RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AJUBA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022178

Ensembl transcript IDs: ENSMUST00000054487.10

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTCTCTGGCCTTCGGGGCCTCCCCAGAGACCTCTTCACAAGGATTaGAGAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCAC +
Preference number: 1 (lower is better)
Translates to: GLWPSGPPQRPLHKD*RIHSLPPLAREFLH
Trigger: GTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAATCCTTGTGAAGAGGTCTCTGGGGAGGCCCCGAAGGCCAGAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CCA 90 bp GTCAACTCTCCCGGCAACCAGAAGGTTCCTCCTCCGCAGCCCATTTaGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCA +
Preference number: 1 (lower is better)
Translates to: VNSPGNQKVPPPQPI*NVRIFGSLAFGASP
Trigger: TGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTGCGGAGGAGGAACCTTCTGGTTGCCGGGAGAGTTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 90 bp GGGAGGGAGGTGCACAGGCACACGTGGCTACAATGTATCCACATATaGTGGGCTACAGGCTCAGTGCACTTAAACAGGGGGAGTGGGGCT +
Preference number: 1 (lower is better)
Translates to: GREVHRHTWLQCIHI*WATGSVHLNRGSGA
Trigger: AGCCCCACTCCCCCTGTTTAAGTGCACTGAGCCTGTAGCCCAGCATATGTGGATACATTGTAGCCACGTGTGCCTGTGCACCTCCCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CCA 90 bp TTCCTCCTCCGCAGCCCATTTGGAATGTTAGGATCTTTGGGTCTCTaGCCTTCGGGGCCTCCCCAGAGACCTCTTCACAAGGATTGCAGA +
Preference number: 1 (lower is better)
Translates to: FLLRSPFGMLGSLGL*PSGPPQRPLHKDCR
Trigger: TCTGCAATCCTTGTGAAGAGGTCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTGCGGAGGAGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CCA 90 bp TCACCTGAGAAAAGAGGAGTAGGGAGGGAGGTGCACAGGCACACGTaGCTACAATGTATCCACATATGCTGGGCTACAGGCTCAGTGCAC +
Preference number: 1 (lower is better)
Translates to: SPEKRGVGREVHRHT*LQCIHICWATGSVH
Trigger: GTGCACTGAGCCTGTAGCCCAGCATATGTGGATACATTGTAGCCACGTGTGCCTGTGCACCTCCCTCCCTACTCCTCTTTTCTCAGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR TCA 90 bp CATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCATGTaGTCCAGCACCAGAACATTGTGTGACGTATATAGAAACATACAC +
Preference number: 1 (lower is better)
Translates to: HRVQQTGGGFCDALM*SSTRTLCDVYRNIH
Trigger: GTGTATGTTTCTATATACGTCACACAATGTTCTGGTGCTGGATCACATGAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CAA 90 bp GGGTCTCTGGCCTTCGGGGCCTCCCCAGAGACCTCTTCACAAGGATaGCAGAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCA +
Preference number: 2 (lower is better)
Translates to: GSLAFGASPETSSQG*QNTLLASAGQRVSP
Trigger: TGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAATCCTTGTGAAGAGGTCTCTGGGGAGGCCCCGAAGGCCAGAGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR-3UTR CCA 90 bp GTTTCAGCCAAGCGGCTAGAACCAAGTCAACCTATTTTTCTTCTCTCCAGCTTCGGATCTTTGGGTCTCTaGCCTTCGGGGCCTCCCCAG +
Preference number: 2 (lower is better)
Translates to: VSAKRLEPSQPIFLLSSFGSLGL*PSGPPQ
Trigger: CTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCC...GAAGCTGGAGAGAAGAAAAATAGGTTGACTTGGTTCTAGCCGCTTGGCTGAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 72 bp CCTTCGGGGCCTCCCCAGAGACCTCTTCACAAGGATTaGAGAATACACTCCTTGCCTCCGCTGGCCAGAGAG +
Preference number: 3 (lower is better)
Translates to: PSGPPQRPLHKD*RIHSLPPLARE
Trigger: CTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAATCCTTGTGAAGAGGTCTCTGGGGAGGCCCCGAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 72 bp TCTGGCGTTCAGGAAGTACTGAAACCCGCCTGCGTGTaGTACATCCCATCTACTGTAGCACAGGCTGCACGC +
Preference number: 3 (lower is better)
Translates to: SGVQEVLKPACV*YIPSTVAQAAR
Trigger: GCGTGCAGCCTGTGCTACAGTAGATGGGATGTAGCACACGCAGGCGGGTTTCAGTACTTCCTGAACGCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CCA 72 bp CGCAGCCCATTTGGAATGTTAGGATCTTTGGGTCTCTaGCCTTCGGGGCCTCCCCAGAGACCTCTTCACAAG +
Preference number: 3 (lower is better)
Translates to: RSPFGMLGSLGL*PSGPPQRPLHK
Trigger: CTTGTGAAGAGGTCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 72 bp GTGCACAGGCACACGTGGCTACAATGTATCCACATATaGTGGGCTACAGGCTCAGTGCACTTAAACAGGGGG +
Preference number: 3 (lower is better)
Translates to: VHRHTWLQCIHI*WATGSVHLNRG
Trigger: CCCCCTGTTTAAGTGCACTGAGCCTGTAGCCCAGCATATGTGGATACATTGTAGCCACGTGTGCCTGTGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR TCA 72 bp CTACATCCCATCTACTGTAGCACAGGCTGCACGCAATaGACACCAGTCAACTCTCCCGGCAACCAGAAGGTT +
Preference number: 3 (lower is better)
Translates to: LHPIYCSTGCTQ*TPVNSPGNQKV
Trigger: AACCTTCTGGTTGCCGGGAGAGTTGACTGGTGTTCATTGCGTGCAGCCTGTGCTACAGTAGATGGGATGTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 72 bp AGAGACCTCTTCACAAGGATTGCAGAATACACTCCTTaGCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTG +
Preference number: 3 (lower is better)
Translates to: RDLFTRIAEYTP*LRWPESFSTVV
Trigger: CACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAATCCTTGTGAAGAGGTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CCA 72 bp TTTTCTTCTCTCCAGCTTCCCCAATGCCTTGAGTGGTaGGGTTGTAACAGGTCAGATCCAATGCAGGATCCC +
Preference number: 3 (lower is better)
Translates to: FSSLQLPQCLEW*GCNRSDPMQDP
Trigger: GGGATCCTGCATTGGATCTGACCTGTTACAACCCCACCACTCAAGGCATTGGGGAAGCTGGAGAGAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR TCA 72 bp CAACAGACTGGGGGTGGTTTCTGTGATGCCCTCATGTaGTCCAGCACCAGAACATTGTGTGACGTATATAGA +
Preference number: 3 (lower is better)
Translates to: QQTGGGFCDALM*SSTRTLCDVYR
Trigger: TCTATATACGTCACACAATGTTCTGGTGCTGGATCACATGAGGGCATCACAGAAACCACCCCCAGTCTGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR GCA 72 bp CATCCTACTCACCGGCAAGTTTCACATCCAGAAACCTaGTCATTTCTTCCCCCAGAAGAGCAAAACAGCAAC +
Preference number: 3 (lower is better)
Translates to: HPTHRQVSHPET*SFLPPEEQNSN
Trigger: GTTGCTGTTTTGCTCTTCTGGGGGAAGAAATGAGCAGGTTTCTGGATGTGAAACTTGCCGGTGAGTAGGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR TCA 72 bp GGAAAAATACATTATAATCTGGCGTTCAGGAAGTACTaGAACCCGCCTGCGTGTGCTACATCCCATCTACTG +
Preference number: 3 (lower is better)
Translates to: GKIHYNLAFRKY*NPPACATSHLL
Trigger: CAGTAGATGGGATGTAGCACACGCAGGCGGGTTTCAGTACTTCCTGAACGCCAGATTATAATGTATTTTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR TCA 72 bp ACCCTGTCTCGAAAAACCAAAAACCAAACAAACCTCTaGCATACTCTTGATGAACAGGCAGGAATCACTGAA +
Preference number: 3 (lower is better)
Translates to: TLSRKTKNQTNL*HTLDEQAGITE
Trigger: TTCAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTTGGTTTTTGGTTTTTCGAGACAGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCTACCTCCGGCTCCGCTaGCCCCGGCTCCGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALYLRLR*PRLRPA
Trigger: TGCTGGACGGAGCCGGGGCCAGCGGAGCCGGAGGTA...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp CAGCCCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGGTCGTAGCCCATGCTaGTGCCGCTGGTCCGATTGC +
Preference number: 4 (lower is better)
Translates to: QPIWNVRIFGSLAFGASPGRSPC*CRWSDC
Trigger: GCAATCGGACCAGCGGCATCAGCATGGGCTACGACC...TGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp AATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGGTCCTCACAGCCCTCTaGGGGGAGGATGGGTTGTCC +
Preference number: 4 (lower is better)
Translates to: NTLLASAGQRVSPQWWWQVLTAL*GEDGLS
Trigger: GGACAACCCATCCTCCCCTCAGAGGGCTGTGAGGAC...CTGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp ATTGCAGAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGCGCTGGCCGAGCTACTaGCGAAGCTGGAGCGAGGGC +
Preference number: 4 (lower is better)
Translates to: IAEYTPCLRWPESFSTVVRWPSY*RSWSEG
Trigger: GCCCTCGCTCCAGCTTCGCCAGTAGCTCGGCCAGCG...CACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp CAGCCCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGCTTGCTCGCATCGCTaGCCGAGCTACTGGCGAAGC +
Preference number: 4 (lower is better)
Translates to: QPIWNVRIFGSLAFGASPACSHR*PSYWRS
Trigger: GCTTCGCCAGTAGCTCGGCCAGCGATGCGAGCAAGC...TGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCGCCCCGGGGGCTAGATaGCTTGCTCGCATCGCTGGC +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALAPGAR*LARIAG
Trigger: GCCAGCGATGCGAGCAAGCCATCTAGCCCCCGGGGC...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp AATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGAGGCTGTCCAGGGCCTaGCAGGCATTGCTCTGCCCA +
Preference number: 4 (lower is better)
Translates to: NTLLASAGQRVSPQWWWQRLSRA*QALLCP
Trigger: TGGGCAGAGCAATGCCTGCCAGGCCCTGGACAGCCT...CTGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp GAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCACTGAGGCGCTGCATGTaGCAGCCGTGGCAGAGCAAA +
Preference number: 4 (lower is better)
Translates to: EYTPCLRWPESFSTVVVALRRCM*QPWQSK
Trigger: TTTGCTCTGCCACGGCTGTCACATGCAGCGCCTCAG...TGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCTGCCGCTGGTCCGATTaGTGCACGGCCGGCTACCTC +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALCRWSD*CTAGYL
Trigger: GAGGTAGCCGGCCGTGCAGCAATCGGACCAGCGGCA...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCTGGAGAAGTCCACAGTaGAGGGGACGCCGTCCAGGC +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALWRSPQ*RGRRPG
Trigger: GCCTGGACGGCGTCCCCTTCACTGTGGACTTCTCCA...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCTTCAAAGGAGCCGCGTaGGTTCCGCTCGGCGTCCAG +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALFKGAA*VPLGVQ
Trigger: CTGGACGCCGAGCGGAACGCACGCGGCTCCTTTGAA...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp CCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGAGAGAGTGTCGTCCGGGTTaGGCCCCACGTCTCTCCAAA +
Preference number: 4 (lower is better)
Translates to: PFGMLGSLGLWPSGPPQRECRPG*APRLSK
Trigger: TTTGGAGAGACGTGGGGCGCAACCCGGACGACACTC...TCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp TCCCAGCAGACAGACACGGGGAGCTCTCTAGTCCTTAGGGAGAGAGCCAAGAAAGGGGCCCTTGCTCCCTaGCCGGTTCCAAAGGTTCAT +
Preference number: 4 (lower is better)
Translates to: SQQTDTGSSLVLRERAKKGALAP*PVPKVH
Trigger: ATGAACCTTTGGAACCGGCCAGGGAGCAAGGGCCCC...TTTCTTGGCTCTCTCCCTAAGGACTAGAGAGCTCCCCGTGTCTGTCTGCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCCCTCTGAGGGGAGGATaGGTTGTCCGCAGGCTGCAC +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALPLRGG*VVRRLH
Trigger: GTGCAGCCTGCGGACAACCCATCCTCCCCTCAGAGG...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CAA 72 bp TTCCTCCTCCGCAGCCCATTTGGAATGTTAGGATCTTaGGGTCTCTGGCCTTCGGGGCCTCCCCAGAGACCT +
Preference number: 4 (lower is better)
Translates to: FLLRSPFGMLGS*GLWPSGPPQRP
Trigger: AGGTCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTGCGGAGGAGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp CAGCCCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCACGCTGTAGAAAGCCTTaGACCGCAAAGTTCGTCCAC +
Preference number: 4 (lower is better)
Translates to: QPIWNVRIFGSLAFGASPRCRKP*TAKFVH
Trigger: GTGGACGAACTTTGCGGTGCAAGGCTTTCTACAGCG...TGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp AATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGCAAAGTAATCTTCTCTaGCCTCTGGCTCCCGTATCC +
Preference number: 4 (lower is better)
Translates to: NTLLASAGQRVSPQWWWQQSNLL*PLAPVS
Trigger: GGATACGGGAGCCAGAGGCCAGAGAAGATTACTTTG...CTGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp GAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGACTTCCCCATGGCCTaGAGGATCTTCTCTAGAATC +
Preference number: 4 (lower is better)
Translates to: EYTPCLRWPESFSTVVVADFPMA*RIFSRI
Trigger: GATTCTAGAGAAGATCCTCCAGGCCATGGGGAAGTC...TGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp AATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGGATAGGACTTCCCCATaGCCTGGAGGATCTTCTCTA +
Preference number: 4 (lower is better)
Translates to: NTLLASAGQRVSPQWWWQDRTSP*PGGSSL
Trigger: TAGAGAAGATCCTCCAGGCCATGGGGAAGTCCTATC...CTGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp CCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGAGAAGTAGACAGAGCCATTaGCGCTGTAGAAAGCCTTGC +
Preference number: 4 (lower is better)
Translates to: PFGMLGSLGLWPSGPPQRSRQSH*RCRKPC
Trigger: GCAAGGCTTTCTACAGCGTCAATGGCTCTGTCTACT...TCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp AAACAAACCTCTGACATACTCTTGATGAACAGGCAGGAATCACTGAATGCTCAGCGCTGGTCCGATTGCTaGACGGCCGGCTACCTCCGG +
Preference number: 4 (lower is better)
Translates to: KQTSDILLMNRQESLNAQRWSDC*TAGYLR
Trigger: CCGGAGGTAGCCGGCCGTGCAGCAATCGGACCAGCG...CTGAGCATTCAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp GAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCATTCTCTAGAATCAAGTaGCCGCAGACACAGCACTTC +
Preference number: 4 (lower is better)
Translates to: EYTPCLRWPESFSTVVVAFSRIK*PQTQHF
Trigger: GAAGTGCTGTGTCTGCGGCCACTTGATTCTAGAGAA...TGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CAA 72 bp CAGAGACCTCTTCACAAGGATTGCAGAATACACTCCTaGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGT +
Preference number: 4 (lower is better)
Translates to: QRPLHKDCRIHS*PPLAREFLHSG
Trigger: ACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAATCCTTGTGAAGAGGTCTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp ACTGACTCCATGCATAGGGTACAACAGACTGGGGGTGGTTTCTGTGATGCCCTCTGCCTCCTGAAACCCTaGAAACAGATAGTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: TDSMHRVQQTGGGFCDALCLLKP*KQIVFL
Trigger: GAGGAAGACTATCTGTTTTCAGGGTTTCAGGAGGCA...GAGGGCATCACAGAAACCACCCCCAGTCTGTTGTACCCTATGCATGGAGTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp GTTTCAGCCAAGCGGCTAGAACCAAGTCAACCTATTTTTCTTCTCTCCAGCTTCCGTCACTCAGCTGCATaGGGCAGTCCTCACAGTGGT +
Preference number: 4 (lower is better)
Translates to: VSAKRLEPSQPIFLLSSFRHSAA*GSPHSG
Trigger: ACCACTGTGAGGACTGCCGCATGCAGCTGAGTGACG...GAAGCTGGAGAGAAGAAAAATAGGTTGACTTGGTTCTAGCCGCTTGGCTGAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp CCAAAAACCAAACAAACCTCTGACATACTCTTGATGAACAGGCAGGAATCACTGGACCCTTCGAAGCGCTaGGCTTCAAAGGAGCCGCGT +
Preference number: 4 (lower is better)
Translates to: PKTKQTSDILLMNRQESLDPSKR*ASKEPR
Trigger: ACGCGGCTCCTTTGAAGCGCAGCGCTTCGAAGGGTC...CAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTTGGTTTTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp CCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGAGAGATAATCACGGTCCATaGATATCACCCTCACAATGT +
Preference number: 4 (lower is better)
Translates to: PFGMLGSLGLWPSGPPQRDNHGP*ISPSQC
Trigger: ACATTGTGAGGGTGATATCCATGGACCGTGATTATC...TCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR GCA 90 bp AAACAAACCTCTGACATACTCTTGATGAACAGGCAGGAATCACTGAATGCTCAGGGGCCTGGCAGGCATTaGTCTGCCCATAGATACCTT +
Preference number: 4 (lower is better)
Translates to: KQTSDILLMNRQESLNAQGPGRH*SAHRYL
Trigger: AAGGTATCTATGGGCAGAGCAATGCCTGCCAGGCCC...CTGAGCATTCAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CCA 90 bp CCAAAAACCAAACAAACCTCTGACATACTCTTGATGAACAGGCAGGAATCACTGGTAACACAGTACACCTaGTTGGAGAAGTCCACAGTG +
Preference number: 4 (lower is better)
Translates to: PKTKQTSDILLMNRQESLVTQYT*LEKSTV
Trigger: CACTGTGGACTTCTCCAACCAGGTGTACTGTGTTAC...CAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTTGGTTTTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR TCA 90 bp GTTTCAGCCAAGCGGCTAGAACCAAGTCAACCTATTTTTCTTCTCTCCAGCTTCTACCTTTGTTGCACTTaGTACAGGTGCCAAAGTAAT +
Preference number: 4 (lower is better)
Translates to: VSAKRLEPSQPIFLLSSFYLCCT*YRCQSN
Trigger: ATTACTTTGGCACCTGTATCAAGTGCAACAAAGGTA...GAAGCTGGAGAGAAGAAAAATAGGTTGACTTGGTTCTAGCCGCTTGGCTGAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
3UTR CAA 72 bp GAAAAACCAAAAACCAAACAAACCTCTGACATACTCTaGATGAACAGGCAGGAATCACTGAATGCTCAGTGC +
Preference number: 4 (lower is better)
Translates to: EKPKTKQTSDIL*MNRQESLNAQC
Trigger: GCACTGAGCATTCAGTGATTCCTGCCTGTTCATCAAGAGTATGTCAGAGGTTTGTTTGGTTTTTGGTTTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 90 bp CCGGGTAGGCGGACGGAGCCCCTCCAGGGTAGCCCGCAGGAGCAGTaGTCAGCGGGAGGCCGAATAGGCACGGCCCCGCGGGCAGCGGGC +
Preference number: 5 (lower is better)
Translates to: PGRRTEPLQGSPQEQ*SAGGRIGTAPRAAG
Trigger: GCCCGCTGCCCGCGGGGCCGTGCCTATTCGGCCTCCCGCTGACCACTGCTCCTGCGGGCTACCCTGGAGGGGCTCCGTCCGCCTACCCGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 90 bp CCCGGGAAAGGACCCTTCGAAGCGCTGCGCTTCAAAGGAGCCGCGTaGGTTCCGCTCGGCGTCCAGGGGCCCTTGCTCCCTGGCCGGTTC +
Preference number: 5 (lower is better)
Translates to: PGKGPFEALRFKGAA*VPLGVQGPLLPGRF
Trigger: GAACCGGCCAGGGAGCAAGGGCCCCTGGACGCCGAGCGGAACGCACGCGGCTCCTTTGAAGCGCAGCGCTTCGAAGGGTCCTTTCCCGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 90 bp CTCCGGGGGTCCCATCAGACCCAGACCGGCTCGCTTCGCCCTTTCTaGGGCCGAACTTGGCGCTGCCGGAGTCCGAGAGTCTCAACTTTT +
Preference number: 5 (lower is better)
Translates to: LRGSHQTQTGSLRPF*GRTWRCRSPRVSTF
Trigger: AAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGTCTGATGGGACCCCCGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 90 bp ACCCAGACCGGCTCGCTTCGCCCTTTCTGCGGCCGAACTTGGCGCTaGCGGAGTCCGAGAGTCTCAACTTTTCTAGCAGACGACTGGCTT +
Preference number: 5 (lower is better)
Translates to: TQTGSLRPFCGRTWR*RSPRVSTFLADDWL
Trigger: AAGCCAGTCGTCTGCTAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 90 bp CATCAGACCCAGACCGGCTCGCTTCGCCCTTTCTGCGGCCGAACTTaGCGCTGCCGGAGTCCGAGAGTCTCAACTTTTCTAGCAGACGAC +
Preference number: 5 (lower is better)
Translates to: HQTQTGSLRPFCGRT*RCRSPRVSTFLADD
Trigger: GTCGTCTGCTAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGTCTGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp CCATTTGGAATGTTAGGATCTTTGGGTCTCTGGCCTTCGGGGCCTCCCCAGAGACCGCTTAAGCGTCCCTaGCCTGCTCCGGGGGTCCCA +
Preference number: 5 (lower is better)
Translates to: PFGMLGSLGLWPSGPPQRPLKRP*PAPGVP
Trigger: TGGGACCCCCGGAGCAGGCAAGGGACGCTTAAGCGG...TCTCTGGGGAGGCCCCGAAGGCCAGAGACCCAAAGATCCTAACATTCCAAATGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp TCCCAGCAGACAGACACGGGGAGCTCTCTAGTCCTTAGGGAGAGAGCCAAGAAACGGGGGCTAGATGGCTaGCTCGCATCGCTGGCCGAG +
Preference number: 5 (lower is better)
Translates to: SQQTDTGSSLVLRERAKKRGLDG*LASLAE
Trigger: CTCGGCCAGCGATGCGAGCAAGCCATCTAGCCCCCG...TTTCTTGGCTCTCTCCCTAAGGACTAGAGAGCTCCCCGTGTCTGTCTGCTGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp TCCCAGCAGACAGACACGGGGAGCTCTCTAGTCCTTAGGGAGAGAGCCAAGAAACGAGTGTCGTCCGGGTaGCGCCCCACGTCTCTCCAA +
Preference number: 5 (lower is better)
Translates to: SQQTDTGSSLVLRERAKKRVSSG*RPTSLQ
Trigger: TTGGAGAGACGTGGGGCGCAACCCGGACGACACTCG...TTTCTTGGCTCTCTCCCTAAGGACTAGAGAGCTCCCCGTGTCTGTCTGCTGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS TCA 90 bp ACAGGTGCCAAAGTAATCTTCTCTGGCCTCTGGCTCCCGTATCCGTaGTCGGGAGGCCTCTGGAACGAAGGGACCAGGAGACTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: TGAKVIFSGLWLPYP*SGGLWNEGTRRLLQ
Trigger: CTGGAGGAGTCTCCTGGTCCCTTCGTTCCAGAGGCCTCCCGATCACGGATACGGGAGCCAGAGGCCAGAGAAGATTACTTTGGCACCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp ATTGCAGAATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGATGCCGCTGGTCCGATaGCTGCACGGCCGGCTACCT +
Preference number: 5 (lower is better)
Translates to: IAEYTPCLRWPESFSTVVMPLVR*LHGRLP
Trigger: AGGTAGCCGGCCGTGCAGCAATCGGACCAGCGGCAT...CACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATTCTGCAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp GTTTCAGCCAAGCGGCTAGAACCAAGTCAACCTATTTTTCTTCTCTCCAGCTTCGGCGTCCAGGGGCCCTaGCTCCCTGGCCGGTTCCAA +
Preference number: 5 (lower is better)
Translates to: VSAKRLEPSQPIFLLSSFGVQGP*LPGRFQ
Trigger: TTGGAACCGGCCAGGGAGCAAGGGCCCCTGGACGCC...GAAGCTGGAGAGAAGAAAAATAGGTTGACTTGGTTCTAGCCGCTTGGCTGAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS-3UTR CAA 90 bp AATACACTCCTTGCCTCCGCTGGCCAGAGAGTTTCTCCACAGTGGTGGTGGCAGACACAGTACACCTGGTaGGAGAAGTCCACAGTGAAG +
Preference number: 5 (lower is better)
Translates to: NTLLASAGQRVSPQWWWQTQYTW*EKSTVK
Trigger: CTTCACTGTGGACTTCTCCAACCAGGTGTACTGTGT...CTGCCACCACCACTGTGGAGAAACTCTCTGGCCAGCGGAGGCAAGGAGTGTATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS TCA 90 bp GAAACCCTGAAAACAGATAGTCTTCCTCACAGTAGACAGAGCCATTaGCGCTGTAGAAAGCCTTGCACCGCAAAGTTCGTCCACAGGAGC +
Preference number: 5 (lower is better)
Translates to: ETLKTDSLPHSRQSH*RCRKPCTAKFVHRS
Trigger: GCTCCTGTGGACGAACTTTGCGGTGCAAGGCTTTCTACAGCGTCAATGGCTCTGTCTACTGTGAGGAAGACTATCTGTTTTCAGGGTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 72 bp CGGACGGAGCCCCTCCAGGGTAGCCCGCAGGAGCAGTaGTCAGCGGGAGGCCGAATAGGCACGGCCCCGCGG +
Preference number: 6 (lower is better)
Translates to: RTEPLQGSPQEQ*SAGGRIGTAPR
Trigger: CCGCGGGGCCGTGCCTATTCGGCCTCCCGCTGACCACTGCTCCTGCGGGCTACCCTGGAGGGGCTCCGTCCG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 72 bp GGACCCTTCGAAGCGCTGCGCTTCAAAGGAGCCGCGTaGGTTCCGCTCGGCGTCCAGGGGCCCTTGCTCCCT +
Preference number: 6 (lower is better)
Translates to: GPFEALRFKGAA*VPLGVQGPLLP
Trigger: AGGGAGCAAGGGCCCCTGGACGCCGAGCGGAACGCACGCGGCTCCTTTGAAGCGCAGCGCTTCGAAGGGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 72 bp GGCTCCGTCCAGCAGCAGGCTGCCCCGGGGGCTAGATaGCTTGCTCGCATCGCTGGCCGAGCTACTGGCGAA +
Preference number: 6 (lower is better)
Translates to: GSVQQQAAPGAR*LARIAGRATGE
Trigger: TTCGCCAGTAGCTCGGCCAGCGATGCGAGCAAGCCATCTAGCCCCCGGGGCAGCCTGCTGCTGGACGGAGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CAA 72 bp CCGTCCAGCAGCAGGCTGCCCCGGGGGCTAGATGGCTaGCTCGCATCGCTGGCCGAGCTACTGGCGAAGCTG +
Preference number: 6 (lower is better)
Translates to: PSSSRLPRGLDG*LASLAELLAKL
Trigger: CAGCTTCGCCAGTAGCTCGGCCAGCGATGCGAGCAAGCCATCTAGCCCCCGGGGCAGCCTGCTGCTGGACGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 72 bp TCCCATCAGACCCAGACCGGCTCGCTTCGCCCTTTCTaGGGCCGAACTTGGCGCTGCCGGAGTCCGAGAGTC +
Preference number: 6 (lower is better)
Translates to: SHQTQTGSLRPF*GRTWRCRSPRV
Trigger: GACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGTCTGATGGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CAA 72 bp GCAGTCCCCGTAGCCTGTAACCGAGTGTCGTCCGGGTaGCGCCCCACGTCTCTCCAAAGGACCCGCTGTTCC +
Preference number: 6 (lower is better)
Translates to: AVPVACNRVSSG*RPTSLQRTRCS
Trigger: GGAACAGCGGGTCCTTTGGAGAGACGTGGGGCGCAACCCGGACGACACTCGGTTACAGGCTACGGGGACTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CAA 72 bp CCAGACCGGCTCGCTTCGCCCTTTCTGCGGCCGAACTaGGCGCTGCCGGAGTCCGAGAGTCTCAACTTTTCT +
Preference number: 6 (lower is better)
Translates to: PDRLASPFLRPN*ALPESESLNFS
Trigger: AGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CAA 90 bp CCATCAGACCCAGACCGGCTCGCTTCGCCCTTTCTGCGGCCGAACTaGGCGCTGCCGGAGTCCGAGAGTCTCAACTTTTCTAGCAGACGA +
Preference number: 6 (lower is better)
Translates to: PSDPDRLASPFLRPN*ALPESESLNFSSRR
Trigger: TCGTCTGCTAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTGGGTCTGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS TCA 72 bp TTGGTAGAGGGCTGCCGGGCACTGAGGCGCTGCATGTaGCAGCCGTGGCAGAGCAAATGTCCATCAAGAGGG +
Preference number: 6 (lower is better)
Translates to: LVEGCRALRRCM*QPWQSKCPSRG
Trigger: CCCTCTTGATGGACATTTGCTCTGCCACGGCTGTCACATGCAGCGCCTCAGTGCCCGGCAGCCCTCTACCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS GCA 72 bp GGCTCGCTTCGCCCTTTCTGCGGCCGAACTTGGCGCTaGCGGAGTCCGAGAGTCTCAACTTTTCTAGCAGAC +
Preference number: 6 (lower is better)
Translates to: GSLRPFCGRTWR*RSPRVSTFLAD
Trigger: GTCTGCTAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 72 bp CAGACCGGCTCGCTTCGCCCTTTCTGCGGCCGAACTTaGCGCTGCCGGAGTCCGAGAGTCTCAACTTTTCTA +
Preference number: 6 (lower is better)
Translates to: QTGSLRPFCGRT*RCRSPRVSTFL
Trigger: TAGAAAAGTTGAGACTCTCGGACTCCGGCAGCGCCAAGTTCGGCCGCAGAAAGGGCGAAGCGAGCCGGTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS TCA 72 bp AAAGTAATCTTCTCTGGCCTCTGGCTCCCGTATCCGTaGTCGGGAGGCCTCTGGAACGAAGGGACCAGGAGA +
Preference number: 6 (lower is better)
Translates to: KVIFSGLWLPYP*SGGLWNEGTRR
Trigger: TCTCCTGGTCCCTTCGTTCCAGAGGCCTCCCGATCACGGATACGGGAGCCAGAGGCCAGAGAAGATTACTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS CCA 72 bp CACAGTGGTAGCACTCAAAGTGATAATCACGGTCCATaGATATCACCCTCACAATGTCCTCACAGCCCTCTG +
Preference number: 6 (lower is better)
Translates to: HSGSTQSDNHGP*ISPSQCPHSPL
Trigger: CAGAGGGCTGTGAGGACATTGTGAGGGTGATATCCATGGACCGTGATTATCACTTTGAGTGCTACCACTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10
CDS TCA 72 bp AGGCATTGCTCTGCCCATAGATACCTTTGTTGCACTTaGTACAGGTGCCAAAGTAATCTTCTCTGGCCTCTG +
Preference number: 6 (lower is better)
Translates to: RHCSAHRYLCCT*YRCQSNLLWPL
Trigger: CAGAGGCCAGAGAAGATTACTTTGGCACCTGTATCAAGTGCAACAAAGGTATCTATGGGCAGAGCAATGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000054487.10