Pregenerated sensors for AGRP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005705Ensembl transcript IDs: ENSMUST00000005849.11, ENSMUST00000194091.6, ENSMUST00000194654.2
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGCCTGGTCAGGCCTTCTaGTGCCCTTCAGTGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: TVPSFILIPCLCPNNIHWPGQAF*CPSVEP Trigger: TGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGG...CCAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR CCA 90 bp | AACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGTCTGGACCCCCAGTGTaGGAGGCAGTGCCAACAGCA | + |
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Preference number: 4 (lower is better) Translates to: NRPILYSHPLPLPKQHPLSGPPV*EAVPTA Trigger: TGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGA...CAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR CCA 90 bp | ACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGTCTGATGCCCTTCAGTaGAGCCACGCCCATCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: TVPSFILIPCLCPNNIHWSDALQ*SHAHLD Trigger: GTCCAGATGGGCGTGGCTCCACTGAAGGGCATCAGA...CCAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR CCA 90 bp | AACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGACTACAGAGGTTCGTaGCCGTACCCAGCTTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: NRPILYSHPLPLPKQHPLDYRGS*PYPACG Trigger: GCCGCAAGCTGGGTACGGCCACGAACCTCTGTAGTC...CAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR TCA 90 bp | TTAAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCACCTGGTCAGGCCTTCTaGTGCCCTTCAGTGGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: LNRPILYSHPLPLPKQHPPGQAF*CPSVEP Trigger: TGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGG...TGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR CCA 90 bp | TTAAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATCTGGACCCCCAGTGTaGGAGGCAGTGCCAACAGCA | + |
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Preference number: 4 (lower is better) Translates to: LNRPILYSHPLPLPKQHPSGPPV*EAVPTA Trigger: TGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGA...TGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | ACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGCAGTGTGGGAGGCAGTaGCAACAGCAGAACACAACT | + |
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Preference number: 4 (lower is better) Translates to: TVPSFILIPCLCPNNIHWQCGRQ*QQQNTT Trigger: AGTTGTGTTCTGCTGTTGGCACTGCCTCCCACACTG...CCAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | ACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGCTCCGCCAAAGCTTCTaGCTTCTGCAGCAGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: TVPSFILIPCLCPNNIHWLRQSF*LLQQNF Trigger: GAAGTTCTGCTGCAGAAGGCAGAAGCTTTGGCGGAG...CCAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | AACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGTGGCCGTACCCAGCTTaGGGCAGTAGCAAAAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: NRPILYSHPLPLPKQHPLWPYPA*GSSKRH Trigger: ATGCCTTTTGCTACTGCCGCAAGCTGGGTACGGCCA...CAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR CCA 90 bp | TTAAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATCTGATGCCCTTCAGTaGAGCCACGCCCATCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: LNRPILYSHPLPLPKQHPSDALQ*SHAHLD Trigger: GTCCAGATGGGCGTGGCTCCACTGAAGGGCATCAGA...TGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | AACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGCAGTGTGGGAGGCAGTaGCAACAGCAGAACACAACT | + |
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Preference number: 4 (lower is better) Translates to: NRPILYSHPLPLPKQHPLQCGRQ*QQQNTT Trigger: AGTTGTGTTCTGCTGTTGGCACTGCCTCCCACACTG...CAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | ACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGGTTCTTCTGCTCGGTCTaGAGTTGTCTTCTTGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TVPSFILIPCLCPNNIHWFFCSV*SCLLEA Trigger: GGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAA...CCAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | TTAAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATGGCCGTACCCAGCTTaGGGCAGTAGCAAAAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: LNRPILYSHPLPLPKQHPWPYPA*GSSKRH Trigger: ATGCCTTTTGCTACTGCCGCAAGCTGGGTACGGCCA...TGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | AAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTCTCCGCCAAAGCTTCTaGCTTCTGCAGCAGAACTTC | + |
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Preference number: 4 (lower is better) Translates to: KPSHPLFSSPAFAQTTSILRQSF*LLQQNF Trigger: GAAGTTCTGCTGCAGAAGGCAGAAGCTTTGGCGGAG...AATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | AAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTTTCTTCTGCTCGGTCTaGAGTTGTCTTCTTGAGGCC | + |
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Preference number: 4 (lower is better) Translates to: KPSHPLFSSPAFAQTTSIFFCSV*SCLLEA Trigger: GGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAA...AATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS-3UTR GCA 90 bp | AAACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTAAAGCTTCTGCCTTCTaGAGCAGAACTTCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: KPSHPLFSSPAFAQTTSIKASAF*SRTSSA Trigger: AGCAGAAGAAGTTCTGCTGCAGAAGGCAGAAGCTTT...AATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS GCA 90 bp | GCGCACGGGTCGCAGCAAGGTACCTGCTGTCCCAAGCAGGACTCGTaGAGCCTTACACAGCGACGCGGAGAACGAGACTCGCGGTTCTGT | + |
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Preference number: 5 (lower is better) Translates to: AHGSQQGTCCPKQDS*SLTQRRGERDSRFC Trigger: ACAGAACCGCGAGTCTCGTTCTCCGCGTCGCTGTGTAAGGCTGCACGAGTCCTGCTTGGGACAGCAGGTACCTTGCTGCGACCCGTGCGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS CCA 90 bp | GCCTGGTCAGGCCTTCTGATGCCCTTCAGTGGAGCCACGCCCATCTaGACCCCCAGTGTGGGAGGCAGTGCCAACAGCAGAACACAACTC | + |
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Preference number: 5 (lower is better) Translates to: AWSGLLMPFSGATPI*TPSVGGSANSRTQL Trigger: GAGTTGTGTTCTGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGATGGGCGTGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS TCA 90 bp | GACTTAGACCTGGGAACTCTGGGAACAGAGCCTGGTCAGGCCTTCTaGTGCCCTTCAGTGGAGCCACGCCCATCTGGACCCCCAGTGTGG | + |
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Preference number: 5 (lower is better) Translates to: DLDLGTLGTEPGQAF*CPSVEPRPSGPPVW Trigger: CCACACTGGGGGTCCAGATGGGCGTGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS CCA 90 bp | TTGAGGCCATTCAGACTTAGACCTGGGAACTCTGGGAACAGAGCCTaGTCAGGCCTTCTGATGCCCTTCAGTGGAGCCACGCCCATCTGG | + |
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Preference number: 5 (lower is better) Translates to: LRPFRLRPGNSGNRA*SGLLMPFSGATPIW Trigger: CCAGATGGGCGTGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTCTGAATGGCCTCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS GCA 90 bp | TCGCGGTTCTGTGGATCTAGCACCTCCGCCAAAGCTTCTGCCTTCTaGAGCAGAACTTCTTCTGCTCGGTCTGCAGTTGTCTTCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: SRFCGSSTSAKASAF*SRTSSARSAVVFLR Trigger: CCTCAAGAAGACAACTGCAGACCGAGCAGAAGAAGTTCTGCTGCAGAAGGCAGAAGCTTTGGCGGAGGTGCTAGATCCACAGAACCGCGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS TCA 90 bp | CCTTCTGCAGCAGAACTTCTTCTGCTCGGTCTGCAGTTGTCTTCTTaGGGCCATTCAGACTTAGACCTGGGAACTCTGGGAACAGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: PSAAELLLLGLQLSS*GHSDLDLGTLGTEP Trigger: AGGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTCTGAATGGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAAGTTCTGCTGCAGAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS-3UTR CAA 90 bp | AACCGTCCCATCCTTTATTCTCATCCCCTGCCTTTGCCCAAACAACATCCATTGTCTGCAGTTGTCTTCTaGAGGCCATTCAGACTTAGA | + |
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Preference number: 5 (lower is better) Translates to: NRPILYSHPLPLPKQHPLSAVVF*RPFRLR Trigger: TCTAAGTCTGAATGGCCTCAAGAAGACAACTGCAGA...CAATGGATGTTGTTTGGGCAAAGGCAGGGGATGAGAATAAAGGATGGGACGGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 |
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| CDS CCA 72 bp | GGCCTTCTGATGCCCTTCAGTGGAGCCACGCCCATCTaGACCCCCAGTGTGGGAGGCAGTGCCAACAGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GLLMPFSGATPI*TPSVGGSANSR Trigger: TCTGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGATGGGCGTGGCTCCACTGAAGGGCATCAGAAGGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS GCA 72 bp | TCGCAGCAAGGTACCTGCTGTCCCAAGCAGGACTCGTaGAGCCTTACACAGCGACGCGGAGAACGAGACTCG | + |
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Preference number: 6 (lower is better) Translates to: SQQGTCCPKQDS*SLTQRRGERDS Trigger: CGAGTCTCGTTCTCCGCGTCGCTGTGTAAGGCTGCACGAGTCCTGCTTGGGACAGCAGGTACCTTGCTGCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS GCA 72 bp | AGCCACGCCCATCTGGACCCCCAGTGTGGGAGGCAGTaGCAACAGCAGAACACAACTCAGCAACATTGCAGT | + |
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Preference number: 6 (lower is better) Translates to: SHAHLDPQCGRQ*QQQNTTQQHCS Trigger: ACTGCAATGTTGCTGAGTTGTGTTCTGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGATGGGCGTGGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS CCA 72 bp | TTCAGACTTAGACCTGGGAACTCTGGGAACAGAGCCTaGTCAGGCCTTCTGATGCCCTTCAGTGGAGCCACG | + |
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Preference number: 6 (lower is better) Translates to: FRLRPGNSGNRA*SGLLMPFSGAT Trigger: CGTGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTCTGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS GCA 72 bp | TGTGGATCTAGCACCTCCGCCAAAGCTTCTGCCTTCTaGAGCAGAACTTCTTCTGCTCGGTCTGCAGTTGTC | + |
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Preference number: 6 (lower is better) Translates to: CGSSTSAKASAF*SRTSSARSAVV Trigger: GACAACTGCAGACCGAGCAGAAGAAGTTCTGCTGCAGAAGGCAGAAGCTTTGGCGGAGGTGCTAGATCCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS CAA 90 bp | GCCTTCTGCAGCAGAACTTCTTCTGCTCGGTCTGCAGTTGTCTTCTaGAGGCCATTCAGACTTAGACCTGGGAACTCTGGGAACAGAGCC | + |
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Preference number: 6 (lower is better) Translates to: AFCSRTSSARSAVVF*RPFRLRPGNSGNRA Trigger: GGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTCTGAATGGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAAGTTCTGCTGCAGAAGGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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| CDS CAA 72 bp | AGCAGAACTTCTTCTGCTCGGTCTGCAGTTGTCTTCTaGAGGCCATTCAGACTTAGACCTGGGAACTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: SRTSSARSAVVF*RPFRLRPGNSG Trigger: CCCAGAGTTCCCAGGTCTAAGTCTGAATGGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAAGTTCTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000005849.11 ENSMUST00000194091.6 ENSMUST00000194654.2 |
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