Pregenerated sensors for AIF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024397Ensembl transcript IDs: ENSMUST00000025257.12, ENSMUST00000172693.8, ENSMUST00000173106.2, ENSMUST00000173324.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GAGAGCAGAGAGAGTAATTGCTGTTGTGGGGGTTTGAGGAGTTGGTaGCTGAGCAATGCCAGGGTAGAAGGTATGGAAGGAGGGTGTAGG | + |
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Preference number: 5 (lower is better) Translates to: ESRESNCCCGGLRSW*LSNARVEGMEGGCR Trigger: CCTACACCCTCCTTCCATACCTTCTACCCTGGCATTGCTCAGCCACCAACTCCTCAAACCCCCACAACAGCAATTACTCTCTCTGCTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173106.2 |
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| CDS GCA 90 bp | ACTCCATGTACTTCACTGGACGAGAAAGAGAGCAGAGAGAGTAATTaGTGTTGTGGGGGTTTGAGGAGTTGGTGGCTGAGCAATGCCAGG | + |
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Preference number: 5 (lower is better) Translates to: TPCTSLDEKESRESN*CCGGLRSWWLSNAR Trigger: CCTGGCATTGCTCAGCCACCAACTCCTCAAACCCCCACAACAGCAATTACTCTCTCTGCTCTCTTTCTCGTCCAGTGAAGTACATGGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173106.2 |
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| CDS CCA 90 bp | AAAGAGAGCAGAGAGAGTAATTGCTGTTGTGGGGGTTTGAGGAGTTaGTGGCTGAGCAATGCCAGGGTAGAAGGTATGGAAGGAGGGTGT | + |
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Preference number: 5 (lower is better) Translates to: KESRESNCCCGGLRS*WLSNARVEGMEGGC Trigger: ACACCCTCCTTCCATACCTTCTACCCTGGCATTGCTCAGCCACCAACTCCTCAAACCCCCACAACAGCAATTACTCTCTCTGCTCTCTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173106.2 |
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| CDS CAA 90 bp | GGGGGCGCCTTGAAGGCTTCAAGTTTGGACGGCAGATCCTCATCATaGCTGTATTTGGGATCATCGAGGAATTGCTTGTTGATCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: GGALKASSLDGRSSS*LYLGSSRNCLLIPS Trigger: GGAGGGGATCAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGGCGCCCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173106.2 |
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| CDS CCA 72 bp | GAGAGTAATTGCTGTTGTGGGGGTTTGAGGAGTTGGTaGCTGAGCAATGCCAGGGTAGAAGGTATGGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: ESNCCCGGLRSW*LSNARVEGMEG Trigger: TCCTTCCATACCTTCTACCCTGGCATTGCTCAGCCACCAACTCCTCAAACCCCCACAACAGCAATTACTCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000173106.2 |
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| CDS CAA 90 bp | TTGAAGGCTTCAAGTTTGGACGGCAGATCCTCATCATTGCTGTATTaGGGATCATCGAGGAATTGCTTGTTGATCCCCTCCAGCCTCTCT | + |
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Preference number: 6 (lower is better) Translates to: LKASSLDGRSSSLLY*GSSRNCLLIPSSLS Trigger: AGAGAGGCTGGAGGGGATCAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025257.12 ENSMUST00000172693.8 ENSMUST00000173106.2 ENSMUST00000173324.8 |
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| CDS CAA 90 bp | TACTTCACCTTGAAGGCTTCAAGTTTGGACGGCAGATCCTCATCATaGCTGTATTTGGGATCATCGAGGAATTGCTTGTTGATCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: YFTLKASSLDGRSSS*LYLGSSRNCLLIPS Trigger: GGAGGGGATCAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGGTGAAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000025257.12 ENSMUST00000172693.8 ENSMUST00000173324.8 |
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| CDS CAA 72 bp | TCAAGTTTGGACGGCAGATCCTCATCATTGCTGTATTaGGGATCATCGAGGAATTGCTTGTTGATCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SSLDGRSSSLLY*GSSRNCLLIPS Trigger: GGAGGGGATCAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000025257.12 ENSMUST00000172693.8 ENSMUST00000173106.2 ENSMUST00000173324.8 |
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| CDS CAA 90 bp | CCATTCAGATCAAACTCCATGTACTTCACCTTGAAGGCTTCAAGTTaGGACGGCAGATCCTCATCATTGCTGTATTTGGGATCATCGAGG | + |
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Preference number: 6 (lower is better) Translates to: PFRSNSMYFTLKASS*DGRSSSLLYLGSSR Trigger: CCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAAGGTGAAGTACATGGAGTTTGATCTGAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000025257.12 ENSMUST00000172693.8 ENSMUST00000173324.8 |
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| CDS CAA 72 bp | TTGAAGGCTTCAAGTTTGGACGGCAGATCCTCATCATaGCTGTATTTGGGATCATCGAGGAATTGCTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: LKASSLDGRSSS*LYLGSSRNCLL Trigger: CAACAAGCAATTCCTCGATGATCCCAAATACAGCAATGATGAGGATCTGCCGTCCAAACTTGAAGCCTTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000025257.12 ENSMUST00000172693.8 ENSMUST00000173106.2 ENSMUST00000173324.8 |
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