCAGTTCCCATCCATGAGAGGGCCC...CTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp GGTGGTGACCGAGTGCAAGATGCAGGGGTTTCAGAAGACACAAGCAACTCTGCATCTCATTCTTTTAAATaGTCTCTGGTCTCTGGTACT +
Preference number: 2 (lower is better)
Translates to: GGDRVQDAGVSEDTSNSASHSFK*SLVSGT
Trigger: AGTACCAGAGACCAGAGATCATTTAAAAGAATGAGA...TGCAGAGTTGCTTGTGTCTTCTGAAACCCCTGCATCTTGCACTCGGTCACCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp TTGAAATATTTCTGTCAGGTTCCACTGGCTTGGTACCTTGTATCCCATAGGACAGAGAATGGGTGGGGATaGGGACAAAGCGAAAGGTGT +
Preference number: 2 (lower is better)
Translates to: LKYFCQVPLAWYLVSHRTENGWG*GQSERC
Trigger: ACACCTTTCGCTTTGTCCCCATCCCCACCCATTCTC...TGTCCTATGGGATACAAGGTACCAAGCCAGTGGAACCTGACAGAAATATTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp CCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTAGAAGGAGGAAGCTGTaGTGGAGAAATAGGGATATG +
Preference number: 2 (lower is better)
Translates to: PSLASVERLFLPFYLAVCRRRKL*WRNRDM
Trigger: CATATCCCTATTTCTCCATCACAGCTTCCTCCTTCT...ACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR TCA 90 bp CCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCGAACAAATAAGCCCATaGGAAGGAGGAAGCTGTGAT +
Preference number: 2 (lower is better)
Translates to: PPWHRLRDCSFLFIWQYVEQISP*EGGSCD
Trigger: ATCACAGCTTCCTCCTTCTCATGGGCTTATTTGTTC...GACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR GCA 90 bp CCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGTGGGGAGAAATAGGGATATaGTGTCCCTGTGTGGTGGAT +
Preference number: 2 (lower is better)
Translates to: PELLASMTLFKIASVPEWGEIGI*CPCVVD
Trigger: ATCCACCACACAGGGACAGCATATCCCTATTTCTCC...CCACTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp CCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTAATTGTCTCAGATCAAAACTACACAGCCAGCGAGAATaGGTGGGGATGGGGACAAAG +
Preference number: 2 (lower is better)
Translates to: PSFLFGSMSGSNCLRSKLHSQRE*VGMGTK
Trigger: CTTTGTCCCCATCCCCACCCATTCTCGCTGGCTGTG...TAGTTTTGATCTGAGACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CAA 90 bp GTGCCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTaGGCAGTATGTCAGGGAGTAATTGTCTCAGATCAAAACTACAAG +
Preference number: 2 (lower is better)
Translates to: VPSLASVERLFLPFY*AVCQGVIVSDQNYK
Trigger: CTTGTAGTTTTGATCTGAGACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGGCAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CCA 90 bp CCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTATCAAAACTACAAGTTaGTTTTGTCCAGTGAGTGAA +
Preference number: 2 (lower is better)
Translates to: PSLASVERLFLPFYLAVCIKTTS*FCPVSE
Trigger: TTCACTCACTGGACAAAACCAACTTGTAGTTTTGAT...ACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp CGGAGCAGGCCCTTGACACAGGCACAACACAGGCGCTaGCGGACACCGTGTTCTAGGCGTGCCCTCCCTGGC +
Preference number: 3 (lower is better)
Translates to: RSRPLTQAQHRR*RTPCSRRALPG
Trigger: GCCAGGGAGGGCACGCCTAGAACACGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR TCA 72 bp CTGTCCCTGTGTGGTGGATCAGACTGCAGCCGGCCCTaGGGCAGGGCTGGAACAGGCAGATCCCACACTGCT +
Preference number: 3 (lower is better)
Translates to: LSLCGGSDCSRP*GRAGTGRSHTA
Trigger: AGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGCCGGCTGCAGTCTGATCCACCACACAGGGACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR TCA 72 bp TCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTaGCACAGGCACAACACAGGCGCTGCCGGACACCGT +
Preference number: 3 (lower is better)
Translates to: SRWDAFTHGAGP*HRHNTGAAGHR
Trigger: ACGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp GCCCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTaGTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGG +
Preference number: 3 (lower is better)
Translates to: ALRQGWNRQIPH*SFHPKTSARVG
Trigger: CCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 72 bp TGGTGGATCAGACTGCAGCCGGCCCTGAGGCAGGGCTaGAACAGGCAGATCCCACACTGCTCTTTTCATCCA +
Preference number: 3 (lower is better)
Translates to: WWIRLQPALRQG*NRQIPHCSFHP
Trigger: TGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGGGCCGGCTGCAGTCTGATCCACCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp CAACTCTGCACAAAACACCCACGCTTCACGCTGGGATaGATTTACTCACGGAGCAGGCCCTTGACACAGGCA +
Preference number: 3 (lower is better)
Translates to: QLCTKHPRFTLG*IYSRSRPLTQA
Trigger: TGCCTGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGTTTTGTGCAGAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 72 bp CCATGCATGATTTCCAGAACCTCTCAGGAGATGAGCTaGGAAGGACACAGCCAGCGAGAATGGGTGGGGATG +
Preference number: 3 (lower is better)
Translates to: PCMISRTSQEMS*EGHSQREWVGM
Trigger: CATCCCCACCCATTCTCGCTGGCTGTGTCCTTCCCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp GCAGATCCCACACTGCTCTTTTCATCCAAAGACGAGTaGCAGAGTGGGGACAATTGCCAGCACGAGAGAAAG +
Preference number: 3 (lower is better)
Translates to: ADPTLLFSSKDE*QSGDNCQHERK
Trigger: CTTTCTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 72 bp GCCAGAGTGGGGACAATTGCCAGCACGAGAGAAAGGTaGACAGTCCGAAGTGTACCATGCATGATTTCCAGA +
Preference number: 3 (lower is better)
Translates to: ARVGTIASTRER*TVRSVPCMISR
Trigger: TCTGGAAATCATGCATGGTACACTTCGGACTGTCCACCTTTCTCTCGTGCTGGCAATTGTCCCCACTCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp AGCACGAGAGAAAGGTGGACAGTCCGAAGTGTACCATaGATGATTTCCAGAACCTCTCAGGAGATGAGCTGG +
Preference number: 3 (lower is better)
Translates to: STRERWTVRSVP*MISRTSQEMSW
Trigger: CCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCATGGTACACTTCGGACTGTCCACCTTTCTCTCGTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CAA 90 bp GGTGGTGACCGAGTGCAAGATGCAGGGGTTTCAGAAGACACAAGCAACTCTGCAGCATCGGTTGAGAGATaGTTCCTTCCTTTTTATTTG +
Preference number: 3 (lower is better)
Translates to: GGDRVQDAGVSEDTSNSAASVER*FLPFYL
Trigger: CAAATAAAAAGGAAGGAACAATCTCTCAACCGATGC...TGCAGAGTTGCTTGTGTCTTCTGAAACCCCTGCATCTTGCACTCGGTCACCACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR-3UTR CAA 90 bp GCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCAGAGCTGAAGAAAAACTaGCTCTGGTGTTCCCTCTGC +
Preference number: 3 (lower is better)
Translates to: AKGVTGEFHVFLFPLSCAELKKN*LWCSLC
Trigger: GCAGAGGGAACACCAGAGCAAGTTTTTCTTCAGCTC...TGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
3UTR-3UTR CAA 90 bp ATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTGCTCACTCAGAGCGGCTTGTAGGCTaGGCCAGAGTTGTTAGCATC +
Preference number: 3 (lower is better)
Translates to: MILKIQLCPGTIPVFAHSERLVG*ARVVSI
Trigger: GATGCTAACAACTCTGGCCAAGCCTACAAGCCGCTC...TGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTTAAAATCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CCA 72 bp GCCATTTTGAAATATTTCTGTCAGGTTCCACTGGCTTaGTACCTTGTATCCCATAGGACATTTAAAAGGCCC +
Preference number: 3 (lower is better)
Translates to: AILKYFCQVPLA*YLVSHRTFKRP
Trigger: GGGCCTTTTAAATGTCCTATGGGATACAAGGTACCAAGCCAGTGGAACCTGACAGAAATATTTCAAAATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR GCA 72 bp AAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTaGTCACTCATTGAGGAAAGAGTCATGCAAACCAAA +
Preference number: 3 (lower is better)
Translates to: KNTVVSWNHTSV*SLIEERVMQTK
Trigger: TTTGGTTTGCATGACTCTTTCCTCAATGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CAA 72 bp TTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTaGACACAGGCACAACACAGGCGCTGCCGGACACCG +
Preference number: 4 (lower is better)
Translates to: FTLGCIYSRSRP*TQAQHRRCRTP
Trigger: CGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp GCACAAAACACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTGGTGTTGCCCAGGCTaGCCACCATGGCCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: AQNTHASRWDAFTHGAGPWCCPG*PPWPPS
Trigger: TGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCA...AGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGTTTTGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp GCTGGGATGCATTTACTCACGGAGCAGGCCCTTGACACAGGCACAACACAGGCGCTGCTGAGCAGTCCATaGAGATCACCAAGTGTGGGT +
Preference number: 4 (lower is better)
Translates to: AGMHLLTEQALDTGTTQALLSSP*RSPSVG
Trigger: ACCCACACTTGGTGATCTGCATGGACTGCTCAGCAG...CGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TCACGGAGCAGGCCCTTGACACAGGCACAACACAGGCGCTGCCGGACACCGTGTTTCACTAGTCTCCTTTaGGTTGCTTTCAGGTTGTCA +
Preference number: 4 (lower is better)
Translates to: SRSRPLTQAQHRRCRTPCFTSLL*VAFRLS
Trigger: TGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAA...ACACGGTGTCCGGCAGCGCCTGTGTTGTGCCTGTGTCAAGGGCCTGCTCCGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TGGGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGGTGTTGCCCAGGCTaGCCACCATGGCCTCCTTCA +
Preference number: 4 (lower is better)
Translates to: WVGMGTKRKVLRVNSMYFWCCPG*PPWPPS
Trigger: TGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCA...GAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp GCTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGGACAATTGCCAGCACGAGAGAATTGTTGTCTCCTGTaGGGCCAGCTCCCCATTGGT +
Preference number: 4 (lower is better)
Translates to: ALFIQRRVPEWGQLPARENCCLL*GQLPIG
Trigger: ACCAATGGGGAGCTGGCCCCACAGGAGACAACAATT...CTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TGGGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCCAATCAGGAAGCCCTTaGTGTTGCCCAGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: WVGMGTKRKVLRVNSMYFQSGSP*CCPGWP
Trigger: TGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTG...GAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
3UTR CAA 72 bp GCCGAACTGCCATGTGGAGAGGAGCGGCTTGTAGGCTaGGCCAGAGTTGTTAGCATCTATGACACTGTTCAA +
Preference number: 4 (lower is better)
Translates to: AELPCGEERLVG*ARVVSIYDTVQ
Trigger: TTGAACAGTGTCATAGATGCTAACAACTCTGGCCAAGCCTACAAGCCGCTCCTCTCCACATGGCAGTTCGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp GCACAAAACACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTGACTCCATTTTCTGTTaGTGCTGGCACTGTGGATTT +
Preference number: 4 (lower is better)
Translates to: AQNTHASRWDAFTHGAGPDSIFC*CWHCGF
Trigger: AAATCCACAGTGCCAGCAGCAACAGAAAATGGAGTC...AGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGTTTTGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp TGGCCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGCACACTGGGTGCCTTTaGCAGAGCCAGGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: WPELLASMTLFKIASVPEHTGCL*QSQGHP
Trigger: TGGGTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTG...CTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp ACACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTGACACATGTCACGGATCAGTTTaGTTCTTTCTGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: TPTLHAGMHLLTEQALDTCHGSV*FFLTLR
Trigger: CCTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACA...TGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp GGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTCTGTAACCTCTCCTTaGGCCTCTGGTTGGCACAAG +
Preference number: 4 (lower is better)
Translates to: GGDGDKAKGVTGEFHVFLSVTSP*ASGWHK
Trigger: CTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGA...CAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp TGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTCCTCTCGTAGTAGGTaGCGACGGGGATGGACGCTC +
Preference number: 4 (lower is better)
Translates to: WHRLRDCSFLFIWQYVRESSRSR*RRGWTL
Trigger: GAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGA...CTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp GGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGGATGTCATGGAACACTaGGTCTTCATCTCGGTCGGC +
Preference number: 4 (lower is better)
Translates to: GGDGDKAKGVTGEFHVFLDVMEH*VFISVG
Trigger: GCCGACCGAGATGAAGACGCAGTGTTCCATGACATC...CAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp CACTTAGTTGTGCATTTTCTCCTTCAGAAAACAGAGTCAATAGCTGTGCAGAGCCACACTGGGTGCCTTTaGCAGAGCCAGGGCCACCCA +
Preference number: 4 (lower is better)
Translates to: HLVVHFLLQKTESIAVQSHTGCL*QSQGHP
Trigger: TGGGTGGCCCTGGCTCTGGCAAAGGCACCCAGTGTG...GCTCTGCACAGCTATTGACTCTGTTTTCTGAAGGAGAAAATGCACAACTAAGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp CCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACCAGCATCAAACATCATaGAAGGGTCAAGGTCACTTG +
Preference number: 4 (lower is better)
Translates to: PEAGLEQADPTLLFSSKDQHQTS*KGQGHL
Trigger: CAAGTGACCTTGACCCTTCCATGATGTTTGATGCTG...GTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp GCTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGGACAATTGCCAGCACGAGAGTCTTCTTTTCCTGGCTaGCAAATGTGTCCCACTTCA +
Preference number: 4 (lower is better)
Translates to: ALFIQRRVPEWGQLPARESSFPG*QMCPTS
Trigger: TGAAGTGGGACACATTTGTCAGCCAGGAAAAGAAGA...CTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp CCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACCCAAATACATTTAGCTaGTCATCGTCCTGGTTATCG +
Preference number: 4 (lower is better)
Translates to: PEAGLEQADPTLLFSSKDPNTFS*SSSWLS
Trigger: CGATAACCAGGACGATGATCAGCTAAATGTATTTGG...GTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp CCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCCACCAGGTCAGGGGTaGAGATCTGGTCCTCAAAAG +
Preference number: 4 (lower is better)
Translates to: PSLASVERLFLPFYLAVCPPGQG*RSGPQK
Trigger: CTTTTGAGGACCAGATCTGCACCCCTGACCTGGTGG...ACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp GCTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGGACAATTGCCAGCACGAGAGTTTCCAAGTACTCTATaGGGTCTTCTGGCTTGGAAC +
Preference number: 4 (lower is better)
Translates to: ALFIQRRVPEWGQLPAREFPSTL*GLLAWN
Trigger: GTTCCAAGCCAGAAGACCCCATAGAGTACTTGGAAA...CTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp GCTCTTTTCATCCAAAGACGAGTGCCAGAGTGGGGACAATTGCCAGCACGAGAGAGCCTCCTAGCTCCTTaGCTTTCTGTAAACAAGTTT +
Preference number: 4 (lower is better)
Translates to: ALFIQRRVPEWGQLPARESLLAP*LSVNKF
Trigger: AAACTTGTTTACAGAAAGTCAAGGAGCTAGGAGGCT...CTCTCGTGCTGGCAATTGTCCCCACTCTGGCACTCGTCTTTGGATGAAAAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp TTCCACTTAGTTGTGCATTTTCTCCTTCAGAAAACAGAGTCAATAGCTGTGCAGTCCTCTCGTAGTAGGTaGCGACGGGGATGGACGCTC +
Preference number: 4 (lower is better)
Translates to: FHLVVHFLLQKTESIAVQSSRSR*RRGWTL
Trigger: GAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGA...CTGCACAGCTATTGACTCTGTTTTCTGAAGGAGAAAATGCACAACTAAGTGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
CDS-3UTR GCA 90 bp CTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACGGAATCCATACCGCTCTaGAATTTTCAAACTCTGAGT +
Preference number: 4 (lower is better)
Translates to: LRQGWNRQIPHCSFHPKTESIPL*NFQTLS
Trigger: ACTCAGAGTTTGAAAATTGCAGAGCGGTATGGATTC...CGTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TGGCCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGGGAAAACTGGTGGATTaGAGGGAGCCGGTCATACCG +
Preference number: 4 (lower is better)
Translates to: WPELLASMTLFKIASVPEGKLVD*REPVIP
Trigger: CGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCC...CTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp CCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCTCTCTATGGAAAACTaGTGGATTGGAGGGAGCCGG +
Preference number: 4 (lower is better)
Translates to: PSLASVERLFLPFYLAVCLSMEN*WIGGSR
Trigger: CCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAG...ACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp CCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGTGGTCTGAGGTCAGTTCCTaGCGCAGGAGCTCACCAGTA +
Preference number: 4 (lower is better)
Translates to: PELLASMTLFKIASVPEWSEVSS*RRSSPV
Trigger: TACTGGTGAGCTCCTGCGCCAGGAACTGACCTCAGA...CCACTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp CCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACAAGAAAAACTTGCTCTaGTGTTCCCTCTGCATTTAC +
Preference number: 4 (lower is better)
Translates to: PEAGLEQADPTLLFSSKDKKNLL*CSLCIY
Trigger: GTAAATGCAGAGGGAACACCAGAGCAAGTTTTTCTT...GTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TTGAAATATTTCTGTCAGGTTCCACTGGCTTGGTACCTTGTATCCCATAGGACACTCTCCTTGAGCCTCTaGTTGGCACAAGCCAGGAAC +
Preference number: 4 (lower is better)
Translates to: LKYFCQVPLAWYLVSHRTLSLSL*LAQARN
Trigger: GTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAG...TGTCCTATGGGATACAAGGTACCAAGCCAGTGGAACCTGACAGAAATATTTCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp GCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATCTGAGGTCAGTTCCTaGCGCAGGAGCTCACCAGTA +
Preference number: 4 (lower is better)
Translates to: AKGVTGEFHVFLFPLSCASEVSS*RRSSPV
Trigger: TACTGGTGAGCTCCTGCGCCAGGAACTGACCTCAGA...TGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp CTTAGTTGTGCATTTTCTCCTTCAGAAAACAGAGTCAATAGCTGTGCAGAGCTGGCAGATCACCAAGTGTaGGTCTCCGATCCTTCGTCC +
Preference number: 4 (lower is better)
Translates to: LSCAFSPSENRVNSCAELADHQV*VSDPSS
Trigger: GGACGAAGGATCGGAGACCCACACTTGGTGATCTGC...CAGCTCTGCACAGCTATTGACTCTGTTTTCTGAAGGAGAAAATGCACAACTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp TGGGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCCCAAATACATTTAGCTaGTCATCGTCCTGGTTATCG +
Preference number: 4 (lower is better)
Translates to: WVGMGTKRKVLRVNSMYFPNTFS*SSSWLS
Trigger: CGATAACCAGGACGATGATCAGCTAAATGTATTTGG...GAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp TGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTCCTCAAATCCTCCATaGAGCCTCCCTCTGTGTCTT +
Preference number: 4 (lower is better)
Translates to: WHRLRDCSFLFIWQYVRESSNPP*SLPLCL
Trigger: AAGACACAGAGGGAGGCTTCATGGAGGATTTGAGGA...CTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp GGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTTCCTCAAATCCTCCATaGAGCCTCCCTCTGTGTCTT +
Preference number: 4 (lower is better)
Translates to: GDKAKGVTGEFHVFLFPLSSNPP*SLPLCL
Trigger: AAGACACAGAGGGAGGCTTCATGGAGGATTTGAGGA...AAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp CTTAGTTGTGCATTTTCTCCTTCAGAAAACAGAGTCAATAGCTGTGCAGAGCTGCTGCTCTGGCTTCTCTaGAGAAGGCGGTTAGTCATG +
Preference number: 4 (lower is better)
Translates to: LSCAFSPSENRVNSCAELLLWLL*RRRLVM
Trigger: CATGACTAACCGCCTTCTTCAGAGAAGCCAGAGCAG...CAGCTCTGCACAGCTATTGACTCTGTTTTCTGAAGGAGAAAATGCACAACTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp CCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGTGGCCCACTGAGATGTACTaGAATCCATACCGCTCTGCA +
Preference number: 4 (lower is better)
Translates to: PELLASMTLFKIASVPEWPTEMY*NPYRSA
Trigger: TGCAGAGCGGTATGGATTCCAGTACATCTCAGTGGG...CCACTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp GTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTCTGGGCAACATCCCTTaGGAATCCATCAATCACAAT +
Preference number: 4 (lower is better)
Translates to: VGMGTKRKVLRVNSMYFCLGNIP*ESINHN
Trigger: ATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAG...ACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp TTGAAATATTTCTGTCAGGTTCCACTGGCTTGGTACCTTGTATCCCATAGGACATCAGGGGTGCAGATCTaGTCCTCAAAAGACAGAGCC +
Preference number: 4 (lower is better)
Translates to: LKYFCQVPLAWYLVSHRTSGVQI*SSKDRA
Trigger: GGCTCTGTCTTTTGAGGACCAGATCTGCACCCCTGA...TGTCCTATGGGATACAAGGTACCAAGCCAGTGGAACCTGACAGAAATATTTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp GCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATCTATGGAAAACTGGTaGATTGGAGGGAGCCGGTCA +
Preference number: 4 (lower is better)
Translates to: AKGVTGEFHVFLFPLSCASMENW*IGGSRS
Trigger: TGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGA...TGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp CCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGTGGCCGTGTCACTCTCTATaGAAAACTGGTGGATTGGAG +
Preference number: 4 (lower is better)
Translates to: PELLASMTLFKIASVPEWPCHSL*KTGGLE
Trigger: CTCCAATCCACCAGTTTTCCATAGAGAGTGACACGG...CCACTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp AAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTCAATCAGGAAGCCCTTaGTGTTGCCCAGGCTGGCCA +
Preference number: 4 (lower is better)
Translates to: KGVTGEFHVFLFPLSCAFQSGSP*CCPGWP
Trigger: TGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTG...AAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp CCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCTTGAATTTTCAGGCATaGCATTTCGGAGGAAGGATC +
Preference number: 4 (lower is better)
Translates to: PPWHRLRDCSFLFIWQYVLNFQA*HFGGRI
Trigger: GATCCTTCCTCCGAAATGTCATGCCTGAAAATTCAA...GACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp CCCTCCCTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTTCCATTTTCTGTTGCTaGTGGCACTGTGGATTTTCT +
Preference number: 4 (lower is better)
Translates to: PSLASVERLFLPFYLAVCSIFCC*WHCGFS
Trigger: AGAAAATCCACAGTGCCAGCAGCAACAGAAAATGGA...ACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAGGGAGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp CCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTAATTGTCTCAGATCAAAACTAGCAGATCACCAAGTGTaGGTCTCCGATCCTTCGTCC +
Preference number: 4 (lower is better)
Translates to: PSFLFGSMSGSNCLRSKLADHQV*VSDPSS
Trigger: GGACGAAGGATCGGAGACCCACACTTGGTGATCTGC...TAGTTTTGATCTGAGACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp TGGCCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGGCAATTTTCAAACTCTaGGTACCCTTTCCACTTCCT +
Preference number: 4 (lower is better)
Translates to: WPELLASMTLFKIASVPEAIFKL*VPFPLP
Trigger: AGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGC...CTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp AAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTAGTCATGGTGTCTGCTaGGCAGTCCATGCAGATCAC +
Preference number: 4 (lower is better)
Translates to: KGVTGEFHVFLFPLSCAFSHGVC*AVHADH
Trigger: GTGATCTGCATGGACTGCTCAGCAGACACCATGACT...AAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp AAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTAGTCATGGTGTCTGCTaGGCAGTCCATGCAGATCAC +
Preference number: 4 (lower is better)
Translates to: KVLRVNSMYFCFHLVVHFSHGVC*AVHADH
Trigger: GTGATCTGCATGGACTGCTCAGCAGACACCATGACT...AAAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR TCA 90 bp ATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTGCTCACTCACTGCTCTGGCTTCTCTaGAGAAGGCGGTTAGTCATG +
Preference number: 4 (lower is better)
Translates to: MILKIQLCPGTIPVFAHSLLWLL*RRRLVM
Trigger: CATGACTAACCGCCTTCTTCAGAGAAGCCAGAGCAG...TGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTTAAAATCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp AAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTCTGCTGAGCAGTCCATaGAGATCACCAAGTGTGGGT +
Preference number: 4 (lower is better)
Translates to: KVLRVNSMYFCFHLVVHFLLSSP*RSPSVG
Trigger: ACCCACACTTGGTGATCTGCATGGACTGCTCAGCAG...AAAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp CCAGAGTTGTTAGCATCTATGACACTGTTCAAAATAGCTAGTGTCCCAGAGTGGATTTTCTGTTGCTGCTaGCACTGTGGATTTTCTTCC +
Preference number: 4 (lower is better)
Translates to: PELLASMTLFKIASVPEWIFCCC*HCGFSS
Trigger: GGAAGAAAATCCACAGTGCCAGCAGCAACAGAAAAT...CCACTCTGGGACACTAGCTATTTTGAACAGTGTCATAGATGCTAACAACTCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR TCA 90 bp ATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTGCTCACTCAGGGCGGCATTCTGCTTaGAGTTCACTAGTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: MILKIQLCPGTIPVFAHSGRHSA*SSLVSF
Trigger: AAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCC...TGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTTAAAATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp AAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTGCCACGCTGATGTCATaGAACACTGCGTCTTCATCT +
Preference number: 4 (lower is better)
Translates to: KGVTGEFHVFLFPLSCAFATLMS*NTASSS
Trigger: AGATGAAGACGCAGTGTTCCATGACATCAGCGTGGC...AAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CCA 90 bp ATGATTTTAAAAATACAGTTGTGTCCTGGAACCATACCAGTGTTTGCTCACTCACGGAGCCTCTTTGTTTaGAAACAGCTTGCTGTCGAC +
Preference number: 4 (lower is better)
Translates to: MILKIQLCPGTIPVFAHSRSLFV*KQLAVD
Trigger: GTCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCG...TGAGTGAGCAAACACTGGTATGGTTCCAGGACACAACTGTATTTTTAAAATCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
3UTR CAA 72 bp CTGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTaGGCAGTATGTCAGGGAGTAATTGTCTCAGATCAA +
Preference number: 4 (lower is better)
Translates to: LASVERLFLPFY*AVCQGVIVSDQ
Trigger: TTGATCTGAGACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR GCA 90 bp AAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTGTCACGGATCAGTTTaGTTCTTTCTGACTCTGAGG +
Preference number: 4 (lower is better)
Translates to: KGVTGEFHVFLFPLSCAFCHGSV*FFLTLR
Trigger: CCTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACA...AAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CCA 90 bp AAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTACCCTTTCCACTTCCTaGACCACCTATGACAAGAAT +
Preference number: 4 (lower is better)
Translates to: KVLRVNSMYFCFHLVVHFTLSTS*TTYDKN
Trigger: ATTCTTGTCATAGGTGGTCCAGGAAGTGGAAAGGGT...AAAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp CATCTGGCCGCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTTaGGCCTCTGGTTGGCACAAGCCAGGAACACCACCAGGTCAGGGG +
Preference number: 5 (lower is better)
Translates to: HLAAPAAPHASVTSP*ASGWHKPGTPPGQG
Trigger: CCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp CGCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTaGTTGGCACAAGCCAGGAACACCACCAGGTCAGGGGTGCAGATC +
Preference number: 5 (lower is better)
Translates to: RPCCSARFCNLSLSL*LAQARNTTRSGVQI
Trigger: GATCTGCACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp AGCCGTCAATCAGGAAGCCCTTGGTGTTGCCCAGGCTGGCCACCATaGCCTCCTTCAGCAGCTCCAGAACGACACCCGAGGGCACCAGAT +
Preference number: 5 (lower is better)
Translates to: SRQSGSPWCCPGWPP*PPSAAPERHPRAPD
Trigger: ATCTGGTGCCCTCGGGTGTCGTTCTGGAGCTGCTGAAGGAGGCCATGGTGGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGACGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS TCA 90 bp CCTCTGCATTTACCTTCCGTAGCTGTGTTTTCCTCTCGTAGTAGGTaGCGACGGGGATGGACGCTCGGTGGTAGGCCTCCAGGCGCTTGG +
Preference number: 5 (lower is better)
Translates to: PLHLPSVAVFSSRSR*RRGWTLGGRPPGAW
Trigger: CCAAGCGCCTGGAGGCCTACCACCGAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGAAAACACAGCTACGGAAGGTAAATGCAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp GCACAAAACACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTCAATCAGGAAGCCCTaGGTGTTGCCCAGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: AQNTHASRWDAFTHGAGPSIRKP*VLPRLA
Trigger: GGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGA...AGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGTTTTGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 90 bp AGTCTCCTTTGGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTGCTaGTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: SLLWVAFRLSSGRPC*SARFCNLSLSLWLA
Trigger: TGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp TCTGGCTTGGAACACATCAAGCCATTGAGCAGGCTCTCGAAAAGCTaGGGAATGTCCCTCCGGGCCAGGTACTCCTTGGCGTCGTTGGTG +
Preference number: 5 (lower is better)
Translates to: SGLEHIKPLSRLSKS*GMSLRARYSLASLV
Trigger: CACCAACGACGCCAAGGAGTACCTGGCCCGGAGGGACATTCCTCAGCTTTTCGAGAGCCTGCTCAATGGCTTGATGTGTTCCAAGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 90 bp ACTAGTCTCCTTTGGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTaGTGCTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTGGTTG +
Preference number: 5 (lower is better)
Translates to: TSLLWVAFRLSSGRP*CSARFCNLSLSLWL
Trigger: CAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp CTTCTATCAGCTCCGCCGTCTCCGACAGGTCCGTGTCACTCTCTATaGAAAACTGGTGGATTGGAGGGAGCCGGTCATACCGCCGATATG +
Preference number: 5 (lower is better)
Translates to: LLSAPPSPTGPCHSL*KTGGLEGAGHTADM
Trigger: CATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGGCGGAGCTGATAGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp GCTGCTCTGGCTTCTCTGAAGAAGGCGGTTAGTCATGGTGTCTGCTaGGCAGTCCATGCAGATCACCAAGTGTGGGTCTCCGATCCTTCG +
Preference number: 5 (lower is better)
Translates to: AALASLKKAVSHGVC*AVHADHQVWVSDPS
Trigger: CGAAGGATCGGAGACCCACACTTGGTGATCTGCATGGACTGCTCAGCAGACACCATGACTAACCGCCTTCTTCAGAGAAGCCAGAGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS CCA 90 bp AGCTCCGCCGTCTCCGACAGGTCCGTGTCACTCTCTATGGAAAACTaGTGGATTGGAGGGAGCCGGTCATACCGCCGATATGGAAAGTTT +
Preference number: 5 (lower is better)
Translates to: SSAVSDRSVSLSMEN*WIGGSRSYRRYGKF
Trigger: AAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGGCGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp TTCACTAGTGGGGCGGCATTCTGCTTGAAGTTCACTAGTCTCCTTTaGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTGCTGCTCCGCA +
Preference number: 5 (lower is better)
Translates to: FTSGAAFCLKFTSLL*VAFRLSSGRPCCSA
Trigger: TGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp ATGCATGATTTCCAGAACCTCTCAGGAGATGAGCTGGGAAGGACACAGCCAGCGGTGTCCCACTTCACCTaGTCACAGCCTCCTAGCTCC +
Preference number: 5 (lower is better)
Translates to: MHDFQNLSGDELGRTQPAVSHFT*SQPPSS
Trigger: GGAGCTAGGAGGCTGTGACAAGGTGAAGTGGGACAC...CGCTGGCTGTGTCCTTCCCAGCTCATCTCCTGAGAGGTTCTGGAAATCATGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp CCAAGTACTCTATGGGGTCTTCTGGCTTGGAACACATCAAGCCATTaGGCAGGCTCTCGAAAAGCTGAGGAATGTCCCTCCGGGCCAGGT +
Preference number: 5 (lower is better)
Translates to: PSTLWGLLAWNTSSH*AGSRKAEECPSGPG
Trigger: ACCTGGCCCGGAGGGACATTCCTCAGCTTTTCGAGAGCCTGCTCAATGGCTTGATGTGTTCCAAGCCAGAAGACCCCATAGAGTACTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp GCAGCTCCAGAACGACACCCGAGGGCACCAGATCTCCACGCTCCATaGTGTCACGGATCAGTTTGCTTCTTTCTGACTCTGAGGTCAGTT +
Preference number: 5 (lower is better)
Translates to: AAPERHPRAPDLHAP*CHGSVCFFLTLRSV
Trigger: AACTGACCTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCGGGTGTCGTTCTGGAGCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS CCA 90 bp TCCGCCGTCTCCGACAGGTCCGTGTCACTCTCTATGGAAAACTGGTaGATTGGAGGGAGCCGGTCATACCGCCGATATGGAAAGTTTGAA +
Preference number: 5 (lower is better)
Translates to: SAVSDRSVSLSMENW*IGGSRSYRRYGKFE
Trigger: TTCAAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGGCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp ACACCCACGCTTCACGCTGGGATGCATTTACTCACGGAGCAGGCCCTTGACACAGAGCTGAAGAAAAACTaGCTCTGGTGTTCCCTCTGC +
Preference number: 5 (lower is better)
Translates to: TPTLHAGMHLLTEQALDTELKKN*LWCSLC
Trigger: GCAGAGGGAACACCAGAGCAAGTTTTTCTTCAGCTC...TGTGTCAAGGGCCTGCTCCGTGAGTAAATGCATCCCAGCGTGAAGCGTGGGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp TCGGAGCCTCTTTGTTTGGAAACAGCTTGCTGTCGACGGCCACGCTaGTGTCATGGAACACTGCGTCTTCATCTCGGTCGGCATCAAAAG +
Preference number: 5 (lower is better)
Translates to: SEPLCLETACCRRPR*CHGTLRLHLGRHQK
Trigger: CTTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 90 bp TGGAAACAGCTTGCTGTCGACGGCCACGCTGATGTCATGGAACACTaGGTCTTCATCTCGGTCGGCATCAAAAGTCACGATGAGTCCCTT +
Preference number: 5 (lower is better)
Translates to: WKQLAVDGHADVMEH*VFISVGIKSHDESL
Trigger: AAGGGACTCATCGTGACTTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp AGAGTCATGCAAACCAAACTGAATGTGGTGGTGACCGAGTGCAAGATGCAGGGGTGGAAAACTGGTGGATaGGAGGGAGCCGGTCATACC +
Preference number: 5 (lower is better)
Translates to: RVMQTKLNVVVTECKMQGWKTGG*EGAGHT
Trigger: GGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCA...CCCCTGCATCTTGCACTCGGTCACCACCACATTCAGTTTGGTTTGCATGACTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp CCTGAGGCAGGGCTGGAACAGGCAGATCCCACACTGCTCTTTTCATCCAAAGACAGACTCCATTTTCTGTaGCTGCTGGCACTGTGGATT +
Preference number: 5 (lower is better)
Translates to: PEAGLEQADPTLLFSSKDRLHFL*LLALWI
Trigger: AATCCACAGTGCCAGCAGCAACAGAAAATGGAGTCT...GTCTTTGGATGAAAAGAGCAGTGTGGGATCTGCCTGTTCCAGCCCTGCCTCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp GTGATTGTCCTCCATTTAGGGGCGGTAACGTCTTCTTTTCCTGGCTaGCAAATGTGTCCCACTTCACCTTGTCACAGCCTCCTAGCTCCT +
Preference number: 5 (lower is better)
Translates to: VIVLHLGAVTSSFPG*QMCPTSPCHSLLAP
Trigger: AGGAGCTAGGAGGCTGTGACAAGGTGAAGTGGGACACATTTGTCAGCCAGGAAAAGAAGACGTTACCGCCCCTAAATGGAGGACAATCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp CATGGAACACTGCGTCTTCATCTCGGTCGGCATCAAAAGTCACGATaGGTCCCTTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCT +
Preference number: 5 (lower is better)
Translates to: HGTLRLHLGRHQKSR*VPSLGSTSLVGRHS
Trigger: AGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCATCGTGACTTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp TCTTTGTTTGGAAACAGCTTGCTGTCGACGGCCACGCTGATGTCATaGAACACTGCGTCTTCATCTCGGTCGGCATCAAAAGTCACGATG +
Preference number: 5 (lower is better)
Translates to: SLFGNSLLSTATLMS*NTASSSRSASKVTM
Trigger: CATCGTGACTTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp TGGCATCGGTTGAGAGATTGTTCCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTGGGTTGCTTTCAGGTaGTCATCTGGCCGCCCCTGC +
Preference number: 5 (lower is better)
Translates to: WHRLRDCSFLFIWQYVREWVAFR*SSGRPC
Trigger: GCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCA...CTCCCTGACATACTGCCAAATAAAAAGGAAGGAACAATCTCTCAACCGATGCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp GGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTTCAATCAGGAAGCCCTaGGTGTTGCCCAGGCTGGCC +
Preference number: 5 (lower is better)
Translates to: GDKAKGVTGEFHVFLFPLSIRKP*VLPRLA
Trigger: GGCCAGCCTGGGCAACACCAAGGGCTTCCTGATTGA...AAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CAA 90 bp GGTGGTGACCGAGTGCAAGATGCAGGGGTTTCAGAAGACACAAGCAACTCTGCACAGCCTCCTAGCTCCTaGACTTTCTGTAAACAAGTT +
Preference number: 5 (lower is better)
Translates to: GGDRVQDAGVSEDTSNSAQPPSS*TFCKQV
Trigger: AACTTGTTTACAGAAAGTCAAGGAGCTAGGAGGCTG...TGCAGAGTTGCTTGTGTCTTCTGAAACCCCTGCATCTTGCACTCGGTCACCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp TGGGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCCCTGGGCAACATCCCTaGGGAATCCATCAATCACAA +
Preference number: 5 (lower is better)
Translates to: WVGMGTKRKVLRVNSMYFPGQHP*GIHQSQ
Trigger: TTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGG...GAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp GTCCCTTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTGCTTaGAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTTGTCATCTG +
Preference number: 5 (lower is better)
Translates to: VPSLGSTSLVGRHSA*SSLVSFGLLSGCHL
Trigger: CAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp GGTGCAGATCTGGTCCTCAAAAGACAGAGCCTGGGCAACATCCCTTaGGAATCCATCAATCACAATGCCTTCTTCATCGGGTATTTGCAT +
Preference number: 5 (lower is better)
Translates to: GADLVLKRQSLGNIP*ESINHNAFFIGYLH
Trigger: ATGCAAATACCCGATGAAGAAGGCATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGGCTCTGTCTTTTGAGGACCAGATCTGCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 90 bp TCTTCATCTCGGTCGGCATCAAAAGTCACGATGAGTCCCTTCTCTTaGAAGTACTTCACTAGTGGGGCGGCATTCTGCTTGAAGTTCACT +
Preference number: 5 (lower is better)
Translates to: SSSRSASKVTMSPFS*KYFTSGAAFCLKFT
Trigger: AGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCATCGTGACTTTTGATGCCGACCGAGATGAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 90 bp ATGAGTCCCTTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTaGTTGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTTGTCA +
Preference number: 5 (lower is better)
Translates to: MSPFSWKYFTSGAAF*LKFTSLLWVAFRLS
Trigger: TGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp TGGGTGGGGATGGGGACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCATGTCACGGATCAGTTaGCTTCTTTCTGACTCTGAG +
Preference number: 5 (lower is better)
Translates to: WVGMGTKRKVLRVNSMYFMSRIS*LLSDSE
Trigger: CTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACAT...GAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTCCCCATCCCCACCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CAA 90 bp GACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTCCAAACTCTTCCCCTaGCTTCACTTCCCGGGGGTA +
Preference number: 5 (lower is better)
Translates to: DKAKGVTGEFHVFLFPLSSKLFP*LHFPGV
Trigger: TACCCCCGGGAAGTGAAGCAAGGGGAAGAGTTTGGA...ACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CAA 90 bp GCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATCGGAGCCTCTTTGTTaGGAAACAGCTTGCTGTCGA +
Preference number: 5 (lower is better)
Translates to: AKGVTGEFHVFLFPLSCASEPLC*ETACCR
Trigger: TCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCGA...TGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp ACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTTCCAAACTCTTCCCCTaGCTTCACTTCCCGGGGGTA +
Preference number: 5 (lower is better)
Translates to: TKRKVLRVNSMYFCFHLVSKLFP*LHFPGV
Trigger: TACCCCCGGGAAGTGAAGCAAGGGGAAGAGTTTGGA...AACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CAA 90 bp GACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTTCTGTAACCTCTCCTaGAGCCTCTGGTTGGCACAA +
Preference number: 5 (lower is better)
Translates to: DKAKGVTGEFHVFLFPLSFCNLS*SLWLAQ
Trigger: TTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAA...ACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 90 bp ACTGAGATGTACTGGAATCCATACCGCTCTGCAATTTTCAAACTCTaGGTACCCTTTCCACTTCCTGGACCACCTATGACAAGAATGATT +
Preference number: 5 (lower is better)
Translates to: TEMYWNPYRSAIFKL*VPFPLPGPPMTRMI
Trigger: AATCATTCTTGTCATAGGTGGTCCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGCAGAGCGGTATGGATTCCAGTACATCTCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp CCTTCCTTTTTATTTGGCAGTATGTCAGGGAGTAATTGTCTCAGATCAAAACTAGGGGCGGCATTCTGCTaGAAGTTCACTAGTCTCCTT +
Preference number: 5 (lower is better)
Translates to: PSFLFGSMSGSNCLRSKLGAAFC*KFTSLL
Trigger: AAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCC...TAGTTTTGATCTGAGACAATTACTCCCTGACATACTGCCAAATAAAAAGGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp AAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTGTGCATTTTATGACAAGAATGATTTaGGGCCGAGGTCTAGTCGGG +
Preference number: 5 (lower is better)
Translates to: KVLRVNSMYFCFHLVVHFMTRMI*GRGLVG
Trigger: CCCGACTAGACCTCGGCCCAAAATCATTCTTGTCAT...AAAATGCACAACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS-3UTR CAA 90 bp ACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTATGTCACGGATCAGTTaGCTTCTTTCTGACTCTGAG +
Preference number: 5 (lower is better)
Translates to: TKRKVLRVNSMYFCFHLVMSRIS*LLSDSE
Trigger: CTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACAT...AACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS-3UTR CAA 90 bp ACAAAGCGAAAGGTGTTACGGGTGAATTCCATGTATTTCTGTTTCCACTTAGTTCCATTGGTGATTATCTaGGCGATCAGACTCCATTTT +
Preference number: 5 (lower is better)
Translates to: TKRKVLRVNSMYFCFHLVPLVII*AIRLHF
Trigger: AAAATGGAGTCTGATCGCCAAGATAATCACCAATGG...AACTAAGTGGAAACAGAAATACATGGAATTCACCCGTAACACCTTTCGCTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp TCATCTGGCCGCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTaGAGCCTCTGGTTGGCACAAGCCAGGAACACCACCAGGTCAGGG +
Preference number: 6 (lower is better)
Translates to: SSGRPCCSARFCNLS*SLWLAQARNTTRSG
Trigger: CCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp CGCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTaGAGCCTCTGGTTGGCACAAGCCAGGAACACCACC +
Preference number: 6 (lower is better)
Translates to: RPCCSARFCNLS*SLWLAQARNTT
Trigger: GGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp CCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTGGTaGGCACAAGCCAGGAACACCACCAGGTCAGGGGTGCAGATCTGG +
Preference number: 6 (lower is better)
Translates to: PCCSARFCNLSLSLW*AQARNTTRSGVQIW
Trigger: CCAGATCTGCACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp GCCCCTGCTGCTCCGCACGCTTCTGTAACCTCTCCTTaGGCCTCTGGTTGGCACAAGCCAGGAACACCACCA +
Preference number: 6 (lower is better)
Translates to: APAAPHASVTSP*ASGWHKPGTPP
Trigger: TGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 72 bp TGGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTGCTaGTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTC +
Preference number: 6 (lower is better)
Translates to: WVAFRLSSGRPC*SARFCNLSLSL
Trigger: GAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp GCTCCGCCGTCTCCGACAGGTCCGTGTCACTCTCTATaGAAAACTGGTGGATTGGAGGGAGCCGGTCATACC +
Preference number: 6 (lower is better)
Translates to: APPSPTGPCHSL*KTGGLEGAGHT
Trigger: GGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGGCGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp TGCTCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTaGTTGGCACAAGCCAGGAACACCACCAGGTCAGGG +
Preference number: 6 (lower is better)
Translates to: CSARFCNLSLSL*LAQARNTTRSG
Trigger: CCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp TCCGCACGCTTCTGTAACCTCTCCTTGAGCCTCTGGTaGGCACAAGCCAGGAACACCACCAGGTCAGGGGTG +
Preference number: 6 (lower is better)
Translates to: SARFCNLSLSLW*AQARNTTRSGV
Trigger: CACCCCTGACCTGGTGGTGTTCCTGGCTTGTGCCAACCAGAGGCTCAAGGAGAGGTTACAGAAGCGTGCGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 72 bp CTTTGGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTaGTGCTCCGCACGCTTCTGTAACCTCTCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: LWVAFRLSSGRP*CSARFCNLSLS
Trigger: GCTCAAGGAGAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp CCCGAGGGCACCAGATCTCCACGCTCCATGATGTCACGGATCAGTTaGCTTCTTTCTGACTCTGAGGTCAGTTCCTGGCGCAGGAGCTCA +
Preference number: 6 (lower is better)
Translates to: PEGTRSPRSMMSRIS*LLSDSEVSSWRRSS
Trigger: TGAGCTCCTGCGCCAGGAACTGACCTCAGAGTCAGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS TCA 72 bp GAACACATCAAGCCATTGAGCAGGCTCTCGAAAAGCTaGGGAATGTCCCTCCGGGCCAGGTACTCCTTGGCG +
Preference number: 6 (lower is better)
Translates to: EHIKPLSRLSKS*GMSLRARYSLA
Trigger: CGCCAAGGAGTACCTGGCCCGGAGGGACATTCCTCAGCTTTTCGAGAGCCTGCTCAATGGCTTGATGTGTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TTACCTTCCGTAGCTGTGTTTTCCTCTCGTAGTAGGTaGCGACGGGGATGGACGCTCGGTGGTAGGCCTCCA +
Preference number: 6 (lower is better)
Translates to: LPSVAVFSSRSR*RRGWTLGGRPP
Trigger: TGGAGGCCTACCACCGAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGAAAACACAGCTACGGAAGGTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TGTACTTCCGTAGCTGTGTTTTCCTCTCGTAGTAGGTaGCGACGGGGATGGACGCTCGGTGGTAGGCCTCCA +
Preference number: 6 (lower is better)
Translates to: CTSVAVFSSRSR*RRGWTLGGRPP
Trigger: TGGAGGCCTACCACCGAGCGTCCATCCCCGTCGTCACCTACTACGAGAGGAAAACACAGCTACGGAAGTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000200062.2
CDS CCA 72 bp GGGGCGGCATTCTGCTTGAAGTTCACTAGTCTCCTTTaGGTTGCTTTCAGGTTGTCATCTGGCCGCCCCTGC +
Preference number: 6 (lower is better)
Translates to: GAAFCLKFTSLL*VAFRLSSGRPC
Trigger: GCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp TCCGACAGGTCCGTGTCACTCTCTATGGAAAACTGGTaGATTGGAGGGAGCCGGTCATACCGCCGATATGGA +
Preference number: 6 (lower is better)
Translates to: SDRSVSLSMENW*IGGSRSYRRYG
Trigger: TCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp GTCTCCGACAGGTCCGTGTCACTCTCTATGGAAAACTaGTGGATTGGAGGGAGCCGGTCATACCGCCGATAT +
Preference number: 6 (lower is better)
Translates to: VSDRSVSLSMEN*WIGGSRSYRRY
Trigger: ATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp TTGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTaGTCATCTGGCCGCCCCTGCTGCTCCGCACGCTTC +
Preference number: 6 (lower is better)
Translates to: LKFTSLLWVAFR*SSGRPCCSARF
Trigger: GAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp GCATTCTGCTTGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTaGTCATCTGGCCGCCCCTGCTGCTCCGCACGCTTCTGTAACCTC +
Preference number: 6 (lower is better)
Translates to: AFCLKFTSLLWVAFR*SSGRPCCSARFCNL
Trigger: GAGGTTACAGAAGCGTGCGGAGCAGCAGGGGCGGCCAGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp CTTTGTTTGGAAACAGCTTGCTGTCGACGGCCACGCTaGTGTCATGGAACACTGCGTCTTCATCTCGGTCGG +
Preference number: 6 (lower is better)
Translates to: LCLETACCRRPR*CHGTLRLHLGR
Trigger: CCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp GAACGACACCCGAGGGCACCAGATCTCCACGCTCCATaGTGTCACGGATCAGTTTGCTTCTTTCTGACTCTG +
Preference number: 6 (lower is better)
Translates to: ERHPRAPDLHAP*CHGSVCFFLTL
Trigger: CAGAGTCAGAAAGAAGCAAACTGATCCGTGACATCATGGAGCGTGGAGATCTGGTGCCCTCGGGTGTCGTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS TCA 72 bp GCTTCTCTGAAGAAGGCGGTTAGTCATGGTGTCTGCTaGGCAGTCCATGCAGATCACCAAGTGTGGGTCTCC +
Preference number: 6 (lower is better)
Translates to: ASLKKAVSHGVC*AVHADHQVWVS
Trigger: GGAGACCCACACTTGGTGATCTGCATGGACTGCTCAGCAGACACCATGACTAACCGCCTTCTTCAGAGAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS GCA 72 bp CTTGCTGTCGACGGCCACGCTGATGTCATGGAACACTaGGTCTTCATCTCGGTCGGCATCAAAAGTCACGAT +
Preference number: 6 (lower is better)
Translates to: LAVDGHADVMEH*VFISVGIKSHD
Trigger: ATCGTGACTTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp GGAAACAGCTTGCTGTCGACGGCCACGCTGATGTCATaGAACACTGCGTCTTCATCTCGGTCGGCATCAAAA +
Preference number: 6 (lower is better)
Translates to: GNSLLSTATLMS*NTASSSRSASK
Trigger: TTTTGATGCCGACCGAGATGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp CAGGTCCGTGTCACTCTCTATGGAAAACTGGTGGATTaGAGGGAGCCGGTCATACCGCCGATATGGAAAGTT +
Preference number: 6 (lower is better)
Translates to: QVRVTLYGKLVD*REPVIPPIWKV
Trigger: AACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp CGGTCGGCATCAAAAGTCACGATGAGTCCCTTCTCTTaGAAGTACTTCACTAGTGGGGCGGCATTCTGCTTG +
Preference number: 6 (lower is better)
Translates to: RSASKVTMSPFS*KYFTSGAAFCL
Trigger: CAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACTCATCGTGACTTTTGATGCCGACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CCA 72 bp GTCAGTTCCTGGCGCAGGAGCTCACCAGTAGAGAGATaGGTGAAGCCATATTTTTCTGCCAGCTTCTCACAC +
Preference number: 6 (lower is better)
Translates to: VSSWRRSSPVER*VKPYFSASFSH
Trigger: GTGTGAGAAGCTGGCAGAAAAATATGGCTTCACCCATCTCTCTACTGGTGAGCTCCTGCGCCAGGAACTGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045262.11
ENSMUST00000200062.2
CDS CAA 72 bp ACAGGTCCGTGTCACTCTCTATGGAAAACTGGTGGATaGGAGGGAGCCGGTCATACCGCCGATATGGAAAGT +
Preference number: 6 (lower is better)
Translates to: TGPCHSLWKTGG*EGAGHTADMES
Trigger: ACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp CCGTCTCCGACAGGTCCGTGTCACTCTCTATGGAAAACTGGTGGATaGGAGGGAGCCGGTCATACCGCCGATATGGAAAGTTTGAATTTT +
Preference number: 6 (lower is better)
Translates to: PSPTGPCHSLWKTGG*EGAGHTADMESLNF
Trigger: AAAATTCAAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCAATCCACCAGTTTTCCATAGAGAGTGACACGGACCTGTCGGAGACGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp TCAAGGTCACTTGAATCCATCGGAGCCTCTTTGTTTGGAAACAGCTaGCTGTCGACGGCCACGCTGATGTCATGGAACACTGCGTCTTCA +
Preference number: 6 (lower is better)
Translates to: SRSLESIGASLFGNS*LSTATLMSWNTASS
Trigger: TGAAGACGCAGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCGATGGATTCAAGTGACCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp CTCCATTTAGGGGCGGTAACGTCTTCTTTTCCTGGCTaGCAAATGTGTCCCACTTCACCTTGTCACAGCCTC +
Preference number: 6 (lower is better)
Translates to: LHLGAVTSSFPG*QMCPTSPCHSL
Trigger: GAGGCTGTGACAAGGTGAAGTGGGACACATTTGTCAGCCAGGAAAAGAAGACGTTACCGCCCCTAAATGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp CTTGAATCCATCGGAGCCTCTTTGTTTGGAAACAGCTaGCTGTCGACGGCCACGCTGATGTCATGGAACACT +
Preference number: 6 (lower is better)
Translates to: LESIGASLFGNS*LSTATLMSWNT
Trigger: AGTGTTCCATGACATCAGCGTGGCCGTCGACAGCAAGCTGTTTCCAAACAAAGAGGCTCCGATGGATTCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp GGGTGCAGATCTGGTCCTCAAAAGACAGAGCCTGGGCAACATCCCTaGGGAATCCATCAATCACAATGCCTTCTTCATCGGGTATTTGCA +
Preference number: 6 (lower is better)
Translates to: GCRSGPQKTEPGQHP*GIHQSQCLLHRVFA
Trigger: TGCAAATACCCGATGAAGAAGGCATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGGCTCTGTCTTTTGAGGACCAGATCTGCACCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TGGAGGGAGCCGGTCATACCGCCGATATGGAAAGTTTaGATTTTCAGGCATGACATTTCGGAGGAAGGATCT +
Preference number: 6 (lower is better)
Translates to: WREPVIPPIWKV*IFRHDISEEGS
Trigger: AGATCCTTCCTCCGAAATGTCATGCCTGAAAATTCAAACTTTCCATATCGGCGGTATGACCGGCTCCCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp CTTGGAAGTACTTCACTAGTGGGGCGGCATTCTGCTTaGAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGT +
Preference number: 6 (lower is better)
Translates to: LGSTSLVGRHSA*SSLVSFGLLSG
Trigger: ACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp TCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTGCTaGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: SWKYFTSGAAFC*KFTSLLWVAFR
Trigger: CCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp AGTCCCTTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTGCTaGAAGTTCACTAGTCTCCTTTGGGTTGCTTTCAGGTTGTCATCT +
Preference number: 6 (lower is better)
Translates to: SPFSWKYFTSGAAFC*KFTSLLWVAFRLSS
Trigger: AGATGACAACCTGAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAAGGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 72 bp TTCTCTTGGAAGTACTTCACTAGTGGGGCGGCATTCTaGTTGAAGTTCACTAGTCTCCTTTGGGTTGCTTTC +
Preference number: 6 (lower is better)
Translates to: FSWKYFTSGAAF*LKFTSLLWVAF
Trigger: GAAAGCAACCCAAAGGAGACTAGTGAACTTCAAGCAGAATGCCGCCCCACTAGTGAAGTACTTCCAAGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp CTCCAGCATCAAACATCATGGAAGGGTCAAGGTCACTaGAATCCATCGGAGCCTCTTTGTTTGGAAACAGCT +
Preference number: 6 (lower is better)
Translates to: LQHQTSWKGQGH*NPSEPLCLETA
Trigger: AGCTGTTTCCAAACAAAGAGGCTCCGATGGATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 90 bp CTGACAAATGTGTCCCACTTCACCTTGTCACAGCCTCCTAGCTCCTaGACTTTCTGTAAACAAGTTTCCAAGTACTCTATGGGGTCTTCT +
Preference number: 6 (lower is better)
Translates to: LTNVSHFTLSQPPSS*TFCKQVSKYSMGSS
Trigger: AGAAGACCCCATAGAGTACTTGGAAACTTGTTTACAGAAAGTCAAGGAGCTAGGAGGCTGTGACAAGGTGAAGTGGGACACATTTGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TGTCCCACTTCACCTTGTCACAGCCTCCTAGCTCCTTaGCTTTCTGTAAACAAGTTTCCAAGTACTCTATGG +
Preference number: 6 (lower is better)
Translates to: CPTSPCHSLLAP*LSVNKFPSTLW
Trigger: CCATAGAGTACTTGGAAACTTGTTTACAGAAAGTCAAGGAGCTAGGAGGCTGTGACAAGGTGAAGTGGGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TACTGGAATCCATACCGCTCTGCAATTTTCAAACTCTaGGTACCCTTTCCACTTCCTGGACCACCTATGACA +
Preference number: 6 (lower is better)
Translates to: YWNPYRSAIFKL*VPFPLPGPPMT
Trigger: TGTCATAGGTGGTCCAGGAAGTGGAAAGGGTACTCAGAGTTTGAAAATTGCAGAGCGGTATGGATTCCAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS TCA 72 bp TCCAGCATCAAACATCATGGAAGGGTCAAGGTCACTTaGATCCATCGGAGCCTCTTTGTTTGGAAACAGCTT +
Preference number: 6 (lower is better)
Translates to: SSIKHHGRVKVT*IHRSLFVWKQL
Trigger: AAGCTGTTTCCAAACAAAGAGGCTCCGATGGATTCAAGTGACCTTGACCCTTCCATGATGTTTGATGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp GTGTCCCACTTCACCTTGTCACAGCCTCCTAGCTCCTaGACTTTCTGTAAACAAGTTTCCAAGTACTCTATG +
Preference number: 6 (lower is better)
Translates to: VSHFTLSQPPSS*TFCKQVSKYSM
Trigger: CATAGAGTACTTGGAAACTTGTTTACAGAAAGTCAAGGAGCTAGGAGGCTGTGACAAGGTGAAGTGGGACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp TTTCCACTTCCTGGACCACCTATGACAAGAATGATTTaGGGCCGAGGTCTAGTCGGGTCAAAAACCTCATAT +
Preference number: 6 (lower is better)
Translates to: FPLPGPPMTRMI*GRGLVGSKTSY
Trigger: ATATGAGGTTTTTGACCCGACTAGACCTCGGCCCAAAATCATTCTTGTCATAGGTGGTCCAGGAAGTGGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS GCA 72 bp CCTGGGCAACATCCCTTGGGAATCCATCAATCACAATaGCTTCTTCATCGGGTATTTGCATCAATTTTTGTT +
Preference number: 6 (lower is better)
Translates to: PGQHPLGIHQSQ*LLHRVFASIFV
Trigger: AACAAAAATTGATGCAAATACCCGATGAAGAAGGCATTGTGATTGATGGATTCCCAAGGGATGTTGCCCAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11
CDS CAA 72 bp TTGGTGATTATCTTGGCGATCAGACTCCATTTTCTGTaGCTGCTGGCACTGTGGATTTTCTTCCTCAATAAT +
Preference number: 6 (lower is better)
Translates to: LVIILAIRLHFL*LLALWIFFLNN
Trigger: ATTATTGAGGAAGAAAATCCACAGTGCCAGCAGCAACAGAAAATGGAGTCTGATCGCCAAGATAATCACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000045262.11