RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AGXT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026272

Ensembl transcript IDs: ENSMUST00000027491.7

Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCATTTGTAGGGAGAGGGGAAGCTTCACCCTGCTCCTTCCGGCATaGCCTGGCTACATCAGCATCTTTGCTGGCTCTAGGCCTTGCACA +
Preference number: 1 (lower is better)
Translates to: SICRERGSFTLLLPA*PGYISIFAGSRPCT
Trigger: TGTGCAAGGCCTAGAGCCAGCAAAGATGCTGATGTAGCCAGGCCATGCCGGAAGGAGCAGGGTGAAGCTTCCCCTCTCCCTACAAATGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR GCA 90 bp CCGGCATGGCCTGGCTACATCAGCATCTTTGCTGGCTCTAGGCCTTaGACAGTCTTTTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAG +
Preference number: 1 (lower is better)
Translates to: PAWPGYISIFAGSRP*TVFSFLLYSQPLQE
Trigger: CTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGGCCTAGAGCCAGCAAAGATGCTGATGTAGCCAGGCCATGCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR CCA 90 bp AGGAGATTCCTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTaGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGT +
Preference number: 1 (lower is better)
Translates to: RRFLASTLLKIPKDQ*PAGNSSIRRCLASC
Trigger: ACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAGGAATCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR GCA 90 bp ATTCCTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTaGAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCA +
Preference number: 1 (lower is better)
Translates to: IPRKHFIENSQRPVA*RQQLHQKVFSILFP
Trigger: TGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAGGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR-3UTR GCA 90 bp CGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCGGGGAAGCTTCACCCTaGTCCTTCCGGCATGGCCTG +
Preference number: 2 (lower is better)
Translates to: RKHFIENSQRPVACRQQLGEASP*SFRHGL
Trigger: CAGGCCATGCCGGAAGGAGCAGGGTGAAGCTTCCCC...GAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR-3UTR GCA 90 bp TGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCGCTGGCTCTAGGCCTTaGACAGTCTTTTCGTTCTTG +
Preference number: 2 (lower is better)
Translates to: CRQQLHQKVFSILFPQGSAGSRP*TVFSFL
Trigger: CAAGAACGAAAAGACTGTGCAAGGCCTAGAGCCAGC...GGAACCTTGTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR CCA 72 bp AGGGAGAGGGGAAGCTTCACCCTGCTCCTTCCGGCATaGCCTGGCTACATCAGCATCTTTGCTGGCTCTAGG +
Preference number: 3 (lower is better)
Translates to: RERGSFTLLLPA*PGYISIFAGSR
Trigger: CCTAGAGCCAGCAAAGATGCTGATGTAGCCAGGCCATGCCGGAAGGAGCAGGGTGAAGCTTCCCCTCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR CCA 72 bp CTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTaGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTA +
Preference number: 3 (lower is better)
Translates to: LASTLLKIPKDQ*PAGNSSIRRCL
Trigger: TAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACGCTGATACGAGCCCATaGTCCGGACCCAACCTGCCG +
Preference number: 4 (lower is better)
Translates to: QWPAGNSSIRRCLASCFHADTSP*SGPNLP
Trigger: CGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGC...GTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACGCACCCTCTCCTCAGTaGGCCCAAGACCCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: QWPAGNSSIRRCLASCFHAPSPQ*AQDPQR
Trigger: TCTCTGGGGGTCTTGGGCCCACTGAGGAGAGGGTGC...GTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR TCA 90 bp GCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCGGTGGCACCAGCAGCTaGTACGAGCCCATGGTCCGG +
Preference number: 4 (lower is better)
Translates to: ASTLLKIPKDQWPAGNSSGGTSS*YEPMVR
Trigger: CCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACC...GGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCTTGCTCAGGGCCTCTaGCGGTGGCACCAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: PAGNSSIRRCLASCFHKVLAQGL*RWHQQL
Trigger: CAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCAAG...AACCTTGTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCCAGGGCCTCTGGCGGTaGCACCAGCAGCTGATACGA +
Preference number: 4 (lower is better)
Translates to: LASTLLKIPKDQWPAGNSQGLWR*HQQLIR
Trigger: TCGTATCAGCTGCTGGTGCCACCGCCAGAGGCCCTG...GCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp GCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCGCTGCACCACGCCAGTaGATGACTCCCCGTGGACCA +
Preference number: 4 (lower is better)
Translates to: ASTLLKIPKDQWPAGNSSAAPRQ*MTPRGP
Trigger: TGGTCCACGGGGAGTCATCCACTGGCGTGGTGCAGC...GGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR TCA 90 bp CAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGAGGCCCTGCTCTGCAATaGGTGCCAGGCTCTCCCTCA +
Preference number: 4 (lower is better)
Translates to: QKVFSILFPQGSICRERGGPALQ*VPGSPS
Trigger: TGAGGGAGAGCCTGGCACTCATTGCAGAGCAGGGCC...TCCCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp CCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTTGTTCTTAGGACAATaGTGCAGGGCCTCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: PKDQWPAGNSSIRRCLASLFLGQ*CRASLR
Trigger: CCTGAGGGAGGCCCTGCAGCATTGTCCTAAGAACAA...GGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR CAA 72 bp TGCTCCTTCCGGCATGGCCTGGCTACATCAGCATCTTaGCTGGCTCTAGGCCTTGCACAGTCTTTTCGTTCT +
Preference number: 4 (lower is better)
Translates to: CSFRHGLATSAS*LALGLAQSFRS
Trigger: AGAACGAAAAGACTGTGCAAGGCCTAGAGCCAGCAAAGATGCTGATGTAGCCAGGCCATGCCGGAAGGAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR TCA 90 bp AAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTGTTCTCCAGGCTTCTTaGTCATCTGGTGCACACGGG +
Preference number: 4 (lower is better)
Translates to: KDQWPAGNSSIRRCLASCVLQAS*SSGAHG
Trigger: CCCGTGTGCACCAGATGATCAAGAAGCCTGGAGAAC...ACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp AGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGAAGAACTGACAGGGGCTTaGTCAGGGCCTCTGGCGGTG +
Preference number: 4 (lower is better)
Translates to: RRCLASCFHKVPFVGRGEELTGA*SGPLAV
Trigger: CACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGTTC...TTCCCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp CAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACTCCTGCAGGTGTTTGTaGAGATGTGCTGTAGCCTCC +
Preference number: 4 (lower is better)
Translates to: QWPAGNSSIRRCLASCFHSCRCL*RCAVAS
Trigger: GGAGGCTACAGCACATCTGCACAAACACCTGCAGGA...GTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CCTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGAATACCGGTTTGTGTTaGGCCAGGCCCTCCTCCACC +
Preference number: 4 (lower is better)
Translates to: PRKHFIENSQRPVACRQQNTGLC*ARPSST
Trigger: GGTGGAGGAGGGCCTGGCCCAACACAAACCGGTATT...CTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CCTTGCACAGTCTTTTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCATAGGTCCACATTCTCAGTaGTGGCGTTGTAGCCCAGGA +
Preference number: 4 (lower is better)
Translates to: PCTVFSFLLYSQPLQEGIGPHSQ*WRCSPG
Trigger: TCCTGGGCTACAACGCCACCACTGAGAATGTGGACC...TATGCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
3UTR CAA 72 bp TTTGCTGGCTCTAGGCCTTGCACAGTCTTTTCGTTCTaGCTATATTCCCAGCCCCTCCAGGAGGGCATAGTC +
Preference number: 4 (lower is better)
Translates to: FAGSRPCTVFSF*LYSQPLQEGIV
Trigger: GACTATGCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGGCCTAGAGCCAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp CAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGATTCTTAGGACAATGCTaGAGGGCCTCCCTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: QKVFSILFPQGSICRERGFLGQC*RASLRA
Trigger: GGCCCTGAGGGAGGCCCTGCAGCATTGTCCTAAGAA...TCCCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp GCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCAGGGGGTTCCTGGTCTaGAACACATACTGGATGCCT +
Preference number: 4 (lower is better)
Translates to: ASTLLKIPKDQWPAGNSSRGFLV*NTYWMP
Trigger: AGGCATCCAGTATGTGTTCCAGACCAGGAACCCCCT...GGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR TCA 90 bp AGGCCTTGCACAGTCTTTTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCATTTGGCCAAGTATGTaGTGTCTGTGTAGAAGGAGA +
Preference number: 4 (lower is better)
Translates to: RPCTVFSFLLYSQPLQEGIWPSM*CLCRRR
Trigger: TCTCCTTCTACACAGACATCACATACTTGGCCAAAT...GCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGATGAGGGAGATCCCTaGTGGGGCATTCAGGACCTT +
Preference number: 4 (lower is better)
Translates to: HQKVFSILFPQGSICRERDEGDP*WGIQDL
Trigger: AAGGTCCTGAATGCCCCACCAGGGATCTCCCTCATC...CCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCTGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCTATGATGAATTACTCTaGTCTCGCCCTCACATCCCC +
Preference number: 4 (lower is better)
Translates to: RKHFIENSQRPVACRQQLYDELL*SRPHIP
Trigger: GGGGATGTGAGGGCGAGACCAGAGTAATTCATCATA...GAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR TCA 90 bp ATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCAATCTCCTCCATGATCTaGAGCATCTCTTTTTGCATG +
Preference number: 4 (lower is better)
Translates to: IPKDQWPAGNSSIRRCLAISSMI*SISFCM
Trigger: CATGCAAAAAGAGATGCTTCAGATCATGGAGGAGAT...TGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp TTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGAAGCTTCACCCACATACTGGATGCCTTaGTTGATCTCCTCCATGATC +
Preference number: 4 (lower is better)
Translates to: LASCFHKVPFVGRGEASPTYWMP*LISSMI
Trigger: GATCATGGAGGAGATCAAGCAAGGCATCCAGTATGT...GGGTGAAGCTTCCCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR GCA 90 bp CCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTTTTAAGCCCATCTCCTaGAGGTGTTTGTGCAGATGT +
Preference number: 4 (lower is better)
Translates to: PAGNSSIRRCLASCFHKVFKPIS*RCLCRC
Trigger: ACATCTGCACAAACACCTGCAGGAGATGGGCTTAAA...AACCTTGTGGAAACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp AGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGAAGTCTGGAACACATACTaGATGCCTTGCTTGATCTCC +
Preference number: 4 (lower is better)
Translates to: RRCLASCFHKVPFVGRGEVWNTY*MPCLIS
Trigger: GGAGATCAAGCAAGGCATCCAGTATGTGTTCCAGAC...TTCCCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp TTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGTGTGTAGAAGGAGACTaGCTTTGTCTTCCGGGAGTA +
Preference number: 4 (lower is better)
Translates to: FIENSQRPVACRQQLHQKCVEGD*LCLPGV
Trigger: TACTCCCGGAAGACAAAGCCAGTCTCCTTCTACACA...CTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CCA 90 bp CCTTGCACAGTCTTTTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCATAATCTCTTTTTGCATGTaGCCAATCATTCTCAGACTT +
Preference number: 4 (lower is better)
Translates to: PCTVFSFLLYSQPLQEGIISFCM*PIILRL
Trigger: AAGTCTGAGAATGATTGGCCACATGCAAAAAGAGAT...TATGCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 90 bp ACTGACAGGGGCTTGCTCAGGGCCTCTGGCGGTGGCACCAGCAGCTaGTACGAGCCCATGGTCCGGACCCAACCTGCCGCTCTGGAGCCC +
Preference number: 5 (lower is better)
Translates to: TDRGLLRASGGGTSS*YEPMVRTQPAALEP
Trigger: GGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 90 bp AGCCAGGTTGGAGGGCCCCGGACCCAACAGGAGCCTCGTAGGAACTaGCAGGGGCTTGCTCAGGGCCTCTGGCGGTGGCACCAGCAGCTG +
Preference number: 5 (lower is better)
Translates to: SQVGGPRTQQEPRRN*QGLAQGLWRWHQQL
Trigger: CAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGTTCCTACGAGGCTCCTGTTGGGTCCGGGGCCCTCCAACCTGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 90 bp TGCTCAGGGCCTCTGGCGGTGGCACCAGCAGCTGATACGAGCCCATaGTCCGGACCCAACCTGCCGCTCTGGAGCCCAGCGTCACACTGG +
Preference number: 5 (lower is better)
Translates to: CSGPLAVAPAADTSP*SGPNLPLWSPASHW
Trigger: CCAGTGTGACGCTGGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS GCA 90 bp CGGTGGCACCAGCAGCTGATACGAGCCCATGGTCCGGACCCAACCTaGCGCTCTGGAGCCCAGCGTCACACTGGCCTTGGCCAACATCCG +
Preference number: 5 (lower is better)
Translates to: RWHQQLIRAHGPDPT*RSGAQRHTGLGQHP
Trigger: CGGATGTTGGCCAAGGCCAGTGTGACGCTGGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 90 bp GGGCCTCCCTCAGGGCCTCGGCCACACGGTCCACATTCTCAGTGGTaGCGTTGTAGCCCAGGAGGCCAATCCGTAGCACCCTCTCCTCAG +
Preference number: 5 (lower is better)
Translates to: GPPSGPRPHGPHSQW*RCSPGGQSVAPSPQ
Trigger: CTGAGGAGAGGGTGCTACGGATTGGCCTCCTGGGCTACAACGCCACCACTGAGAATGTGGACCGTGTGGCCGAGGCCCTGAGGGAGGCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS GCA 90 bp TCCCCAGGCTCTAGGAGGTTGAACAGGGCAGTCTCCATGGCGCAGTaGCCTGAACCGCTGACAACCAGTGTGAGGGGGTTCCTGGTCTGG +
Preference number: 5 (lower is better)
Translates to: SPGSRRLNRAVSMAQ*PEPLTTSVRGFLVW
Trigger: CCAGACCAGGAACCCCCTCACACTGGTTGTCAGCGGTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGAGCCTGGGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp TTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGACACGGGGAGCCAGGTaGGAGGGCCCCGGACCCAAC +
Preference number: 5 (lower is better)
Translates to: FIENSQRPVACRQQLHQKTRGAR*EGPGPN
Trigger: GTTGGGTCCGGGGCCCTCCAACCTGGCTCCCCGTGT...CTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 90 bp GGCCCTCCTCCACCTCCTGCAGTGTATAATGTTCTCCAGGCTTCTTaGTCATCTGGTGCACACGGGCTCCAATGCGATCAGCAATCTCTG +
Preference number: 5 (lower is better)
Translates to: GPPPPPAVYNVLQAS*SSGAHGLQCDQQSL
Trigger: CAGAGATTGCTGATCGCATTGGAGCCCGTGTGCACCAGATGATCAAGAAGCCTGGAGAACATTATACACTGCAGGAGGTGGAGGAGGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp ATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGGGGAACTGACAGGGGCTaGCTCAGGGCCTCTGGCGGT +
Preference number: 5 (lower is better)
Translates to: IRRCLASCFHKVPFVGRGGTDRG*LRASGG
Trigger: ACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGTTCC...CCCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp CCTCGCAAGCACTTTATTGAAAATTCCCAAAGACCAGTGGCCTGCAGGCAACAGCCAGGCTCTAGGAGGTaGAACAGGGCAGTCTCCATG +
Preference number: 5 (lower is better)
Translates to: PRKHFIENSQRPVACRQQPGSRR*NRAVSM
Trigger: CATGGAGACTGCCCTGTTCAACCTCCTAGAGCCTGG...CTGTTGCCTGCAGGCCACTGGTCTTTGGGAATTTTCAATAAAGTGCTTGCGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp TTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCATAGTCTGGTGAGAGGATGTTCTCCAGGCTTCTaGATCATCTGGTGCACACGG +
Preference number: 5 (lower is better)
Translates to: FVLAIFPAPPGGHSLVRGCSPGF*IIWCTR
Trigger: CCGTGTGCACCAGATGATCAAGAAGCCTGGAGAACA...TCCTCTCACCAGACTATGCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp CCCAAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCCACATACTGGATGCCTaGCTTGATCTCCTCCATGAT +
Preference number: 5 (lower is better)
Translates to: PKDQWPAGNSSIRRCLASHILDA*LDLLHD
Trigger: ATCATGGAGGAGATCAAGCAAGGCATCCAGTATGTG...GGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp GCATCTTTGCTGGCTCTAGGCCTTGCACAGTCTTTTCGTTCTTGCTATATTCCCAACAGCAATACCGGTTaGTGTTGGGCCAGGCCCTCC +
Preference number: 5 (lower is better)
Translates to: ASLLALGLAQSFRSCYIPNSNTG*CWARPS
Trigger: GGAGGGCCTGGCCCAACACAAACCGGTATTGCTGTT...GGGAATATAGCAAGAACGAAAAGACTGTGCAAGGCCTAGAGCCAGCAAAGATGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp AGGCCTTGCACAGTCTTTTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCGATGTCAATGCCTTGTaGGTCCATGTAGATAGGAAC +
Preference number: 5 (lower is better)
Translates to: RPCTVFSFLLYSQPLQEGDVNAL*VHVDRN
Trigger: GTTCCTATCTACATGGACCAACAAGGCATTGACATC...GCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAAAAGACTGTGCAAGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 90 bp TTACTCTGGTCTCGCCCTCACATCCCCACAATTTGGCCAAGTATGTaGTGTCTGTGTAGAAGGAGACTGGCTTTGTCTTCCGGGAGTAGA +
Preference number: 5 (lower is better)
Translates to: LLWSRPHIPTIWPSM*CLCRRRLALSSGSR
Trigger: TCTACTCCCGGAAGACAAAGCCAGTCTCCTTCTACACAGACATCACATACTTGGCCAAATTGTGGGGATGTGAGGGCGAGACCAGAGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp TTCGTTCTTGCTATATTCCCAGCCCCTCCAGGAGGGCATAGTCTGGTGAGAGGACATGATGTCAATGCCTaGTTGGTCCATGTAGATAGG +
Preference number: 5 (lower is better)
Translates to: FVLAIFPAPPGGHSLVRGHDVNA*LVHVDR
Trigger: CCTATCTACATGGACCAACAAGGCATTGACATCATG...TCCTCTCACCAGACTATGCCCTCCTGGAGGGGCTGGGAATATAGCAAGAACGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 90 bp TCCCCACAATTTGGCCAAGTATGTGATGTCTGTGTAGAAGGAGACTaGCTTTGTCTTCCGGGAGTAGACCTTGTATTTGGCCTTGTCGTT +
Preference number: 5 (lower is better)
Translates to: SPQFGQVCDVCVEGD*LCLPGVDLVFGLVV
Trigger: AACGACAAGGCCAAATACAAGGTCTACTCCCGGAAGACAAAGCCAGTCTCCTTCTACACAGACATCACATACTTGGCCAAATTGTGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp AAAGACCAGTGGCCTGCAGGCAACAGCTCCATCAGAAGGTGTTTAGCATCCTGTCTGAAGCATCTCTTTTaGCATGTGGCCAATCATTCT +
Preference number: 5 (lower is better)
Translates to: KDQWPAGNSSIRRCLASCLKHLF*HVANHS
Trigger: AGAATGATTGGCCACATGCAAAAAGAGATGCTTCAG...ACAGGATGCTAAACACCTTCTGATGGAGCTGTTGCCTGCAGGCCACTGGTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 90 bp GTCTGGAACACATACTGGATGCCTTGCTTGATCTCCTCCATGATCTaGAGCATCTCTTTTTGCATGTGGCCAATCATTCTCAGACTTCCC +
Preference number: 5 (lower is better)
Translates to: VWNTYWMPCLISSMI*SISFCMWPIILRLP
Trigger: GGGAAGTCTGAGAATGATTGGCCACATGCAAAAAGAGATGCTTCAGATCATGGAGGAGATCAAGCAAGGCATCCAGTATGTGTTCCAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS-3UTR CAA 90 bp CATCAGAAGGTGTTTAGCATCCTGTTTCCACAAGGTTCCATTTGTAGGGAGAGGTATTTGGCCTTGTCGTaGAAGGAGATGAGGGAGATC +
Preference number: 5 (lower is better)
Translates to: HQKVFSILFPQGSICRERYLALS*KEMREI
Trigger: GATCTCCCTCATCTCCTTCAACGACAAGGCCAAATA...CCTCTCCCTACAAATGGAACCTTGTGGAAACAGGATGCTAAACACCTTCTGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp GGAGGGCCCCGGACCCAACAGGAGCCTCGTAGGAACTaGCAGGGGCTTGCTCAGGGCCTCTGGCGGTGGCAC +
Preference number: 6 (lower is better)
Translates to: GGPRTQQEPRRN*QGLAQGLWRWH
Trigger: GTGCCACCGCCAGAGGCCCTGAGCAAGCCCCTGTCAGTTCCTACGAGGCTCCTGTTGGGTCCGGGGCCCTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp CCTCTGGCGGTGGCACCAGCAGCTGATACGAGCCCATaGTCCGGACCCAACCTGCCGCTCTGGAGCCCAGCG +
Preference number: 6 (lower is better)
Translates to: PLAVAPAADTSP*SGPNLPLWSPA
Trigger: CGCTGGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACCGCCAGAGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp GGCTTGCTCAGGGCCTCTGGCGGTGGCACCAGCAGCTaGTACGAGCCCATGGTCCGGACCCAACCTGCCGCT +
Preference number: 6 (lower is better)
Translates to: GLLRASGGGTSS*YEPMVRTQPAA
Trigger: AGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTGGTGCCACCGCCAGAGGCCCTGAGCAAGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS GCA 72 bp CAGCAGCTGATACGAGCCCATGGTCCGGACCCAACCTaGCGCTCTGGAGCCCAGCGTCACACTGGCCTTGGC +
Preference number: 6 (lower is better)
Translates to: QQLIRAHGPDPT*RSGAQRHTGLG
Trigger: GCCAAGGCCAGTGTGACGCTGGGCTCCAGAGCGGCAGGTTGGGTCCGGACCATGGGCTCGTATCAGCTGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 90 bp CCAATCATTCTCAGACTTCCCGCCGCCAGCACACGGGGAGCCAGGTaGGAGGGCCCCGGACCCAACAGGAGCCTCGTAGGAACTGACAGG +
Preference number: 6 (lower is better)
Translates to: PIILRLPAASTRGAR*EGPGPNRSLVGTDR
Trigger: CCTGTCAGTTCCTACGAGGCTCCTGTTGGGTCCGGGGCCCTCCAACCTGGCTCCCCGTGTGCTGGCGGCGGGAAGTCTGAGAATGATTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp TCAGGGCCTCGGCCACACGGTCCACATTCTCAGTGGTaGCGTTGTAGCCCAGGAGGCCAATCCGTAGCACCC +
Preference number: 6 (lower is better)
Translates to: SGPRPHGPHSQW*RCSPGGQSVAP
Trigger: GGGTGCTACGGATTGGCCTCCTGGGCTACAACGCCACCACTGAGAATGTGGACCGTGTGGCCGAGGCCCTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp CCCTCAGGGCCTCGGCCACACGGTCCACATTCTCAGTaGTGGCGTTGTAGCCCAGGAGGCCAATCCGTAGCA +
Preference number: 6 (lower is better)
Translates to: PSGPRPHGPHSQ*WRCSPGGQSVA
Trigger: TGCTACGGATTGGCCTCCTGGGCTACAACGCCACCACTGAGAATGTGGACCGTGTGGCCGAGGCCCTGAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp GAGGTTGAACAGGGCAGTCTCCATGGCGCAGTGCCCTaGACCGCTGACAACCAGTGTGAGGGGGTTCCTGGT +
Preference number: 6 (lower is better)
Translates to: EVEQGSLHGAVP*TADNQCEGVPG
Trigger: ACCAGGAACCCCCTCACACTGGTTGTCAGCGGTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp GACGCCGCCAGCAATTCTCCAGGCCCTGCTCTGCAATaGGTGCCAGGCTCTCCCTCAGGCAGTATAAGCTGG +
Preference number: 6 (lower is better)
Translates to: DAASNSPGPALQ*VPGSPSGSISW
Trigger: CCAGCTTATACTGCCTGAGGGAGAGCCTGGCACTCATTGCAGAGCAGGGCCTGGAGAATTGCTGGCGGCGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS GCA 72 bp TCTAGGAGGTTGAACAGGGCAGTCTCCATGGCGCAGTaGCCTGAACCGCTGACAACCAGTGTGAGGGGGTTC +
Preference number: 6 (lower is better)
Translates to: SRRLNRAVSMAQ*PEPLTTSVRGF
Trigger: GAACCCCCTCACACTGGTTGTCAGCGGTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp CCCAGGGATGCCACTGAGTCCACCAGGAGTAGGCACTaGTACCTATGGCAGAGCTCCCCAAAACCATCCAGG +
Preference number: 6 (lower is better)
Translates to: PRDATESTRSRH*YLWQSSPKPSR
Trigger: CCTGGATGGTTTTGGGGAGCTCTGCCATAGGTACCAGTGCCTACTCCTGGTGGACTCAGTGGCATCCCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 90 bp ATGCCATTGGTTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGGAGGTaGAACAGGGCAGTCTCCATGGCGCAGTGCCCTGAACCGCTGACA +
Preference number: 6 (lower is better)
Translates to: MPLVPVRKESPGSRR*NRAVSMAQCPEPLT
Trigger: TGTCAGCGGTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGAGCCTGGGGACTCCTTTCTAACCGGAACCAATGGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp TTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGGAGGTTaGACAGGGCAGTCTCCATGGCGCAGTGCCCTGAAC +
Preference number: 6 (lower is better)
Translates to: FRLERSPQALGG*TGQSPWRSALN
Trigger: GTTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGAGCCTGGGGACTCCTTTCTAACCGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 72 bp GTTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGGAGGTaGAACAGGGCAGTCTCCATGGCGCAGTGCCCTGAA +
Preference number: 6 (lower is better)
Translates to: VPVRKESPGSRR*NRAVSMAQCPE
Trigger: TTCAGGGCACTGCGCCATGGAGACTGCCCTGTTCAACCTCCTAGAGCCTGGGGACTCCTTTCTAACCGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp CAGCAATCTCTGCAGCCCGCATTCCCCAGATGCCATTaGTTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGGA +
Preference number: 6 (lower is better)
Translates to: QQSLQPAFPRCH*FRLERSPQALG
Trigger: TCCTAGAGCCTGGGGACTCCTTTCTAACCGGAACCAATGGCATCTGGGGAATGCGGGCTGCAGAGATTGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 72 bp TCAGCAATCTCTGCAGCCCGCATTCCCCAGATGCCATaGGTTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGG +
Preference number: 6 (lower is better)
Translates to: SAISAARIPQMP*VPVRKESPGSR
Trigger: CCTAGAGCCTGGGGACTCCTTTCTAACCGGAACCAATGGCATCTGGGGAATGCGGGCTGCAGAGATTGCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 90 bp CCAATGCGATCAGCAATCTCTGCAGCCCGCATTCCCCAGATGCCATaGGTTCCGGTTAGAAAGGAGTCCCCAGGCTCTAGGAGGTTGAAC +
Preference number: 6 (lower is better)
Translates to: PMRSAISAARIPQMP*VPVRKESPGSRRLN
Trigger: GTTCAACCTCCTAGAGCCTGGGGACTCCTTTCTAACCGGAACCAATGGCATCTGGGGAATGCGGGCTGCAGAGATTGCTGATCGCATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp GAACCGCTGACAACCAGTGTGAGGGGGTTCCTGGTCTaGAACACATACTGGATGCCTTGCTTGATCTCCTCC +
Preference number: 6 (lower is better)
Translates to: EPLTTSVRGFLV*NTYWMPCLISS
Trigger: GGAGGAGATCAAGCAAGGCATCCAGTATGTGTTCCAGACCAGGAACCCCCTCACACTGGTTGTCAGCGGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp CCACCTCCTGCAGTGTATAATGTTCTCCAGGCTTCTTaGTCATCTGGTGCACACGGGCTCCAATGCGATCAG +
Preference number: 6 (lower is better)
Translates to: PPPAVYNVLQAS*SSGAHGLQCDQ
Trigger: CTGATCGCATTGGAGCCCGTGTGCACCAGATGATCAAGAAGCCTGGAGAACATTATACACTGCAGGAGGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 90 bp CTGGATGCCTTGCTTGATCTCCTCCATGATCTGAAGCATCTCTTTTaGCATGTGGCCAATCATTCTCAGACTTCCCGCCGCCAGCACACG +
Preference number: 6 (lower is better)
Translates to: LDALLDLLHDLKHLF*HVANHSQTSRRQHT
Trigger: CGTGTGCTGGCGGCGGGAAGTCTGAGAATGATTGGCCACATGCAAAAAGAGATGCTTCAGATCATGGAGGAGATCAAGCAAGGCATCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS GCA 72 bp TCCGGATCCTTCACAAAGAACTTTAAGCCCATCTCCTaGAGGTGTTTGTGCAGATGTGCTGTAGCCTCCCTG +
Preference number: 6 (lower is better)
Translates to: SGSFTKNFKPIS*RCLCRCAVASL
Trigger: CAGGGAGGCTACAGCACATCTGCACAAACACCTGCAGGAGATGGGCTTAAAGTTCTTTGTGAAGGATCCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 72 bp CTTCTGAGAGCTAGAGTACATGATGTCAATGCCTTGTaGGTCCATGTAGATAGGAACCCCGCCCAGGGATGC +
Preference number: 6 (lower is better)
Translates to: LLRARVHDVNAL*VHVDRNPAQGC
Trigger: GCATCCCTGGGCGGGGTTCCTATCTACATGGACCAACAAGGCATTGACATCATGTACTCTAGCTCTCAGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp TCTCGCCCTCACATCCCCACAATTTGGCCAAGTATGTaGTGTCTGTGTAGAAGGAGACTGGCTTTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: SRPHIPTIWPSM*CLCRRRLALSS
Trigger: GGAAGACAAAGCCAGTCTCCTTCTACACAGACATCACATACTTGGCCAAATTGTGGGGATGTGAGGGCGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CAA 72 bp TTGCTTGATCTCCTCCATGATCTGAAGCATCTCTTTTaGCATGTGGCCAATCATTCTCAGACTTCCCGCCGC +
Preference number: 6 (lower is better)
Translates to: LLDLLHDLKHLF*HVANHSQTSRR
Trigger: GCGGCGGGAAGTCTGAGAATGATTGGCCACATGCAAAAAGAGATGCTTCAGATCATGGAGGAGATCAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS CCA 72 bp TTTGGCCAAGTATGTGATGTCTGTGTAGAAGGAGACTaGCTTTGTCTTCCGGGAGTAGACCTTGTATTTGGC +
Preference number: 6 (lower is better)
Translates to: FGQVCDVCVEGD*LCLPGVDLVFG
Trigger: GCCAAATACAAGGTCTACTCCCGGAAGACAAAGCCAGTCTCCTTCTACACAGACATCACATACTTGGCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7
CDS TCA 72 bp ACATACTGGATGCCTTGCTTGATCTCCTCCATGATCTaGAGCATCTCTTTTTGCATGTGGCCAATCATTCTC +
Preference number: 6 (lower is better)
Translates to: TYWMPCLISSMI*SISFCMWPIIL
Trigger: GAGAATGATTGGCCACATGCAAAAAGAGATGCTTCAGATCATGGAGGAGATCAAGCAAGGCATCCAGTATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027491.7