Pregenerated sensors for AGTR1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049115Ensembl transcript IDs: ENSMUST00000066412.8, ENSMUST00000221743.2, ENSMUST00000222370.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATTGCGTGTCTaGCAGCAAACCGTTTTAAACCCACAAATCCATCCAGCTCCTGAC | + |
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Preference number: 1 (lower is better) Translates to: YLCVEIKRRPLRLRV*QQTVLNPQIHPAPD Trigger: GTCAGGAGCTGGATGGATTTGTGGGTTTAAAACGGTTTGCTGGCAGACACGCAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 90 bp | TGCCAGCAAACCGTTTTAAACCCACAAATCCATCCAGCTCCTGACTaGTCCTTGGGGCAGCCATCATCTATTAATGTAAGACAGCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: CQQTVLNPQIHPAPD*SLGQPSSINVRQLC Trigger: GCAAAGCTGTCTTACATTAATAGATGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATGGATTTGTGGGTTTAAAACGGTTTGCTGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 90 bp | GATCTTTTCAAAGTATGTGTAGTAACAGGGACACGTGGGTCTCCATaGCTAATGACTAAAGGGACAAACAAGGTTCCTTGCCCTTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: DLFKVCVVTGTRGSP*LMTKGTNKVPCPWG Trigger: TCCCCAAGGGCAAGGAACCTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTACACATACTTTGAAAAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTAAGTCCGATGCTGCCCTaGTTTCTGTCAGGGCATTAC | + |
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Preference number: 2 (lower is better) Translates to: FSQSFRQYLQSVERIFCLSPMLP*FLSGHY Trigger: GTAATGCCCTGACAGAAACCAGGGCAGCATCGGACT...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGGCATTGTTTGGGGACAGTACAGGTTTCTAAGACACTGGCTGAATTTTACACTCCTGACTTGTCCTTaGGGCAGCCATCATCTATTA | + |
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Preference number: 2 (lower is better) Translates to: TGIVWGQYRFLRHWLNFTLLTCP*GSHHLL Trigger: TAATAGATGATGGCTGCCCCAAGGACAAGTCAGGAG...TGTAAAATTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CCA 90 bp | TTCAAAGTATGTGTAGTAACAGGGACACGTGGGTCTCCATTGCTAATGACTAAAAAGGTTCCTTGCCCTTaGGGAACTGAGCAGAACAAG | + |
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Preference number: 2 (lower is better) Translates to: FKVCVVTGTRGSPLLMTKKVPCP*GTEQNK Trigger: CTTGTTCTGCTCAGTTCCCCAAGGGCAAGGAACCTT...TTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTACACATACTTTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 90 bp | CAAACCGTTTTAAACCCACAAATCCATCCAGCTCCTGACTTGTCCTaGGGGCAGCCATCATCTATTAATGTAAGACAGCTTTGCATAATT | + |
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Preference number: 2 (lower is better) Translates to: QTVLNPQIHPAPDLS*GQPSSINVRQLCII Trigger: AATTATGCAAAGCTGTCTTACATTAATAGATGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATGGATTTGTGGGTTTAAAACGGTTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGGCATTGTTTGGGGACAGTACAGGTTTCTAAGACACTGGCTGAATTTTACACTACATACCTATGTGTaGAAATCAAAAGGAGACCGC | + |
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Preference number: 2 (lower is better) Translates to: TGIVWGQYRFLRHWLNFTLHTYV*KSKGDR Trigger: GCGGTCTCCTTTTGATTTCCACACATAGGTATGTAG...TGTAAAATTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR TCA 90 bp | ACTGGCATTGTTTGGGGACAGTACAGGTTTCTAAGACACTGGCTGAATTTTACAATATCTACAGTCTGTTaGACGCATTTTCTGCTTAGA | + |
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Preference number: 2 (lower is better) Translates to: TGIVWGQYRFLRHWLNFTISTVC*THFLLR Trigger: TCTAAGCAGAAAATGCGTTCAACAGACTGTAGATAT...TGTAAAATTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGCAGATTGTATGATATGTAGTCTATTCACCACCGACTGTTTATGTTTCTCATTTACAAAGGGCTCCTaGAACTTGATGACTCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: KADCMICSLFTTDCLCFSFTKGS*NLMTPG Trigger: ACCTGGAGTCATCAAGTTTCAGGAGCCCTTTGTAAA...TGAGAAACATAAACAGTCGGTGGTGAATAGACTACATATCATACAATCTGCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CAA 90 bp | ACACGTGGGTCTCCATTGCTAATGACTAAAGGGACAAACAAGGTTCCTTGCCCTCATCCAGCTCCTGACTaGTCCTTGGGGCAGCCATCA | + |
|
Preference number: 3 (lower is better) Translates to: TRGSPLLMTKGTNKVPCPHPAPD*SLGQPS Trigger: TGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATG...AGGGCAAGGAACCTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CCA 72 bp | TCCTTTGGTCGTGAGCCATTTAGTCCGATGCTGCCCTaGTTTCTGTCAGGGCATTACATTGCCAGCAAGCTT | + |
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Preference number: 3 (lower is better) Translates to: SFGREPFSPMLP*FLSGHYIASKL Trigger: AAGCTTGCTGGCAATGTAATGCCCTGACAGAAACCAGGGCAGCATCGGACTAAATGGCTCACGACCAAAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CCA 72 bp | CACTGCTACATAAATACACCACTAACTGGCATTGTTTaGGGACAGTACAGGTTTCTAAGACACTGGCTGAAT | + |
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Preference number: 3 (lower is better) Translates to: HCYINTPLTGIV*GQYRFLRHWLN Trigger: ATTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGTTAGTGGTGTATTTATGTAGCAGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR-3UTR CAA 90 bp | TACTTCTTCAAAGCTTTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAATGTCAGGGCATTACATaGCCAGCAAGCTTTGAACCT | + |
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Preference number: 3 (lower is better) Translates to: YFFKAFSQSFRQYLQSVECQGIT*PASFEP Trigger: AGGTTCAAAGCTTGCTGGCAATGTAATGCCCTGACA...TTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAAAGCTTTGAAGAAGTA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR TCA 72 bp | CCTACTATGTCACGGTTGGTACAAGCAGTGCAACTTTaGTGTGTAACTTTGCTTACACTGCTACATAAATAC | + |
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Preference number: 3 (lower is better) Translates to: PTMSRLVQAVQL*CVTLLTLLHKY Trigger: GTATTTATGTAGCAGTGTAAGCAAAGTTACACATCAAAGTTGCACTGCTTGTACCAACCGTGACATAGTAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR TCA 72 bp | GTCTATTCACCACCGACTGTTTATGTTTCTCAGATGTaGACTAAAGCTGATATACCTACTATGTCACGGTTG | + |
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Preference number: 3 (lower is better) Translates to: VYSPPTVYVSQM*TKADIPTMSRL Trigger: CAACCGTGACATAGTAGGTATATCAGCTTTAGTTCACATCTGAGAAACATAAACAGTCGGTGGTGAATAGAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CCA 72 bp | ACTTTGCTTACACTGCTACATAAATACACCACTAACTaGCATTGTTTGGGGACAGTACAGGTTTCTAAGACA | + |
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Preference number: 3 (lower is better) Translates to: TLLTLLHKYTTN*HCLGTVQVSKT Trigger: TGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGTTAGTGGTGTATTTATGTAGCAGTGTAAGCAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR GCA 90 bp | TTAAACCCACAAATCCATCCAGCTCCTGACTTGTCCTTGGGGCAGCCATCATCTATATGTAACTGTGCCTaGCAGCCCTGGGGCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: LNPQIHPAPDLSLGQPSSICNCA*QPWGSH Trigger: ATGACTGCCCCAGGGCTGGCAGGCACAGTTACATAT...AGATGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATGGATTTGTGGGTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | GTAGTAACAGGGACACGTGGGTCTCCATTGCTAATGACTAAAGGGACAAACAAGACACATTTCGGTGGATaGCGGCTGGCAAACTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VVTGTRGSPLLMTKGTNKTHFGG*RLANWP Trigger: TGGCCAGTTTGCCAGCCGTCATCCACCGAAATGTGT...CTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | CATGCTACATACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATTGCGTGTCAGCCCAGGATGTTCTTaGTTAGGCCCAGTCCTATGG | + |
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Preference number: 4 (lower is better) Translates to: HATYLCVEIKRRPLRLRVSPGCS*LGPVLW Trigger: CCATAGGACTGGGCCTAACCAAGAACATCCTGGGCT...GACACGCAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTATGTAGCATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTATCGGTGGATGACGGCTaGCAAACTGGCCAAGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLSVDDG*QTGQAS Trigger: GCTGGCTTGGCCAGTTTGCCAGCCGTCATCCACCGA...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTAGCGATCTTACATAGGTaGTTGCCGAAGGGCCAGCGG | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLAILHR*LPKGQR Trigger: CCGCTGGCCCTTCGGCAATCACCTATGTAAGATCGC...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR GCA 90 bp | AAAGGGCTCCTGAAACTTGATGACTCCAGGTTAGCAGATCTTTTCAAAGTATGTGTAGACAGGCTTGAGTaGGACTTGGCCTTTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: KGLLKLDDSRLADLFKVCVDRLE*DLAFGG Trigger: TCCCCCAAAGGCCAAGTCGCACTCAAGCCTGTCTAC...ACATACTTTGAAAAGATCTGCTAACCTGGAGTCATCAAGTTTCAGGAGCCCTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 72 bp | TACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATaGCGTGTCTGCCAGCAAACCGTTTTAAACCCACAA | + |
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Preference number: 4 (lower is better) Translates to: YLCVEIKRRPLR*RVCQQTVLNPQ Trigger: TTGTGGGTTTAAAACGGTTTGCTGGCAGACACGCAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | CATGCTACATACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATTGCGTGTCTTAGAAGAAAGACACTaGCCACAGTCTTCAGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: HATYLCVEIKRRPLRLRVLEERH*PQSSAS Trigger: TGAAGCTGAAGACTGTGGCCAGTGTCTTTCTTCTAA...GACACGCAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTATGTAGCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | TTAGCACATGCTACATACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATTGGTGCGACTTGGCCTTTaGGGGAATATATTTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LAHATYLCVEIKRRPLRLVRLGL*GNIFQE Trigger: CTCCTGAAATATATTCCCCCAAAGGCCAAGTCGCAC...CAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTATGTAGCATGTGCTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | TTAGCACATGCTACATACCTATGTGTGGAAATCAAAAGGAGACCGCTGCGATTGGGCTTGAGTGCGACTTaGCCTTTGGGGGAATATATT | + |
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Preference number: 4 (lower is better) Translates to: LAHATYLCVEIKRRPLRLGLSAT*PLGEYI Trigger: AATATATTCCCCCAAAGGCCAAGTCGCACTCAAGCC...CAATCGCAGCGGTCTCCTTTTGATTTCCACACATAGGTATGTAGCATGTGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | CTTGCCCTTGGGGAACTGAGCAGAACAAGTAACCTCGACTTCCATTTCTTGTTTTCATGTAAAAGTAGATaGCGATCACCACCAAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LALGELSRTSNLDFHFLFSCKSR*RSPPSC Trigger: ACAGCTTGGTGGTGATCGTCATCTACTTTTACATGA...AAACAAGAAATGGAAGTCGAGGTTACTTGTTCTGCTCAGTTCCCCAAGGGCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTATGGATGACGCCCAGCTaGATCAGCACATCCAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLWMTPS*ISTSRN Trigger: ATTCCTGGATGTGCTGATTCAGCTGGGCGTCATCCA...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | AAGGCAGATTGTATGATATGTAGTCTATTCACCACCGACTGTTTATGTTTCTCATGTGCCTGCCAGCCCTaGGGCAGTCATCTTGAATTC | + |
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Preference number: 4 (lower is better) Translates to: KADCMICSLFTTDCLCFSCACQP*GSHLEF Trigger: GAATTCAAGATGACTGCCCCAGGGCTGGCAGGCACA...TGAGAAACATAAACAGTCGGTGGTGAATAGACTACATATCATACAATCTGCCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 72 bp | TTAAACCCACAAATCCATCCAGCTCCTGACTTGTCCTaGGGGCAGCCATCATCTATTAATGTAAGACAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LNPQIHPAPDLS*GQPSSINVRQL Trigger: AAGCTGTCTTACATTAATAGATGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATGGATTTGTGGGTTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 72 bp | ACCGTTTTAAACCCACAAATCCATCCAGCTCCTGACTaGTCCTTGGGGCAGCCATCATCTATTAATGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: TVLNPQIHPAPD*SLGQPSSINVR Trigger: TCTTACATTAATAGATGATGGCTGCCCCAAGGACAAGTCAGGAGCTGGATGGATTTGTGGGTTTAAAACGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 72 bp | AAAGTATGTGTAGTAACAGGGACACGTGGGTCTCCATaGCTAATGACTAAAGGGACAAACAAGGTTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: KVCVVTGTRGSP*LMTKGTNKVPC Trigger: GCAAGGAACCTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTACACATACTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CCA 90 bp | ACTGGCATTGTTTGGGGACAGTACAGGTTTCTAAGACACTGGCTGAATTTTACAAATGTGAATATTTGGTaGGGGACCCAGGAGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: TGIVWGQYRFLRHWLNFTNVNIW*GTQEKK Trigger: CTTCTTCTCCTGGGTCCCCCACCAAATATTCACATT...TGTAAAATTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| 3UTR CAA 72 bp | ACACTGCTACATAAATACACCACTAACTGGCATTGTTaGGGGACAGTACAGGTTTCTAAGACACTGGCTGAA | + |
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Preference number: 4 (lower is better) Translates to: TLLHKYTTNWHC*GTVQVSKTLAE Trigger: TTCAGCCAGTGTCTTAGAAACCTGTACTGTCCCCAAACAATGCCAGTTAGTGGTGTATTTATGTAGCAGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR GCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTATCTTACATAGGTGATTaGCGAAGGGCCAGCGGTATT | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLSYIGD*RRASGI Trigger: AATACCGCTGGCCCTTCGGCAATCACCTATGTAAGA...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTACTGGGGCAGTCATCTTaGATTCTTTTGATGCCATCT | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLLGQSS*ILLMPS Trigger: AGATGGCATCAAAAGAATTCAAGATGACTGCCCCAG...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR TCA 90 bp | TTCTCTCAGAGCTTCAGACAATATCTACAGTCTGTTGAACGCATTTTCTGCTTATATTGGTGTTCTCAATaGAATACACATTTCGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: FSQSFRQYLQSVERIFCLYWCSQ*NTHFGG Trigger: TCCACCGAAATGTGTATTTCATTGAGAACACCAATA...TAAGCAGAAAATGCGTTCAACAGACTGTAGATATTGTCTGAAGCTCTGAGAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS TCA 90 bp | GTGTCCACGATGTCGGCAATTTTACAGTCATGGATGACGCCCAGCTaGATCAGCACATCCAGGAATGTGAATATTTGGTGGGGGACCCAG | + |
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Preference number: 5 (lower is better) Translates to: VSTMSAILQSWMTPS*ISTSRNVNIWWGTQ Trigger: CTGGGTCCCCCACCAAATATTCACATTCCTGGATGTGCTGATTCAGCTGGGCGTCATCCATGACTGTAAAATTGCCGACATCGTGGACAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | GTAGTAACAGGGACACGTGGGTCTCCATTGCTAATGACTAAAGGGACAAACAAGATGATGCAGGTGACTTaGGCCACCAGCATCGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: VVTGTRGSPLLMTKGTNKMMQVT*ATSIVR Trigger: CCGCACGATGCTGGTGGCCAAAGTCACCTGCATCAT...CTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CCA 90 bp | GCGCAAACAGTGATATTGGTGTTCTCAATGAAATACACATTTCGGTaGATGACGGCTGGCAAACTGGCCAAGCCAGCCATCAGCCAGATG | + |
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Preference number: 5 (lower is better) Translates to: AQTVILVFSMKYTFR*MTAGKLAKPAISQM Trigger: CATCTGGCTGATGGCTGGCTTGGCCAGTTTGCCAGCCGTCATCCACCGAAATGTGTATTTCATTGAGAACACCAATATCACTGTTTGCGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CCA 90 bp | GATATTGGTGTTCTCAATGAAATACACATTTCGGTGGATGACGGCTaGCAAACTGGCCAAGCCAGCCATCAGCCAGATGATGATGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: DIGVLNEIHISVDDG*QTGQASHQPDDDAG Trigger: ACCTGCATCATCATCTGGCTGATGGCTGGCTTGGCCAGTTTGCCAGCCGTCATCCACCGAAATGTGTATTTCATTGAGAACACCAATATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | GTAGTAACAGGGACACGTGGGTCTCCATTGCTAATGACTAAAGGGACAAACAAGAGGCTTGAGTGCGACTaGGCCTTTGGGGGAATATAT | + |
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Preference number: 5 (lower is better) Translates to: VVTGTRGSPLLMTKGTNKRLECD*AFGGIY Trigger: ATATATTCCCCCAAAGGCCAAGTCGCACTCAAGCCT...CTTGTTTGTCCCTTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | AAAGGGCTCCTGAAACTTGATGACTCCAGGTTAGCAGATCTTTTCAAAGTATGTCAGGAATGTGAATATTaGGTGGGGGACCCAGGAGAA | + |
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Preference number: 5 (lower is better) Translates to: KGLLKLDDSRLADLFKVCQECEY*VGDPGE Trigger: TTCTCCTGGGTCCCCCACCAAATATTCACATTCCTG...ACATACTTTGAAAAGATCTGCTAACCTGGAGTCATCAAGTTTCAGGAGCCCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS TCA 90 bp | GAAGAAAGACACTGGCCACAGTCTTCAGCTTCATGTAAAAGTAGATaGCGATCACCACCAAGCTGTTTCCAAATATTCCCACCACAAAGA | + |
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Preference number: 5 (lower is better) Translates to: EERHWPQSSASCKSR*RSPPSCFQIFPPQR Trigger: TCTTTGTGGTGGGAATATTTGGAAACAGCTTGGTGGTGATCGTCATCTACTTTTACATGAAGCTGAAGACTGTGGCCAGTGTCTTTCTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | TTCAAAGTATGTGTAGTAACAGGGACACGTGGGTCTCCATTGCTAATGACTAAACCTGGGGCAGTCATCTaGAATTCTTTTGATGCCATC | + |
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Preference number: 5 (lower is better) Translates to: FKVCVVTGTRGSPLLMTKPGAVI*NSFDAI Trigger: GATGGCATCAAAAGAATTCAAGATGACTGCCCCAGG...TTTAGTCATTAGCAATGGAGACCCACGTGTCCCTGTTACTACACATACTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | TTGCATAATTACTTCTTCAAAGCTTTCTCTCAGAGCTTCAGACAATATCTACAGAGTGCGACTTGGCCTTaGGGGGAATATATTTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LHNYFFKAFSQSFRQYLQSATWP*GEYISG Trigger: TCCTGAAATATATTCCCCCAAAGGCCAAGTCGCACT...CTGTAGATATTGTCTGAAGCTCTGAGAGAAAGCTTTGAAGAAGTAATTATGCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS-3UTR CAA 90 bp | TTGCATAATTACTTCTTCAAAGCTTTCTCTCAGAGCTTCAGACAATATCTACAGAGAGGGTTCAGGCAGTaGTTAAAATACGCTATGCAG | + |
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Preference number: 5 (lower is better) Translates to: LHNYFFKAFSQSFRQYLQRGFRQ*LKYAMQ Trigger: CTGCATAGCGTATTTTAACAACTGCCTGAACCCTCT...CTGTAGATATTGTCTGAAGCTCTGAGAGAAAGCTTTGAAGAAGTAATTATGCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 90 bp | AAACTGGCCAAGCCAGCCATCAGCCAGATGATGATGCAGGTGACTTaGGCCACCAGCATCGTGCGGCGGAGGCGAGACTTCATCGGGTGG | + |
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Preference number: 6 (lower is better) Translates to: KLAKPAISQMMMQVT*ATSIVRRRRDFIGW Trigger: CCACCCGATGAAGTCTCGCCTCCGCCGCACGATGCTGGTGGCCAAAGTCACCTGCATCATCATCTGGCTGATGGCTGGCTTGGCCAGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS TCA 72 bp | TTGAAACTGACGCTGGCCGAAGCGATCTTACATAGGTaGTTGCCGAAGGGCCAGCGGTATTCCATAGCGGTA | + |
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Preference number: 6 (lower is better) Translates to: LKLTLAEAILHR*LPKGQRYSIAV Trigger: TACCGCTATGGAATACCGCTGGCCCTTCGGCAATCACCTATGTAAGATCGCTTCGGCCAGCGTCAGTTTCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS TCA 72 bp | GCGGTAGGAGAGCGTGCTCATTTTCGTAGACAGGCTTaGGTGCGACTTGGCCTTTGGGGGAATATATTTCAG | + |
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Preference number: 6 (lower is better) Translates to: AVGERAHFRRQA*VRLGLWGNIFQ Trigger: CTGAAATATATTCCCCCAAAGGCCAAGTCGCACTCAAGCCTGTCTACGAAAATGAGCACGCTCTCCTACCGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 72 bp | AGCGTGCTCATTTTCGTAGACAGGCTTGAGTGCGACTaGGCCTTTGGGGGAATATATTTCAGGAGCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: SVLIFVDRLECD*AFGGIYFRSWR Trigger: CCTCCAGCTCCTGAAATATATTCCCCCAAAGGCCAAGTCGCACTCAAGCCTGTCTACGAAAATGAGCACGCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CCA 72 bp | GTTCTCAATGAAATACACATTTCGGTGGATGACGGCTaGCAAACTGGCCAAGCCAGCCATCAGCCAGATGAT | + |
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Preference number: 6 (lower is better) Translates to: VLNEIHISVDDG*QTGQASHQPDD Trigger: ATCATCTGGCTGATGGCTGGCTTGGCCAGTTTGCCAGCCGTCATCCACCGAAATGTGTATTTCATTGAGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 72 bp | ATGATTAGGAAAGGGAACAGGAAGCCCAGGATGTTCTaGGTTAGGCCCAGTCCTATGGGGAGCGTTGAATTC | + |
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Preference number: 6 (lower is better) Translates to: MIRKGNRKPRMF*VRPSPMGSVEF Trigger: GAATTCAACGCTCCCCATAGGACTGGGCCTAACCAAGAACATCCTGGGCTTCCTGTTCCCTTTCCTAATCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 90 bp | ATGGATGACGCCCAGCTGAATCAGCACATCCAGGAATGTGAATATTaGGTGGGGGACCCAGGAGAAGAAGAAGAAAAGCACAATCGCCAT | + |
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Preference number: 6 (lower is better) Translates to: MDDAQLNQHIQECEY*VGDPGEEEEKHNRH Trigger: ATGGCGATTGTGCTTTTCTTCTTCTTCTCCTGGGTCCCCCACCAAATATTCACATTCCTGGATGTGCTGATTCAGCTGGGCGTCATCCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CCA 72 bp | GTGATATTGGTGTTCTCAATGAAATACACATTTCGGTaGATGACGGCTGGCAAACTGGCCAAGCCAGCCATC | + |
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Preference number: 6 (lower is better) Translates to: VILVFSMKYTFR*MTAGKLAKPAI Trigger: GATGGCTGGCTTGGCCAGTTTGCCAGCCGTCATCCACCGAAATGTGTATTTCATTGAGAACACCAATATCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 90 bp | CATGACAAATATGTAACTGTGCCTGCCAGCCCTGGGGCAGTCATCTaGAATTCTTTTGATGCCATCTTCAGTAGAAGAGTTAAGGGCCAT | + |
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Preference number: 6 (lower is better) Translates to: HDKYVTVPASPGAVI*NSFDAIFSRRVKGH Trigger: ATGGCCCTTAACTCTTCTACTGAAGATGGCATCAAAAGAATTCAAGATGACTGCCCCAGGGCTGGCAGGCACAGTTACATATTTGTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000066412.8 ENSMUST00000221743.2 ENSMUST00000222370.2 |
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| CDS TCA 72 bp | ATGTCGGCAATTTTACAGTCATGGATGACGCCCAGCTaGATCAGCACATCCAGGAATGTGAATATTTGGTGG | + |
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Preference number: 6 (lower is better) Translates to: MSAILQSWMTPS*ISTSRNVNIWW Trigger: CCACCAAATATTCACATTCCTGGATGTGCTGATTCAGCTGGGCGTCATCCATGACTGTAAAATTGCCGACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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| CDS CAA 72 bp | TATGTAACTGTGCCTGCCAGCCCTGGGGCAGTCATCTaGAATTCTTTTGATGCCATCTTCAGTAGAAGAGTT | + |
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Preference number: 6 (lower is better) Translates to: YVTVPASPGAVI*NSFDAIFSRRV Trigger: AACTCTTCTACTGAAGATGGCATCAAAAGAATTCAAGATGACTGCCCCAGGGCTGGCAGGCACAGTTACATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000066412.8 ENSMUST00000221743.2 ENSMUST00000222370.2 |
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| CDS TCA 72 bp | CACTGGCCACAGTCTTCAGCTTCATGTAAAAGTAGATaGCGATCACCACCAAGCTGTTTCCAAATATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: HWPQSSASCKSR*RSPPSCFQIFP Trigger: TGGGAATATTTGGAAACAGCTTGGTGGTGATCGTCATCTACTTTTACATGAAGCTGAAGACTGTGGCCAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000066412.8 |
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