Pregenerated sensors for AIDA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042901Ensembl transcript IDs: ENSMUST00000109166.8, ENSMUST00000193625.2, ENSMUST00000193959.6
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGAAGAGGGCACTAGATCCCCATAACTGGAGTTACAGGCAGTTGTaGGCCATCATGTGGGTGCTGGGAACTGAACCCCGGTTCTCTGCA | + |
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Preference number: 1 (lower is better) Translates to: QKRALDPHNWSYRQL*AIMWVLGTEPRFSA Trigger: TGCAGAGAACCGGGGTTCAGTTCCCAGCACCCACATGATGGCTCACAACTGCCTGTAACTCCAGTTATGGGGATCTAGTGCCCTCTTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CCA 90 bp | GATAATCCACCTGACGATACACGTGCTCTCTTCAGGAAATCAGTCTaGTCATCCGGGGAACACTCAGGGTGGGATGCTCATCTGGCCAGG | + |
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Preference number: 1 (lower is better) Translates to: DNPPDDTRALFRKSV*SSGEHSGWDAHLAR Trigger: CCTGGCCAGATGAGCATCCCACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGTCAGGTGGATTATC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR CCA 90 bp | TGCTTGCATGTATGTATGTGCAACATGTGTTGTGTCTGGTACCCATaGGGCCAGAAGAGGGCACTAGATCCCCATAACTGGAGTTACAGG | + |
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Preference number: 1 (lower is better) Translates to: CLHVCMCNMCCVWYP*GQKRALDPHNWSYR Trigger: CCTGTAACTCCAGTTATGGGGATCTAGTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTGCACATACATACATGCAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 90 bp | AGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGATGTaGACCACCAGTGCCTGGCGAGCTTTAGTTTTTAATATCATGTTC | + |
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Preference number: 1 (lower is better) Translates to: RNLPASASRVLGLKM*TTSAWRALVFNIMF Trigger: GAACATGATATTAAAAACTAAAGCTCGCCAGGCACTGGTGGTGCACATCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR TCA 90 bp | AAGCCTGTCTGTCTACGGATGGCACAGAGGACAGGATACCTCAGTTaGGTCGGACTCTTCCATTTAAAAGTTCTTGTTTCAGAAGTCCCC | + |
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Preference number: 1 (lower is better) Translates to: KPVCLRMAQRTGYLS*VGLFHLKVLVSEVP Trigger: GGGGACTTCTGAAACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGTGCCATCCGTAGACAGACAGGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 90 bp | AAATCATCAGAAATATGTGTAGAACCCTCAGTTGTAGCATTTCTGTaGCCTCTGAGCCAGTCGATTACTGCCTTTCCTCAGCCCCATCTG | + |
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Preference number: 1 (lower is better) Translates to: KSSEICVEPSVVAFL*PLSQSITAFPQPHL Trigger: CAGATGGGGCTGAGGAAAGGCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACACATATTTCTGATGATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR TCA 90 bp | CAGTGCTGTAGCACAGAAAATTACCACCTTGCTATTTGTCTTTTATaGTCTGTAAGAAATGAGAAAGGACAATGTACAGTCTTTGCTACG | + |
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Preference number: 1 (lower is better) Translates to: QCCSTENYHLAICLL*SVRNEKGQCTVFAT Trigger: CGTAGCAAAGACTGTACATTGTCCTTTCTCATTTCTTACAGATCATAAAAGACAAATAGCAAGGTGGTAATTTTCTGTGCTACAGCACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR TCA 90 bp | ACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTGGTCACTTCCTGCCTGTTaGAGGGCTCACTTCCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: TRALFRKSVWSSGEHSGWSLPAC*RAHFLP Trigger: AGGCAGGAAGTGAGCCCTTCAACAGGCAGGAAGTGA...CCACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | CACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTGACATCTGACTCACTTCCTGCCTGTTaGAGGGCTCACTTCCTGCCT | + |
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Preference number: 2 (lower is better) Translates to: HNGWSGKQQLSRNILTSDSLPAC*RAHFLP Trigger: AGGCAGGAAGTGAGCCCTTCAACAGGCAGGAAGTGA...GTCAGATGTCAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | ACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTGGAGGTCAGTGATGTGCTaGACTTTTGTTCTGGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: TRALFRKSVWSSGEHSGWRSVMC*TFVLGS Trigger: GGACCCCAGAACAAAAGTTCAGCACATCACTGACCT...CCACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CCA 90 bp | TACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTGTATGCAGGAGACCCATaGCACCAGGCTAGGTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: YTCSLQEISLVIRGTLRVYAGDP*HQARSL Trigger: AAGAGACCTAGCCTGGTGCCATGGGTCTCCTGCATA...CACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CCA 90 bp | TATGTATGTGCAACATGTGTTGTGTCTGGTACCCATGGGGCCAGAAGAGGGCACCCATCATGTGGGTGCTaGGAACTGAACCCCGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: YVCATCVVSGTHGARRGHPSCGC*ELNPGS Trigger: AGAACCGGGGTTCAGTTCCCAGCACCCACATGATGG...GTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTGCACATACATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR TCA 90 bp | CGATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGCTCACAGCGTGGCATTaGAACCAGAAGAGCATACTG | + |
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Preference number: 2 (lower is better) Translates to: RYTCSLQEISLVIRGTLRLTAWH*NQKSIL Trigger: CAGTATGCTCTTCTGGTTTCAATGCCACGCTGTGAG...CCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR GCA 90 bp | AGGTCTCACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTGACAGCACATCTACAACAGTaGTGTCCGGGAAACAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: RSHNGWSGKQQLSRNILTAHLQQ*CPGNRG Trigger: TCCCCTGTTTCCCGGACAGCACTGTTGTAGATGTGC...TGTCAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTGAGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR GCA 90 bp | GACGATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGCACATCTACAACAGTaGTGTCCGGGAAACAGGGGA | + |
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Preference number: 2 (lower is better) Translates to: DDTRALFRKSVWSSGEHSAHLQQ*CPGNRG Trigger: TCCCCTGTTTCCCGGACAGCACTGTTGTAGATGTGC...TGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | ACGATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGCTCACAGCGTGGCATTaGAACCAGAAGAGCATACTG | + |
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Preference number: 2 (lower is better) Translates to: TIHVLSSGNQSGHPGNTQLTAWH*NQKSIL Trigger: CAGTATGCTCTTCTGGTTTCAATGCCACGCTGTGAG...CTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | CAACATGTGTTGTGTCTGGTACCCATGGGGCCAGAAGAGGGCACTAGATCCCCAATATGCCATGCTGTGTaGATGATCAGTGCTGTAGCA | + |
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Preference number: 2 (lower is better) Translates to: QHVLCLVPMGPEEGTRSPICHAV*MISAVA Trigger: TGCTACAGCACTGATCATTCACACAGCATGGCATAT...TGGGGATCTAGTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR GCA 90 bp | ATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTAGGTCACACTTTCTATaGAGGAGACCCATGGCACCA | + |
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Preference number: 2 (lower is better) Translates to: IHVLSSGNQSGHPGNTQGRSHFL*RRPMAP Trigger: TGGTGCCATGGGTCTCCTGCATAGAAAGTGTGACCT...ACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR GCA 90 bp | AGATTTTTGCATACTAAGGAGAGGTACGGGGTCTTAAGGTCTCACAACGGGTGGACACTCAGGGTGGGATaGTCATCTGGCCAGGTCACA | + |
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Preference number: 2 (lower is better) Translates to: RFLHTKERYGVLRSHNGWTLRVG*SSGQVT Trigger: TGTGACCTGGCCAGATGAGCATCCCACCCTGAGTGT...CCACCCGTTGTGAGACCTTAAGACCCCGTACCTCTCCTTAGTATGCAAAAATCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR CAA 90 bp | GTTCCTCTCAGAGCAGTTCTACCCACTTCAACTCACAGCGTGGCATaGAAACCAGAAGAGCATACTGGAGCAGAAGTGAGCAGAGACGTA | + |
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Preference number: 2 (lower is better) Translates to: VPLRAVLPTSTHSVA*KPEEHTGAEVSRDV Trigger: TACGTCTCTGCTCACTTCTGCTCCAGTATGCTCTTCTGGTTTCAATGCCACGCTGTGAGTTGAAGTGGGTAGAACTGCTCTGAGAGGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR CAA 90 bp | AAAGAGGGAGTGGCGGCTTCTGTGCCTGGTCTATTAATTCACATTTaGCTCCCCTCTATTCATATCCTGCACGGACTCCACCCAAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: KEGVAASVPGLLIHI*LPSIHILHGLHPKQ Trigger: CTGCTTTGGGTGGAGTCCGTGCAGGATATGAATAGAGGGGAGCAAAATGTGAATTAATAGACCAGGCACAGAAGCCGCCACTCCCTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193959.6 |
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| 3UTR-3UTR CCA 90 bp | GTCTTAAGGTCTCACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCACCAGAAGAGCATACTaGAGCAGAAGTGAGCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: VLRSHNGWSGKQQLSRNITRRAY*SRSEQR Trigger: TCTCTGCTCACTTCTGCTCCAGTATGCTCTTCTGGT...GATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTGAGACCTTAAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CCA 90 bp | AGTCCAGTTCCTCTCAGAGCAGTTCTACCCACTTCAACTCACAGCGTGGCATTGACCAGAAGAGCATACTaGAGCAGAAGTGAGCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: SPVPLRAVLPTSTHSVALTRRAY*SRSEQR Trigger: TCTCTGCTCACTTCTGCTCCAGTATGCTCTTCTGGT...CAATGCCACGCTGTGAGTTGAAGTGGGTAGAACTGCTCTGAGAGGAACTGGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CCA 90 bp | AGATTTTTGCATACTAAGGAGAGGTACGGGGTCTTAAGGTCTCACAACGGGTGGTATGCAGGAGACCCATaGCACCAGGCTAGGTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: RFLHTKERYGVLRSHNGWYAGDP*HQARSL Trigger: AAGAGACCTAGCCTGGTGCCATGGGTCTCCTGCATA...CCACCCGTTGTGAGACCTTAAGACCCCGTACCTCTCCTTAGTATGCAAAAATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | AGGTCTCACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTGACAGGAGTGATAGGTCAGTaGTGTGCTGAACTTTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: RSHNGWSGKQQLSRNILTGVIGQ*CAELLF Trigger: GAACAAAAGTTCAGCACATCACTGACCTATCACTCC...TGTCAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTGAGACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR TCA 90 bp | TGTAGAACCCTCAGTTGTAGCATTTCTGTGCCCTCTGAGCCAGTCGATTACTGCTGGCCTAGTAGGTGCTaGATGAAAGCCAAGACTAGA | + |
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Preference number: 2 (lower is better) Translates to: CRTLSCSISVPSEPVDYCWPSRC*MKAKTR Trigger: TCTAGTCTTGGCTTTCATTCAGCACCTACTAGGCCA...GCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR GCA 90 bp | TCAGAAATATGTGTAGAACCCTCAGTTGTAGCATTTCTGTGCCCTCTGAGCCAGCTGGGATTAAAGATGTaGACCACCAGTGCCTGGCGA | + |
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Preference number: 2 (lower is better) Translates to: SEICVEPSVVAFLCPLSQLGLKM*TTSAWR Trigger: TCGCCAGGCACTGGTGGTGCACATCTTTAATCCCAG...CTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACACATATTTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CAA 90 bp | GAAGCCTGTCTGTCTACGGATGGCACAGAGGACAGGATACCTCAGTaGAGTCGGACTCTTCCATTTAAAAGTTCTTGTTTCAGAAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: EACLSTDGTEDRIPQ*SRTLPFKSSCFRSP Trigger: GGGACTTCTGAAACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGTGCCATCCGTAGACAGACAGGCTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR TCA 90 bp | TGTAGAACCCTCAGTTGTAGCATTTCTGTGCCCTCTGAGCCAGTCGATTACTGCGGAGTGATAGGTCAGTaGTGTGCTGAACTTTTGTTC | + |
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Preference number: 2 (lower is better) Translates to: CRTLSCSISVPSEPVDYCGVIGQ*CAELLF Trigger: GAACAAAAGTTCAGCACATCACTGACCTATCACTCC...GCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR TCA 90 bp | TGTAGAACCCTCAGTTGTAGCATTTCTGTGCCCTCTGAGCCAGTCGATTACTGCCTAGTAGGTGCTGAATaGAAGCCAAGACTAGATCTC | + |
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Preference number: 2 (lower is better) Translates to: CRTLSCSISVPSEPVDYCLVGAE*KPRLDL Trigger: GAGATCTAGTCTTGGCTTTCATTCAGCACCTACTAG...GCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR GCA 90 bp | AGGTCTCACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTGACAAGAGACGTAGACTCTTaGACATTCTTATTGCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: RSHNGWSGKQQLSRNILTRDVDS*TFLLLH Trigger: ATGCAGCAATAAGAATGTGCAAGAGTCTACGTCTCT...TGTCAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTGAGACCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR GCA 90 bp | GACGATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAAGAGACGTAGACTCTTaGACATTCTTATTGCTGCAT | + |
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Preference number: 2 (lower is better) Translates to: DDTRALFRKSVWSSGEHSRDVDS*TFLLLH Trigger: ATGCAGCAATAAGAATGTGCAAGAGTCTACGTCTCT...TGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGGACAGGATACCTCAGTTGAGTCGGACTCTTCCATTTAAAAGTTCTTGTTCAAACTCAGAAATCTaGCTGCCTCTGCCTCCCGAG | + |
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Preference number: 2 (lower is better) Translates to: TEDRIPQLSRTLPFKSSCSNSEI*LPLPPE Trigger: CTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTTGA...ACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCTTGATCAAACTTGCTATCCTCCTGCCTCAGCTATCTTGACTAACCTAAATGTTGTAGCATTTCTGTaGCCTCTGAGCCAGTCGATT | + |
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Preference number: 2 (lower is better) Translates to: RLDQTCYPPASAILTNLNVVAFL*PLSQSI Trigger: AATCGACTGGCTCAGAGGGCACAGAAATGCTACAAC...ATTTAGGTTAGTCAAGATAGCTGAGGCAGGAGGATAGCAAGTTTGATCAAGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CCA 90 bp | ACAGAGGACAGGATACCTCAGTTGAGTCGGACTCTTCCATTTAAAAGTTCTTGTGACGGCAGGCATTTGTaGTTCATATATGCCATGCTG | + |
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Preference number: 2 (lower is better) Translates to: TEDRIPQLSRTLPFKSSCDGRHL*FIYAML Trigger: CAGCATGGCATATATGAACCACAAATGCCTGCCGTC...ACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR TCA 90 bp | AGGCTTGATCAAACTTGCTATCCTCCTGCCTCAGCTATCTTGACTAACCTAAATTATCCCGCAACATCTTaGCATCTGACTCAACTGTTC | + |
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Preference number: 2 (lower is better) Translates to: RLDQTCYPPASAILTNLNYPATS*HLTQLF Trigger: GAACAGTTGAGTCAGATGTCAAGATGTTGCGGGATA...ATTTAGGTTAGTCAAGATAGCTGAGGCAGGAGGATAGCAAGTTTGATCAAGCCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR GCA 90 bp | ACAGAGGACAGGATACCTCAGTTGAGTCGGACTCTTCCATTTAAAAGTTCTTGTCATGTTCCACTAAAGTaGTTTATTAACCCTGACGGC | + |
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Preference number: 2 (lower is better) Translates to: TEDRIPQLSRTLPFKSSCHVPLK*FINPDG Trigger: GCCGTCAGGGTTAATAAAGCACTTTAGTGGAACATG...ACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CCA 90 bp | TCAGAAATATGTGTAGAACCCTCAGTTGTAGCATTTCTGTGCCCTCTGAGCCAGGATGATTTTAGCAGTTaGAACTACCCAATCAAGATT | + |
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Preference number: 2 (lower is better) Translates to: SEICVEPSVVAFLCPLSQDDFSS*NYPIKI Trigger: AATCTTGATTGGGTAGTTCCAACTGCTAAAATCATC...CTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACACATATTTCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CAA 90 bp | CAACATGTGTTGTGTCTGGTACCCATGGGGCCAGAAGAGGGCACTAGATCCCCACTCACTTCCTGCCTGTaGAAGGGCTCACTTCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: QHVLCLVPMGPEEGTRSPLTSCL*KGSLPA Trigger: GGCAGGAAGTGAGCCCTTCAACAGGCAGGAAGTGAG...TGGGGATCTAGTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CAA 90 bp | ACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTGGCTCACTTCCTGCCTGTaGAAGGGCTCACTTCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: TRALFRKSVWSSGEHSGWLTSCL*KGSLPA Trigger: GGCAGGAAGTGAGCCCTTCAACAGGCAGGAAGTGAG...CCACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR TCA 72 bp | GCACTAGATCCCCATAACTGGAGTTACAGGCAGTTGTaGGCCATCATGTGGGTGCTGGGAACTGAACCCCGG | + |
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Preference number: 3 (lower is better) Translates to: ALDPHNWSYRQL*AIMWVLGTEPR Trigger: CCGGGGTTCAGTTCCCAGCACCCACATGATGGCTCACAACTGCCTGTAACTCCAGTTATGGGGATCTAGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 72 bp | TGTAGCATTTCTGTGCCCTCTGAGCCAGTCGATTACTaGCTTTCCTCAGCCCCATCTGACGAGGCCTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: CSISVPSEPVDY*LSSAPSDEACA Trigger: AGCACAGGCCTCGTCAGATGGGGCTGAGGAAAGGCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CCA 72 bp | CCTGACGATACACGTGCTCTCTTCAGGAAATCAGTCTaGTCATCCGGGGAACACTCAGGGTGGGATGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: PDDTRALFRKSV*SSGEHSGWDAH Trigger: ATGAGCATCCCACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR GCA 72 bp | AAGTACCTTAGACCCTTCCATGACAGCTACAACTCTTaGCCCAGGAGCTTACAGCCTGGGGACCTACAACTC | + |
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Preference number: 3 (lower is better) Translates to: KYLRPFHDSYNS*PRSLQPGDLQL Trigger: GAGTTGTAGGTCCCCAGGCTGTAAGCTCCTGGGGCAAGAGTTGTAGCTGTCATGGAAGGGTCTAAGGTACTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 72 bp | CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGATGTaGACCACCAGTGCCTGGCGAGCTTTAGTTTTTAAT | + |
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Preference number: 3 (lower is better) Translates to: PASASRVLGLKM*TTSAWRALVFN Trigger: ATTAAAAACTAAAGCTCGCCAGGCACTGGTGGTGCACATCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 72 bp | ACTGGAGTTACAGGCAGTTGTGAGCCATCATGTGGGTaGTGGGAACTGAACCCCGGTTCTCTGCAAGATCAA | + |
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Preference number: 3 (lower is better) Translates to: TGVTGSCEPSCG*WELNPGSLQDQ Trigger: TTGATCTTGCAGAGAACCGGGGTTCAGTTCCCAGCACCCACATGATGGCTCACAACTGCCTGTAACTCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CCA 72 bp | AAGGAGAGGTACGGGGTCTTAAGGTCTCACAACGGGTaGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTG | + |
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Preference number: 3 (lower is better) Translates to: KERYGVLRSHNG*SGKQQLSRNIL Trigger: CAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTGAGACCTTAAGACCCCGTACCTCTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR TCA 72 bp | CAGGCAGTTGTGAGCCATCATGTGGGTGCTGGGAACTaGACCCCGGTTCTCTGCAAGATCAAAAAGTGCTTT | + |
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Preference number: 3 (lower is better) Translates to: QAVVSHHVGAGN*TPVLCKIKKCF Trigger: AAAGCACTTTTTGATCTTGCAGAGAACCGGGGTTCAGTTCCCAGCACCCACATGATGGCTCACAACTGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CCA 72 bp | GGAGTTACAGGCAGTTGTGAGCCATCATGTGGGTGCTaGGAACTGAACCCCGGTTCTCTGCAAGATCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: GVTGSCEPSCGC*ELNPGSLQDQK Trigger: TTTTTGATCTTGCAGAGAACCGGGGTTCAGTTCCCAGCACCCACATGATGGCTCACAACTGCCTGTAACTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CCA 72 bp | GTATGTATGTGCAACATGTGTTGTGTCTGGTACCCATaGGGCCAGAAGAGGGCACTAGATCCCCATAACTGG | + |
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Preference number: 3 (lower is better) Translates to: VCMCNMCCVWYP*GQKRALDPHNW Trigger: CCAGTTATGGGGATCTAGTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTGCACATACATAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CAA 90 bp | ATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTACTCACAGCGTGGCATaGAAACCAGAAGAGCATACT | + |
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Preference number: 3 (lower is better) Translates to: IHVLSSGNQSGHPGNTQGTHSVA*KPEEHT Trigger: AGTATGCTCTTCTGGTTTCAATGCCACGCTGTGAGT...ACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CAA 90 bp | CACAACGGGTGGTCAGGAAAGCAGCAGTTATCCCGCAACATCTTGACATCTGACATTCTTATTGCTGCATaGTCTGAAGTTCTGCACATC | + |
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Preference number: 3 (lower is better) Translates to: HNGWSGKQQLSRNILTSDILIAA*SEVLHI Trigger: GATGTGCAGAACTTCAGACAATGCAGCAATAAGAAT...GTCAGATGTCAAGATGTTGCGGGATAACTGCTGCTTTCCTGACCACCCGTTGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CAA 90 bp | TATGTATGTGCAACATGTGTTGTGTCTGGTACCCATGGGGCCAGAAGAGGGCACTCTTCTAAGGAGACTTaGCTAGGCAATGTAACTAGT | + |
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Preference number: 3 (lower is better) Translates to: YVCATCVVSGTHGARRGHSSKET*LGNVTS Trigger: ACTAGTTACATTGCCTAGCAAAGTCTCCTTAGAAGA...GTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTGCACATACATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CAA 90 bp | GACGATACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCATCTTCTAAGGAGACTTaGCTAGGCAATGTAACTAGT | + |
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Preference number: 3 (lower is better) Translates to: DDTRALFRKSVWSSGEHSSSKET*LGNVTS Trigger: ACTAGTTACATTGCCTAGCAAAGTCTCCTTAGAAGA...TGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTATCGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR-3UTR CAA 90 bp | TATGTATGTGCAACATGTGTTGTGTCTGGTACCCATGGGGCCAGAAGAGGGCACGAAAAAGCAAGTATATaGAATGGTGTGGTGAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: YVCATCVVSGTHGARRGHEKASI*NGVVRS Trigger: TGACCTCACCACACCATTCAATATACTTGCTTTTTC...GTGCCCTCTTCTGGCCCCATGGGTACCAGACACAACACATGTTGCACATACATA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 72 bp | GAAATATGTGTAGAACCCTCAGTTGTAGCATTTCTGTaGCCTCTGAGCCAGTCGATTACTGCCTTTCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: EICVEPSVVAFL*PLSQSITAFPQ Trigger: CTGAGGAAAGGCAGTAATCGACTGGCTCAGAGGGCACAGAAATGCTACAACTGAGGGTTCTACACATATTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR-3UTR CAA 90 bp | ACTTTCTATGCAGGAGACCCATGGCACCAGGCTAGGTCTCTTCTAAGGAGACTTATTCTTATTGCTGCATaGTCTGAAGTTCTGCACATC | + |
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Preference number: 3 (lower is better) Translates to: TFYAGDPWHQARSLLRRLILIAA*SEVLHI Trigger: GATGTGCAGAACTTCAGACAATGCAGCAATAAGAAT...AAGTCTCCTTAGAAGAGACCTAGCCTGGTGCCATGGGTCTCCTGCATAGAAAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR TCA 72 bp | CGGCAGGCATTTGTGGTTCATATATGCCATGCTGTGTaGATGATCAGTGCTGTAGCACAGAAAATTACCACC | + |
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Preference number: 3 (lower is better) Translates to: RQAFVVHICHAV*MISAVAQKITT Trigger: GGTGGTAATTTTCTGTGCTACAGCACTGATCATTCACACAGCATGGCATATATGAACCACAAATGCCTGCCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR GCA 72 bp | ACCCTGACGGCAGGCATTTGTGGTTCATATATGCCATaGTGTGTGAATGATCAGTGCTGTAGCACAGAAAAT | + |
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Preference number: 3 (lower is better) Translates to: TLTAGICGSYMP*CVNDQCCSTEN Trigger: ATTTTCTGTGCTACAGCACTGATCATTCACACAGCATGGCATATATGAACCACAAATGCCTGCCGTCAGGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR TCA 72 bp | TGTCTACGGATGGCACAGAGGACAGGATACCTCAGTTaGGTCGGACTCTTCCATTTAAAAGTTCTTGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: CLRMAQRTGYLS*VGLFHLKVLVS Trigger: TGAAACAAGAACTTTTAAATGGAAGAGTCCGACTCAACTGAGGTATCCTGTCCTCTGTGCCATCCGTAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR TCA 72 bp | AAGTATATTGAATGGTGTGGTGAGGTCACTGACATGTaGATATTAAAGTATATGGCATGTCTAACCCACAGA | + |
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Preference number: 3 (lower is better) Translates to: KYIEWCGEVTDM*ILKYMACLTHR Trigger: TCTGTGGGTTAGACATGCCATATACTTTAATATTCACATGTCAGTGACCTCACCACACCATTCAATATACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CAA 72 bp | AGAGCAGTTCTACCCACTTCAACTCACAGCGTGGCATaGAAACCAGAAGAGCATACTGGAGCAGAAGTGAGC | + |
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Preference number: 4 (lower is better) Translates to: RAVLPTSTHSVA*KPEEHTGAEVS Trigger: GCTCACTTCTGCTCCAGTATGCTCTTCTGGTTTCAATGCCACGCTGTGAGTTGAAGTGGGTAGAACTGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109166.8 ENSMUST00000193625.2 |
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| 3UTR CAA 72 bp | GTGGCGGCTTCTGTGCCTGGTCTATTAATTCACATTTaGCTCCCCTCTATTCATATCCTGCACGGACTCCAC | + |
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Preference number: 4 (lower is better) Translates to: VAASVPGLLIHI*LPSIHILHGLH Trigger: GTGGAGTCCGTGCAGGATATGAATAGAGGGGAGCAAAATGTGAATTAATAGACCAGGCACAGAAGCCGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000193959.6 |
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| CDS-3UTR GCA 90 bp | TACACGTGCTCTCTTCAGGAAATCAGTCTGGTCATCCGGGGAACACTCAGGGTGCGGGAGTTAAATCTATaGCATTCAAATCTTTCACGC | + |
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Preference number: 4 (lower is better) Translates to: YTCSLQEISLVIRGTLRVRELNL*HSNLSR Trigger: GCGTGAAAGATTTGAATGGCATAGATTTAACTCCCG...CACCCTGAGTGTTCCCCGGATGACCAGACTGATTTCCTGAAGAGAGCACGTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CAA 72 bp | GGGGAGTGCTTTTGTGTTCACTGCTTTAAGACAATCTaGTCATTCGGGTCTGATTTAAAGCTGAGCTTTAAT | + |
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Preference number: 4 (lower is better) Translates to: GECFCVHCFKTI*SFGSDLKLSFN Trigger: ATTAAAGCTCAGCTTTAAATCAGACCCGAATGACAAGATTGTCTTAAAGCAGTGAACACAAAAGCACTCCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CAA 72 bp | TTTTTAAAGATAAGGTCTCACCTATATAGTCCAGGCTaGATCAAACTTGCTATCCTCCTGCCTCAGCTATCT | + |
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Preference number: 4 (lower is better) Translates to: FLKIRSHLYSPG*IKLAILLPQLS Trigger: AGATAGCTGAGGCAGGAGGATAGCAAGTTTGATCAAGCCTGGACTATATAGGTGAGACCTTATCTTTAAAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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| 3UTR CAA 72 bp | CTTCCTTGTGGTTATTTACTTGAAAAAGCAAGTATATaGAATGGTGTGGTGAGGTCACTGACATGTGAATAT | + |
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Preference number: 4 (lower is better) Translates to: LPCGYLLEKASI*NGVVRSLTCEY Trigger: ATATTCACATGTCAGTGACCTCACCACACCATTCAATATACTTGCTTTTTCAAGTAAATAACCACAAGGAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000109166.8 |
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