RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AGRN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041936

Ensembl transcript IDs: ENSMUST00000071248.12, ENSMUST00000105574.9, ENSMUST00000105575.9, ENSMUST00000180572.2

Found 771 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTaGCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAAC +
Preference number: 1 (lower is better)
Translates to: DLGVPQHHFLSLQHS*PDGKEARPAVLLAN
Trigger: GTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CCA 90 bp ATATCACAGTATTGTCACAGGGAGCACTGGGGGTCCAGGCTAGCCTaGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCAGCTTAAGT +
Preference number: 1 (lower is better)
Translates to: ISQYCHREHWGSRLA*GEAGPQHTQESSLS
Trigger: ACTTAAGCTGCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCAGTGCTCCCTGTGACAATACTGTGATAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CCA 90 bp ATCTTTGAGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATaGAGGTCAGCCACACCCTATCGTGATGCACTCCCCATGTTCAGG +
Preference number: 1 (lower is better)
Translates to: IFERWMQLATQAGKQ*RSATPYRDALPMFR
Trigger: CCTGAACATGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCTCAAAGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 90 bp TTTTGGCTCTATAGTGATCTCTGCCTTCCTGTACCTGTCCTTGGCTaGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGATCATCAT +
Preference number: 1 (lower is better)
Translates to: FWLYSDLCLPVPVLG*TLGSNCHSDEDDHH
Trigger: ATGATGATCGTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGAGCCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR GCA 90 bp GATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATCTCTaGCTTCCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGT +
Preference number: 1 (lower is better)
Translates to: DGCFSFSHFWLYSDL*LPVPVLGWTLGSNC
Trigger: ACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 90 bp TCTATAGTGATCTCTGCCTTCCTGTACCTGTCCTTGGCTGGACCCTaGGCAGTAACTGTCACTCAGATGAGGACGATCATCATTACAATG +
Preference number: 1 (lower is better)
Translates to: SIVISAFLYLSLAGP*AVTVTQMRTIIITM
Trigger: CATTGTAATGATGATCGTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 90 bp ACAGGGAATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTaGCTCTATAGTGATCTCTGCCTTCCTGTACCTGTCCTTGGCTGG +
Preference number: 1 (lower is better)
Translates to: TGNGEADGCFSFSHF*LYSDLCLPVPVLGW
Trigger: CCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATTCCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR GCA 90 bp GGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTaGCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACAAGTAGA +
Preference number: 1 (lower is better)
Translates to: GTQFSPNYTLITHKQ*LAMGQETQRINTSR
Trigger: TCTACTTGTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR GCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCACCACTTTTTGTCTCTaGAGCACAGCTGCCCGGACG +
Preference number: 2 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESTTFCL*STAART
Trigger: CGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CAA 90 bp GCTCGAGGTGCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTaGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: ARGATADLGVPQHHF*SLQHSCPDGKEARP
Trigger: TGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGCACCTCGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACTGTCACAGGGAGCACTaGGGGTCCAGGCTAGCCTGG +
Preference number: 2 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDCHREH*GSRLAW
Trigger: CCAGGCTAGCCTGGACCCCCAGTGCTCCCTGTGACA...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR CCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTTGTCACAGGGAGCACTaGGGGTCCAGGCTAGCCTGG +
Preference number: 2 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPCHREH*GSRLAW
Trigger: CCAGGCTAGCCTGGACCCCCAGTGCTCCCTGTGACA...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATGTCACAGGGAGCACTaGGGGTCCAGGCTAGCCTGG +
Preference number: 2 (lower is better)
Translates to: SLASTSSLRGQANTFWEVCHREH*GSRLAW
Trigger: CCAGGCTAGCCTGGACCCCCAGTGCTCCCTGTGACA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR TCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCAAGGGGCTGAGGCATaGTGCCTTAGGCAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHQGAEA*CLRQRS
Trigger: ACTCCTCTGCCTAAGGCATCATGCCTCAGCCCCTTG...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR TCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACAAGGGGCTGAGGCATaGTGCCTTAGGCAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: SLASTSSLRGQANTFWEVQGAEA*CLRQRS
Trigger: ACTCCTCTGCCTAAGGCATCATGCCTCAGCCCCTTG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR GCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAATAACACACAAACAGTaGCTAGCAATGGGCCAGGAG +
Preference number: 2 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPITHKQ*LAMGQE
Trigger: CTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTAT...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGGTATCTTTGAGAGATaGATGCAGCTGGCTACTCAG +
Preference number: 2 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDGIFER*MQLATQ
Trigger: CTGAGTAGCCAGCTGCATCCATCTCTCAAAGATACC...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CAA 90 bp GTCATTTTTGGCTCTATAGTGATCTCTGCCTTCCTGTACCTGTCCTaGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGATC +
Preference number: 2 (lower is better)
Translates to: VIFGSIVISAFLYLS*AGPWAVTVTQMRTI
Trigger: GATCGTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGAGCCAAAAATGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR TCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAACAAGGGGCTGAGGCATaGTGCCTTAGGCAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQQGAEA*CLRQRS
Trigger: ACTCCTCTGCCTAAGGCATCATGCCTCAGCCCCTTG...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCAAGGGGCTGAGGCATaGTGCCTTAGGCAGAGGAGT +
Preference number: 2 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYQGAEA*CLRQRS
Trigger: ACTCCTCTGCCTAAGGCATCATGCCTCAGCCCCTTG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGGAGAGCAGCTTAAGTaGGACCTAAAAAGGACCCAA +
Preference number: 2 (lower is better)
Translates to: SLASTSSLRGQANTFWEVGEQLK*DLKRTQ
Trigger: TTGGGTCCTTTTTAGGTCCCACTTAAGCTGCTCTCC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAACCACTTTTTGTCTCTaGAGCACAGCTGCCCGGACG +
Preference number: 2 (lower is better)
Translates to: TIIITMDQLRDALILDQLTTFCL*STAART
Trigger: CGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR TCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTCTGGCTAGGTATCTTTaGGAGATGGATGCAGCTGGC +
Preference number: 2 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCLARYL*EMDAAG
Trigger: GCCAGCTGCATCCATCTCTCAAAGATACCTAGCCAG...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 72 bp TATTGTCACAGGGAGCACTGGGGGTCCAGGCTAGCCTaGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGC +
Preference number: 3 (lower is better)
Translates to: YCHREHWGSRLA*GEAGPQHTQES
Trigger: GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCAGTGCTCCCTGTGACAATA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR GCA 72 bp GTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTaGCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTT +
Preference number: 3 (lower is better)
Translates to: VPQHHFLSLQHS*PDGKEARPAVL
Trigger: AAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CCA 72 bp AGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATaGAGGTCAGCCACACCCTATCGTGATGCACTCCCC +
Preference number: 3 (lower is better)
Translates to: RWMQLATQAGKQ*RSATPYRDALP
Trigger: GGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 72 bp ATCTCTGCCTTCCTGTACCTGTCCTTGGCTGGACCCTaGGCAGTAACTGTCACTCAGATGAGGACGATCATC +
Preference number: 3 (lower is better)
Translates to: ISAFLYLSLAGP*AVTVTQMRTII
Trigger: GATGATCGTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 72 bp GCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTaGCCAACGTGCAGTCAAGAAAATCATATAAAAATG +
Preference number: 3 (lower is better)
Translates to: ARTERRPGQQSF*PTCSQENHIKM
Trigger: CATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CCA 72 bp TATAGTGATCTCTGCCTTCCTGTACCTGTCCTTGGCTaGACCCTGGGCAGTAACTGTCACTCAGATGAGGAC +
Preference number: 3 (lower is better)
Translates to: YSDLCLPVPVLG*TLGSNCHSDED
Trigger: GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 72 bp ACATGGTTAGGAGCCTGGCTAGGTATCTTTGAGAGATaGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGG +
Preference number: 3 (lower is better)
Translates to: TWLGAWLGIFER*MQLATQAGKQW
Trigger: CCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCTCAAAGATACCTAGCCAGGCTCCTAACCATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR-3UTR CAA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACCCTCAGCACCACTTTTaGTCTCTGCAGCACAGCTGC +
Preference number: 3 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNPQHHF*SLQHSC
Trigger: GCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGG...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR CCA 72 bp GGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTaGCTCTATAGTGATCTCTGCCTTCCTGTACCTGTC +
Preference number: 3 (lower is better)
Translates to: GEADGCFSFSHF*LYSDLCLPVPV
Trigger: GACAGGTACAGGAAGGCAGAGATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
3UTR TCA 72 bp AGACCAATTAAAAGTTGCTGTGAGTTAAACCAGGAATaGCCGCACTTCCACATCAGAAATCAAACAAAATCA +
Preference number: 3 (lower is better)
Translates to: RPIKSCCELNQE*PHFHIRNQTKS
Trigger: TGATTTTGTTTGATTTCTGATGTGGAAGTGCGGTCATTCCTGGTTTAACTCACAGCAACTTTTAATTGGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCT +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRPRQAP*AATYSS
Trigger: AGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCGGCCAGGTGGGCACTaGCAGAGGAACACGCCAGCC +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRRPGGH*QRNTPA
Trigger: GGCTGGCGTGTTCCTCTGTCAGTGCCCACCTGGCCG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCGTCGGCTCACAGTGGTaGCTCTGGCTGTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESVGSQW*LWLWPQ
Trigger: CTGTGGCCACAGCCAGAGCCACCACTGTGAGCCGAC...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCT +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASPRQAP*AATYSS
Trigger: AGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCGAGGCACCAGGCTGCTaGCTGGGTCTGTGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESEAPGC*LGLCSS
Trigger: ACTGGAACACAGACCCAGGCAGCAGCCTGGTGCCTC...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCACGGGGATGGGGTCTaGTCACACGGGCCCTGGTGC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASHGDGV*SHGPWC
Trigger: GCACCAGGGCCCGTGTGACCAGACCCCATCCCCGTG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCCCCACATCTGGTGCCTaGAAGGCTGTGGTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESPTSGA*KAVVGS
Trigger: TGACCCCACCACAGCCTTCCAGGCACCAGATGTGGG...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCTGGTGGCTCTGGCTGTaGCCACAGCAGCTGTGGTTC +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESWWLWL*PQQLWF
Trigger: GAACCACAGCTGCTGTGGCCACAGCCAGAGCCACCA...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCGGCCAGGTGGGCACTaGCAGAGGAACACGCCAGCC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSRPGGH*QRNTPA
Trigger: GGCTGGCGTGTTCCTCTGTCAGTGCCCACCTGGCCG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAGCACCGGGTCCACGTTaGGGATCTCCTCCACTGTGC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSAPGPR*GSPPLC
Trigger: GCACAGTGGAGGAGATCCTCAACGTGGACCCGGTGC...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGGGTGTGGCTGCAGTaGTCCTGGGGGTGCCGACTA +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSRVWLQ*SWGCRL
Trigger: TAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCT...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCAGAGGCCTCCTCACTaGCAGGGCCCACGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSQRPPH*QGPRPG
Trigger: TCCAGGCCGTGGGCCCTGGCAGTGAGGAGGCCTCTG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCAGTGCCAGCCCTGCCTaGAGTACAGCTGCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESSASPA*STAAAE
Trigger: TTCAGCTGCAGCTGTACTGCAGGCAGGGCTGGCACT...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTATCCCCTTCTCGCAGTaGAGCCCAGAGAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRIPFSQ*SPEKPP
Trigger: TGGGGGCTTCTCTGGGCTGCACTGCGAGAAGGGGAT...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGACCCACATGGCCCTTaGCGGAGTAGGCGGATGCGC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASDPHGP*RSRRMR
Trigger: GCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGTC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGCACACAGGGCCAGGTaGGGGGTGCTCACAACGGGG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQAHRAR*GVLTTG
Trigger: CCCCGTTGTGAGCACCCCCCACCTGGCCCTGTGTGC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCATGGTTGGCACAGGCATaGCGGAGCAGCTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSWLAQA*RSSWHS
Trigger: TGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCA...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCATCAGAGGGTGTGGCTaGAGTGCTCCTGGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASIRGCG*SAPGGA
Trigger: GGCACCCCCAGGAGCACTGCAGCCACACCCTCTGAT...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCACAGCACCAGCCCCTaGGTGGCCTCAGTGCGTAAG +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASHSTSP*VASVRK
Trigger: CTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAACTGCAGGTCACATTaGCACAGGGGTCCCGGGACC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSNCRSH*HRGPGT
Trigger: GGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTT...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTTCTGACATGCTGCCCTaGCAGGGGTCACAAGGACCA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRSDMLP*QGSQGP
Trigger: TGGTCCTTGTGACCCCTGCCAGGGCAGCATGTCAGA...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAACGGGCCCTGGTGCTTaGGGGGAATGGTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSTGPGA*GEWSAV
Trigger: AACAGCAGACCATTCCCCCCAAGCACCAGGGCCCGT...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGCACGGGGATGGGGTCTaGTCACACGGGCCCTGGTGC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPHGDGV*SHGPWC
Trigger: GCACCAGGGCCCGTGTGACCAGACCCCATCCCCGTG...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTGAGGCCTCCTACACCTaGTCGGCAGGAGCACTGCCC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSEASYT*SAGALP
Trigger: GGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTC...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCCGGTCTGAGGTGATGTaGGTAATGGGGTGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESRSEVM*VMGWAN
Trigger: ATTGGCCCACCCCATTACCCACATCACCTCAGACCG...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGGAATCACAGGACTTTaGGGGCCGTTGCGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASGITGL*GPLRAW
Trigger: CCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCTTAGGTGAGCAGGGATaGTCTCCGCATTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESLGEQG*SPHSPT
Trigger: TGTGGGGGAATGCGGAGACCATCCCTGCTCACCTAA...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCCAGCCTCCAGGGCCTaGCAGAGGGCCCCGCCATGG +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKPASRA*QRAPPW
Trigger: CCATGGCGGGGCCCTCTGCCAGGCCCTGGAGGCTGG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCATCCAGCAGATGCAGCTaGCGATGGCCCACTACCACG +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSSSRCS*RWPTTT
Trigger: CGTGGTAGTGGGCCATCGCCAGCTGCATCTGCTGGA...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTTACACACTGTCCAGCTaGGCACACAGCCCCAAAGGT +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRYTLSS*AHSPKG
Trigger: ACCTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTA...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAAGACCCAGAGCCCCCTaGGCCACACTCAGCCGGCTC +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPRPRAP*ATLSRL
Trigger: GAGCCGGCTGAGTGTGGCTCAGGGGGCTCTGGGTCT...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAAGACCCAGAGCCCCCTaGGCCACACTCAGCCGGCTC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKRPRAP*ATLSRL
Trigger: GAGCCGGCTGAGTGTGGCTCAGGGGGCTCTGGGTCT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGATGGCCCAGGGCTTaGCCATCTGGACACTGCCCA +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASRWPRA*PSGHCP
Trigger: TGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCT...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCTCCCCAAACAACTCTaGCTTGGGGTCAGCCATCTC +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRLPKQL*LGVSHL
Trigger: GAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCACAGAAGGAACCACTaGGTCCCAGGGGGCACGCAC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQHRRNH*VPGGTH
Trigger: GTGCGTGCCCCCTGGGACGCAGTGGTTCCTTCTGTG...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCACAGAAGGAACCACTaGGTCCCAGGGGGCACGCAC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSHRRNH*VPGGTH
Trigger: GTGCGTGCCCCCTGGGACGCAGTGGTTCCTTCTGTG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCCTGCGTGGCCTCAGTaGGTAAGCTCAGCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRPAWPQ*VSSAQS
Trigger: ACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTATCCTGGGCACACACTaGCCTGTAAGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRILGTH*PVSPIT
Trigger: TGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGAT...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCAAGGGTACAGGCCATaGATTCCAGCTCGCACACAC +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRQGYRP*IPARTH
Trigger: GTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGCACACAGGGCCAGGTaGGGGGTGCTCACAACGGGG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSAHRAR*GVLTTG
Trigger: CCCCGTTGTGAGCACCCCCCACCTGGCCCTGTGTGC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGACACTGCCCACACTTaGGACCAGCCACACCAGGTC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASDTAHT*DQPHQV
Trigger: GACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRVGQTH*AKPASS
Trigger: AGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAAC...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGGGGTGGGCCAATCATaGGCAGTAGTGCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASGVGQS*AVVLGD
Trigger: GTCTCCCAGCACTACTGCCCATGATTGGCCCACCCC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACACGGCCTGGATACCTaGATCTGTTGGAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSHGLDT*ICWSKA
Trigger: GGCCTTGCTCCAACAGATCCAGGTATCCAGGCCGTG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCTGGCCACAGCAGCTGTaGTTCCTGTTGCAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASWPQQL*FLLQLP
Trigger: CGGGAGCTGCAACAGGAACCACAGCTGCTGTGGCCA...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTTTAGGTGAGCAGGGATaGTCTCCGCATTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRLGEQG*SPHSPT
Trigger: TGTGGGGGAATGCGGAGACCATCCCTGCTCACCTAA...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACCAGCCTCCAGGGCCTaGCAGAGGGCCCCGCCATGG +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVPASRA*QRAPPW
Trigger: CCATGGCGGGGCCCTCTGCCAGGCCCTGGAGGCTGG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQTRPVF*VLIPDT
Trigger: GGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGT...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCGGCCAGGTGGGCACTaGCAGAGGAACACGCCAGCC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRPGGH*QRNTPA
Trigger: GGCTGGCGTGTTCCTCTGTCAGTGCCCACCTGGCCG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGGTTGCAATGGCAGGTaGTGGGACAGCCAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQGCNGR*WDSQPS
Trigger: GCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCAGAGGCCTCCTCACTaGCAGGGCCCACGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKQRPPH*QGPRPG
Trigger: TCCAGGCCGTGGGCCCTGGCAGTGAGGAGGCCTCTG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCATACAAAGTCCCCCTTaGCATCCGTCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESIQSPP*HPSSAH
Trigger: ATGGGCAGAAGACGGATGGCAAGGGGGACTTTGTAT...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACCTGCGTGGCCTCAGTaGGTAAGCTCAGCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSPAWPQ*VSSAQS
Trigger: ACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGACCCACATGGCCCTTaGCGGAGTAGGCGGATGCGC +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDDPHGP*RSRRMR
Trigger: GCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGTC...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTAACTGCAGGTCACATTaGCACAGGGGTCCCGGGACC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSNCRSH*HRGPGT
Trigger: GGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTT...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGACGGGCCCTGGTGCTTaGGGGGAATGGTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQTGPGA*GEWSAV
Trigger: AACAGCAGACCATTCCCCCCAAGCACCAGGGCCCGT...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTACGGGCCCTGGTGCTTaGGGGGAATGGTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSTGPGA*GEWSAV
Trigger: AACAGCAGACCATTCCCCCCAAGCACCAGGGCCCGT...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGCACACAGGGCCAGGTaGGGGGTGCTCACAACGGGG +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKAHRAR*GVLTTG
Trigger: CCCCGTTGTGAGCACCCCCCACCTGGCCCTGTGTGC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGACACTGCCCACACTTaGGACCAGCCACACCAGGTC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQDTAHT*DQPHQV
Trigger: GACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCAGGGCTTGACCATCTaGACACTGCCCACACTTGGG +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASQGLTI*TLPTLG
Trigger: CCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGAGGAAGCCCTCTCGATaGGTGGCCCGTGGGTCACCA +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPRKPSR*VARGSP
Trigger: TGGTGACCCACGGGCCACCCATCGAGAGGGCTTCCT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTTCACAGTGGTGGCTCTaGCTGTGGCCACAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSSQWWL*LWPQQL
Trigger: CAGCTGCTGTGGCCACAGCCAGAGCCACCACTGTGA...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGTCACAGTGGTGGCTCTaGCTGTGGCCACAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQSQWWL*LWPQQL
Trigger: CAGCTGCTGTGGCCACAGCCAGAGCCACCACTGTGA...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTGGTAGGCTCGGAGGGTaGGGAAGGCCAAGAAGGAGT +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSGRLGG*GRPRRS
Trigger: ACTCCTTCTTGGCCTTCCCCACCCTCCGAGCCTACC...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAACAGAGGGCCCCGCCATaGCAGGGGTTAGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKQRAPP*QGLGEQ
Trigger: CTGCTCACCTAACCCCTGCCATGGCGGGGCCCTCTG...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAACCCCTGGAAAGCACATaGCAGGGGGCTGACCCGTGG +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKPLEST*QGADPW
Trigger: CCACGGGTCAGCCCCCTGCCATGTGCTTTCCAGGGG...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACCCCCTGGAAAGCACATaGCAGGGGGCTGACCCGTGG +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDPLEST*QGADPW
Trigger: CCACGGGTCAGCCCCCTGCCATGTGCTTTCCAGGGG...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGACTTGGCCCCACCCCTaGAAAGCACATGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPTWPHP*KAHGRG
Trigger: CCCCCTGCCATGTGCTTTCCAGGGGTGGGGCCAAGT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGCACCAGCCCCTGCGTaGCCTCAGTGCGTAAGCTCA +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPAPAPA*PQCVSS
Trigger: TGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGC...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCTTCACCCGGCAAATATaGTTCAGGTCTGACATGCTG +
Preference number: 4 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESFTRQI*FRSDML
Trigger: CAGCATGTCAGACCTGAATCATATTTGCCGGGTGAA...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPTRPVF*VLIPDT
Trigger: GGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAACACCCTGGGCAGCAGTaGCATTGTCCTGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKHPGQQ*HCPGSS
Trigger: GCTGCTGCCAGGACAATGTCACTGCTGCCCAGGGTG...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACTCCCTGTGCTCCCTGTaGGCCCTGACTCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDSLCSL*ALTRSQ
Trigger: CTGGCTTCGAGTCAGGGCTCACAGGGAGCACAGGGA...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGCTTCATTGCCCACCTaGAGGGAACCTTCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQASLPT*REPSLC
Trigger: GCACAGGGAAGGTTCCCTTCAGGTGGGCAATGAAGC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAACGGAGGCACCAGGCTaGTGCCTGGGTCTGTGTTCC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKTEAPG*CLGLCS
Trigger: GGAACACAGACCCAGGCAGCAGCCTGGTGCCTCCGT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACTTCACTGTGCATGTTaGCCCAAATGCACACTGCGC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSLHCAC*PKCTLR
Trigger: GCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAGACCCACATGGCCCTTaGCGGAGTAGGCGGATGCGC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSDPHGP*RSRRMR
Trigger: GCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGTC...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACACTTGGCCCCACCCCTaGAAAGCACATGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDTWPHP*KAHGRG
Trigger: CCCCCTGCCATGTGCTTTCCAGGGGTGGGGCCAAGT...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCTCATTCTTGTGGGCTaGCCACAGGTAGGGTGGTGC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSLILVG*PQVGWC
Trigger: GCACCACCCTACCTGTGGCCAGCCCACAAGAATGAG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
3UTR CAA 72 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTaGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHF*SLQHSCPDGKE
Trigger: CTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACTGGTTGGCACAGGCATaGCGGAGCAGCTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDWLAQA*RSSWHS
Trigger: TGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCA...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTTCTCGAGTCTGGCATTaGCCAGAGCGCACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSSRVWH*PERTFW
Trigger: CCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGA...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTACACACTGCCGTAAGTaGCACCATCACTGCCGCACA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSTHCRK*HHHCRT
Trigger: TGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGT...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKTRPVF*VLIPDT
Trigger: GGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGAGGAGCACTGCCCTGTaGCTGGGTCACAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRSTAL*LGHKCR
Trigger: GCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACAGATGGCCCAGGGCTTaGCCATCTGGACACTGCCCA +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDRWPRA*PSGHCP
Trigger: TGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCT...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTAGATGGCCCAGGGCTTaGCCATCTGGACACTGCCCA +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPRWPRA*PSGHCP
Trigger: TGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCT...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTTGTTGGAGCAAGGCCTaGCCCACATCTGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPCWSKA*PTSGAW
Trigger: CCAGGCACCAGATGTGGGTCAGGCCTTGCTCCAACA...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTAACCTGAACTGTACATaGCCATCCAACAGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRNLNCT*PSNRAR
Trigger: TCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTT...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATCCCTGTGCTCCCTGTaGGCCCTGACTCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSSLCSL*ALTRSQ
Trigger: CTGGCTTCGAGTCAGGGCTCACAGGGAGCACAGGGA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAACGGAGGCACCAGGCTaGTGCCTGGGTCTGTGTTCC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSTEAPG*CLGLCS
Trigger: GGAACACAGACCCAGGCAGCAGCCTGGTGCCTCCGT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAGTACAGGCGTGGACATaGAGCTCACATTCACTAGCA +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSVQAWT*SSHSLA
Trigger: TGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTAC...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCGGCTCACACGGCCCTaGACGGGCCTCCTCAATTTG +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHRLTRP*TGLLNL
Trigger: CAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCG...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAGGTCGGCAGGAGCACTaGCCTGTGACTGGGTCACAA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPGRQEH*PVTGSQ
Trigger: TTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACC...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCTGGGGTGGTCATAGATaGAGATGTAGGGGAAACCCC +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASWGGHR*RCRGNP
Trigger: GGGGTTTCCCCTACATCTGCATCTATGACCACCCCA...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGAGGGTGTGGCTGCAGTaGTCCTGGGGGTGCCGACTA +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRVWLQ*SWGCRL
Trigger: TAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACCTGACCCACATCTGGTaGCTGGAAGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDLTHIW*LEGCGG
Trigger: CCCACCACAGCCTTCCAGGCACCAGATGTGGGTCAG...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCTTTCTCACAGACAGTaGCAGCCCTGCCTGCAGTAC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSLSHRQ*QPCLQY
Trigger: GTACTGCAGGCAGGGCTGGCACTGTCTGTGAGAAAG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGGCACAGAGGGGAGCTaGACTTTCTCACAGACAGTG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQGTEGS*TFSQTV
Trigger: CACTGTCTGTGAGAAAGTGCAGCTCCCCTCTGTGCC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACTTTGCCACGTGCATTaGCATTGTAGAGCAGCAGTC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSLCHVH*HCRAAV
Trigger: GACTGCTGCTCTACAATGGCAATGCACGTGGCAAAG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCTTGAAGGGCACCCTTaGGGCCATTTCGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSLEGHP*GHFVPG
Trigger: TCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAATCCCCTTCTCGCAGTaGAGCCCAGAGAAGCCCCCA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPIPFSQ*SPEKPP
Trigger: TGGGGGCTTCTCTGGGCTGCACTGCGAGAAGGGGAT...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGCCTTGGGGAGAGCCTaGCCCACAGGAAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSALGRA*PTGSFC
Trigger: ACAGAAGCTTCCTGTGGGGCAGGCTCTCCCCAAGGC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGCCTTGGGGAGAGCCTaGCCCACAGGAAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKALGRA*PTGSFC
Trigger: ACAGAAGCTTCCTGTGGGGCAGGCTCTCCCCAAGGC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGAGGTTGAGCATGGTGTaGGGGACCGGAGATTCCCCT +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPRLSMV*GTGDSP
Trigger: AGGGGAATCTCCGGTCCCGCACACCATGCTCAACCT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACACGGGCCCTGGTGCTTaGGGGGAATGGTCTGCTGTT +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDTGPGA*GEWSAV
Trigger: AACAGCAGACCATTCCCCCCAAGCACCAGGGCCCGT...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCACGGGGATGGGGTCTaGTCACACGGGCCCTGGTGC +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYHGDGV*SHGPWC
Trigger: GCACCAGGGCCCGTGTGACCAGACCCCATCCCCGTG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGCCAAGCCCACACCCTaGGCAGCAGTGACATTGTCC +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSAKPTP*AAVTLS
Trigger: GGACAATGTCACTGCTGCCCAGGGTGTGGGCTTGGC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGAGGCCTCCTACACCTaGTCGGCAGGAGCACTGCCC +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVEASYT*SAGALP
Trigger: GGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCATGGACATGTGAGAGTTaGGCAGACACACTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSWTCES*ADTLGK
Trigger: TTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCA...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGCTGGCGGCAGGCAATaGTCTTCAGCTGGCATTCAT +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQAGGRQ*SSAGIH
Trigger: ATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAACACTCTCCCGGCATaGACCAAGACTCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSNTLPA*TKTLNG
Trigger: TCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTT...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGGGGTGGGCCAATCATaGGCAGTAGTGCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKGVGQS*AVVLGD
Trigger: GTCTCCCAGCACTACTGCCCATGATTGGCCCACCCC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGGTCTGAGGTGATGTaGGTAATGGGGTGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQRSEVM*VMGWAN
Trigger: ATTGGCCCACCCCATTACCCACATCACCTCAGACCG...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCACCCACATCTGGTGCCTaGAAGGCTGTGGTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPPTSGA*KAVVGS
Trigger: TGACCCCACCACAGCCTTCCAGGCACCAGATGTGGG...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGCACGGCCTGGATACCTaGATCTGTTGGAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPHGLDT*ICWSKA
Trigger: GGCCTTGCTCCAACAGATCCAGGTATCCAGGCCGTG...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTCACAGTGGTGGCTCTaGCTGTGGCCACAGCAGCTG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSSQWWL*LWPQQL
Trigger: CAGCTGCTGTGGCCACAGCCAGAGCCACCACTGTGA...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGTCGGCTCACAGTGGTaGCTCTGGCTGTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKVGSQW*LWLWPQ
Trigger: CTGTGGCCACAGCCAGAGCCACCACTGTGAGCCGAC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTTTAGGTGAGCAGGGATaGTCTCCGCATTCCCCCACA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSLGEQG*SPHSPT
Trigger: TGTGGGGGAATGCGGAGACCATCCCTGCTCACCTAA...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGCCAAAGCGGCCAGGTaGGCACTGACAGAGGAACAC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKAKAAR*ALTEEH
Trigger: GTGTTCCTCTGTCAGTGCCCACCTGGCCGCTTTGGC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAGCCAAAGCGGCCAGGTaGGCACTGACAGAGGAACAC +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPAKAAR*ALTEEH
Trigger: GTGTTCCTCTGTCAGTGCCCACCTGGCCGCTTTGGC...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTTCCAGCAGATGCAGCTaGCGATGGCCCACTACCACG +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPSSRCS*RWPTTT
Trigger: CGTGGTAGTGGGCCATCGCCAGCTGCATCTGCTGGA...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTCCAGCAGATGCAGCTaGCGATGGCCCACTACCACG +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDSSRCS*RWPTTT
Trigger: CGTGGTAGTGGGCCATCGCCAGCTGCATCTGCTGGA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCATTTGTACCTGCTGCTaGCAGGCAGCCTCTCGGAGC +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSICTCC*QAASRS
Trigger: GCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAAT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACTGTTGGAGCAAGGCCTaGCCCACATCTGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHCWSKA*PTSGAW
Trigger: CCAGGCACCAGATGTGGGTCAGGCCTTGCTCCAACA...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGAGGCACCAGGCTGCTaGCTGGGTCTGTGTTCCAGT +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKEAPGC*LGLCSS
Trigger: ACTGGAACACAGACCCAGGCAGCAGCCTGGTGCCTC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTGGCAGACATTCTTCTTaGACACACAGGAGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPGRHSS*THRRPG
Trigger: GCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCC...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGCAGACATTCTTCTTaGACACACAGGAGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDGRHSS*THRRPG
Trigger: GCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCC...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGGCAGACATTCTTCTTaGACACACAGGAGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKGRHSS*THRRPG
Trigger: GCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGATTCAGGTCTGACATaGTGCCCTGGCAGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDDSGLT*CPGRGH
Trigger: GTGACCCCTGCCAGGGCAGCATGTCAGACCTGAATC...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCATCCCATTCTTCACTGTaGATGTTGCCCCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSSHSSL*MLPQMH
Trigger: GTGCATTTGGGGCAACATGCACAGTGAAGAATGGGA...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGTACAGGCGTGGACATaGAGCTCACATTCACTAGCA +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASVQAWT*SSHSLA
Trigger: TGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTAC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAAGGAGCCGTGTGGGTTaGAATGGCAGGTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSRSRVG*NGRCWD
Trigger: GTCCCAGCACCTGCCATTGCAACCCACACGGCTCCT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTTGGGGTGGTCATAGATaGAGATGTAGGGGAAACCCC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSWGGHR*RCRGNP
Trigger: GGGGTTTCCCCTACATCTGCATCTATGACCACCCCA...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGCAGCACGCCCTGGAATaGCTTGGTAGCTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPQHALE*LGSWTV
Trigger: AACTGTCCAGCTACCAAGGCATTCCAGGGCGTGCTG...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGCTTTCTCACAGACAGTaGCAGCCCTGCCTGCAGTAC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPLSHRQ*QPCLQY
Trigger: GTACTGCAGGCAGGGCTGGCACTGTCTGTGAGAAAG...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACACAGCACCAGCCCCTaGGTGGCCTCAGTGCGTAAG +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVHSTSP*VASVRK
Trigger: CTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACAGCCCACAAAACCCGTaGCATAGGCCTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDSPQNP*HRPWGE
Trigger: CTCTCCCCAAGGCCTATGGCACGGGTTTTGTGGGCT...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACAACTGCAGGTCACATTaGCACAGGGGTCCCGGGACC +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHNCRSH*HRGPGT
Trigger: GGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTT...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGAGCCACATACGGGCTaGGCTGACTCCACACACTCA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSEPHTG*ADSTHS
Trigger: TGAGTGTGTGGAGTCAGCCCAGCCCGTATGTGGCTC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACGCCAAGCCCACACCCTaGGCAGCAGTGACATTGTCC +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHAKPTP*AAVTLS
Trigger: GGACAATGTCACTGCTGCCCAGGGTGTGGGCTTGGC...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCGTGTGGGTTGCAATaGCAGGTGCTGGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHPCGLQ*QVLGQP
Trigger: TGGCTGTCCCAGCACCTGCCATTGCAACCCACACGG...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCAGGGCTTGACCATCTaGACACTGCCCACACTTGGG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSQGLTI*TLPTLG
Trigger: CCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCAAACAACTCTGACTTaGGGTCAGCCATCTCTGGTG +
Preference number: 4 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASQTTLT*GQPSLV
Trigger: CACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCCACATCTGGTGCCTaGAAGGCTGTGGTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHPTSGA*KAVVGS
Trigger: TGACCCCACCACAGCCTTCCAGGCACCAGATGTGGG...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCACGGCCTGGATACCTaGATCTGTTGGAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSHGLDT*ICWSKA
Trigger: GGCCTTGCTCCAACAGATCCAGGTATCCAGGCCGTG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTGGTGGCTCTGGCTGTaGCCACAGCAGCTGTGGTTC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKWWLWL*PQQLWF
Trigger: GAACCACAGCTGCTGTGGCCACAGCCAGAGCCACCA...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTCCGTGGAGGCAAGGCTaGGAATCACAGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPPWRQG*ESQDFG
Trigger: CCCAAAGTCCTGTGATTCCCAGCCTTGCCTCCACGG...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCAGAGGGCCCCGCCATaGCAGGGGTTAGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYQRAPP*QGLGEQ
Trigger: CTGCTCACCTAACCCCTGCCATGGCGGGGCCCTCTG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCCAGCCTCCAGGGCCTaGCAGAGGGCCCCGCCATGG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYPASRA*QRAPPW
Trigger: CCATGGCGGGGCCCTCTGCCAGGCCCTGGAGGCTGG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGCACCAGCCCCTGCGTaGCCTCAGTGCGTAAGCTCA +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVAPAPA*PQCVSS
Trigger: TGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTCTGTGTCCAATTGTGTaGCACCCAGCGGGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPLCPIV*HPAGKS
Trigger: GCTCTTCCCCGCTGGGTGCCACACAATTGGACACAG...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATCCCCGGTGGACACCTaGTTGTCGCAGATGAGGGGG +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVSPVDT*LSQMRG
Trigger: CCCCCTCATCTGCGACAACCAGGTGTCCACCGGGGA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACAGGTAGGGTGGTGCTaGGTTCACAAAGAAGATTCT +
Preference number: 4 (lower is better)
Translates to: CPDGKEARPAVLLANVQSQVGWC*VHKEDS
Trigger: AGAATCTTCTTTGTGAACCCAGCACCACCCTACCTG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAACACACTGCCGTAAGTaGCACCATCACTGCCGCACA +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKTHCRK*HHHCRT
Trigger: TGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTACACACTGTCCAGCTaGGCACACAGCCCCAAAGGT +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDYTLSS*AHSPKG
Trigger: ACCTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTGCAGCAGCCCAAAGGTaGGTTGTAACAGGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPAAAQR*VVTGSP
Trigger: AGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGC...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGCAGCAGCCCAAAGGTaGGTTGTAACAGGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKAAAQR*VVTGSP
Trigger: AGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAGGTAGACTCGTGGGGTaGCAGAAGAGGCAGACAGTC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSGRLVG*QKRQTV
Trigger: GACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACC...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATCAGGTCTGACATGCTaGCCTGGCAGGGGTCACAAG +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSSGLTC*PGRGHK
Trigger: CTTGTGACCCCTGCCAGGGCAGCATGTCAGACCTGA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGATTCAGGTCTGACATaGTGCCCTGGCAGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKDSGLT*CPGRGH
Trigger: GTGACCCCTGCCAGGGCAGCATGTCAGACCTGAATC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGGTTGCAATGGCAGGTaGTGGGACAGCCAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVGCNGR*WDSQPS
Trigger: GCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATATCAGAGGGTGTGGCTaGAGTGCTCCTGGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINIRGCG*SAPGGA
Trigger: GGCACCCCCAGGAGCACTGCAGCCACACCCTCTGAT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCAGCACGCCCTGGAATaGCTTGGTAGCTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSQHALE*LGSWTV
Trigger: AACTGTCCAGCTACCAAGGCATTCCAGGGCGTGCTG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCCAGCGTGCTCTCAATaGTCCTTGCAGTCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSPACSQ*SLQSPQ
Trigger: TTGGGGAGACTGCAAGGAGCATTGAGAGCACGCTGG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAGGCACAGAGGGGAGCTaGACTTTCTCACAGACAGTG +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPGTEGS*TFSQTV
Trigger: CACTGTCTGTGAGAAAGTGCAGCTCCCCTCTGTGCC...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAACAGAAAGTGTGCCCTaGCGCCAATGCCGTGACAAC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKTESVP*RQCRDN
Trigger: GTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACACAGAAAGTGTGCCCTaGCGCCAATGCCGTGACAAC +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDTESVP*RQCRDN
Trigger: GTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGT...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGTCAGCTCAAAGTGGTTaGTCTGCAGCGCTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQSAQSG*SAALSH
Trigger: GTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGA...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGAGGTTGAGCATGGTGTaGGGGACCGGAGATTCCCCT +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRLSMV*GTGDSP
Trigger: AGGGGAATCTCCGGTCCCGCACACCATGCTCAACCT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACACCAGGCTGCTGCCTaGGTCTGTGTTCCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVHQAAA*VCVPVA
Trigger: TGCCACTGGAACACAGACCCAGGCAGCAGCCTGGTG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCACAAGGGTACAGGCCATaGATTCCAGCTCGCACACAC +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPQGYRP*IPARTH
Trigger: GTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTG...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACCGTGTGGGTTGCAATaGCAGGTGCTGGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVPCGLQ*QVLGQP
Trigger: TGGCTGTCCCAGCACCTGCCATTGCAACCCACACGG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGCTGGCGGCAGGCAATaGTCTTCAGCTGGCATTCAT +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSAGGRQ*SSAGIH
Trigger: ATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGCTGGCGGCAGGCAATaGTCTTCAGCTGGCATTCAT +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDAGGRQ*SSAGIH
Trigger: ATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGC...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATCCACATCAGAGGGTGTaGCTGCAGTGCTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINPHQRV*LQCSWG
Trigger: CCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGG...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAAACAACTCTGACTTaGGGTCAGCCATCTCTGGTG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQQTTLT*GQPSLV
Trigger: CACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTG...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGCCTGGAAGGCTGTGGTaGGGTCAAAGTGAACATCCA +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPPGRLW*GQSEHP
Trigger: TGGATGTTCACTTTGACCCCACCACAGCCTTCCAGG...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGTCGGCTCACAGTGGTaGCTCTGGCTGTGGCCACAG +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYVGSQW*LWLWPQ
Trigger: CTGTGGCCACAGCCAGAGCCACCACTGTGAGCCGAC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCACTGGGGTAGACTCGTaGGGTGACAGAAGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSTGVDS*GDRRGR
Trigger: TCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTAAGGCCAAGAAGGAGTaGCCCTTAAAAGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSKAKKE*PLKAGT
Trigger: TGTGCCAGCTTTTAAGGGCCACTCCTTCTTGGCCTT...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGACAGGCACTCATAAGTaGCTTCCCTCGGGATACAGG +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPTGTHK*LPSGYR
Trigger: CCTGTATCCCGAGGGAAGCCACTTATGAGTGCCTGT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGCACCAGCCCCTGCGTaGCCTCAGTGCGTAAGCTCA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYAPAPA*PQCVSS
Trigger: TGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCACTGTGTCCAATTGTGTaGCACCCAGCGGGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSLCPIV*HPAGKS
Trigger: GCTCTTCCCCGCTGGGTGCCACACAATTGGACACAG...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGACCCAGAGCCCCCTaGGCCACACTCAGCCGGCTC +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQRPRAP*ATLSRL
Trigger: GAGCCGGCTGAGTGTGGCTCAGGGGGCTCTGGGTCT...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCTCCCCAAACAACTCTaGCTTGGGGTCAGCCATCTC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKLPKQL*LGVSHL
Trigger: GAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACCTTCACTGTGCATGTTaGCCCAAATGCACACTGCGC +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDLHCAC*PKCTLR
Trigger: GCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAG...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCTTCACTGTGCATGTTaGCCCAAATGCACACTGCGC +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSLHCAC*PKCTLR
Trigger: GCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTTCCCATTCTTCACTGTaGATGTTGCCCCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSSHSSL*MLPQMH
Trigger: GTGCATTTGGGGCAACATGCACAGTGAAGAATGGGA...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGGGGTGGTCATAGATaGAGATGTAGGGGAAACCCC +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSWGGHR*RCRGNP
Trigger: GGGGTTTCCCCTACATCTGCATCTATGACCACCCCA...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGACAGAAAGTGTGCCCTaGCGCCAATGCCGTGACAAC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKTESVP*RQCRDN
Trigger: GTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCACCAGGCTGCTGCCTaGGTCTGTGTTCCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYHQAAA*VCVPVA
Trigger: TGCCACTGGAACACAGACCCAGGCAGCAGCCTGGTG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGATCCTGGGCACACACTaGCCTGTAAGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKILGTH*PVSPIT
Trigger: TGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGAT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACATCCTGGGCACACACTaGCCTGTAAGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHILGTH*PVSPIT
Trigger: TGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGAT...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCTTTTAAGGACACTCTaGCAACTAAAGTCACAGACA +
Preference number: 4 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRLLRTL*QLKSQT
Trigger: TGTCTGTGACTTTAGTTGCCAGAGTGTCCTTAAAAG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGACACTGCCCACACTTaGGACCAGCCACACCAGGTC +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINDTAHT*DQPHQV
Trigger: GACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACAGGGCTTGACCATCTaGACACTGCCCACACTTGGG +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVQGLTI*TLPTLG
Trigger: CCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHVGQTH*AKPASS
Trigger: AGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAAC...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGCAATGGTCTTCAGCTaGCATTCATTGCCGTATGTG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQAMVFS*HSLPYV
Trigger: CACATACGGCAATGAATGCCAGCTGAAGACCATTGC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTGCAATGGTCTTCAGCTaGCATTCATTGCCGTATGTG +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSAMVFS*HSLPYV
Trigger: CACATACGGCAATGAATGCCAGCTGAAGACCATTGC...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGGGGTGGGCCAATCATaGGCAGTAGTGCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINGVGQS*AVVLGD
Trigger: GTCTCCCAGCACTACTGCCCATGATTGGCCCACCCC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGGGGTCAGCCATCTCTaGTGTGTAGAACAGTTCCTG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSGVSHL*CVEQFL
Trigger: CAGGAACTGTTCTACACACCAGAGATGGCTGACCCC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCACCTGGAAGGCTGTGGTaGGGTCAAAGTGAACATCCA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPPGRLW*GQSEHP
Trigger: TGGATGTTCACTTTGACCCCACCACAGCCTTCCAGG...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACCCTGGAAGGCTGTGGTaGGGTCAAAGTGAACATCCA +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDPGRLW*GQSEHP
Trigger: TGGATGTTCACTTTGACCCCACCACAGCCTTCCAGG...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTGGTGGCTCTGGCTGTaGCCACAGCAGCTGTGGTTC +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYWWLWL*PQQLWF
Trigger: GAACCACAGCTGCTGTGGCCACAGCCAGAGCCACCA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGACTGGGGTAGACTCGTaGGGTGACAGAAGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKTGVDS*GDRRGR
Trigger: TCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAACTGGGGTAGACTCGTaGGGTGACAGAAGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSTGVDS*GDRRGR
Trigger: TCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGTGGCCCTTAAAAGCTaGCACAGAGGGGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVVALKS*HRGELH
Trigger: GTGCAGCTCCCCTCTGTGCCAGCTTTTAAGGGCCAC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCACAGGCACTCATAAGTaGCTTCCCTCGGGATACAGG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSTGTHK*LPSGYR
Trigger: CCTGTATCCCGAGGGAAGCCACTTATGAGTGCCTGT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATATTTGTACCTGCTGCTaGCAGGCAGCCTCTCGGAGC +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINICTCC*QAASRS
Trigger: GCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAAT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAACTCCGTGCTATAGGTaGCTCCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSTPCYR*LHLSHT
Trigger: TGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGTGGTGGGGTCAAAGTaGACATCCACAATGGCACGG +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVVVGSK*TSTMAR
Trigger: CCGTGCCATTGTGGATGTTCACTTTGACCCCACCAC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGGTAGACTCGTGGGGTaGCAGAAGAGGCAGACAGTC +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYGRLVG*QKRQTV
Trigger: GACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGAACCTGAACTGTACATaGCCATCCAACAGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPNLNCT*PSNRAR
Trigger: TCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTT...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGCTTCATTGCCCACCTaGAGGGAACCTTCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYASLPT*REPSLC
Trigger: GCACAGGGAAGGTTCCCTTCAGGTGGGCAATGAAGC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATTAGCTCTGGTTTGGTaGCAGCGTCCTCCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSLALVW*QRPPAD
Trigger: ATCTGCTGGAGGACGCTGTCACCAAACCAGAGCTAA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATTCAGGTCTGACATGCTaGCCTGGCAGGGGTCACAAG +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINSGLTC*PGRGHK
Trigger: CTTGTGACCCCTGCCAGGGCAGCATGTCAGACCTGA...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGTCCCATTCTTCACTGTaGATGTTGCCCCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPSHSSL*MLPQMH
Trigger: GTGCATTTGGGGCAACATGCACAGTGAAGAATGGGA...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACGGCTCACACGGCCCTaGACGGGCCTCCTCAATTTG +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKRLTRP*TGLLNL
Trigger: CAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATGGGGTGGTCATAGATaGAGATGTAGGGGAAACCCC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSWGGHR*RCRGNP
Trigger: GGGGTTTCCCCTACATCTGCATCTATGACCACCCCA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATCCAGTGAGGGTGTCTTaGCATCTGAGCAGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINPVRVS*HLSSSP
Trigger: TGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGG...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAACAGAGGCCTCCTCACTaGCAGGGCCCACGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQQRPPH*QGPRPG
Trigger: TCCAGGCCGTGGGCCCTGGCAGTGAGGAGGCCTCTG...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAGTGCCAGCCCTGCCTaGAGTACAGCTGCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINSASPA*STAAAE
Trigger: TTCAGCTGCAGCTGTACTGCAGGCAGGGCTGGCACT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGTGTCCAACATACGAATaGATCCTTTCAGGCCGATGC +
Preference number: 4 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPCPTYE*ILSGRC
Trigger: GCATCGGCCTGAAAGGATGCATTCGTATGTTGGACA...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTCAGCTCAAAGTGGTTaGTCTGCAGCGCTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDSAQSG*SAALSH
Trigger: GTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACCTGCGTGGCCTCAGTaGGTAAGCTCAGCTCAAAGT +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVPAWPQ*VSSAQS
Trigger: ACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACTCACAGGGGCTTCATTaGCCACCTGAAGGGAACCTT +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHSQGLH*PPEGNL
Trigger: AAGGTTCCCTTCAGGTGGGCAATGAAGCCCCTGTGA...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGAGCCACATACGGGCTaGGCTGACTCCACACACTCA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYEPHTG*ADSTHS
Trigger: TGAGTGTGTGGAGTCAGCCCAGCCCGTATGTGGCTC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAGCACACAGGGCCAGGTaGGGGGTGCTCACAACGGGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLAHRAR*GVLTTG
Trigger: CCCCGTTGTGAGCACCCCCCACCTGGCCCTGTGTGC...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACAACACTCTCCCGGCATaGACCAAGACTCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDNTLPA*TKTLNG
Trigger: TCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTT...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAAACACTCTCCCGGCATaGACCAAGACTCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPNTLPA*TKTLNG
Trigger: TCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTT...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGCTCAGGATATGCCTTaGGGTGGTCATAGATGCAGA +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKAQDMP*GGHRCR
Trigger: TCTGCATCTATGACCACCCCAAGGCATATCCTGAGC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGAGTGAACATCCACAATaGCACGGACTAATTTGCCAG +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQSEHPQ*HGLICQ
Trigger: CTGGCAAATTAGTCCGTGCCATTGTGGATGTTCACT...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCACCTGGAAGGCTGTGGTaGGGTCAAAGTGAACATCCA +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSPGRLW*GQSEHP
Trigger: TGGATGTTCACTTTGACCCCACCACAGCCTTCCAGG...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACAAGGCCAAGAAGGAGTaGCCCTTAAAAGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDKAKKE*PLKAGT
Trigger: TGTGCCAGCTTTTAAGGGCCACTCCTTCTTGGCCTT...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTC +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKKLSSK*LLCSAF
Trigger: GAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CAA 72 bp GGCTCTATAGTGATCTCTGCCTTCCTGTACCTGTCCTaGGCTGGACCCTGGGCAGTAACTGTCACTCAGATG +
Preference number: 4 (lower is better)
Translates to: GSIVISAFLYLS*AGPWAVTVTQM
Trigger: CATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGGAAGGCAGAGATCACTATAGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTTCACCCGGCAAATATaGTTCAGGTCTGACATGCTG +
Preference number: 4 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDFTRQI*FRSDML
Trigger: CAGCATGTCAGACCTGAATCATATTTGCCGGGTGAA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATTCTCGAGTCTGGCATTaGCCAGAGCGCACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINSRVWH*PERTFW
Trigger: CCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGA...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCT +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNPRQAP*AATYSS
Trigger: AGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGG...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCACCCTGGGCAGCAGTaGCATTGTCCTGGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYHPGQQ*HCPGSS
Trigger: GCTGCTGCCAGGACAATGTCACTGCTGCCCAGGGTG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGTGGTGGGGTCAAAGTaGACATCCACAATGGCACGG +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINVVGSK*TSTMAR
Trigger: CCGTGCCATTGTGGATGTTCACTTTGACCCCACCAC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCAACCTGAACTGTACATaGCCATCCAACAGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSNLNCT*PSNRAR
Trigger: TCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCGGCTCACACGGCCCTaGACGGGCCTCCTCAATTTG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYRLTRP*TGLLNL
Trigger: CAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAAGGAGCCGTGTGGGTTaGAATGGCAGGTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKRSRVG*NGRCWD
Trigger: GTCCCAGCACCTGCCATTGCAACCCACACGGCTCCT...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCACAATCCAGTCATCTaGTCACAGTCATCTCTTACA +
Preference number: 4 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSHNPVI*SQSSLT
Trigger: TGTAAGAGATGACTGTGAGCAGATGACTGGATTGTG...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATCAGAGGGTGTGGCTaGAGTGCTCCTGGGGGTGCC +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQIRGCG*SAPGGA
Trigger: GGCACCCCCAGGAGCACTGCAGCCACACCCTCTGAT...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCTTGAAGGGCACCCTTaGGGCCATTTCGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYLEGHP*GHFVPG
Trigger: TCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATCTTGAAGGGCACCCTTaGGGCCATTTCGTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINLEGHP*GHFVPG
Trigger: TCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAG...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCCACAGGTAGGGTGGTaGTGGGTTCACAAAGAAGAT +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKPQVGW*WVHKED
Trigger: ATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCACTCGTTGCTATAGGTaGAAGCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSTRCYR*KHLSHT
Trigger: TGTGTGGCTCAGATGCTTCCACCTATAGCAACGAGT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATATCCTGGGCACACACTaGCCTGTAAGCCCCATCACA +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINILGTH*PVSPIT
Trigger: TGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGAT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGCACGGGGATGGGGTCTaGTCACACGGGCCCTGGTGC +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQHGDGV*SHGPWC
Trigger: GCACCAGGGCCCGTGTGACCAGACCCCATCCCCGTG...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCAAGGGTACAGGCCATaGATTCCAGCTCGCACACAC +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYQGYRP*IPARTH
Trigger: GTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGAGGCCTCCTACACCTaGTCGGCAGGAGCACTGCCC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKEASYT*SAGALP
Trigger: GGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTC...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGACACTGCCCACACTTaGGACCAGCCACACCAGGTC +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKDTAHT*DQPHQV
Trigger: GACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATGGACATGTGAGAGTTaGGCAGACACACTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSWTCES*ADTLGK
Trigger: TTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCGCAATGGTCTTCAGCTaGCATTCATTGCCGTATGTG +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSAMVFS*HSLPYV
Trigger: CACATACGGCAATGAATGCCAGCTGAAGACCATTGC...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGCAATGGTCTTCAGCTaGCATTCATTGCCGTATGTG +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDAMVFS*HSLPYV
Trigger: CACATACGGCAATGAATGCCAGCTGAAGACCATTGC...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGGGGTGGGCCAATCATaGGCAGTAGTGCTGGGAGAC +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKGVGQS*AVVLGD
Trigger: GTCTCCCAGCACTACTGCCCATGATTGGCCCACCCC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACCCCTGGAAAGCACATaGCAGGGGGCTGACCCGTGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLPLEST*QGADPW
Trigger: CCACGGGTCAGCCCCCTGCCATGTGCTTTCCAGGGG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGGTGCCCATCCACAATaGCCAGAGCCATGTAGTCTG +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINGAHPQ*PEPCSL
Trigger: CAGACTACATGGCTCTGGCCATTGTGGATGGGCACC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATATAGGTGGAAGCATCTaGGCCACACACAGGAGCTAC +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINIGGSI*ATHRSY
Trigger: GTAGCTCCTGTGTGTGGCTCAGATGCTTCCACCTAT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAAGGAGCACTGCCCTGTaGCTGGGTCACAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKRSTAL*LGHKCR
Trigger: GCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAAGGAGCACTGCCCTGTaGCTGGGTCACAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQRSTAL*LGHKCR
Trigger: GCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCT...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGTATGTGACACCATCTaGTCCACAGACCTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKVCDTI*STDLGR
Trigger: TCTACCAAGGTCTGTGGATCAGATGGTGTCACATAC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACTGTTGGAGCAAGGCCTaGCCCACATCTGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYCWSKA*PTSGAW
Trigger: CCAGGCACCAGATGTGGGTCAGGCCTTGCTCCAACA...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATCCCTGTGCTCCCTGTaGGCCCTGACTCGAAGCCAG +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKSLCSL*ALTRSQ
Trigger: CTGGCTTCGAGTCAGGGCTCACAGGGAGCACAGGGA...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCAACTTCTTAAAGATGTaGTCCTGGTTGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSNFLKM*SWLAQA
Trigger: TGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTT...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATCCCATTCTTCACTGTaGATGTTGCCCCAAATGCAC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSSHSSL*MLPQMH
Trigger: GTGCATTTGGGGCAACATGCACAGTGAAGAATGGGA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAACGGCTCACACGGCCCTaGACGGGCCTCCTCAATTTG +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQRLTRP*TGLLNL
Trigger: CAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCG...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGGAGCCGTGTGGGTTaGAATGGCAGGTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQRSRVG*NGRCWD
Trigger: GTCCCAGCACCTGCCATTGCAACCCACACGGCTCCT...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGGTCGGCAGGAGCACTaGCCTGTGACTGGGTCACAA +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYGRQEH*PVTGSQ
Trigger: TTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATGTCCAACATACGAATaGATCCTTTCAGGCCGATGC +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSCPTYE*ILSGRC
Trigger: GCATCGGCCTGAAAGGATGCATTCGTATGTTGGACA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTGTCCAACATACGAATaGATCCTTTCAGGCCGATGC +
Preference number: 4 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKCPTYE*ILSGRC
Trigger: GCATCGGCCTGAAAGGATGCATTCGTATGTTGGACA...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCATCAAAGTGGTTGCTCTaGAGCGCTTTCTCACTGAAA +
Preference number: 4 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPSKWLL*SAFSLK
Trigger: TTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGA...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATTCACAGGGGCTTCATTaGCCACCTGAAGGGAACCTT +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINSQGLH*PPEGNL
Trigger: AAGGTTCCCTTCAGGTGGGCAATGAAGCCCCTGTGA...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGACCCACATGGCCCTTaGCGGAGTAGGCGGATGCGC +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQDPHGP*RSRRMR
Trigger: GCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGTC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGAGCCACATACGGGCTaGGCTGACTCCACACACTCA +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKEPHTG*ADSTHS
Trigger: TGAGTGTGTGGAGTCAGCCCAGCCCGTATGTGGCTC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCTTTTAAGGACACTCTaGCAACTAAAGTCACAGACA +
Preference number: 4 (lower is better)
Translates to: TTFCLCSTAARTERRPGQLLRTL*QLKSQT
Trigger: TGTCTGTGACTTTAGTTGCCAGAGTGTCCTTAAAAG...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGCCAAGCCCACACCCTaGGCAGCAGTGACATTGTCC +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYAKPTP*AAVTLS
Trigger: GGACAATGTCACTGCTGCCCAGGGTGTGGGCTTGGC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACAGGGCTTGACCATCTaGACACTGCCCACACTTGGG +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKQGLTI*TLPTLG
Trigger: CCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACCACATCAGAGGGTGTaGCTGCAGTGCTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLPHQRV*LQCSWG
Trigger: CCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAAGTGAACATCCACAATaGCACGGACTAATTTGCCAG +
Preference number: 4 (lower is better)
Translates to: DGKEARPAVLLANVQSRKSEHPQ*HGLICQ
Trigger: CTGGCAAATTAGTCCGTGCCATTGTGGATGTTCACT...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAGGAATCACAGGACTTTaGGGGCCGTTGCGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLGITGL*GPLRAW
Trigger: CCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCC...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACCGTGGAGGCAAGGCTaGGAATCACAGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKPWRQG*ESQDFG
Trigger: CCCAAAGTCCTGTGATTCCCAGCCTTGCCTCCACGG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCTCAGCTCCAGCTGCTaGTTGTTGATGTCCAACATA +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHLSSSC*LLMSNI
Trigger: TATGTTGGACATCAACAACCAGCAGCTGGAGCTGAG...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTCAGAGGGCCCCGCCATaGCAGGGGTTAGGTGAGCAG +
Preference number: 4 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCQRAPP*QGLGEQ
Trigger: CTGCTCACCTAACCCCTGCCATGGCGGGGCCCTCTG...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGCCAAAGCGGCCAGGTaGGCACTGACAGAGGAACAC +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYAKAAR*ALTEEH
Trigger: GTGTTCCTCTGTCAGTGCCCACCTGGCCGCTTTGGC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATACAGGCACTCATAAGTaGCTTCCCTCGGGATACAGG +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYTGTHK*LPSGYR
Trigger: CCTGTATCCCGAGGGAAGCCACTTATGAGTGCCTGT...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATGGTTGGCACAGGCATaGCGGAGCAGCTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKWLAQA*RSSWHS
Trigger: TGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCA...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAATGGTTGGCACAGGCATaGCGGAGCAGCTGGCACTCA +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQWLAQA*RSSWHS
Trigger: TGAGTGCCAGCTGCTCCGTCATGCCTGTGCCAACCA...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCT +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDPRQAP*AATYSS
Trigger: AGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGG...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACAGGAGCACTGCCCTGTaGCTGGGTCACAAGTGCCGC +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNRSTAL*LGHKCR
Trigger: GCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAAGATGGCCCAGGGCTTaGCCATCTGGACACTGCCCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKRWPRA*PSGHCP
Trigger: TGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGTATGTGACACCATCTaGTCCACAGACCTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVVCDTI*STDLGR
Trigger: TCTACCAAGGTCTGTGGATCAGATGGTGTCACATAC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGTGGTGGGGTCAAAGTaGACATCCACAATGGCACGG +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKVVGSK*TSTMAR
Trigger: CCGTGCCATTGTGGATGTTCACTTTGACCCCACCAC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTATGTTGGAGCAAGGCCTaGCCCACATCTGGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLCWSKA*PTSGAW
Trigger: CCAGGCACCAGATGTGGGTCAGGCCTTGCTCCAACA...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACACGGAGGCACCAGGCTaGTGCCTGGGTCTGTGTTCC +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNTEAPG*CLGLCS
Trigger: GGAACACAGACCCAGGCAGCAGCCTGGTGCCTCCGT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAATCAGGTCTGACATGCTaGCCTGGCAGGGGTCACAAG +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQSGLTC*PGRGHK
Trigger: CTTGTGACCCCTGCCAGGGCAGCATGTCAGACCTGA...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGGTTGCAATGGCAGGTaGTGGGACAGCCAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKGCNGR*WDSQPS
Trigger: GCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACC...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGGTTGCAATGGCAGGTaGTGGGACAGCCAGCCAAGC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQGCNGR*WDSQPS
Trigger: GCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGGTCGGCAGGAGCACTaGCCTGTGACTGGGTCACAA +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQGRQEH*PVTGSQ
Trigger: TTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACCAGCGTGCTCTCAATaGTCCTTGCAGTCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKPACSQ*SLQSPQ
Trigger: TTGGGGAGACTGCAAGGAGCATTGAGAGCACGCTGG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACTGACCCACATCTGGTaGCTGGAAGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKLTHIW*LEGCGG
Trigger: CCCACCACAGCCTTCCAGGCACCAGATGTGGGTCAG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAACTGACCCACATCTGGTaGCTGGAAGGCTGTGGTGGG +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQLTHIW*LEGCGG
Trigger: CCCACCACAGCCTTCCAGGCACCAGATGTGGGTCAG...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCAGAGGCCTCCTCACTaGCAGGGCCCACGGCCTGGA +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNQRPPH*QGPRPG
Trigger: TCCAGGCCGTGGGCCCTGGCAGTGAGGAGGCCTCTG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACTTTCTCACAGACAGTaGCAGCCCTGCCTGCAGTAC +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKLSHRQ*QPCLQY
Trigger: GTACTGCAGGCAGGGCTGGCACTGTCTGTGAGAAAG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTACACAGCACCAGCCCCTaGGTGGCCTCAGTGCGTAAG +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLHSTSP*VASVRK
Trigger: CTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTG...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACAGCCCACAAAACCCGTaGCATAGGCCTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYSPQNP*HRPWGE
Trigger: CTCTCCCCAAGGCCTATGGCACGGGTTTTGTGGGCT...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACACCAGGCTGCTGCCTaGGTCTGTGTTCCAGTGGCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKHQAAA*VCVPVA
Trigger: TGCCACTGGAACACAGACCCAGGCAGCAGCCTGGTG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACCGTGTGGGTTGCAATaGCAGGTGCTGGGACAGCCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKPCGLQ*QVLGQP
Trigger: TGGCTGTCCCAGCACCTGCCATTGCAACCCACACGG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTGGACATGTGAGAGTTaGGCAGACACACTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYWTCES*ADTLGK
Trigger: TTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGCTCAGGATATGCCTTaGGGTGGTCATAGATGCAGA +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYAQDMP*GGHRCR
Trigger: TCTGCATCTATGACCACCCCAAGGCATATCCTGAGC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACCCACATCAGAGGGTGTaGCTGCAGTGCTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNPHQRV*LQCSWG
Trigger: CCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGG...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGCCACATCAGAGGGTGTaGCTGCAGTGCTCCTGGGGG +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQPHQRV*LQCSWG
Trigger: CCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGG...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAGGAAGCCCTCTCGATaGGTGGCCCGTGGGTCACCA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLRKPSR*VARGSP
Trigger: TGGTGACCCACGGGCCACCCATCGAGAGGGCTTCCT...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACAGTGAACATCCACAATaGCACGGACTAATTTGCCAG +
Preference number: 4 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHSEHPQ*HGLICQ
Trigger: CTGGCAAATTAGTCCGTGCCATTGTGGATGTTCACT...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAATGGCAGCTCAGAGAGTaGGGCAGGGTCAAAGTCCAA +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKWQLRE*GRVKVQ
Trigger: TTGGACTTTGACCCTGCCCCACTCTCTGAGCTGCCA...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071248.12
CDS-3UTR CCA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTACTCAGCTCCAGCTGCTaGTTGTTGATGTCCAACATA +
Preference number: 4 (lower is better)
Translates to: SLASTSSLRGQANTFWEVLSSSC*LLMSNI
Trigger: TATGTTGGACATCAACAACCAGCAGCTGGAGCTGAG...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTTCACCCGGCAAATATaGTTCAGGTCTGACATGCTG +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYFTRQI*FRSDML
Trigger: CAGCATGTCAGACCTGAATCATATTTGCCGGGTGAA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAATCTCGAGTCTGGCATTaGCCAGAGCGCACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQSRVWH*PERTFW
Trigger: CCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGA...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACACACACTGCCGTAAGTaGCACCATCACTGCCGCACA +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYTHCRK*HHHCRT
Trigger: TGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGT...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAATTTGTACCTGCTGCTaGCAGGCAGCCTCTCGGAGC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKICTCC*QAASRS
Trigger: GCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAAT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACC +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQTRPVF*VLIPDT
Trigger: GGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGT...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGCAGCAGCCCAAAGGTaGGTTGTAACAGGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYAAAQR*VVTGSP
Trigger: AGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGCAGCGCTTTCTCACTaGAAAGGGCCCGGGAATCCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKAALSH*KGPGNP
Trigger: TGGATTCCCGGGCCCTTTTCAGTGAGAAAGCGCTGC...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCCTCCACTGTGCCGGTaGGCACCACGTTCGCCTCCT +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNPPLCR*APRSPP
Trigger: AGGAGGCGAACGTGGTGCTCACCGGCACAGTGGAGG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGATTCAGGTCTGACATaGTGCCCTGGCAGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQDSGLT*CPGRGH
Trigger: GTGACCCCTGCCAGGGCAGCATGTCAGACCTGAATC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGGTCGGCAGGAGCACTaGCCTGTGACTGGGTCACAA +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQGRQEH*PVTGSQ
Trigger: TTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACCAGTGAGGGTGTCTTaGCATCTGAGCAGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKPVRVS*HLSSSP
Trigger: TGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAAGTGCCAGCCCTGCCTaGAGTACAGCTGCAGCTGAA +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQSASPA*STAAAE
Trigger: TTCAGCTGCAGCTGTACTGCAGGCAGGGCTGGCACT...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAGGCACAGAGGGGAGCTaGACTTTCTCACAGACAGTG +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQGTEGS*TFSQTV
Trigger: CACTGTCTGTGAGAAAGTGCAGCTCCCCTCTGTGCC...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACGCCTTGGGGAGAGCCTaGCCCACAGGAAGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNALGRA*PTGSFC
Trigger: ACAGAAGCTTCCTGTGGGGCAGGCTCTCCCCAAGGC...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAAGCCCACAAAACCCGTaGCATAGGCCTTGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLSPQNP*HRPWGE
Trigger: CTCTCCCCAAGGCCTATGGCACGGGTTTTGTGGGCT...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATACTCGTTGCTATAGGTaGAAGCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINTRCYR*KHLSHT
Trigger: TGTGTGGCTCAGATGCTTCCACCTATAGCAACGAGT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAATCTGACATGCTGCCCTaGCAGGGGTCACAAGGACCA +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQSDMLP*QGSQGP
Trigger: TGGTCCTTGTGACCCCTGCCAGGGCAGCATGTCAGA...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACCTTTTAAGGACACTCTaGCAACTAAAGTCACAGACA +
Preference number: 4 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDLLRTL*QLKSQT
Trigger: TGTCTGTGACTTTAGTTGCCAGAGTGTCCTTAAAAG...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGCCAAGCCCACACCCTaGGCAGCAGTGACATTGTCC +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQAKPTP*AAVTLS
Trigger: GGACAATGTCACTGCTGCCCAGGGTGTGGGCTTGGC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGAGGCCTCCTACACCTaGTCGGCAGGAGCACTGCCC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNEASYT*SAGALP
Trigger: GGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYVGQTH*AKPASS
Trigger: AGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAAC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAGGTAGGCTCGGAGGGTaGGGAAGGCCAAGAAGGAGT +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLGRLGG*GRPRRS
Trigger: ACTCCTTCTTGGCCTTCCCCACCCTCCGAGCCTACC...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGGTAGGCTCGGAGGGTaGGGAAGGCCAAGAAGGAGT +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQGRLGG*GRPRRS
Trigger: ACTCCTTCTTGGCCTTCCCCACCCTCCGAGCCTACC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGGTGCCCATCCACAATaGCCAGAGCCATGTAGTCTG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYGAHPQ*PEPCSL
Trigger: CAGACTACATGGCTCTGGCCATTGTGGATGGGCACC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACTGTGTCCAATTGTGTaGCACCCAGCGGGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLLCPIV*HPAGKS
Trigger: GCTCTTCCCCGCTGGGTGCCACACAATTGGACACAG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACATAGGTGGAAGCATCTaGGCCACACACAGGAGCTAC +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYIGGSI*ATHRSY
Trigger: GTAGCTCCTGTGTGTGGCTCAGATGCTTCCACCTAT...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATACACACTGTCCAGCTaGGCACACAGCCCCAAAGGT +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKYTLSS*AHSPKG
Trigger: ACCTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTA...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACTCCCCAAACAACTCTaGCTTGGGGTCAGCCATCTC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKLPKQL*LGVSHL
Trigger: GAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACGCTTCATTGCCCACCTaGAGGGAACCTTCCCTGTGC +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNASLPT*REPSLC
Trigger: GCACAGGGAAGGTTCCCTTCAGGTGGGCAATGAAGC...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACGGCAGACATTCTTCTTaGACACACAGGAGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNGRHSS*THRRPG
Trigger: GCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCC...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTATCAGGTCTGACATGCTaGCCTGGCAGGGGTCACAAG +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLSGLTC*PGRGHK
Trigger: CTTGTGACCCCTGCCAGGGCAGCATGTCAGACCTGA...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGATTCAGGTCTGACATaGTGCCCTGGCAGGGGTCAC +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQDSGLT*CPGRGH
Trigger: GTGACCCCTGCCAGGGCAGCATGTCAGACCTGAATC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCTTCACTGTGCATGTTaGCCCAAATGCACACTGCGC +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYLHCAC*PKCTLR
Trigger: GCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGTACAGGCGTGGACATaGAGCTCACATTCACTAGCA +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKVQAWT*SSHSLA
Trigger: TGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTAC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAGGGTGTGGCTGCAGTaGTCCTGGGGGTGCCGACTA +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNRVWLQ*SWGCRL
Trigger: TAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTCCAGTGAGGGTGTCTTaGCATCTGAGCAGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCPVRVS*HLSSSP
Trigger: TGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGG...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTACCAGTGAGGGTGTCTTaGCATCTGAGCAGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLPVRVS*HLSSSP
Trigger: TGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGG...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACAGCACGCCCTGGAATaGCTTGGTAGCTGGACAGTT +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLQHALE*LGSWTV
Trigger: AACTGTCCAGCTACCAAGGCATTCCAGGGCGTGCTG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACCAGCGTGCTCTCAATaGTCCTTGCAGTCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLPACSQ*SLQSPQ
Trigger: TTGGGGAGACTGCAAGGAGCATTGAGAGCACGCTGG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAAGGTTGAGCATGGTGTaGGGGACCTTGCGGGATTTC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQRLSMV*GTLRDF
Trigger: GAAATCCCGCAAGGTCCCGCACACCATGCTCAACCT...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGTCTGACATGCTGCCCTaGCAGGGGTCACAAGGACCA +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQSDMLP*QGSQGP
Trigger: TGGTCCTTGTGACCCCTGCCAGGGCAGCATGTCAGA...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTATCTGACATGCTGCCCTaGCAGGGGTCACAAGGACCA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLSDMLP*QGSQGP
Trigger: TGGTCCTTGTGACCCCTGCCAGGGCAGCATGTCAGA...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACAAGGGTACAGGCCATaGATTCCAGCTCGCACACAC +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKQGYRP*IPARTH
Trigger: GTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCACTTTTAAGGACACTCTaGCAACTAAAGTCACAGACA +
Preference number: 4 (lower is better)
Translates to: GKEARPAVLLANVQSRKSLLRTL*QLKSQT
Trigger: TGTCTGTGACTTTAGTTGCCAGAGTGTCCTTAAAAG...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACGGTCTGAGGTGATGTaGGTAATGGGGTGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKRSEVM*VMGWAN
Trigger: ATTGGCCCACCCCATTACCCACATCACCTCAGACCG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATAGGAAGCCCTCTCGATaGGTGGCCCGTGGGTCACCA +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDRKPSR*VARGSP
Trigger: TGGTGACCCACGGGCCACCCATCGAGAGGGCTTCCT...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGGGGTCAGCCATCTCTaGTGTGTAGAACAGTTCCTG +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYGVSHL*CVEQFL
Trigger: CAGGAACTGTTCTACACACCAGAGATGGCTGACCCC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAGGGGTCAGCCATCTCTaGTGTGTAGAACAGTTCCTG +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQGVSHL*CVEQFL
Trigger: CAGGAACTGTTCTACACACCAGAGATGGCTGACCCC...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAGTGAACATCCACAATaGCACGGACTAATTTGCCAG +
Preference number: 4 (lower is better)
Translates to: KEARPAVLLANVQSRKSYSEHPQ*HGLICQ
Trigger: CTGGCAAATTAGTCCGTGCCATTGTGGATGTTCACT...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGAATCACAGGACTTTaGGGGCCGTTGCGGGCCTGG +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNGITGL*GPLRAW
Trigger: CCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACCCGTGGAGGCAAGGCTaGGAATCACAGGACTTTGGG +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNPWRQG*ESQDFG
Trigger: CCCAAAGTCCTGTGATTCCCAGCCTTGCCTCCACGG...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGTGGCCCTTAAAAGCTaGCACAGAGGGGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCVALKS*HRGELH
Trigger: GTGCAGCTCCCCTCTGTGCCAGCTTTTAAGGGCCAC...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAAAGGCCAAGAAGGAGTaGCCCTTAAAAGCTGGCACA +
Preference number: 4 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKKAKKE*PLKAGT
Trigger: TGTGCCAGCTTTTAAGGGCCACTCCTTCTTGGCCTT...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATACTTGGCCCCACCCCTaGAAAGCACATGGCAGGGGG +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDTWPHP*KAHGRG
Trigger: CCCCCTGCCATGTGCTTTCCAGGGGTGGGGCCAAGT...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAGGTGCCCATCCACAATaGCCAGAGCCATGTAGTCTG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLGAHPQ*PEPCSL
Trigger: CAGACTACATGGCTCTGGCCATTGTGGATGGGCACC...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACTGGCCACAGGTAGGGTaGTGCTGGGTTCACAAAGAA +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYWPQVG*CWVHKE
Trigger: TTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCA...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGGCGCTGCTGTGAAGTaGATCCCAGGTTTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYGAAVK*IPGLSS
Trigger: AGAAGACAAACCTGGGATCCACTTCACAGCAGCGCC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACACACACTGCCGTAAGTaGCACCATCACTGCCGCACA +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNTHCRK*HHHCRT
Trigger: TGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAACTCCGTGCTATAGGTaGCTCCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKTPCYR*LHLSHT
Trigger: TGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAACTCCGTGCTATAGGTaGCTCCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLTPCYR*LHLSHT
Trigger: TGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGT...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAGGAGCCGTGTGGGTTaGAATGGCAGGTGCTGGGAC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNRSRVG*NGRCWD
Trigger: GTCCCAGCACCTGCCATTGCAACCCACACGGCTCCT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAACTTTGCCACGTGCATTaGCATTGTAGAGCAGCAGTC +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQLCHVH*HCRAAV
Trigger: GACTGCTGCTCTACAATGGCAATGCACGTGGCAAAG...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACATACAAAGTCCCCCTTaGCATCCGTCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYIQSPP*HPSSAH
Trigger: ATGGGCAGAAGACGGATGGCAAGGGGGACTTTGTAT...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGCTGGCGGCAGGCAATaGTCTTCAGCTGGCATTCAT +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQAGGRQ*SSAGIH
Trigger: ATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAGCTCAGGATATGCCTTaGGGTGGTCATAGATGCAGA +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQAQDMP*GGHRCR
Trigger: TCTGCATCTATGACCACCCCAAGGCATATCCTGAGC...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGCTCAGGATATGCCTTaGGGTGGTCATAGATGCAGA +
Preference number: 4 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYAQDMP*GGHRCR
Trigger: TCTGCATCTATGACCACCCCAAGGCATATCCTGAGC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGCGGTCTGAGGTGATGTaGGTAATGGGGTGGGCCAAT +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQRSEVM*VMGWAN
Trigger: ATTGGCCCACCCCATTACCCACATCACCTCAGACCG...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATTGGCCACAGCAGCTGTaGTTCCTGTTGCAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNWPQQL*FLLQLP
Trigger: CGGGAGCTGCAACAGGAACCACAGCTGCTGTGGCCA...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGGTTTGTAGTTGCTaGGGAAAAGCAGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKQVCSC*GKAAPQ
Trigger: TTGCGGTGCTGCTTTTCCTCAGCAACTACAAACCTG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACAGGTTTGTAGTTGCTaGGGAAAAGCAGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLQVCSC*GKAAPQ
Trigger: TTGCGGTGCTGCTTTTCCTCAGCAACTACAAACCTG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATATTTGTACCTGCTGCTaGCAGGCAGCCTCTCGGAGC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNICTCC*QAASRS
Trigger: GCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAAT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGTAGACTCGTGGGGTaGCAGAAGAGGCAGACAGTC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNGRLVG*QKRQTV
Trigger: GACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTATTAGCTCTGGTTTGGTaGCAGCGTCCTCCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLLALVW*QRPPAD
Trigger: ATCTGCTGGAGGACGCTGTCACCAAACCAGAGCTAA...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTATCATTGTCATACGTGTaGCCATCCTGGGCACACACT +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLSLSYV*PSWAHT
Trigger: AGTGTGTGCCCAGGATGGGCACACGTATGACAATGA...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATCATTGTCATACGTGTaGCCATCCTGGGCACACACT +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKSLSYV*PSWAHT
Trigger: AGTGTGTGCCCAGGATGGGCACACGTATGACAATGA...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGTACAGGCGTGGACATaGAGCTCACATTCACTAGCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKVQAWT*SSHSLA
Trigger: TGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTAC...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACTTTGCCACGTGCATTaGCATTGTAGAGCAGCAGTC +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLLCHVH*HCRAAV
Trigger: GACTGCTGCTCTACAATGGCAATGCACGTGGCAAAG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAATCTCTCTCGAAGGTGTaGAAGCCTTTCAGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQSLSKV*KPFSSR
Trigger: CCTGGAACTGAAAGGCTTGCACACCTTCGAGAGAGA...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTATCTCTCTCGAAGGTGTaGAAGCCTTTCAGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLSLSKV*KPFSSR
Trigger: CCTGGAACTGAAAGGCTTGCACACCTTCGAGAGAGA...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAATCAGCTCAAAGTGGTTaGTCTGCAGCGCTTTCTCAC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQSAQSG*SAALSH
Trigger: GTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGA...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGGGCCACCACATCTTTaGCTTTCAAGTACCGCCACA +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQGPPHL*LSSTAT
Trigger: TGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAATGGACATGTGAGAGTTaGGCAGACACACTGGGCAAA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKWTCES*ADTLGK
Trigger: TTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCA...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCACGGCCTGGATACCTaGATCTGTTGGAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNHGLDT*ICWSKA
Trigger: GGCCTTGCTCCAACAGATCCAGGTATCCAGGCCGTG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATGTGGCCCTTAAAAGCTaGCACAGAGGGGAGCTGCAC +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDVALKS*HRGELH
Trigger: GTGCAGCTCCCCTCTGTGCCAGCTTTTAAGGGCCAC...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAACTCAGCTCCAGCTGCTaGTTGTTGATGTCCAACATA +
Preference number: 4 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQLSSSC*LLMSNI
Trigger: TATGTTGGACATCAACAACCAGCAGCTGGAGCTGAG...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTC +
Preference number: 4 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQKLSSK*LLCSAF
Trigger: GAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTT...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTACAGGTTTGTAGTTGCTaGGGAAAAGCAGCACCGCAA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLQVCSC*GKAAPQ
Trigger: TTGCGGTGCTGCTTTTCCTCAGCAACTACAAACCTG...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATTCTCGAGTCTGGCATTaGCCAGAGCGCACTTTCTGG +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNSRVWH*PERTFW
Trigger: CCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGA...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATTACACACTGTCCAGCTaGGCACACAGCCCCAAAGGT +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNYTLSS*AHSPKG
Trigger: ACCTTTGGGGCTGTGTGCTCAGCTGGACAGTGTGTA...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGCAGCAGCCCAAAGGTaGGTTGTAACAGGAAGCCCT +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNAAAQR*VVTGSP
Trigger: AGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCTCCCCAAACAACTCTaGCTTGGGGTCAGCCATCTC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNLPKQL*LGVSHL
Trigger: GAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACTCATTGTCATACGTGTaGCCATCCTGGGCACACACT +
Preference number: 4 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNSLSYV*PSWAHT
Trigger: AGTGTGTGCCCAGGATGGGCACACGTATGACAATGA...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGTCATTGTCATACGTGTaGCCATCCTGGGCACACACT +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQSLSYV*PSWAHT
Trigger: AGTGTGTGCCCAGGATGGGCACACGTATGACAATGA...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGATACAAAGTCCCCCTTaGCATCCGTCTTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQIQSPP*HPSSAH
Trigger: ATGGGCAGAAGACGGATGGCAAGGGGGACTTTGTAT...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCT +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNVGQTH*AKPASS
Trigger: AGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAAC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTAACACTCTCCCGGCATaGACCAAGACTCTGAATGGA +
Preference number: 4 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCNTLPA*TKTLNG
Trigger: TCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTT...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CCA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTCAAACAACTCTGACTTaGGGTCAGCCATCTCTGGTG +
Preference number: 4 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCQTTLT*GQPSLV
Trigger: CACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTG...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATACTCCGTGCTATAGGTaGCTCCATCTGAGCCACACA +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNTPCYR*LHLSHT
Trigger: TGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATTTAGCTCTGGTTTGGTaGCAGCGTCCTCCAGCAGAT +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDLALVW*QRPPAD
Trigger: ATCTGCTGGAGGACGCTGTCACCAAACCAGAGCTAA...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAAACTTCTTAAAGATGTaGTCCTGGTTGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKNFLKM*SWLAQA
Trigger: TGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTAAACTTCTTAAAGATGTaGTCCTGGTTGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLNFLKM*SWLAQA
Trigger: TGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTT...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATTCACAGGGGCTTCATTaGCCACCTGAAGGGAACCTT +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDSQGLH*PPEGNL
Trigger: AAGGTTCCCTTCAGGTGGGCAATGAAGCCCCTGTGA...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAACTTCTTAAAGATGTaGTCCTGGTTGGCACAGGCA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLNFLKM*SWLAQA
Trigger: TGCCTGTGCCAACCAGGAGCACATCTTTAAGAAGTT...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR GCA 90 bp CCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGATGATGTCCCAATTATTACACAATCCAGTCATCTaGTCACAGTCATCTCTTACA +
Preference number: 4 (lower is better)
Translates to: PPGTGKHILGSKMMSQLLHNPVI*SQSSLT
Trigger: TGTAAGAGATGACTGTGAGCAGATGACTGGATTGTG...TAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCAATTACCACCTTGTTaGCACCATCCAGCAGGCTCT +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNQLPPC*HHPAGS
Trigger: AGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTC +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNKLSSK*LLCSAF
Trigger: GAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
3UTR CAA 72 bp TTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTaGGGAAGTAAGATGATGTCCCAATTATTATCAGTT +
Preference number: 4 (lower is better)
Translates to: FYFQPPGTGKHI*GSKMMSQLLSV
Trigger: AACTGATAATAATTGGGACATCATCTTACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR TCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATTTCACCCGGCAAATATaGTTCAGGTCTGACATGCTG +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDFTRQI*FRSDML
Trigger: CAGCATGTCAGACCTGAATCATATTTGCCGGGTGAA...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATGTATGTGACACCATCTaGTCCACAGACCTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDVCDTI*STDLGR
Trigger: TCTACCAAGGTCTGTGGATCAGATGGTGTCACATAC...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR TCA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGTATGTGACACCATCTaGTCCACAGACCTTGGTAGA +
Preference number: 4 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNVCDTI*STDLGR
Trigger: TCTACCAAGGTCTGTGGATCAGATGGTGTCACATAC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR GCA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTACACAATCCAGTCATCTaGTCACAGTCATCTCTTACA +
Preference number: 4 (lower is better)
Translates to: TIIITMDQLRDALILDQLHNPVI*SQSSLT
Trigger: TGTAAGAGATGACTGTGAGCAGATGACTGGATTGTG...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCGGACACTGCCCACACTaGGGACCAGCCACACCAGGT +
Preference number: 5 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESGHCPH*GPATPG
Trigger: ACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCC...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAGGGCCCATCACCCACTaGAAGGGCACCCTTGCGGCC +
Preference number: 5 (lower is better)
Translates to: CPDGKEARPAVLLANVQSGPITH*KGTLAA
Trigger: GGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCC...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCAAGATGGCCCAGGGCTaGACCATCTGGACACTGCCC +
Preference number: 5 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESKMAQG*TIWTLP
Trigger: GGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTT...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp GCCATAGGTAGCAGTGGAGCCAAGGTAGGGCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCTTGCCGCGCTTCACATCTGGCCTTC +
Preference number: 5 (lower is better)
Translates to: AIGSSGAKVGPRQAP*AATYSSCRASHLAF
Trigger: GAAGGCCAGATGTGAAGCGCGGCAAGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGGCCCTACCTTGGCTCCACTGCTACCTATGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp GGCAGCTCAGAGAGTGGGGCAGGGTCAAAGTCCAAGAATCGCACATaGTCCCGCAGAGGCCTCCTCACTGCCAGGGCCCACGGCCTGGAT +
Preference number: 5 (lower is better)
Translates to: GSSESGAGSKSKNRT*SRRGLLTARAHGLD
Trigger: ATCCAGGCCGTGGGCCCTGGCAGTGAGGAGGCCTCTGCGGGAGCATGTGCGATTCTTGGACTTTGACCCTGCCCCACTCTCTGAGCTGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071248.12
CDS GCA 90 bp ACAACAGGAGCCTCGCCATCCACAGAAAGTGTGCCCTGCCGCCAATaGCGTGACAACTCGAGGCGGTGCCACCGTCCCGGTTCCACTGGC +
Preference number: 5 (lower is better)
Translates to: TTGASPSTESVPCRQ*RDNSRRCHRPGSTG
Trigger: GCCAGTGGAACCGGGACGGTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGCGAGGCTCCTGTTGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp GAGGCAAGGCTGGGAATCACAGGACTTTGGGGGCCGTTGCGGGCCTaGAGTCCGAGGTCGGTCAATACTGGCGGTAGTGGTTGGTGGCCG +
Preference number: 5 (lower is better)
Translates to: EARLGITGLWGPLRA*SPRSVNTGGSGWWP
Trigger: CGGCCACCAACCACTACCGCCAGTATTGACCGACCTCGGACTCCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCCCAGCCTTGCCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CTGGCAGGTACCTCCGTGGAGGCAAGGCTGGGAATCACAGGACTTTaGGGGCCGTTGCGGGCCTGGAGTCCGAGGTCGGTCAATACTGGC +
Preference number: 5 (lower is better)
Translates to: LAGTSVEARLGITGL*GPLRAWSPRSVNTG
Trigger: GCCAGTATTGACCGACCTCGGACTCCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCCCAGCCTTGCCTCCACGGAGGTACCTGCCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCGCAGCCATAGGGGGTTaGGGCACAGTGTGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASAAIGG*GTVWGG
Trigger: GCCTCCCCACACTGTGCCCAAACCCCCTATGGCTGC...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAGGACACTGCCCACACTaGGGACCAGCCACACCAGGT +
Preference number: 5 (lower is better)
Translates to: CPDGKEARPAVLLANVQSGHCPH*GPATPG
Trigger: ACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCC...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CCTCCGTGGAGGCAAGGCTGGGAATCACAGGACTTTGGGGGCCGTTaGGGGCCTGGAGTCCGAGGTCGGTCAATACTGGCGGTAGTGGTT +
Preference number: 5 (lower is better)
Translates to: PPWRQGWESQDFGGR*GPGVRGRSILAVVV
Trigger: AACCACTACCGCCAGTATTGACCGACCTCGGACTCCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCCCAGCCTTGCCTCCACGGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CTGAGCAGCAGCCCAAAGGTGAGTTGTAACAGGAAGCCCTCTCGATaGGTGGCCCGTGGGTCACCACAACGCTGCCCACCGGGGGCTCAA +
Preference number: 5 (lower is better)
Translates to: LSSSPKVSCNRKPSR*VARGSPQRCPPGAQ
Trigger: TTGAGCCCCCGGTGGGCAGCGTTGTGGTGACCCACGGGCCACCCATCGAGAGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGCTCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CTACCACGTCCCGCAGACAGCCCACAAAACCCGTGCCATAGGCCTTaGGGAGAGCCTGCCCCACAGGAAGCTTCTGTAGGCCTCCAAGCC +
Preference number: 5 (lower is better)
Translates to: LPRPADSPQNPCHRP*GEPAPQEASVGLQA
Trigger: GGCTTGGAGGCCTACAGAAGCTTCCTGTGGGGCAGGCTCTCCCCAAGGCCTATGGCACGGGTTTTGTGGGCTGTCTGCGGGACGTGGTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp ACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGGCAGCCATAGGGGGTTaGGGCACAGTGTGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: TTFCLCSTAARTERRPGQAAIGG*GTVWGG
Trigger: GCCTCCCCACACTGTGCCCAAACCCCCTATGGCTGC...CTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTCTGCAGCTGAAACCCTaGCCAGAATCCAGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRLQLKP*PESRSW
Trigger: CCAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAG...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACCCCACACCAGAGCTTaGAACCACAGCCCTCTGCCA +
Preference number: 5 (lower is better)
Translates to: CPDGKEARPAVLLANVQSPHTRA*NHSPLP
Trigger: TGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGGTCTTAGCTCTGGTTaGGTGACAGCGTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: AQLPGRKGGQASSPSGQRGLSSG*VTASSS
Trigger: GCTGGAGGACGCTGTCACCAAACCAGAGCTAAGACC...ACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CTTTCACCTACAACAGGAGCCTCGCCATCCACAGAAAGTGTGCCCTaGCGCCAATGCCGTGACAACTCGAGGCGGTGCCACCGTCCCGGT +
Preference number: 5 (lower is better)
Translates to: LSPTTGASPSTESVP*RQCRDNSRRCHRPG
Trigger: ACCGGGACGGTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGCGAGGCTCCTGTTGTAGGTGAAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CCTGAGGCCTCCTACACCTGGTCGGCAGGAGCACTGCCCTGTGACTaGGTCACAAGTGCCGCTATAGGAGCCGTGTGGGTTGCAATGGCA +
Preference number: 5 (lower is better)
Translates to: PEASYTWSAGALPCD*VTSAAIGAVWVAMA
Trigger: TGCCATTGCAACCCACACGGCTCCTATAGCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACCAGGTGTAGGAGGCCTCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAACGCCCTGGAATGCCTaGGTAGCTGGACAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: CPDGKEARPAVLLANVQSTPWNA*VAGQLE
Trigger: CTCCAACTGTCCAGCTACCAAGGCATTCCAGGGCGT...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCACTGCAGCTGAAACCCTaGCCAGAATCCAGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: CPDGKEARPAVLLANVQSLQLKP*PESRSW
Trigger: CCAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAG...TGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGCGCCCCGAGCCAGCTaGCTGAAGTCAGGAGCTCCC +
Preference number: 5 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDAPRAS*LKSGAP
Trigger: GGGAGCTCCTGACTTCAGCAAGCTGGCTCGGGGCGC...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS TCA 90 bp TCAGAGGGTGTGGCTGCAGTGCTCCTGGGGGTGCCGACTACGGTCTaGGGTGATGTGGGTAATGGGGTGGGCCAATCATGGGCAGTAGTG +
Preference number: 5 (lower is better)
Translates to: SEGVAAVLLGVPTTV*GDVGNGVGQSWAVV
Trigger: CACTACTGCCCATGATTGGCCCACCCCATTACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp TTCTGCCAACAGGCCGGCTGGTGTAACTGGGGTAGACTCGTGGGGTaGCAGAAGAGGCAGACAGTCGGCTCACAGTGGTGGCTCTGGCTG +
Preference number: 5 (lower is better)
Translates to: FCQQAGWCNWGRLVG*QKRQTVGSQWWLWL
Trigger: CAGCCAGAGCCACCACTGTGAGCCGACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGTTACACCAGCCGGCCTGTTGGCAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp TGCGGGACCGGAGATTCCCCTAGCACACGGGGCCCATCACCCACTTaGAGGGCACCCTTGCGGCCATTTCGTTCCAGGAATACCCTAACC +
Preference number: 5 (lower is better)
Translates to: CGTGDSPSTRGPSPT*RAPLRPFRSRNTLT
Trigger: GGTTAGGGTATTCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCCCGTGTGCTAGGGGAATCTCCGGTCCCGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS GCA 90 bp CCGCTGGCACTCGCACACAGCTTTCCCATTCTTCACTGTGCATGTTaGCCCAAATGCACACTGCGCTCCACGGCACGGGGATGGGGTCTG +
Preference number: 5 (lower is better)
Translates to: PLALAHSFPILHCAC*PKCTLRSTARGWGL
Trigger: CAGACCCCATCCCCGTGCCGTGGAGCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGAATGGGAAAGCTGTGTGCGAGTGCCAGCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CAAGACTGGCCACATCAGAGGGTGTGGCTGCAGTGCTCCTGGGGGTaGCGACTACGGTCTGAGGTGATGTGGGTAATGGGGTGGGCCAAT +
Preference number: 5 (lower is better)
Translates to: QDWPHQRVWLQCSWG*RLRSEVMWVMGWAN
Trigger: ATTGGCCCACCCCATTACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGGCCAGTCTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp TCGGACTTTCACCTACAACAGGAGCCTCGCCATCCACAGAAAGTGTaGCCTGCCGCCAATGCCGTGACAACTCGAGGCGGTGCCACCGTC +
Preference number: 5 (lower is better)
Translates to: SDFHLQQEPRHPQKV*PAANAVTTRGGATV
Trigger: GACGGTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGCGAGGCTCCTGTTGTAGGTGAAAGTCCGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CATCGGCTGAAGGTACACAGGTACTACCGAAACTGCAGGTCACATTaGCACAGGGGTCCCGGGACCCACATGGCCCTTGGCGGAGTAGGC +
Preference number: 5 (lower is better)
Translates to: HRLKVHRYYRNCRSH*HRGPGTHMALGGVG
Trigger: GCCTACTCCGCCAAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp GGCCAATCATGGGCAGTAGTGCTGGGAGACAGAGGAAGGCTGCTGTaGGGAGACGCCAGTGTCCTGCTCAGGATATGCCTTGGGGTGGTC +
Preference number: 5 (lower is better)
Translates to: GQSWAVVLGDRGRLL*GDASVLLRICLGVV
Trigger: GACCACCCCAAGGCATATCCTGAGCAGGACACTGGCGTCTCCCCACAGCAGCCTTCCTCTGTCTCCCAGCACTACTGCCCATGATTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCAGTAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGAC +
Preference number: 5 (lower is better)
Translates to: LFVSAAQLPGRKGGQASSKLQVT*AQGSRD
Trigger: GTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTT...ACTGCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGCAGCCATAGGGGGTTaGGGCACAGTGTGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDAAIGG*GTVWGG
Trigger: GCCTCCCCACACTGTGCCCAAACCCCCTATGGCTGC...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp CAAGGGTACAGGCCATGGATTCCAGCTCGCACACACTGCCGTAAGTaGCACCATCACTGCCGCACACAGGATCGTAGCCGCCCGAGCACA +
Preference number: 5 (lower is better)
Translates to: QGYRPWIPARTHCRK*HHHCRTQDRSRPST
Trigger: TGTGCTCGGGCGGCTACGATCCTGTGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGTGCGAGCTGGAATCCATGGCCTGTACCCTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp GGGGAAACCCCAGGAGCAACACTCTCCCGGCATGGACCAAGACTCTaGATGGAGATGTCCAGACGCTGGCGGCAGGCAATGGTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: GETPGATLSRHGPRL*MEMSRRWRQAMVFS
Trigger: GCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTTGCTCCTGGGGTTTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp ACCCACATGGCCCTTGGCGGAGTAGGCGGATGCGCCGTTGCTGGTTaGACTGTGCACGCTGTAGCTCACACTCGTTGCTATAGGTGGAAG +
Preference number: 5 (lower is better)
Translates to: THMALGGVGGCAVAG*TVHAVAHTRCYRWK
Trigger: CTTCCACCTATAGCAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp AGGCGGTCTGTCCATCGGCTGAAGGTACACAGGTACTACCGAAACTaGAGGTCACATTGGCACAGGGGTCCCGGGACCCACATGGCCCTT +
Preference number: 5 (lower is better)
Translates to: RRSVHRLKVHRYYRN*RSHWHRGPGTHMAL
Trigger: AAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGACAGACCGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp AGCACACCCGCTGGCACTCGCACACAGCTTTCCCATTCTTCACTGTaGATGTTGCCCCAAATGCACACTGCGCTCCACGGCACGGGGATG +
Preference number: 5 (lower is better)
Translates to: STPAGTRTQLSHSSL*MLPQMHTALHGTGM
Trigger: CATCCCCGTGCCGTGGAGCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGAATGGGAAAGCTGTGTGCGAGTGCCAGCGGGTGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CGTAGTTCTGCCAACAGGCCGGCTGGTGTAACTGGGGTAGACTCGTaGGGTGACAGAAGAGGCAGACAGTCGGCTCACAGTGGTGGCTCT +
Preference number: 5 (lower is better)
Translates to: RSSANRPAGVTGVDS*GDRRGRQSAHSGGS
Trigger: AGAGCCACCACTGTGAGCCGACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGTTACACCAGCCGGCCTGTTGGCAGAACTACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AGCACCAGCCCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTCTCACTGAAAAGGGCCCGGGAATCC +
Preference number: 5 (lower is better)
Translates to: STSPCVASVRKLSSK*LLCSAFSLKRARES
Trigger: GGATTCCCGGGCCCTTTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp TGGGGGTCCAGGCTAGCCTGGGGTGAGGCTGGCCCTCAGCACACACAGGAGAGCTTCAGCTGGCATTCATaGCCGTATGTGACACCATCT +
Preference number: 5 (lower is better)
Translates to: WGSRLAWGEAGPQHTQESFSWHS*PYVTPS
Trigger: AGATGGTGTCACATACGGCAATGAATGCCAGCTGAA...GCTCTCCTGTGTGTGCTGAGGGCCAGCCTCACCCCAGGCTAGCCTGGACCCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp TTAGGTGAGCAGGGATGGTCTCCGCATTCCCCCACACCAGAGCTTTaGACCACAGCCCTCTGCCAATCGCTCAGCTCCAGCTGCTGGTTG +
Preference number: 5 (lower is better)
Translates to: LGEQGWSPHSPTPEL*TTALCQSLSSSCWL
Trigger: CAACCAGCAGCTGGAGCTGAGCGATTGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGGGAATGCGGAGACCATCCCTGCTCACCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp CGGGATTTCGGAGATTCCCCTAGCACACGGGGCCCATCACCCACTTaGAGGGCACCCTTGCGGCCATTTCGTTCCAGGAATACCCTAACC +
Preference number: 5 (lower is better)
Translates to: RDFGDSPSTRGPSPT*RAPLRPFRSRNTLT
Trigger: GGTTAGGGTATTCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCCCGTGTGCTAGGGGAATCTCCGAAATCCCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS GCA 90 bp CACAGAGGGGAGCTGCACTTTCTCACAGACAGTGCCAGCCCTGCCTaGAGTACAGCTGCAGCTGAAACCCTTGCCAGAATCCAGGTCCTG +
Preference number: 5 (lower is better)
Translates to: HRGELHFLTDSASPA*STAAAETLARIQVL
Trigger: CAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAGCTGTACTGCAGGCAGGGCTGGCACTGTCTGTGAGAAAGTGCAGCTCCCCTCTGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp GCGCCAACAGTCATTGTCATACGTGTGCCCATCCTGGGCACACACTaGCCTGTAAGCCCCATCACAGGTGACGCGATCGCAGGAACAGTG +
Preference number: 5 (lower is better)
Translates to: APTVIVIRVPILGTH*PVSPITGDAIAGTV
Trigger: CACTGTTCCTGCGATCGCGTCACCTGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGATGGGCACACGTATGACAATGACTGTTGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp TGTGGGATCTGCTTCACAGCCAAGATGGCCCAGGGCTTGACCATCTaGACACTGCCCACACTTGGGACCAGCCACACCAGGTCTACAGGA +
Preference number: 5 (lower is better)
Translates to: CGICFTAKMAQGLTI*TLPTLGTSHTRSTG
Trigger: TCCTGTAGACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTTGGCTGTGAAGCAGATCCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AAACCCCAGGAGCAACACTCTCCCGGCATGGACCAAGACTCTGAATaGAGATGTCCAGACGCTGGCGGCAGGCAATGGTCTTCAGCTGGC +
Preference number: 5 (lower is better)
Translates to: KPQEQHSPGMDQDSE*RCPDAGGRQWSSAG
Trigger: GCCAGCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTTGCTCCTGGGGTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AGATGCAGATGTAGGGGAAACCCCAGGAGCAACACTCTCCCGGCATaGACCAAGACTCTGAATGGAGATGTCCAGACGCTGGCGGCAGGC +
Preference number: 5 (lower is better)
Translates to: RCRCRGNPRSNTLPA*TKTLNGDVQTLAAG
Trigger: GCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTTGCTCCTGGGGTTTCCCCTACATCTGCATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp CTGCACGTTCTCCAACCTTTCCAATCCACAGCACCAGCCCCTGCGTaGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTTGCTCTGCAGCG +
Preference number: 5 (lower is better)
Translates to: LHVLQPFQSTAPAPA*PQCVSSAQSGCSAA
Trigger: CGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTGGATTGGAAAGGTTGGAGAACGTGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCAAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGAC +
Preference number: 5 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPKLQVT*AQGSRD
Trigger: GTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTT...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTG +
Preference number: 5 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSSSPLP*VLPDSL
Trigger: CAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGA...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTG +
Preference number: 5 (lower is better)
Translates to: DGKEARPAVLLANVQSRKSSPLP*VLPDSL
Trigger: CAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGA...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACTCCAGTGAGGGTGTCTaGCCATCTGAGCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDSSEGV*PSEQQP
Trigger: GGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGA...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp CCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACGGAAAGGAGGCCAGGCCAGCCCAAACAACTCTGACTaGGGGTCAGCCATCTCTGGT +
Preference number: 5 (lower is better)
Translates to: PLFVSAAQLPGRKGGQASPNNSD*GSAISG
Trigger: ACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGG...GCTGGCCTGGCCTCCTTTCCGTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGGGCCCATCACCCACTaGAAGGGCACCCTTGCGGCC +
Preference number: 5 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINGPITH*KGTLAA
Trigger: GGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp ACTCTAGGTGCCGGTTATGCAGGGCCAGGGATACAAAGTCCCCCTTaGCATCCGTCTTCTGCCCATTGTAGAGGAGTAAGCCACTGGGCC +
Preference number: 5 (lower is better)
Translates to: TLGAGYAGPGIQSPP*HPSSAHCRGVSHWA
Trigger: GGCCCAGTGGCTTACTCCTCTACAATGGGCAGAAGACGGATGGCAAGGGGGACTTTGTATCCCTGGCCCTGCATAACCGGCACCTAGAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CTCCAACCTTTCCAATCCACAGCACCAGCCCCTGCGTGGCCTCAGTaGGTAAGCTCAGCTCAAAGTGGTTGCTCTGCAGCGCTTTCTCAC +
Preference number: 5 (lower is better)
Translates to: LQPFQSTAPAPAWPQ*VSSAQSGCSAALSH
Trigger: GTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTGGATTGGAAAGGTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AGGTGTGTGTTGGGCGGGGCAGTTCTCAGGCCGCAGAAGCATTTCTaGGTGCCGTGTACGTGGGTTCACCCGGCAAATATGATTCAGGTC +
Preference number: 5 (lower is better)
Translates to: RCVLGGAVLRPQKHF*VPCTWVHPANMIQV
Trigger: GACCTGAATCATATTTGCCGGGTGAACCCACGTACACGGCACCCAGAAATGCTTCTGCGGCCTGAGAACTGCCCCGCCCAACACACACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AGCACCAGCCCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTCTCACTCTCAGTCACAGCATTGAGG +
Preference number: 5 (lower is better)
Translates to: STSPCVASVRKLSSK*LLCSAFSLSVTALR
Trigger: CCTCAATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGGGCAGACATTCTTCTaGCACACACAGGAGGCCCGG +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKGQTFF*HTQEAR
Trigger: CCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCCC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCGACACTCGGCCTGTaGGCGCCAACAGTCATTGTC +
Preference number: 5 (lower is better)
Translates to: DGKEARPAVLLANVQSRKSTLGL*APTVIV
Trigger: GACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGA...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAAAGATGGCCCAGGGCTaGACCATCTGGACACTGCCC +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSKMAQG*TIWTLP
Trigger: GGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACTCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTG +
Preference number: 5 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHSSPLP*VLPDSL
Trigger: CAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGA...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACACGCCCTGGAATGCCTaGGTAGCTGGACAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDTPWNA*VAGQLE
Trigger: CTCCAACTGTCCAGCTACCAAGGCATTCCAGGGCGT...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACGGATACCTGGATCTGTaGGAGCAAGGCCTGACCCAC +
Preference number: 5 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDGYLDL*EQGLTH
Trigger: GTGGGTCAGGCCTTGCTCCAACAGATCCAGGTATCC...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGGATACCTGGATCTGTaGGAGCAAGGCCTGACCCAC +
Preference number: 5 (lower is better)
Translates to: DGKEARPAVLLANVQSRKGYLDL*EQGLTH
Trigger: GTGGGTCAGGCCTTGCTCCAACAGATCCAGGTATCC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCCCCACACCAGAGCTTaGAACCACAGCCCTCTGCCA +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKPHTRA*NHSPLP
Trigger: TGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACCCATTAAGGCAGGGGTaGTCCACGGCCTGGGTACAA +
Preference number: 5 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDPLRQG*STAWVQ
Trigger: TTGTACCCAGGCCGTGGACAACCCCTGCCTTAATGG...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTCCATCTGTGTCCAATaGTGTGGCACCCAGCGGGGA +
Preference number: 5 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDSICVQ*CGTQRG
Trigger: TCCCCGCTGGGTGCCACACAATTGGACACAGATGGA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 90 bp AAGGACACTCTGGCAACTAAAGTCACAGACACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACCACCATGCTGCCGACACAGCTCCTG +
Preference number: 5 (lower is better)
Translates to: KDTLATKVTDTRPVF*VLIPDTTMLPTQLL
Trigger: CAGGAGCTGTGTCGGCAGCATGGTGGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGTGTCTGTGACTTTAGTTGCCAGAGTGTCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CTGGCATTGACCAGAGCGCACTTTCTGGAGAAGCAGGCCACGGGCTaGACCTATACGGCTCATGACACAGTCGTTTTCATAGGTGACCCC +
Preference number: 5 (lower is better)
Translates to: LALTRAHFLEKQATG*TYTAHDTVVFIGDP
Trigger: GGGGTCACCTATGAAAACGACTGTGTCATGAGCCGTATAGGTGCAGCCCGTGGCCTGCTTCTCCAGAAAGTGCGCTCTGGTCAATGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AGCCAAGATGGCCCAGGGCTTGACCATCTGGACACTGCCCACACTTaGGACCAGCCACACCAGGTCTACAGGAACACAATCCAGTCATCT +
Preference number: 5 (lower is better)
Translates to: SQDGPGLDHLDTAHT*DQPHQVYRNTIQSS
Trigger: AGATGACTGGATTGTGTTCCTGTAGACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGTCTTCACTGTGCATGTaGCCCCAAATGCACACTGCG +
Preference number: 5 (lower is better)
Translates to: ADLGVPQHHFLSLQHSCPSSLCM*PQMHTA
Trigger: CGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGA...CGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAG +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKSCSHA*SSPDPE
Trigger: CTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGA...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAG +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSSCSHA*SSPDPE
Trigger: CTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATGGACACTGCCCACACTaGGGACCAGCCACACCAGGT +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYGHCPH*GPATPG
Trigger: ACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCC...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATCCAGTGAGGGTGTCTaGCCATCTGAGCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVSSEGV*PSEQQP
Trigger: GGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGACGCCCTGGAATGCCTaGGTAGCTGGACAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKTPWNA*VAGQLE
Trigger: CTCCAACTGTCCAGCTACCAAGGCATTCCAGGGCGT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTAGCTTCGTGTCCAAGTaGAGGCCATCAGTGCCACTC +
Preference number: 5 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPSFVSK*RPSVPL
Trigger: GAGTGGCACTGATGGCCTCAACTTGGACACGAAGCT...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAAGATACAAAGTCCCCCTaGCCATCCGTCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: DGKEARPAVLLANVQSRKDTKSP*PSVFCP
Trigger: TGGGCAGAAGACGGATGGCAAGGGGGACTTTGTATC...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAGGGCCCATCACCCACTaGAAGGGCACCCTTGCGGCC +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKGPITH*KGTLAA
Trigger: GGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCC...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCACCATTAAGGCAGGGGTaGTCCACGGCCTGGGTACAA +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSPLRQG*STAWVQ
Trigger: TTGTACCCAGGCCGTGGACAACCCCTGCCTTAATGG...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGAGATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACTCCATCTGTGTCCAATaGTGTGGCACCCAGCGGGGA +
Preference number: 5 (lower is better)
Translates to: RDGCSWLLRQVSNGGQPHSICVQ*CGTQRG
Trigger: TCCCCGCTGGGTGCCACACAATTGGACACAGATGGA...GTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGATCCAGCAGGCTCTCTaGGGCCACCACATCTTTGCC +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKIQQAL*GHHIFA
Trigger: GGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGAT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 90 bp GCACTAAGCTTGTTAGCACCGCCGGCCCTGAGCCCGTGTCGAACCTaGACTGTACATGACCATCCAACAGAGCCAGAGCCAGGAAATCTT +
Preference number: 5 (lower is better)
Translates to: ALSLLAPPALSPCRT*TVHDHPTEPEPGNL
Trigger: AAGATTTCCTGGCTCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTTCGACACGGGCTCAGGGCCGGCGGTGCTAACAAGCTTAGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp TTGGGACCAGCCACACCAGGTCTACAGGAACACAATCCAGTCATCTaGTCACAGTCATCTCTTACAGCACCCCGAGGGTCACAGCTGCAG +
Preference number: 5 (lower is better)
Translates to: LGPATPGLQEHNPVI*SQSSLTAPRGSQLQ
Trigger: CTGCAGCTGTGACCCTCGGGGTGCTGTAAGAGATGACTGTGAGCAGATGACTGGATTGTGTTCCTGTAGACCTGGTGTGGCTGGTCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp GACCATCCAACAGAGCCAGAGCCAGGAAATCTTTGCCACGTGCATTaGCATTGTAGAGCAGCAGTCCCTCTGTCTCCAGCGCCCGGAATT +
Preference number: 5 (lower is better)
Translates to: DHPTEPEPGNLCHVH*HCRAAVPLSPAPGI
Trigger: AATTCCGGGCGCTGGAGACAGAGGGACTGCTGCTCTACAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCTGGCTCTGTTGGATGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp TACATGACCATCCAACAGAGCCAGAGCCAGGAAATCTTTGCCACGTaGATTGCCATTGTAGAGCAGCAGTCCCTCTGTCTCCAGCGCCCG +
Preference number: 5 (lower is better)
Translates to: YMTIQQSQSQEIFAT*IAIVEQQSLCLQRP
Trigger: CGGGCGCTGGAGACAGAGGGACTGCTGCTCTACAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCTGGCTCTGTTGGATGGTCATGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp CCTTGTTGCCACCATCCAGCAGGCTCTCTTGGGCCACCACATCTTTaGCTTTCAAGTACCGCCACACTCGAACCTTGCAGGAGTAGGTGT +
Preference number: 5 (lower is better)
Translates to: PCCHHPAGSLGPPHL*LSSTATLEPCRSRC
Trigger: ACACCTACTCCTGCAAGGTTCGAGTGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 90 bp CCACAGGTCTGGCAGTGTCCGGCTGAGGCCACGTATAGGCTGATCTaGTGTGTACAGGCGTGGACATGCAGCTCACATTCACTAGCATAT +
Preference number: 5 (lower is better)
Translates to: PQVWQCPAEATYRLI*CVQAWTCSSHSLAY
Trigger: ATATGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTCAGCCGGACACTGCCAGACCTGTGG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp TTGGTAGAGTTAGCCTCTGGACATGTGAGAGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCTACGCAGGAGGCGCCAAACTCACAG +
Preference number: 5 (lower is better)
Translates to: LVELASGHVRVGQTH*AKPASSTQEAPNSQ
Trigger: CTGTGAGTTTGGCGCCTCCTGCGTAGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCAGAGGCTAACTCTACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp GGTGCTGGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTaGTTGTCGCAGATGAGGGGGTCTCCAAAGCCACCAATTACCACC +
Preference number: 5 (lower is better)
Translates to: GAGFTKKILVSPVDT*LSQMRGSPKPPITT
Trigger: GGTGGTAATTGGTGGCTTTGGAGACCCCCTCATCTGCGACAACCAGGTGTCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGAC +
Preference number: 5 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINKLQVT*AQGSRD
Trigger: GTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGGTCTCGAGTCTGGCATaGACCAGAGCGCACTTTCTG +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKVSSLA*TRAHFL
Trigger: CAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGAC...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTCTTCACTGTGCATGTaGCCCCAAATGCACACTGCG +
Preference number: 5 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDSSLCM*PQMHTA
Trigger: CGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAG +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVSCSHA*SSPDPE
Trigger: CTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAAGATGGCCCAGGGCTaGACCATCTGGACACTGCCC +
Preference number: 5 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINKMAQG*TIWTLP
Trigger: GGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTT...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GCTACGGCCGACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCCACAAGTCACTGGTGTaGTGGGATCTGCTTCACAGC +
Preference number: 5 (lower is better)
Translates to: ATADLGVPQHHFLSLQHSHKSLV*WDLLHS
Trigger: GCTGTGAAGCAGATCCCACAACACCAGTGACTTGTG...GCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTCGGCCGTAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTG +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYSSPLP*VLPDSL
Trigger: CAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GATGGATGCAGCTGGCTACTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTTTGGTAGCTGGACAGTaGGAGCCTTCTGAGTCCAGT +
Preference number: 5 (lower is better)
Translates to: DGCSWLLRQVSNGGQPHPLVAGQ*EPSESS
Trigger: ACTGGACTCAGAAGGCTCCAACTGTCCAGCTACCAA...AGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAGTAGCCAGCTGCATCCATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACTTAGGAGTCCCTCAGCACCACTTTTTGTCTCTGCAGCACAGCTGCCCGGACTTGGTAGCTGGACAGTaGGAGCCTTCTGAGTCCAGT +
Preference number: 5 (lower is better)
Translates to: DLGVPQHHFLSLQHSCPDLVAGQ*EPSESS
Trigger: ACTGGACTCAGAAGGCTCCAACTGTCCAGCTACCAA...GTCCGGGCAGCTGTGCTGCAGAGACAAAAAGTGGTGCTGAGGGACTCCTAAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCTGTACCTGTCCTTGGCTGGACCCTGGGCAGTAACTGTCACTCAGATGAGGACCCAAACAACTCTGACTaGGGGTCAGCCATCTCTGGT +
Preference number: 5 (lower is better)
Translates to: PVPVLGWTLGSNCHSDEDPNNSD*GSAISG
Trigger: ACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGG...GTCCTCATCTGAGTGACAGTTACTGCCCAGGGTCCAGCCAAGGACAGGTACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS TCA 90 bp GTCCAGCGTGCTCTCAATGCTCCTTGCAGTCTCCCCAAACAACTCTaGCTTGGGGTCAGCCATCTCTGGTGTGTAGAACAGTTCCTGTCC +
Preference number: 5 (lower is better)
Translates to: VQRALNAPCSLPKQL*LGVSHLWCVEQFLS
Trigger: GGACAGGAACTGTTCTACACACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACTGCAAGGAGCATTGAGAGCACGCTGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp TGGGCAAAACCAGCCTCCTCTACGCAGGAGGCGCCAAACTCACAGTaGATTTCCACACAAGTCACTGGTGTTGTGGGATCTGCTTCACAG +
Preference number: 5 (lower is better)
Translates to: WAKPASSTQEAPNSQ*ISTQVTGVVGSASQ
Trigger: CTGTGAAGCAGATCCCACAACACCAGTGACTTGTGTGGAAATGCACTGTGAGTTTGGCGCCTCCTGCGTAGAGGAGGCTGGTTTTGCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp GTTGAGCATCAACTCATTCTTGTGGGCTGGCCACAGGTAGGGTGGTaGTGGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTG +
Preference number: 5 (lower is better)
Translates to: VEHQLILVGWPQVGW*WVHKEDSSVPGGHL
Trigger: CAGGTGTCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATGCTCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 90 bp TGTCCGGCTGAGGCCACGTATAGGCTGATCTGGTGTGTACAGGCGTaGACATGCAGCTCACATTCACTAGCATATGTGTGTCCGTCAGAG +
Preference number: 5 (lower is better)
Translates to: CPAEATYRLIWCVQA*TCSSHSLAYVCPSE
Trigger: CTCTGACGGACACACATATGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTCAGCCGGACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp GCTGGGAGCCTAGGTCATAGCTCAGTTGTAGGTGCCCATCCACAATaGCCAGAGCCATGTAGTCTGCACGTTCTCCAACCTTTCCAATCC +
Preference number: 5 (lower is better)
Translates to: AGSLGHSSVVGAHPQ*PEPCSLHVLQPFQS
Trigger: GGATTGGAAAGGTTGGAGAACGTGCAGACTACATGGCTCTGGCCATTGTGGATGGGCACCTACAACTGAGCTATGACCTAGGCTCCCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 90 bp AAGCCACCAATTACCACCTTGTTGCCACCATCCAGCAGGCTCTCTTaGGCCACCACATCTTTGCCTTTCAAGTACCGCCACACTCGAACC +
Preference number: 5 (lower is better)
Translates to: KPPITTLLPPSSRLS*ATTSLPFKYRHTRT
Trigger: GGTTCGAGTGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTGGTGGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 90 bp GAGCATCAACTCATTCTTGTGGGCTGGCCACAGGTAGGGTGGTGCTaGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTGGTT +
Preference number: 5 (lower is better)
Translates to: EHQLILVGWPQVGWC*VHKEDSSVPGGHLV
Trigger: AACCAGGTGTCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 90 bp GGAGTTGAGCATCAACTCATTCTTGTGGGCTGGCCACAGGTAGGGTaGTGCTGGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGACAC +
Preference number: 5 (lower is better)
Translates to: GVEHQLILVGWPQVG*CWVHKEDSSVPGGH
Trigger: GTGTCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATGCTCAACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAGTCTCGAGTCTGGCATaGACCAGAGCGCACTTTCTG +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVVSSLA*TRAHFL
Trigger: CAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGAC...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCACAAGTCACTGGTGTaGTGGGATCTGCTTCACAGC +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKHKSLV*WDLLHS
Trigger: GCTGTGAAGCAGATCCCACAACACCAGTGACTTGTG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CTCAGGCAGGTAAGCAATGGAGGTCAGCCACACCCTATCGTGATGCACTCCCCATCTGATCCACAGACCTaGGTAGAGTTAGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: LRQVSNGGQPHPIVMHSPSDPQT*VELASG
Trigger: TCCAGAGGCTAACTCTACCAAGGTCTGTGGATCAGA...TGGGGAGTGCATCACGATAGGGTGTGGCTGACCTCCATTGCTTACCTGCCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATTGGTAGCTGGACAGTaGGAGCCTTCTGAGTCCAGT +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSLVAGQ*EPSESS
Trigger: ACTGGACTCAGAAGGCTCCAACTGTCCAGCTACCAA...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGCGCCCCGAGCCAGCTaGCTGAAGTCAGGAGCTCCC +
Preference number: 5 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQAPRAS*LKSGAP
Trigger: GGGAGCTCCTGACTTCAGCAAGCTGGCTCGGGGCGC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCACTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSLSSKW*LCSAFS
Trigger: TGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAG...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATGGGCCACCACATCTTaGCCTTTCAAGTACCGCCAC +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVWATTS*PFKYRH
Trigger: GTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 90 bp AAAGCAGGTTGTAGGACACAGACACGAGGCGGTCTGTCCATCGGCTaGAGGTACACAGGTACTACCGAAACTGCAGGTCACATTGGCACA +
Preference number: 5 (lower is better)
Translates to: KAGCRTQTRGGLSIG*RYTGTTETAGHIGT
Trigger: TGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGACAGACCGCCTCGTGTCTGTGTCCTACAACCTGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 90 bp GCTGAGGCCACGTATAGGCTGATCTGGTGTGTACAGGCGTGGACATaGAGCTCACATTCACTAGCATATGTGTGTCCGTCAGAGCCACAT +
Preference number: 5 (lower is better)
Translates to: AEATYRLIWCVQAWT*SSHSLAYVCPSEPH
Trigger: ATGTGGCTCTGACGGACACACATATGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTCAGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATGTCTCGAGTCTGGCATaGACCAGAGCGCACTTTCTG +
Preference number: 5 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINVSSLA*TRAHFL
Trigger: CAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGAC...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATCTTCACTGTGCATGTaGCCCCAAATGCACACTGCG +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVSSLCM*PQMHTA
Trigger: CGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACGGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATTCAGCTGGCATTCATaGCCGTATGTGACACCATCT +
Preference number: 5 (lower is better)
Translates to: DGKEARPAVLLANVQSRKFSWHS*PYVTPS
Trigger: AGATGGTGTCACATACGGCAATGAATGCCAGCTGAA...TTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAATCCAGTGAGGGTGTCTaGCCATCTGAGCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKSSEGV*PSEQQP
Trigger: GGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGA...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGAAAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCAAGAGCCAGGAAATCTTaGCCACGTGCATTGCCATTG +
Preference number: 5 (lower is better)
Translates to: GKEARPAVLLANVQSRKSRARKS*PRALPL
Trigger: CAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCT...TGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAACCCCACACCAGAGCTTaGAACCACAGCCCTCTGCCA +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKPHTRA*NHSPLP
Trigger: TGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGG...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTTTCATCTGCACAAGTaGGGCCAAAGCGGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYFHLHK*GQSGQV
Trigger: CACCTGGCCGCTTTGGCCCAACTTGTGCAGATGAAA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCCAATTACCACCTTGTaGCCACCATCCAGCAGGCTC +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYPITTL*PPSSRL
Trigger: GAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTGG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATCCACCAATTACCACCTaGTTGCCACCATCCAGCAGG +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYPPITT*LPPSSR
Trigger: CCTGCTGGATGGTGGCAACAAGGTGGTAATTGGTGG...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGAGGATCAAGCAGATGTaGCAGGGGATCATGAAGTAC +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRIKQM*QGIMKY
Trigger: GTACTTCATGATCCCCTGCAACATCTGCTTGATCCT...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAATCGACACTCGGCCTGTaGGCGCCAACAGTCATTGTC +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKSTLGL*APTVIV
Trigger: GACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGA...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGCAGCCATAGGGGGTTaGGGCACAGTGTGGGGAGGC +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQAAIGG*GTVWGG
Trigger: GCCTCCCCACACTGTGCCCAAACCCCCTATGGCTGC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCAACAGCCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATCACAAGTCACTGGTGTaGTGGGATCTGCTTCACAGC +
Preference number: 5 (lower is better)
Translates to: PQQPLLLRDTVLTQLHINHKSLV*WDLLHS
Trigger: GCTGTGAAGCAGATCCCACAACACCAGTGACTTGTG...ATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGGCTGTTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATCTGATCCACAGACCTaGGTAGAGTTAGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVSDPQT*VELASG
Trigger: TCCAGAGGCTAACTCTACCAAGGTCTGTGGATCAGA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACTCCAGTGAGGGTGTCTaGCCATCTGAGCAGCAGCCC +
Preference number: 5 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYSSEGV*PSEQQP
Trigger: GGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGA...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTAAGAGCCAGGAAATCTTaGCCACGTGCATTGCCATTG +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVRARKS*PRALPL
Trigger: CAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCT...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGCCAGCGGTTGGTGTaGACCTTCACAGTGGAGCGC +
Preference number: 5 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQSQRLV*TFTVER
Trigger: GCGCTCCACTGTGAAGGTCAACACCAACCGCTGGCT...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACTGCACCGGGTCCACGTaGAGGATCTCCTCCACTGTG +
Preference number: 5 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYCTGST*RISSTV
Trigger: CACAGTGGAGGAGATCCTCAACGTGGACCCGGTGCA...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GTAGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGCGCATAAGGCTGGAGTaGAGCATCAACTCATTCTTG +
Preference number: 5 (lower is better)
Translates to: VAWLLLPASGDRQTHFGKRIRLE*SINSFL
Trigger: CAAGAATGAGTTGATGCTCAACTCCAGCCTTATGCG...CTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 90 bp CAAAGTGGTTGCTCTGCAGCGCTTTCTCACTCTCAGTCACAGCATTaGGGTACTCGATGTAGGTCCGCCCATCAAAGGCCAGTGTTTCTA +
Preference number: 5 (lower is better)
Translates to: QSGCSAALSHSQSQH*GTRCRSAHQRPVFL
Trigger: TAGAAACACTGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS CCA 90 bp GATCCGCATAAGGCTGGAGTTGAGCATCAACTCATTCTTGTGGGCTaGCCACAGGTAGGGTGGTGCTGGGTTCACAAAGAAGATTCTAGT +
Preference number: 5 (lower is better)
Translates to: DPHKAGVEHQLILVG*PQVGWCWVHKEDSS
Trigger: ACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATGCTCAACTCCAGCCTTATGCGGATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGGGCAGACATTCTTCTaGCACACACAGGAGGCCCGG +
Preference number: 5 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQGQTFF*HTQEAR
Trigger: CCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGCCC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGATAGGTGTGTGTaGGGCGGGGCAGTTCTCAGG +
Preference number: 5 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQTDRCV*GGAVLR
Trigger: CCTGAGAACTGCCCCGCCCAACACACACCTATCTGT...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAATCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAG +
Preference number: 5 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQSCSHA*SSPDPE
Trigger: CTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGA...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGGACACTGCCCACACTaGGGACCAGCCACACCAGGT +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQGHCPH*GPATPG
Trigger: ACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGCCTGGCTTCTACTTCCAGCCTCCGGGGACAGGCAAACACATTTTGGGAAGTATTCAGCTGGCATTCATaGCCGTATGTGACACCATCT +
Preference number: 5 (lower is better)
Translates to: SLASTSSLRGQANTFWEVFSWHS*PYVTPS
Trigger: AGATGGTGTCACATACGGCAATGAATGCCAGCTGAA...TACTTCCCAAAATGTGTTTGCCTGTCCCCGGAGGCTGGAAGTAGAAGCCAGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAGGATACCTGGATCTGTaGGAGCAAGGCCTGACCCAC +
Preference number: 5 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQGYLDL*EQGLTH
Trigger: GTGGGTCAGGCCTTGCTCCAACAGATCCAGGTATCC...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGCGCCCCGAGCCAGCTaGCTGAAGTCAGGAGCTCCC +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNAPRAS*LKSGAP
Trigger: GGGAGCTCCTGACTTCAGCAAGCTGGCTCGGGGCGC...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAACAGATAGGTGTGTGTaGGGCGGGGCAGTTCTCAGG +
Preference number: 5 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQTDRCV*GGAVLR
Trigger: CCTGAGAACTGCCCCGCCCAACACACACCTATCTGT...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACGTCTCGAGTCTGGCATaGACCAGAGCGCACTTTCTG +
Preference number: 5 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYVSSLA*TRAHFL
Trigger: CAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGAC...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AAGGAGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATTTCAGCTGGCATTCATaGCCGTATGTGACACCATCT +
Preference number: 5 (lower is better)
Translates to: KEARPAVLLANVQSRKSYFSWHS*PYVTPS
Trigger: AGATGGTGTCACATACGGCAATGAATGCCAGCTGAA...ATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCTCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAACGCCCTGGAATGCCTaGGTAGCTGGACAGTTGGAG +
Preference number: 5 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKTPWNA*VAGQLE
Trigger: CTCCAACTGTCCAGCTACCAAGGCATTCCAGGGCGT...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAACCATTAAGGCAGGGGTaGTCCACGGCCTGGGTACAA +
Preference number: 5 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKPLRQG*STAWVQ
Trigger: TTGTACCCAGGCCGTGGACAACCCCTGCCTTAATGG...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACAGCCAGCGGTTGGTGTaGACCTTCACAGTGGAGCGC +
Preference number: 5 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNSQRLV*TFTVER
Trigger: GCGCTCCACTGTGAAGGTCAACACCAACCGCTGGCT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGAGCCAGCGGTTGGTGTaGACCTTCACAGTGGAGCGC +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQSQRLV*TFTVER
Trigger: GCGCTCCACTGTGAAGGTCAACACCAACCGCTGGCT...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAAAGGTCTTAGCTCTGGTTaGGTGACAGCGTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: PSCSGTQFSPNYTLITHKGLSSG*VTASSS
Trigger: GCTGGAGGACGCTGTCACCAAACCAGAGCTAAGACC...TTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACACAGATAGGTGTGTGTaGGGCGGGGCAGTTCTCAGG +
Preference number: 5 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNTDRCV*GGAVLR
Trigger: CCTGAGAACTGCCCCGCCCAACACACACCTATCTGT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTACAGATAGGTGTGTGTaGGGCGGGGCAGTTCTCAGG +
Preference number: 5 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCTDRCV*GGAVLR
Trigger: CCTGAGAACTGCCCCGCCCAACACACACCTATCTGT...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACCACAAGTCACTGGTGTaGTGGGATCTGCTTCACAGC +
Preference number: 5 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYHKSLV*WDLLHS
Trigger: GCTGTGAAGCAGATCCCACAACACCAGTGACTTGTG...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATAACACACAAACAGTGCCTAGCAATGGGCCAGGAGACCCAAAGGATCAATACTTGGTAGCTGGACAGTaGGAGCCTTCTGAGTCCAGT +
Preference number: 5 (lower is better)
Translates to: NNTQTVPSNGPGDPKDQYLVAGQ*EPSESS
Trigger: ACTGGACTCAGAAGGCTCCAACTGTCCAGCTACCAA...GTATTGATCCTTTGGGTCTCCTGGCCCATTGCTAGGCACTGTTTGTGTGTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCCCTCCTGCTCAGGGACACAGTTCTCACCCAATTACACATTAATAACACACAACCAAACAACTCTGACTaGGGGTCAGCCATCTCTGGT +
Preference number: 5 (lower is better)
Translates to: PLLLRDTVLTQLHINNTQPNNSD*GSAISG
Trigger: ACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGG...TTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTCCCTGAGCAGGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGGATACCTGGATCTGTaGGAGCAAGGCCTGACCCAC +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQGYLDL*EQGLTH
Trigger: GTGGGTCAGGCCTTGCTCCAACAGATCCAGGTATCC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAAGAGCCAGGAAATCTTaGCCACGTGCATTGCCATTG +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKRARKS*PRALPL
Trigger: CAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCT...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAATGCAAGATACAAAGTCCCCCTaGCCATCCGTCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: GQQSFWPTCSQENHIKMQDTKSP*PSVFCP
Trigger: TGGGCAGAAGACGGATGGCAAGGGGGACTTTGTATC...TTGCATTTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACTCCATCTGTGTCCAATaGTGTGGCACCCAGCGGGGA +
Preference number: 5 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNSICVQ*CGTQRG
Trigger: TCCCCGCTGGGTGCCACACAATTGGACACAGATGGA...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp TACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGGTCTTAGCTCTGGTTaGGTGACAGCGTCCTCCAGC +
Preference number: 5 (lower is better)
Translates to: YNGPTEGCPHLRPIKSCCGLSSG*VTASSS
Trigger: GCTGGAGGACGCTGTCACCAAACCAGAGCTAAGACC...ACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCCGGTGGACACCTGGTaGTCGCAGATGAGGGGGTCT +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNPVDTW*SQMRGS
Trigger: AGACCCCCTCATCTGCGACAACCAGGTGTCCACCGG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGAC +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNKLQVT*AQGSRD
Trigger: GTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAAGATGGCCCAGGGCTaGACCATCTGGACACTGCCC +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNKMAQG*TIWTLP
Trigger: GGGCAGTGTCCAGATGGTCAAGCCCTGGGCCATCTT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGAGCTTCGTGTCCAAGTaGAGGCCATCAGTGCCACTC +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQSFVSK*RPSVPL
Trigger: GAGTGGCACTGATGGCCTCAACTTGGACACGAAGCT...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGTTTCATCTGCACAAGTaGGGCCAAAGCGGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQFHLHK*GQSGQV
Trigger: CACCTGGCCGCTTTGGCCCAACTTGTGCAGATGAAA...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp TTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATGGGCCAGGATACAAAGTCCCCCTaGCCATCCGTCTTCTGCCCA +
Preference number: 5 (lower is better)
Translates to: FSPNYTLITHKQCLAMGQDTKSP*PSVFCP
Trigger: TGGGCAGAAGACGGATGGCAAGGGGGACTTTGTATC...CTGGCCCATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AGGCCAGGCCAGCAGTCCTTCTGGCCAACGTGCAGTCAAGAAAATCATATAAAAAAGTGGATCCCAGGTTaGTCTTCTACACAGAACTCC +
Preference number: 5 (lower is better)
Translates to: RPGQQSFWPTCSQENHIKKWIPG*SSTQNS
Trigger: GGAGTTCTGTGTAGAAGACAAACCTGGGATCCACTT...TTTTATATGATTTTCTTGACTGCACGTTGGCCAGAAGGACTGCTGGCCTGGCCT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATTCGACACTCGGCCTGTaGGCGCCAACAGTCATTGTC +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNSTLGL*APTVIV
Trigger: GACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGA...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATCTGCAGCTGAAACCCTaGCCAGAATCCAGGTCCTGG +
Preference number: 5 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDLQLKP*PESRSW
Trigger: CCAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAG...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp ACGATCATCATTACAATGGACCAACTGAGGGATGCCCTCATCTTAGACCAATTACTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: TIIITMDQLRDALILDQLLSSKW*LCSAFS
Trigger: TGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAG...TAATTGGTCTAAGATGAGGGCATCCCTCAGTTGGTCCATTGTAATGATGATCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATAGCTTCGTGTCCAAGTaGAGGCCATCAGTGCCACTC +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNSFVSK*RPSVPL
Trigger: GAGTGGCACTGATGGCCTCAACTTGGACACGAAGCT...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp CCAACTGAGGGATGCCCTCATCTTAGACCAATTAAAAGTTGCTGTGAGTTAAACAGGATCAAGCAGATGTaGCAGGGGATCATGAAGTAC +
Preference number: 5 (lower is better)
Translates to: PTEGCPHLRPIKSCCELNRIKQM*QGIMKY
Trigger: GTACTTCATGATCCCCTGCAACATCTGCTTGATCCT...GTTTAACTCACAGCAACTTTTAATTGGTCTAAGATGAGGGCATCCCTCAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCCAAACAACTCTGACTaGGGGTCAGCCATCTCTGGT +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNPNNSD*GSAISG
Trigger: ACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp GACACAGTTCTCACCCAATTACACATTAATAACACACAAACAGTGCCTAGCAATCTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCA +
Preference number: 5 (lower is better)
Translates to: DTVLTQLHINNTQTVPSNLSSKW*LCSAFS
Trigger: TGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAG...ATTGCTAGGCACTGTTTGTGTGTTATTAATGTGTAATTGGGTGAGAACTGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS-3UTR CAA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATTCTGATCCACAGACCTaGGTAGAGTTAGCCTCTGGA +
Preference number: 5 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDSDPQT*VELASG
Trigger: TCCAGAGGCTAACTCTACCAAGGTCTGTGGATCAGA...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS-3UTR CAA 90 bp AATGGAGAAGCAGATGGATGCTTCAGTTTCAGTCATTTTTGGCTCTATAGTGATAGGATCAAGCAGATGTaGCAGGGGATCATGAAGTAC +
Preference number: 5 (lower is better)
Translates to: NGEADGCFSFSHFWLYSDRIKQM*QGIMKY
Trigger: GTACTTCATGATCCCCTGCAACATCTGCTTGATCCT...ATCACTATAGAGCCAAAAATGACTGAAACTGAAGCATCCATCTGCTTCTCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS TCA 72 bp CCTGGGCACACACTGGCCTGTAAGCCCCATCACAGGTaGCGCGATCGCAGGAACAGTGGGGACGGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: PGHTLACKPHHR*RDRRNSGDGRG
Trigger: GCCGCGGCCGTCCCCACTGTTCCTGCGATCGCGTCACCTGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GGCGGTGCCACCGTCCCGGTTCCACTGGCACTAAGCTaGTTAGCACCGCCGGCCCTGAGCCCGTGTCGAACC +
Preference number: 6 (lower is better)
Translates to: GGATVPVPLALS*LAPPALSPCRT
Trigger: GGTTCGACACGGGCTCAGGGCCGGCGGTGCTAACAAGCTTAGTGCCAGTGGAACCGGGACGGTGGCACCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CTCACACGCATTGTCTTCCCCAGACCCAGAGCCCCCTaGGCCACACTCAGCCGGCTCACACGGCCCTGCACG +
Preference number: 6 (lower is better)
Translates to: LTRIVFPRPRAP*ATLSRLTRPCT
Trigger: CGTGCAGGGCCGTGTGAGCCGGCTGAGTGTGGCTCAGGGGGCTCTGGGTCTGGGGAAGACAATGCGTGTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCCTCGCCATCCACAGAAAGTGTGCCCTGCCGCCAATaGCGTGACAACTCGAGGCGGTGCCACCGTCCCGGT +
Preference number: 6 (lower is better)
Translates to: ASPSTESVPCRQ*RDNSRRCHRPG
Trigger: ACCGGGACGGTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGCGAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp ACATTGGCACAGGGGTCCCGGGACCCACATGGCCCTTaGCGGAGTAGGCGGATGCGCCGTTGCTGGTTGCAC +
Preference number: 6 (lower is better)
Translates to: TLAQGSRDPHGP*RSRRMRRCWLH
Trigger: GTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp AGCAGTGGAGCCAAGGTAGGGCCCCGGCAGGCTCCCTaGGCAGCGACGTACAGCTCTTGCCGCGCTTCACAT +
Preference number: 6 (lower is better)
Translates to: SSGAKVGPRQAP*AATYSSCRASH
Trigger: ATGTGAAGCGCGGCAAGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGGCCCTACCTTGGCTCCACTGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp GCCATCCACAGAAAGTGTGCCCTGCCGCCAATGCCGTaGCAACTCGAGGCGGTGCCACCGTCCCGGTTCCAC +
Preference number: 6 (lower is better)
Translates to: AIHRKCALPPMP*QLEAVPPSRFH
Trigger: GTGGAACCGGGACGGTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp TGCCGCTATAGGAGCCGTGTGGGTTGCAATGGCAGGTaGTGGGACAGCCAGCCAAGCCCACACCCTGGGCAG +
Preference number: 6 (lower is better)
Translates to: CRYRSRVGCNGR*WDSQPSPHPGQ
Trigger: CTGCCCAGGGTGTGGGCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACCCACACGGCTCCTATAGCGGCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CACCAGCTGGATGGCACCATCAAAGCCGGAGGCCACTaGAGCGCCCCGAGCCAGCTTGCTGAAGTCAGGAGC +
Preference number: 6 (lower is better)
Translates to: HQLDGTIKAGGH*SAPSQLAEVRS
Trigger: GCTCCTGACTTCAGCAAGCTGGCTCGGGGCGCTGCAGTGGCCTCCGGCTTTGATGGTGCCATCCAGCTGGTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp AGCCGGCTCACACGGCCCTGCACGGGCCTCCTCAATTaGTACCTGCTGCTGACAGGCAGCCTCTCGGAGCTC +
Preference number: 6 (lower is better)
Translates to: SRLTRPCTGLLN*YLLLTGSLSEL
Trigger: GAGCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCGGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 90 bp GCCACACTCAGCCGGCTCACACGGCCCTGCACGGGCCTCCTCAATTaGTACCTGCTGCTGACAGGCAGCCTCTCGGAGCTCACAGGCACT +
Preference number: 6 (lower is better)
Translates to: ATLSRLTRPCTGLLN*YLLLTGSLSELTGT
Trigger: AGTGCCTGTGAGCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAATTGAGGAGGCCCGTGCAGGGCCGTGTGAGCCGGCTGAGTGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 90 bp TCCCAGACACCACCATGCTGCCGACACAGCTCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAGCCCCCTGAGCCACACTCAGCCGGC +
Preference number: 6 (lower is better)
Translates to: SQTPPCCRHSSCSHA*SSPDPEPPEPHSAG
Trigger: GCCGGCTGAGTGTGGCTCAGGGGGCTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGAGCTGTGTCGGCAGCATGGTGGTGTCTGGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp GGCCCTGCACGGGCCTCCTCAATTTGTACCTGCTGCTaGCAGGCAGCCTCTCGGAGCTCACAGGCACTGAGG +
Preference number: 6 (lower is better)
Translates to: GPARASSICTCC*QAASRSSQALR
Trigger: CCTCAGTGCCTGTGAGCTCCGAGAGGCTGCCTGTCAGCAGCAGGTACAAATTGAGGAGGCCCGTGCAGGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CCACATGGCCCTTGGCGGAGTAGGCGGATGCGCCGTTaGTGGTTGCACTGTGCACGCTGTAGCTCACACTCG +
Preference number: 6 (lower is better)
Translates to: PHGPWRSRRMRR*WLHCARCSSHS
Trigger: CGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATGTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GAGAGTGGGGCAGGGTCAAAGTCCAAGAATCGCACATaGTCCCGCAGAGGCCTCCTCACTGCCAGGGCCCAC +
Preference number: 6 (lower is better)
Translates to: ESGAGSKSKNRT*SRRGLLTARAH
Trigger: GTGGGCCCTGGCAGTGAGGAGGCCTCTGCGGGAGCATGTGCGATTCTTGGACTTTGACCCTGCCCCACTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071248.12
CDS GCA 72 bp AGGCAAGGCTGGGAATCACAGGACTTTGGGGGCCGTTaGGGGCCTGGAGTCCGAGGTCGGTCAATACTGGCG +
Preference number: 6 (lower is better)
Translates to: RQGWESQDFGGR*GPGVRGRSILA
Trigger: CGCCAGTATTGACCGACCTCGGACTCCAGGCCCGCAACGGCCCCCAAAGTCCTGTGATTCCCAGCCTTGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CAGCATTCTCCAGGACTGTCTCACAGAAGGAACCACTaGGTCCCAGGGGGCACGCACACTTGGCCCCACCCC +
Preference number: 6 (lower is better)
Translates to: QHSPGLSHRRNH*VPGGTHTWPHP
Trigger: GGGGTGGGGCCAAGTGTGCGTGCCCCCTGGGACGCAGTGGTTCCTTCTGTGAGACAGTCCTGGAGAATGCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GGACGGCCGCGGCGGGACAGGCATACAGAGTTAAACTaGCAGGTCTCCGGGCACTGGTCTCGAGTCTGGCAT +
Preference number: 6 (lower is better)
Translates to: GRPRRDRHTELN*QVSGHWSRVWH
Trigger: ATGCCAGACTCGAGACCAGTGCCCGGAGACCTGCCAGTTTAACTCTGTATGCCTGTCCCGCCGCGGCCGTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp CCACCATGCTGCCGACACAGCTCCTGCTCACACGCATaGTCTTCCCCAGACCCAGAGCCCCCTGAGCCACAC +
Preference number: 6 (lower is better)
Translates to: PPCCRHSSCSHA*SSPDPEPPEPH
Trigger: GTGTGGCTCAGGGGGCTCTGGGTCTGGGGAAGACAATGCGTGTGAGCAGGAGCTGTGTCGGCAGCATGGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GCCCCGGCAGGCTCCCTGAGCAGCGACGTACAGCTCTaGCCGCGCTTCACATCTGGCCTTCTTCAGATGGCA +
Preference number: 6 (lower is better)
Translates to: APAGSLSSDVQL*PRFTSGLLQMA
Trigger: TGCCATCTGAAGAAGGCCAGATGTGAAGCGCGGCAAGAGCTGTACGTCGCTGCTCAGGGAGCCTGCCGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp TGGCAGGTCTCCGGGCACTGGTCTCGAGTCTGGCATTaGCCAGAGCGCACTTTCTGGAGAAGCAGGCCACGG +
Preference number: 6 (lower is better)
Translates to: WQVSGHWSRVWH*PERTFWRSRPR
Trigger: CCGTGGCCTGCTTCTCCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGACCAGTGCCCGGAGACCTGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CAGGCCGGCTGGTGTAACTGGGGTAGACTCGTGGGGTaGCAGAAGAGGCAGACAGTCGGCTCACAGTGGTGG +
Preference number: 6 (lower is better)
Translates to: QAGWCNWGRLVG*QKRQTVGSQWW
Trigger: CCACCACTGTGAGCCGACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGTTACACCAGCCGGCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CTGGGTCACAAGTGCCGCTATAGGAGCCGTGTGGGTTaGAATGGCAGGTGCTGGGACAGCCAGCCAAGCCCA +
Preference number: 6 (lower is better)
Translates to: LGHKCRYRSRVG*NGRCWDSQPSP
Trigger: TGGGCTTGGCTGGCTGTCCCAGCACCTGCCATTGCAACCCACACGGCTCCTATAGCGGCACTTGTGACCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CCACATCAGAGGGTGTGGCTGCAGTGCTCCTGGGGGTaGCGACTACGGTCTGAGGTGATGTGGGTAATGGGG +
Preference number: 6 (lower is better)
Translates to: PHQRVWLQCSWG*RLRSEVMWVMG
Trigger: CCCCATTACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp ACAACAGGAGCCTCGCCATCCACAGAAAGTGTGCCCTaGCGCCAATGCCGTGACAACTCGAGGCGGTGCCAC +
Preference number: 6 (lower is better)
Translates to: TTGASPSTESVP*RQCRDNSRRCH
Trigger: GTGGCACCGCCTCGAGTTGTCACGGCATTGGCGGCAGGGCACACTTTCTGTGGATGGCGAGGCTCCTGTTGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CACCCAGCGGGGAAGAGCCAGTCACAGGGGCTTCATTaGCCACCTGAAGGGAACCTTCCCTGTGCTCCCTGT +
Preference number: 6 (lower is better)
Translates to: HPAGKSQSQGLH*PPEGNLPCAPC
Trigger: ACAGGGAGCACAGGGAAGGTTCCCTTCAGGTGGGCAATGAAGCCCCTGTGACTGGCTCTTCCCCGCTGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CATGGCCCTTGGCGGAGTAGGCGGATGCGCCGTTGCTaGTTGCACTGTGCACGCTGTAGCTCACACTCGTTG +
Preference number: 6 (lower is better)
Translates to: HGPWRSRRMRRC*LHCARCSSHSL
Trigger: CAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCCATG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GACTGGCCACATCAGAGGGTGTGGCTGCAGTGCTCCTaGGGGTGCCGACTACGGTCTGAGGTGATGTGGGTA +
Preference number: 6 (lower is better)
Translates to: DWPHQRVWLQCS*GCRLRSEVMWV
Trigger: TACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGGCCAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TCAGCAGCTGATGGCCTCTTAGAGACACCAGCTGGATaGCACCATCAAAGCCGGAGGCCACTGCAGCGCCCC +
Preference number: 6 (lower is better)
Translates to: SAADGLLETPAG*HHQSRRPLQRP
Trigger: GGGGCGCTGCAGTGGCCTCCGGCTTTGATGGTGCCATCCAGCTGGTGTCTCTAAGAGGCCATCAGCTGCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GGCCCTTGGCGGAGTAGGCGGATGCGCCGTTGCTGGTaGCACTGTGCACGCTGTAGCTCACACTCGTTGCTA +
Preference number: 6 (lower is better)
Translates to: GPWRSRRMRRCW*HCARCSSHSLL
Trigger: TAGCAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp CTGGCAGGTCTCCGGGCACTGGTCTCGAGTCTGGCATaGACCAGAGCGCACTTTCTGGAGAAGCAGGCCACG +
Preference number: 6 (lower is better)
Translates to: LAGLRALVSSLA*TRAHFLEKQAT
Trigger: CGTGGCCTGCTTCTCCAGAAAGTGCGCTCTGGTCAATGCCAGACTCGAGACCAGTGCCCGGAGACCTGCCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp CCAGCCCTGCCTGCAGTACAGCTGCAGCTGAAACCCTaGCCAGAATCCAGGTCCTGGCAGGTACCTCCGTGG +
Preference number: 6 (lower is better)
Translates to: PALPAVQLQLKP*PESRSWQVPPW
Trigger: CCACGGAGGTACCTGCCAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAGCTGTACTGCAGGCAGGGCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 90 bp CCATCGGCTGAAGGTACACAGGTACTACCGAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGACCCACATGGCCCTTGGCGGAGTAGG +
Preference number: 6 (lower is better)
Translates to: PSAEGTQVLPKLQVT*AQGSRDPHGPWRSR
Trigger: CCTACTCCGCCAAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 90 bp CCACTGGCCTCCTCATCGCCACTGAGCTCCTCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTGAAGATCGCTGTAGCAAGACTGGCC +
Preference number: 6 (lower is better)
Translates to: PLASSSPLSSSSPLP*VLPDSLKIAVARLA
Trigger: GGCCAGTCTTGCTACAGCGATCTTCAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGAGGAGCTCAGTGGCGATGAGGAGGCCAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CAGGGATGGTCTCCGCATTCCCCCACACCAGAGCTTTaGACCACAGCCCTCTGCCAATCGCTCAGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: QGWSPHSPTPEL*TTALCQSLSSS
Trigger: GCTGGAGCTGAGCGATTGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGGGAATGCGGAGACCATCCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp ATCATGAAGTACCGAACCAGCACGGAGGCACCAGGCTaGTGCCTGGGTCTGTGTTCCAGTGGCAGAGGAGGC +
Preference number: 6 (lower is better)
Translates to: IMKYRTSTEAPG*CLGLCSSGRGG
Trigger: GCCTCCTCTGCCACTGGAACACAGACCCAGGCAGCAGCCTGGTGCCTCCGTGCTGGTTCGGTACTTCATGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS GCA 72 bp GCCCTTGGCGGAGTAGGCGGATGCGCCGTTGCTGGTTaGACTGTGCACGCTGTAGCTCACACTCGTTGCTAT +
Preference number: 6 (lower is better)
Translates to: ALGGVGGCAVAG*TVHAVAHTRCY
Trigger: ATAGCAACGAGTGTGAGCTACAGCGTGCACAGTGCAACCAGCAACGGCGCATCCGCCTACTCCGCCAAGGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TCCTACACCTGGTCGGCAGGAGCACTGCCCTGTGACTaGGTCACAAGTGCCGCTATAGGAGCCGTGTGGGTT +
Preference number: 6 (lower is better)
Translates to: SYTWSAGALPCD*VTSAAIGAVWV
Trigger: AACCCACACGGCTCCTATAGCGGCACTTGTGACCCAGTCACAGGGCAGTGCTCCTGCCGACCAGGTGTAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GCCAACAGGCCGGCTGGTGTAACTGGGGTAGACTCGTaGGGTGACAGAAGAGGCAGACAGTCGGCTCACAGT +
Preference number: 6 (lower is better)
Translates to: ANRPAGVTGVDS*GDRRGRQSAHS
Trigger: ACTGTGAGCCGACTGTCTGCCTCTTCTGTCACCCCACGAGTCTACCCCAGTTACACCAGCCGGCCTGTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GCAGGGATGGTCTCCGCATTCCCCCACACCAGAGCTTaGAACCACAGCCCTCTGCCAATCGCTCAGCTCCAG +
Preference number: 6 (lower is better)
Translates to: AGMVSAFPHTRA*NHSPLPIAQLQ
Trigger: CTGGAGCTGAGCGATTGGCAGAGGGCTGTGGTTCAAAGCTCTGGTGTGGGGGAATGCGGAGACCATCCCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp TCCCTCGGGATACAGGAGCCCCCATTAAGGCAGGGGTaGTCCACGGCCTGGGTACAAGGGTGGCCTGCAAAA +
Preference number: 6 (lower is better)
Translates to: SLGIQEPPLRQG*STAWVQGWPAK
Trigger: TTTTGCAGGCCACCCTTGTACCCAGGCCGTGGACAACCCCTGCCTTAATGGGGGCTCCTGTATCCCGAGGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp AGGCCATGGATTCCAGCTCGCACACACTGCCGTAAGTaGCACCATCACTGCCGCACACAGGATCGTAGCCGC +
Preference number: 6 (lower is better)
Translates to: RPWIPARTHCRK*HHHCRTQDRSR
Trigger: GCGGCTACGATCCTGTGTGCGGCAGTGATGGTGTCACTTACGGCAGTGTGTGCGAGCTGGAATCCATGGCCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp AGGTCTGGCAGTGTCCGGCTGAGGCCACGTATAGGCTaGTCTGGTGTGTACAGGCGTGGACATGCAGCTCAC +
Preference number: 6 (lower is better)
Translates to: RSGSVRLRPRIG*SGVYRRGHAAH
Trigger: GTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTCAGCCGGACACTGCCAGACCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CCAGGAGCAACACTCTCCCGGCATGGACCAAGACTCTaGATGGAGATGTCCAGACGCTGGCGGCAGGCAATG +
Preference number: 6 (lower is better)
Translates to: PGATLSRHGPRL*MEMSRRWRQAM
Trigger: CATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTTGCTCCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp GGAGATTCCCCTAGCACACGGGGCCCATCACCCACTTaGAGGGCACCCTTGCGGCCATTTCGTTCCAGGAAT +
Preference number: 6 (lower is better)
Translates to: GDSPSTRGPSPT*RAPLRPFRSRN
Trigger: ATTCCTGGAACGAAATGGCCGCAAGGGTGCCCTTCAAGTGGGTGATGGGCCCCGTGTGCTAGGGGAATCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GTCCATCGGCTGAAGGTACACAGGTACTACCGAAACTaGAGGTCACATTGGCACAGGGGTCCCGGGACCCAC +
Preference number: 6 (lower is better)
Translates to: VHRLKVHRYYRN*RSHWHRGPGTH
Trigger: GTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp TTCCAATCCACAGCACCAGCCCCTGCGTGGCCTCAGTaGGTAAGCTCAGCTCAAAGTGGTTGCTCTGCAGCG +
Preference number: 6 (lower is better)
Translates to: FQSTAPAPAWPQ*VSSAQSGCSAA
Trigger: CGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGTGCTGTGGATTGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp AAGGTACACAGGTACTACCGAAACTGCAGGTCACATTaGCACAGGGGTCCCGGGACCCACATGGCCCTTGGC +
Preference number: 6 (lower is better)
Translates to: KVHRYYRNCRSH*HRGPGTHMALG
Trigger: GCCAAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TTGGGCGGGGCAGTTCTCAGGCCGCAGAAGCATTTCTaGGTGCCGTGTACGTGGGTTCACCCGGCAAATATG +
Preference number: 6 (lower is better)
Translates to: LGGAVLRPQKHF*VPCTWVHPANM
Trigger: CATATTTGCCGGGTGAACCCACGTACACGGCACCCAGAAATGCTTCTGCGGCCTGAGAACTGCCCCGCCCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TGTGACTGGGTCACAAGTGCCGCTATAGGAGCCGTGTaGGTTGCAATGGCAGGTGCTGGGACAGCCAGCCAA +
Preference number: 6 (lower is better)
Translates to: CDWVTSAAIGAV*VAMAGAGTASQ
Trigger: TTGGCTGGCTGTCCCAGCACCTGCCATTGCAACCCACACGGCTCCTATAGCGGCACTTGTGACCCAGTCACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GGCCCAGGGCTTGACCATCTGGACACTGCCCACACTTaGGACCAGCCACACCAGGTCTACAGGAACACAATC +
Preference number: 6 (lower is better)
Translates to: GPGLDHLDTAHT*DQPHQVYRNTI
Trigger: GATTGTGTTCCTGTAGACCTGGTGTGGCTGGTCCCAAGTGTGGGCAGTGTCCAGATGGTCAAGCCCTGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TGGGCAGTAGTGCTGGGAGACAGAGGAAGGCTGCTGTaGGGAGACGCCAGTGTCCTGCTCAGGATATGCCTT +
Preference number: 6 (lower is better)
Translates to: WAVVLGDRGRLL*GDASVLLRICL
Trigger: AAGGCATATCCTGAGCAGGACACTGGCGTCTCCCCACAGCAGCCTTCCTCTGTCTCCCAGCACTACTGCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CAGCTGCAGCTGAAACCCTTGCCAGAATCCAGGTCCTaGCAGGTACCTCCGTGGAGGCAAGGCTGGGAATCA +
Preference number: 6 (lower is better)
Translates to: QLQLKPLPESRS*QVPPWRQGWES
Trigger: TGATTCCCAGCCTTGCCTCCACGGAGGTACCTGCCAGGACCTGGATTCTGGCAAGGGTTTCAGCTGCAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GAAGGTACACAGGTACTACCGAAACTGCAGGTCACATaGGCACAGGGGTCCCGGGACCCACATGGCCCTTGG +
Preference number: 6 (lower is better)
Translates to: EGTQVLPKLQVT*AQGSRDPHGPW
Trigger: CCAAGGGCCATGTGGGTCCCGGGACCCCTGTGCCAATGTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp TCGACCCCCTCAAGCTCCAGCACGCCCTGGAATGCCTaGGTAGCTGGACAGTTGGAGCCTTCTGAGTCCAGT +
Preference number: 6 (lower is better)
Translates to: STPSSSSTPWNA*VAGQLEPSESS
Trigger: ACTGGACTCAGAAGGCTCCAACTGTCCAGCTACCAAGGCATTCCAGGGCGTGCTGGAGCTTGAGGGGGTCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 90 bp ACCAGCCCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCACTGAAAAGGGCCCGGGAATCCAGA +
Preference number: 6 (lower is better)
Translates to: TSPCVASVRKLSSKW*LCSAFSLKRARESR
Trigger: TCTGGATTCCCGGGCCCTTTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS TCA 72 bp TTGTTAGCACCGCCGGCCCTGAGCCCGTGTCGAACCTaGACTGTACATGACCATCCAACAGAGCCAGAGCCA +
Preference number: 6 (lower is better)
Translates to: LLAPPALSPCRT*TVHDHPTEPEP
Trigger: TGGCTCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTTCGACACGGGCTCAGGGCCGGCGGTGCTAACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCTGGCACTCGCACACAGCTTTCCCATTCTTCACTGTaGATGTTGCCCCAAATGCACACTGCGCTCCACGGC +
Preference number: 6 (lower is better)
Translates to: AGTRTQLSHSSL*MLPQMHTALHG
Trigger: GCCGTGGAGCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGAATGGGAAAGCTGTGTGCGAGTGCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CCGTCTTCTGAGTCCTCATCCCAGACACCACCATGCTaGCGACACAGCTCCTGCTCACACGCATTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: PSSESSSQTPPC*RHSSCSHALSS
Trigger: GGAAGACAATGCGTGTGAGCAGGAGCTGTGTCGGCAGCATGGTGGTGTCTGGGATGAGGACTCAGAAGACGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp AAAGTGGGAAACCAGTCAAAGTCCAAGAATCGCACATaGTCCCGCAGAGGCCTCCTCACTGCCAGGGCCCAC +
Preference number: 6 (lower is better)
Translates to: KVGNQSKSKNRT*SRRGLLTARAH
Trigger: GTGGGCCCTGGCAGTGAGGAGGCCTCTGCGGGAGCATGTGCGATTCTTGGACTTTGACTGGTTTCCCACTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GTCATTGTCATACGTGTGCCCATCCTGGGCACACACTaGCCTGTAAGCCCCATCACAGGTGACGCGATCGCA +
Preference number: 6 (lower is better)
Translates to: VIVIRVPILGTH*PVSPITGDAIA
Trigger: TGCGATCGCGTCACCTGTGATGGGGCTTACAGGCCAGTGTGTGCCCAGGATGGGCACACGTATGACAATGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GGGGGAATGGTCTGCTGTTGTCGACACTCGGCCTGTTaGCGCCAACAGTCATTGTCATACGTGTGCCCATCC +
Preference number: 6 (lower is better)
Translates to: GGMVCCCRHSAC*RQQSLSYVCPS
Trigger: GGATGGGCACACGTATGACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGACAACAGCAGACCATTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TTAGCCTCTGGACATGTGAGAGTTGGGCAGACACACTaGGCAAAACCAGCCTCCTCTACGCAGGAGGCGCCA +
Preference number: 6 (lower is better)
Translates to: LASGHVRVGQTH*AKPASSTQEAP
Trigger: TGGCGCCTCCTGCGTAGAGGAGGCTGGTTTTGCCCAGTGTGTCTGCCCAACTCTCACATGTCCAGAGGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GAGCAACACTCTCCCGGCATGGACCAAGACTCTGAATaGAGATGTCCAGACGCTGGCGGCAGGCAATGGTCT +
Preference number: 6 (lower is better)
Translates to: EQHSPGMDQDSE*RCPDAGGRQWS
Trigger: AGACCATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGGAGAGTGTTGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GTGGGGAGACGCCAGTGTCCTGCTCAGGATATGCCTTaGGGTGGTCATAGATGCAGATGTAGGGGAAACCCC +
Preference number: 6 (lower is better)
Translates to: VGRRQCPAQDMP*GGHRCRCRGNP
Trigger: GGGGTTTCCCCTACATCTGCATCTATGACCACCCCAAGGCATATCCTGAGCAGGACACTGGCGTCTCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp ACTGAAAAGGGCCCGGGAATCCAGAGTTTCGGGGGCTaGGATCTCATTGGTCAGCTCGCTCTCAGTCACAGC +
Preference number: 6 (lower is better)
Translates to: TEKGPGIQSFGG*DLIGQLALSHS
Trigger: GCTGTGACTGAGAGCGAGCTGACCAATGAGATCCCAGCCCCCGAAACTCTGGATTCCCGGGCCCTTTTCAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS CCA 72 bp CCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTCTCACTGAAAAGGGCC +
Preference number: 6 (lower is better)
Translates to: PCVASVRKLSSK*LLCSAFSLKRA
Trigger: GGCCCTTTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS CAA 72 bp TGTTGTCGACACTCGGCCTGTTGGCGCCAACAGTCATaGTCATACGTGTGCCCATCCTGGGCACACACTGGC +
Preference number: 6 (lower is better)
Translates to: CCRHSACWRQQS*SYVCPSWAHTG
Trigger: GCCAGTGTGTGCCCAGGATGGGCACACGTATGACAATGACTGTTGGCGCCAACAGGCCGAGTGTCGACAACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp ACTCGCACACAGCTTTCCCATTCTTCACTGTGCATGTaGCCCCAAATGCACACTGCGCTCCACGGCACGGGG +
Preference number: 6 (lower is better)
Translates to: TRTQLSHSSLCM*PQMHTALHGTG
Trigger: CCCCGTGCCGTGGAGCGCAGTGTGCATTTGGGGCAACATGCACAGTGAAGAATGGGAAAGCTGTGTGCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp TCCTCATCGCCACTGAGCTCCTCATCGCCACTGCCGTaGGTGCTGCCAGATTCCCTGAAGATCGCTGTAGCA +
Preference number: 6 (lower is better)
Translates to: SSSPLSSSSPLP*VLPDSLKIAVA
Trigger: TGCTACAGCGATCTTCAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGAGGAGCTCAGTGGCGATGAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GGTTCGGTTGGCAGGGGTTCTTTTCATCTGCACAAGTaGGGCCAAAGCGGCCAGGTGGGCACTGACAGAGGA +
Preference number: 6 (lower is better)
Translates to: GSVGRGSFHLHK*GQSGQVGTDRG
Trigger: TCCTCTGTCAGTGCCCACCTGGCCGCTTTGGCCCAACTTGTGCAGATGAAAAGAACCCCTGCCAACCGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GCCCGGGAATCCAGAGTTTCGGGGGCTGGGATCTCATaGGTCAGCTCGCTCTCAGTCACAGCATTGAGGTAC +
Preference number: 6 (lower is better)
Translates to: ARESRVSGAGIS*VSSLSVTALRY
Trigger: GTACCTCAATGCTGTGACTGAGAGCGAGCTGACCAATGAGATCCCAGCCCCCGAAACTCTGGATTCCCGGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS CAA 72 bp TGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCACTGAAAAGGGCCCGG +
Preference number: 6 (lower is better)
Translates to: CVASVRKLSSKW*LCSAFSLKRAR
Trigger: CCGGGCCCTTTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS CAA 90 bp ACCAGCCCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCACTCTCAGTCACAGCATTGAGGTAC +
Preference number: 6 (lower is better)
Translates to: TSPCVASVRKLSSKW*LCSAFSLSVTALRY
Trigger: GTACCTCAATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGGGCTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS TCA 72 bp CTGGCAACTAAAGTCACAGACACACGGCCCGTCTTCTaGGTCCTCATCCCAGACACCACCATGCTGCCGACA +
Preference number: 6 (lower is better)
Translates to: LATKVTDTRPVF*VLIPDTTMLPT
Trigger: TGTCGGCAGCATGGTGGTGTCTGGGATGAGGACTCAGAAGACGGGCCGTGTGTCTGTGACTTTAGTTGCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CACAGCTGCAGGGAGTGCAACCACTATGTCCATCGGTaGCAATGCCACGGAAGTTCCAGAAGCCAGGCTCAC +
Preference number: 6 (lower is better)
Translates to: HSCRECNHYVHR*QCHGSSRSQAH
Trigger: GTGAGCCTGGCTTCTGGAACTTCCGTGGCATTGTCACCGATGGACATAGTGGTTGCACTCCCTGCAGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp GCCGGCCCTGAGCCCGTGTCGAACCTGAACTGTACATaGCCATCCAACAGAGCCAGAGCCAGGAAATCTTTG +
Preference number: 6 (lower is better)
Translates to: AGPEPVSNLNCT*PSNRARARKSL
Trigger: CAAAGATTTCCTGGCTCTGGCTCTGTTGGATGGTCATGTACAGTTCAGGTTCGACACGGGCTCAGGGCCGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCCGGTTATGCAGGGCCAGGGATACAAAGTCCCCCTTaGCATCCGTCTTCTGCCCATTGTAGAGGAGTAAGC +
Preference number: 6 (lower is better)
Translates to: AGYAGPGIQSPP*HPSSAHCRGVS
Trigger: GCTTACTCCTCTACAATGGGCAGAAGACGGATGGCAAGGGGGACTTTGTATCCCTGGCCCTGCATAACCGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GGTACAAGGGTGGCCTGCAAAAGGCGCTACATCTACTaGCCGCAACACATGCTCCTGAGTCAGCAGCTGATG +
Preference number: 6 (lower is better)
Translates to: GTRVACKRRYIY*PQHMLLSQQLM
Trigger: CATCAGCTGCTGACTCAGGAGCATGTGTTGCGGGCAGTAGATGTAGCGCCTTTTGCAGGCCACCCTTGTACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTTGCTCTaGAGCGCTTTCTCACTGAAAAGGGCCCGGGAATCC +
Preference number: 6 (lower is better)
Translates to: ASVRKLSSKWLL*SAFSLKRARES
Trigger: GGATTCCCGGGCCCTTTTCAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS GCA 72 bp CACCATCCAGCAGGCTCTCTTGGGCCACCACATCTTTaGCTTTCAAGTACCGCCACACTCGAACCTTGCAGG +
Preference number: 6 (lower is better)
Translates to: HHPAGSLGPPHL*LSSTATLEPCR
Trigger: CCTGCAAGGTTCGAGTGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 72 bp TGGCAGTGTCCGGCTGAGGCCACGTATAGGCTGATCTaGTGTGTACAGGCGTGGACATGCAGCTCACATTCA +
Preference number: 6 (lower is better)
Translates to: WQCPAEATYRLI*CVQAWTCSSHS
Trigger: TGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTCAGCCGGACACTGCCA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CCCTGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTaGTTGCTCTGCAGCGCTTTCTCACTCTCAGTCACA +
Preference number: 6 (lower is better)
Translates to: PCVASVRKLSSK*LLCSAFSLSVT
Trigger: TGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS CAA 72 bp TCCGGAACAGGTCGTCCAGCGTGCTCTCAATGCTCCTaGCAGTCTCCCCAAACAACTCTGACTTGGGGTCAG +
Preference number: 6 (lower is better)
Translates to: SGTGRPACSQCS*QSPQTTLTWGQ
Trigger: CTGACCCCAAGTCAGAGTTGTTTGGGGAGACTGCAAGGAGCATTGAGAGCACGCTGGACGACCTGTTCCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp CCACCATCCAGCAGGCTCTCTTGGGCCACCACATCTTaGCCTTTCAAGTACCGCCACACTCGAACCTTGCAG +
Preference number: 6 (lower is better)
Translates to: PPSSRLSWATTS*PFKYRHTRTLQ
Trigger: CTGCAAGGTTCGAGTGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 90 bp ACCGCAAAGCCCAACGTAGAAGTAGCCAAGAGGATCAAGCAGATGTaGCAGGGGATCATGAAGTACCGAACCAGCACGGAGGCACCAGGC +
Preference number: 6 (lower is better)
Translates to: TAKPNVEVAKRIKQM*QGIMKYRTSTEAPG
Trigger: GCCTGGTGCCTCCGTGCTGGTTCGGTACTTCATGATCCCCTGCAACATCTGCTTGATCCTCTTGGCTACTTCTACGTTGGGCTTTGCGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS CAA 90 bp TTGTCGCAGATGAGGGGGTCTCCAAAGCCACCAATTACCACCTTGTaGCCACCATCCAGCAGGCTCTCTTGGGCCACCACATCTTTGCCT +
Preference number: 6 (lower is better)
Translates to: LSQMRGSPKPPITTL*PPSSRLSWATTSLP
Trigger: AGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTGGTGGCTTTGGAGACCCCCTCATCTGCGACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 90 bp TGGTTGTCGCAGATGAGGGGGTCTCCAAAGCCACCAATTACCACCTaGTTGCCACCATCCAGCAGGCTCTCTTGGGCCACCACATCTTTG +
Preference number: 6 (lower is better)
Translates to: WLSQMRGSPKPPITT*LPPSSRLSWATTSL
Trigger: CAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTGGTGGCTTTGGAGACCCCCTCATCTGCGACAACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 72 bp TGTAGGACACAGACACGAGGCGGTCTGTCCATCGGCTaGAGGTACACAGGTACTACCGAAACTGCAGGTCAC +
Preference number: 6 (lower is better)
Translates to: CRTQTRGGLSIG*RYTGTTETAGH
Trigger: GTGACCTGCAGTTTCGGTAGTACCTGTGTACCTTCAGCCGATGGACAGACCGCCTCGTGTCTGTGTCCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp CCAGCCTCCTCTACGCAGGAGGCGCCAAACTCACAGTaGATTTCCACACAAGTCACTGGTGTTGTGGGATCT +
Preference number: 6 (lower is better)
Translates to: PASSTQEAPNSQ*ISTQVTGVVGS
Trigger: AGATCCCACAACACCAGTGACTTGTGTGGAAATGCACTGTGAGTTTGGCGCCTCCTGCGTAGAGGAGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp ACAGAGCCAGAGCCAGGAAATCTTTGCCACGTGCATTaGCATTGTAGAGCAGCAGTCCCTCTGTCTCCAGCG +
Preference number: 6 (lower is better)
Translates to: TEPEPGNLCHVH*HCRAAVPLSPA
Trigger: CGCTGGAGACAGAGGGACTGCTGCTCTACAATGGCAATGCACGTGGCAAAGATTTCCTGGCTCTGGCTCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTTaGTCTGCAGCGCTTTCTCACTCTCAGTCACAGCAT +
Preference number: 6 (lower is better)
Translates to: AWPQCVSSAQSG*SAALSHSQSQH
Trigger: ATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS CCA 72 bp GGAAGGCTGTGGTGGGGTCAAAGTGAACATCCACAATaGCACGGACTAATTTGCCAGGCCCCAGTTCCCGTA +
Preference number: 6 (lower is better)
Translates to: GRLWWGQSEHPQ*HGLICQAPVPV
Trigger: TACGGGAACTGGGGCCTGGCAAATTAGTCCGTGCCATTGTGGATGTTCACTTTGACCCCACCACAGCCTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CTCATTCTTGTGGGCTGGCCACAGGTAGGGTGGTGCTaGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGA +
Preference number: 6 (lower is better)
Translates to: LILVGWPQVGWC*VHKEDSSVPGG
Trigger: TCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 72 bp ATAGGTGACCCCATCATCTCCACAGATAGGTGTGTGTaGGGCGGGGCAGTTCTCAGGCCGCAGAAGCATTTC +
Preference number: 6 (lower is better)
Translates to: IGDPIISTDRCV*GGAVLRPQKHF
Trigger: GAAATGCTTCTGCGGCCTGAGAACTGCCCCGCCCAACACACACCTATCTGTGGAGATGATGGGGTCACCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp CGCTGGCGGCAGGCAATGGTCTTCAGCTGGCATTCATaGCCGTATGTGACACCATCTGATCCACAGACCTTG +
Preference number: 6 (lower is better)
Translates to: RWRQAMVFSWHS*PYVTPSDPQTL
Trigger: CAAGGTCTGTGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGCG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp GCCCTCTGCCAATCGCTCAGCTCCAGCTGCTGGTTGTaGATGTCCAACATACGAATGCATCCTTTCAGGCCG +
Preference number: 6 (lower is better)
Translates to: ALCQSLSSSCWL*MSNIRMHPFRP
Trigger: CGGCCTGAAAGGATGCATTCGTATGTTGGACATCAACAACCAGCAGCTGGAGCTGAGCGATTGGCAGAGGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp TGCGTGGCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTaGCTCTGCAGCGCTTTCTCACTCTCAGTCACAGCA +
Preference number: 6 (lower is better)
Translates to: CVASVRKLSSKW*LCSAFSLSVTA
Trigger: TGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGCCACGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS CAA 90 bp GCTGGGTTCACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTGGTaGTCGCAGATGAGGGGGTCTCCAAAGCCACCAATTACCACCTTG +
Preference number: 6 (lower is better)
Translates to: AGFTKKILVSPVDTW*SQMRGSPKPPITTL
Trigger: CAAGGTGGTAATTGGTGGCTTTGGAGACCCCCTCATCTGCGACAACCAGGTGTCCACCGGGGACACTAGAATCTTCTTTGTGAACCCAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 72 bp CCCTCTGCCAATCGCTCAGCTCCAGCTGCTGGTTGTTaGTGTCCAACATACGAATGCATCCTTTCAGGCCGA +
Preference number: 6 (lower is better)
Translates to: PSANRSAPAAGC*CPTYECILSGR
Trigger: TCGGCCTGAAAGGATGCATTCGTATGTTGGACATCAACAACCAGCAGCTGGAGCTGAGCGATTGGCAGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp GGATCTCATTGGTCAGCTCGCTCTCAGTCACAGCATTaGGGTACTCGATGTAGGTCCGCCCATCAAAGGCCA +
Preference number: 6 (lower is better)
Translates to: GSHWSARSQSQH*GTRCRSAHQRP
Trigger: TGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAGCGAGCTGACCAATGAGATCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105575.9
CDS TCA 72 bp TGCTCTGCAGCGCTTTCTCACTCTCAGTCACAGCATTaGGGTACTCGATGTAGGTCCGCCCATCAAAGGCCA +
Preference number: 6 (lower is better)
Translates to: CSAALSHSQSQH*GTRCRSAHQRP
Trigger: TGGCCTTTGATGGGCGGACCTACATCGAGTACCTCAATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS GCA 72 bp CATTCCCCTGCACACATCAGGAGGCATAGAAGGCGCTaGTGTGAAGTGGATCCCAGGTTTGTAGTTGCTGAG +
Preference number: 6 (lower is better)
Translates to: HSPAHIRRHRRR*CEVDPRFVVAE
Trigger: CTCAGCAACTACAAACCTGGGATCCACTTCACAGCAGCGCCTTCTATGCCTCCTGATGTGTGCAGGGGAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS GCA 72 bp ACCAGAGCGCACTTTCTGGAGAAGCAGGCCACGGGCTaGACCTATACGGCTCATGACACAGTCGTTTTCATA +
Preference number: 6 (lower is better)
Translates to: TRAHFLEKQATG*TYTAHDTVVFI
Trigger: TATGAAAACGACTGTGTCATGAGCCGTATAGGTGCAGCCCGTGGCCTGCTTCTCCAGAAAGTGCGCTCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCCACACCAGGTCTACAGGAACACAATCCAGTCATCTaGTCACAGTCATCTCTTACAGCACCCCGAGGGTCA +
Preference number: 6 (lower is better)
Translates to: ATPGLQEHNPVI*SQSSLTAPRGS
Trigger: TGACCCTCGGGGTGCTGTAAGAGATGACTGTGAGCAGATGACTGGATTGTGTTCCTGTAGACCTGGTGTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GACAGTTGGAGCCTTCTGAGTCCAGTGAGGGTGTCTTaGCATCTGAGCAGCAGCCCAAAGGTGAGTTGTAAC +
Preference number: 6 (lower is better)
Translates to: DSWSLLSPVRVS*HLSSSPKVSCN
Trigger: GTTACAACTCACCTTTGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGACTCAGAAGGCTCCAACTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp GCCTCAGTGCGTAAGCTCAGCTCAAAGTGGTTGCTCTaGAGCGCTTTCTCACTCTCAGTCACAGCATTGAGG +
Preference number: 6 (lower is better)
Translates to: ASVRKLSSKWLL*SAFSLSVTALR
Trigger: CCTCAATGCTGTGACTGAGAGTGAGAAAGCGCTGCAGAGCAACCACTTTGAGCTGAGCTTACGCACTGAGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000105574.9
ENSMUST00000180572.2
CDS GCA 72 bp CAACTCATTCTTGTGGGCTGGCCACAGGTAGGGTGGTaGTGGGTTCACAAAGAAGATTCTAGTGTCCCCGGT +
Preference number: 6 (lower is better)
Translates to: QLILVGWPQVGW*WVHKEDSSVPG
Trigger: ACCGGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 72 bp GCAGACATTCTTCTTGCACACACAGGAGGCCCGGCCTaGATCCTCAACACTAGGTTCACACACAGCACCAAA +
Preference number: 6 (lower is better)
Translates to: ADILLAHTGGPA*ILNTRFTHSTK
Trigger: TTTGGTGCTGTGTGTGAACCTAGTGTTGAGGATCCAGGCCGGGCCTCCTGTGTGTGCAAGAAGAATGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp ATGTCCAGACGCTGGCGGCAGGCAATGGTCTTCAGCTaGCATTCATTGCCGTATGTGACACCATCTGATCCA +
Preference number: 6 (lower is better)
Translates to: MSRRWRQAMVFS*HSLPYVTPSDP
Trigger: TGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACAT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp TTCACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTaGTTGTCGCAGATGAGGGGGTCTCCAAAGCCACCA +
Preference number: 6 (lower is better)
Translates to: FTKKILVSPVDT*LSQMRGSPKPP
Trigger: TGGTGGCTTTGGAGACCCCCTCATCTGCGACAACCAGGTGTCCACCGGGGACACTAGAATCTTCTTTGTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 72 bp TCCAGGTTCCGCAAAGTGATCCGCATAAGGCTGGAGTaGAGCATCAACTCATTCTTGTGGGCTGGCCACAGG +
Preference number: 6 (lower is better)
Translates to: SRFRKVIRIRLE*SINSFLWAGHR
Trigger: CCTGTGGCCAGCCCACAAGAATGAGTTGATGCTCAACTCCAGCCTTATGCGGATCACTTTGCGGAACCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 90 bp AAAGCCACCAATTACCACCTTGTTGCCACCATCCAGCAGGCTCTCTaGGGCCACCACATCTTTGCCTTTCAAGTACCGCCACACTCGAAC +
Preference number: 6 (lower is better)
Translates to: KATNYHLVATIQQAL*GHHIFAFQVPPHSN
Trigger: GTTCGAGTGTGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATTGGTGGCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS TCA 72 bp CTTCAGATGGCACTCCGTGCTATAGGTGACTCCATCTaGGCCACACACTGGGCTTTTAAGGACACTCTGGCA +
Preference number: 6 (lower is better)
Translates to: LQMALRAIGDSI*ATHWAFKDTLA
Trigger: TGCCAGAGTGTCCTTAAAAGCCCAGTGTGTGGCTCAGATGGAGTCACCTATAGCACGGAGTGCCATCTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp AGAGGTCCGATCAAGCACCGTGGCAACTTGTTCTTCTaGGAGACCACCCACATAGAGCTTCGTGTCCAAGTT +
Preference number: 6 (lower is better)
Translates to: RGPIKHRGNLFF*ETTHIELRVQV
Trigger: AACTTGGACACGAAGCTCTATGTGGGTGGTCTCCCAGAAGAACAAGTTGCCACGGTGCTTGATCGGACCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CTAGGTCATAGCTCAGTTGTAGGTGCCCATCCACAATaGCCAGAGCCATGTAGTCTGCACGTTCTCCAACCT +
Preference number: 6 (lower is better)
Translates to: LGHSSVVGAHPQ*PEPCSLHVLQP
Trigger: AGGTTGGAGAACGTGCAGACTACATGGCTCTGGCCATTGTGGATGGGCACCTACAACTGAGCTATGACCTAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CATCAACTCATTCTTGTGGGCTGGCCACAGGTAGGGTaGTGCTGGGTTCACAAAGAAGATTCTAGTGTCCCC +
Preference number: 6 (lower is better)
Translates to: HQLILVGWPQVG*CWVHKEDSSVP
Trigger: GGGGACACTAGAATCTTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CCA 72 bp AAGGCTGGAGTTGAGCATCAACTCATTCTTGTGGGCTaGCCACAGGTAGGGTGGTGCTGGGTTCACAAAGAA +
Preference number: 6 (lower is better)
Translates to: KAGVEHQLILVG*PQVGWCWVHKE
Trigger: TTCTTTGTGAACCCAGCACCACCCTACCTGTGGCCAGCCCACAAGAATGAGTTGATGCTCAACTCCAGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 72 bp CCCAACGTAGAAGTAGCCAAGAGGATCAAGCAGATGTaGCAGGGGATCATGAAGTACCGAACCAGCACGGAG +
Preference number: 6 (lower is better)
Translates to: PNVEVAKRIKQM*QGIMKYRTSTE
Trigger: CTCCGTGCTGGTTCGGTACTTCATGATCCCCTGCAACATCTGCTTGATCCTCTTGGCTACTTCTACGTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
CDS CAA 72 bp CAAACTCACAGTGCATTTCCACACAAGTCACTGGTGTaGTGGGATCTGCTTCACAGCCAAGATGGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: QTHSAFPHKSLV*WDLLHSQDGPG
Trigger: CCCTGGGCCATCTTGGCTGTGAAGCAGATCCCACAACACCAGTGACTTGTGTGGAAATGCACTGTGAGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CAA 72 bp AATTACCACCTTGTTGCCACCATCCAGCAGGCTCTCTaGGGCCACCACATCTTTGCCTTTCAAGTACCGCCA +
Preference number: 6 (lower is better)
Translates to: NYHLVATIQQAL*GHHIFAFQVPP
Trigger: TGGCGGTACTTGAAAGGCAAAGATGTGGTGGCCCAAGAGAGCCTGCTGGATGGTGGCAACAAGGTGGTAATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 72 bp ACAAAGAAGATTCTAGTGTCCCCGGTGGACACCTGGTaGTCGCAGATGAGGGGGTCTCCAAAGCCACCAATT +
Preference number: 6 (lower is better)
Translates to: TKKILVSPVDTW*SQMRGSPKPPI
Trigger: AATTGGTGGCTTTGGAGACCCCCTCATCTGCGACAACCAGGTGTCCACCGGGGACACTAGAATCTTCTTTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000180572.2
CDS CAA 90 bp ATGTCCAGACGCTGGCGGCAGGCAATGGTCTTCAGCTGGCATTCATaGCCGTATGTGACACCATCTGATCCACAGACCTTGGTAGAGTTA +
Preference number: 6 (lower is better)
Translates to: MSRRWRQAMVFSWHS*PYVTPSDPQTLVEL
Trigger: TAACTCTACCAAGGTCTGTGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACAT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp GAGGCCACGTATAGGCTGATCTGGTGTGTACAGGCGTaGACATGCAGCTCACATTCACTAGCATATGTGTGT +
Preference number: 6 (lower is better)
Translates to: EATYRLIWCVQA*TCSSHSLAYVC
Trigger: ACACACATATGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGTGGCCTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS CCA 72 bp CAATGCTCCTTGCAGTCTCCCCAAACAACTCTGACTTaGGGTCAGCCATCTCTGGTGTGTAGAACAGTTCCT +
Preference number: 6 (lower is better)
Translates to: QCSLQSPQTTLT*GQPSLVCRTVP
Trigger: AGGAACTGTTCTACACACCAGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACTGCAAGGAGCATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS TCA 72 bp CTTCAGCTGGCATTCATTGCCGTATGTGACACCATCTaGTCCACAGACCTTGGTAGAGTTAGCCTCTGGACA +
Preference number: 6 (lower is better)
Translates to: LQLAFIAVCDTI*STDLGRVSLWT
Trigger: TGTCCAGAGGCTAACTCTACCAAGGTCTGTGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2
CDS GCA 72 bp ACGTATAGGCTGATCTGGTGTGTACAGGCGTGGACATaGAGCTCACATTCACTAGCATATGTGTGTCCGTCA +
Preference number: 6 (lower is better)
Translates to: TYRLIWCVQAWT*SSHSLAYVCPS
Trigger: TGACGGACACACATATGCTAGTGAATGTGAGCTGCATGTCCACGCCTGTACACACCAGATCAGCCTATACGT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000071248.12
ENSMUST00000105574.9
ENSMUST00000105575.9
ENSMUST00000180572.2