Pregenerated sensors for AIMP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028029Ensembl transcript IDs: ENSMUST00000029663.11, ENSMUST00000197793.5, ENSMUST00000198513.6
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGACCGTGCGCGGGGCTaGTTCTCCCACATCTACTTC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHDRARG*FSHIYF Trigger: GAAGTAGATGTGGGAGAAGCAGCCCCGCGCACGGTC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR TCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGGCGGTGGTTGCTACTaGTGGAGACTGCACCACACT | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHGGGCY*WRLHHT Trigger: AGTGTGGTGCAGTCTCCATCAGTAGCAACCACCGCC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGATCTGATCCGCCTCTaGACCCTTCTGCTCCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHDLIRL*TLLLQP Trigger: AGGCTGGAGCAGAAGGGTGCAGAGGCGGATCAGATC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR TCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCACATCACCATGGCTTaGGACAGAACTCCCCGCATC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHHITMA*DRTPRI Trigger: GATGCGGGGAGTTCTGTCTCAAGCCATGGTGATGTG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGGAGTCAGTACTTGCTaGTGCCGACTGCTGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHGVSTC*CRLLLL Trigger: GAGAAGCAGCAGTCGGCAGCAGCAAGTACTGACTCC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCACTCAGCATTGGTGTaGAGGTCAGGCTGGATCTGC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHHSALV*RSGWIC Trigger: GCAGATCCAGCCTGACCTGCACACCAATGCTGAGTG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGTGTGCAGGTCAGGCTaGATCTGCTCCCAGATCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHVCRSG*ICSQIF Trigger: GAAGATCTGGGAGCAGATCCAGCCTGACCTGCACAC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCCACACACTCAGCATTaGTGTGCAGGTCAGGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHPHTQH*CAGQAG Trigger: TCCAGCCTGACCTGCACACCAATGCTGAGTGTGTGG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCCATGGTTTGGGCTCTaGAAACTCCCTTCCCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHPWFGL*KLPSPS Trigger: TGAAGGGGAAGGGAGTTTGCAGAGCCCAAACCATGG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTGGCACACATCACCATaGCTTGAGACAGAACTCCCC | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHWHTSP*LETELP Trigger: GGGGAGTTCTGTCTCAAGCCATGGTGATGTGTGCCA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR TCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACAGATATTCGATGATCTaGTCCGCCTCTGCACCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHRYSMI*SASAPF Trigger: GAAGGGTGCAGAGGCGGATCAGATCATCGAATATCT...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCTTGCTGCTGCCGACTaGTGCTTCTCCTTTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHLAAAD*CFSFFS Trigger: AGAGAAAAAGGAGAAGCAGCAGTCGGCAGCAGCAAG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR TCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTGCTCCACTCCGTTATaGATTTCTGCCAGAATCAGC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHCSTPL*ISARIS Trigger: GCTGATTCTGGCAGAAATTCATAACGGAGTGGAGCA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR TCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTTCCTCCACATACAGTaGATCTGCATCAGGGTGCTT | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHFLHIQ*ICIRVL Trigger: AAGCACCCTGATGCAGATTCACTGTATGTGGAGGAA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGCTACTGATGGAGACTaGACCACACTTTCAGAAGCA | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHATDGD*TTLSEA Trigger: TGCTTCTGAAAGTGTGGTGCAGTCTCCATCAGTAGC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACAACTCCCCGCATCTTTaGAGGCTTCAGATTACAGAG | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHNSPHL*RLQITE Trigger: CTCTGTAATCTGAAGCCTGCAAAGATGCGGGGAGTT...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGCCAGAATCAGCTCTTaGTTTAGCTCTTCTATTTCT | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHARISS*FSSSIS Trigger: AGAAATAGAAGAGCTAAAGCAAGAGCTGATTCTGGC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTCCGTTATGAATTTCTaGCAGAATCAGCTCTTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHSVMNF*QNQLLL Trigger: AAGCAAGAGCTGATTCTGGCAGAAATTCATAACGGA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTCTCTCATTGTTGCCTaGAAAATTGCTTTCTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHSLIVA*KIAFSL Trigger: TAAGGAGAAAGCAATTTTGCAGGCAACAATGAGAGA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR GCA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTTCTTCTCTCATTGTTaGCTGCAAAATTGCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHFFSHC*LQNCFL Trigger: GAGAAAGCAATTTTGCAGGCAACAATGAGAGAAGAA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS TCA 90 bp | AGGAACGGACCCGTTGGGAGGGGCCAGAATCTCCACTTTCTCTGGTaGACTGGCACACATCACCATGGCTTGAGACAGAACTCCCCGCAT | + |
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Preference number: 5 (lower is better) Translates to: RNGPVGRGQNLHFLW*TGTHHHGLRQNSPH Trigger: ATGCGGGGAGTTCTGTCTCAAGCCATGGTGATGTGTGCCAGTTCACCAGAGAAAGTGGAGATTCTGGCCCCTCCCAACGGGTCCGTTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS TCA 90 bp | CGCTTTGATCTGCTCTTTTGTAGCAGGAGAGGCGGTGGTTGCTACTaGTGGAGACTGCACCACACTTTCAGAAGCAGTACAGTTCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: RFDLLFCSRRGGGCY*WRLHHTFRSSTVRL Trigger: CAGACGAACTGTACTGCTTCTGAAAGTGTGGTGCAGTCTCCATCAGTAGCAACCACCGCCTCTCCTGCTACAAAAGAGCAGATCAAAGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS GCA 90 bp | CTTCTTGGCAGTAACAATACAACCAATTCGAAGATCCAGACGCGATaGGTCGATAGGCTTGGAGTCAGTACTTGCTGCTGCCGACTGCTG | + |
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Preference number: 5 (lower is better) Translates to: LLGSNNTTNSKIQTR*VDRLGVSTCCCRLL Trigger: CAGCAGTCGGCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGTCTGGATCTTCGAATTGGTTGTATTGTTACTGCCAAGAAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACCCAGGAACGGACCCGTaGGGAGGGGCCAGAATCTCC | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHPGTDP*GGARIS Trigger: GGAGATTCTGGCCCCTCCCAACGGGTCCGTTCCTGG...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGCCACACACTCAGCATaGGTGTGCAGGTCAGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHATHSA*VCRSGW Trigger: CCAGCCTGACCTGCACACCAATGCTGAGTGTGTGGC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACACACATCACCATGGCTaGAGACAGAACTCCCCGCAT | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHTHHHG*RQNSPH Trigger: ATGCGGGGAGTTCTGTCTCAAGCCATGGTGATGTGT...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGAACTCCCCGCATCTTaGCAGGCTTCAGATTACAGA | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHELPAS*QASDYR Trigger: TCTGTAATCTGAAGCCTGCAAAGATGCGGGGAGTTC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACACTATTGGCCATGGTTaGGGCTCTGCAAACTCCCTT | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHTIGHG*GSANSL Trigger: AAGGGAGTTTGCAGAGCCCAAACCATGGCCAATAGT...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACGAACAGCATCATTCGTaGCCATCTTTCCCCAGAATC | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHEQHHS*PSFPRI Trigger: GATTCTGGGGAAAGATGGCAACGAATGATGCTGTTC...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029663.11 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTTAGGGTTTAGCTCCTaGTCAGGCTCTCCAGGAAAA | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHLGFSS*SGSPGK Trigger: TTTTCCTGGAGAGCCTGACAAGGAGCTAAACCCTAA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTATTTAATTCCACTATaGGCCATGGTTTGGGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHYLIPL*AMVWAL Trigger: CAGAGCCCAAACCATGGCCAATAGTGGAATTAAATA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS-3UTR CAA 90 bp | CACTTCTCTTTATTGTTATTAAGTTTTCGCCAATGTCTTTCAGTTACAGAGCACTTTCTTCTCTCATTGTaGCCTGCAAAATTGCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: HFSLLLLSFRQCLSVTEHFLLSL*PAKLLS Trigger: AGAAAGCAATTTTGCAGGCAACAATGAGAGAAGAAA...GTGCTCTGTAACTGAAAGACATTGGCGAAAACTTAATAACAATAAAGAGAAGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS TCA 72 bp | ACCACCATACGATTTTGCATCTGTTCTAGAGGAACATaGTTCACCAGCCCGCTGACGACCGTGCGCGGGGCT | + |
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Preference number: 6 (lower is better) Translates to: TTIRFCICSRGT*FTSPLTTVRGA Trigger: AGCCCCGCGCACGGTCGTCAGCGGGCTGGTGAATCATGTTCCTCTAGAACAGATGCAAAATCGTATGGTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS TCA 72 bp | CCCGTTGGGAGGGGCCAGAATCTCCACTTTCTCTGGTaGACTGGCACACATCACCATGGCTTGAGACAGAAC | + |
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Preference number: 6 (lower is better) Translates to: PVGRGQNLHFLW*TGTHHHGLRQN Trigger: GTTCTGTCTCAAGCCATGGTGATGTGTGCCAGTTCACCAGAGAAAGTGGAGATTCTGGCCCCTCCCAACGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS CAA 72 bp | CCAATTCGAAGATCCAGACGCGATGCGTCGATAGGCTaGGAGTCAGTACTTGCTGCTGCCGACTGCTGCTTC | + |
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Preference number: 6 (lower is better) Translates to: PIRRSRRDASIG*ESVLAAADCCF Trigger: GAAGCAGCAGTCGGCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGTCTGGATCTTCGAATTGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS GCA 72 bp | GTAGCAGGAGAGGCGGTGGTTGCTACTGATGGAGACTaGACCACACTTTCAGAAGCAGTACAGTTCGTCTGC | + |
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Preference number: 6 (lower is better) Translates to: VAGEAVVATDGD*TTLSEAVQFVC Trigger: GCAGACGAACTGTACTGCTTCTGAAAGTGTGGTGCAGTCTCCATCAGTAGCAACCACCGCCTCTCCTGCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029663.11 ENSMUST00000197793.5 ENSMUST00000198513.6 |
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| CDS GCA 72 bp | ACGCGATGCGTCGATAGGCTTGGAGTCAGTACTTGCTaGTGCCGACTGCTGCTTCTCCTTTTTCTCTCCTTT | + |
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Preference number: 6 (lower is better) Translates to: TRCVDRLGVSTC*CRLLLLLFLSF Trigger: AAAGGAGAGAAAAAGGAGAAGCAGCAGTCGGCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS CAA 90 bp | ACAATACAACCAATTCGAAGATCCAGACGCGATGCGTCGATAGGCTaGGAGTCAGTACTTGCTGCTGCCGACTGCTGCTTCTCCTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: TIQPIRRSRRDASIG*ESVLAAADCCFSFF Trigger: GAAAAAGGAGAAGCAGCAGTCGGCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGTCTGGATCTTCGAATTGGTTGTATTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS GCA 72 bp | AGTAACAATACAACCAATTCGAAGATCCAGACGCGATaGGTCGATAGGCTTGGAGTCAGTACTTGCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SNNTTNSKIQTR*VDRLGVSTCCC Trigger: GCAGCAGCAAGTACTGACTCCAAGCCTATCGACGCATCGCGTCTGGATCTTCGAATTGGTTGTATTGTTACT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS CAA 90 bp | AGCAGTACAGTTCGTCTGCAGTGGAGTACTCAATCGAACACGCACTaGCTCCACTCCGTTATGAATTTCTGCCAGAATCAGCTCTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SSTVRLQWSTQSNTH*LHSVMNFCQNQLLL Trigger: AAGCAAGAGCTGATTCTGGCAGAAATTCATAACGGAGTGGAGCAAGTGCGTGTTCGATTGAGTACTCCACTGCAGACGAACTGTACTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029663.11 ENSMUST00000197793.5 ENSMUST00000198513.6 |
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| CDS GCA 72 bp | TTCTCTTTCACCTTCTTTTCTTCTCCCGCTTTGATCTaGTCTTTTGTAGCAGGAGAGGCGGTGGTTGCTACT | + |
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Preference number: 6 (lower is better) Translates to: FSFTFFSSPALI*SFVAGEAVVAT Trigger: AGTAGCAACCACCGCCTCTCCTGCTACAAAAGAGCAGATCAAAGCGGGAGAAGAAAAGAAGGTGAAAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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| CDS CAA 72 bp | ACATCACCATGGCTTGAGACAGAACTCCCCGCATCTTaGCAGGCTTCAGATTACAGAGTAAAACCACCATAC | + |
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Preference number: 6 (lower is better) Translates to: TSPWLETELPAS*QASDYRVKPPY Trigger: GTATGGTGGTTTTACTCTGTAATCTGAAGCCTGCAAAGATGCGGGGAGTTCTGTCTCAAGCCATGGTGATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029663.11 ENSMUST00000198513.6 |
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