Pregenerated sensors for AGR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036231Ensembl transcript IDs: ENSMUST00000042101.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAGGTTTGAAGAAACCGTaGTCAGCAAGAGGCAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTGLKKP*SARGRG Trigger: CCCTCTGCCTCTTGCTGATCACGGTTTCTTCAAACC...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAAAGGGTCAACAAACATaGTCCTGGGCACGTACTGCC | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTKGQQT*SWARTA Trigger: GGCAGTACGTGCCCAGGATCATGTTTGTTGACCCTT...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAAAGTTTGCACCCATGTaGTGTCATCTCCCCATCCTC | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTKFAPM*CHLPIL Trigger: GAGGATGGGGAGATGACATCACATGGGTGCAAACTT...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAAGCAATGGCAAGGTTTaGAGAAACCGTGATCAGCAA | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTSNGKV*RNRDQQ Trigger: TTGCTGATCACGGTTTCTTCAAACCTTGCCATTGCT...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACACCTCTTGAGAGTGTCTaGGGAGGTCTCTTTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTPLESV*GGLFSF Trigger: AAAAGAAAAGAGACCTCCTCAGACACTCTCAAGAGG...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR TCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACACAGTTATATCAGCCCTaGCAGTCAAAGAAGGGTCAA | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTQLYQP*QSKKGQ Trigger: TTGACCCTTCTTTGACTGTCAGGGCTGATATAACTG...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR GCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAGTGGTTTGTTACTTTTaGGAGCATGAAAGAGACCTT | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTVVCYF*EHERDL Trigger: AAGGTCTCTTTCATGCTCGCAAAAGTAACAAACCAC...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR CCA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAGTGAATAACCATCAGTaGTTTGTTACTTTTGCGAGC | + |
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Preference number: 4 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTVNNHQ*FVTFAS Trigger: GCTCGCAAAAGTAACAAACCACTGATGGTTATTCAC...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS GCA 90 bp | CTGACAGTCAAAGAAGGGTCAACAAACATGATCCTGGGCACGTACTaGCCATCAGGTGACAAGTTCTTGTCCGTGGTCTCATGCATGAGA | + |
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Preference number: 5 (lower is better) Translates to: LTVKEGSTNMILGTY*PSGDKFLSVVSCMR Trigger: TCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGATCATGTTTGTTGACCCTTCTTTGACTGTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS TCA 90 bp | AGAAGGGTCAACAAACATGATCCTGGGCACGTACTGCCCATCAGGTaGCAAGTTCTTGTCCGTGGTCTCATGCATGAGATTCAGCATGAT | + |
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Preference number: 5 (lower is better) Translates to: RRVNKHDPGHVLPIR*QVLVRGLMHEIQHD Trigger: ATCATGCTGAATCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGATCATGTTTGTTGACCCTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACACATCTCCCCATCCTCTaGAGAGTGTCTGAGGAGGTC | + |
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Preference number: 5 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTHLPIL*RVSEEV Trigger: GACCTCCTCAGACACTCTCAAGAGGATGGGGAGATG...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAACCTTCTTCGTAAGTTaGCACCCATGTGATGTCATC | + |
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Preference number: 5 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTTFFVS*HPCDVI Trigger: GATGACATCACATGGGTGCAAACTTACGAAGAAGGT...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAAGTGCTTTCTTCATGTaGTCTACCAACATGGGTAAG | + |
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Preference number: 5 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTSAFFM*STNMGK Trigger: CTTACCCATGTTGGTAGACAACATGAAGAAAGCACT...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGGACTTGCACATTTGGTATTTGTTAGTGAACCAGATGTTTGTACCACAGGTCTCTTTTCTTTTTaGATAGCAATGGCAAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: IHGLAHLVFVSEPDVCTTGLFSF*IAMARF Trigger: AAACCTTGCCATTGCTATCAAAAAAGAAAAGAGACC...TGTGGTACAAACATCTGGTTCACTAACAAATACCAAATGTGCAAGTCCATGGAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS CAA 72 bp | ATCCTGGGCACGTACTGCCCATCAGGTGACAAGTTCTaGTCCGTGGTCTCATGCATGAGATTCAGCATGATG | + |
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Preference number: 6 (lower is better) Translates to: ILGTYCPSGDKF*SVVSCMRFSMM Trigger: CATCATGCTGAATCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS GCA 72 bp | AAAGAAGGGTCAACAAACATGATCCTGGGCACGTACTaGCCATCAGGTGACAAGTTCTTGTCCGTGGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: KEGSTNMILGTY*PSGDKFLSVVS Trigger: TGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGATCATGTTTGTTGACCCTTCTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS TCA 72 bp | AACAAACATGATCCTGGGCACGTACTGCCCATCAGGTaGCAAGTTCTTGTCCGTGGTCTCATGCATGAGATT | + |
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Preference number: 6 (lower is better) Translates to: NKHDPGHVLPIR*QVLVRGLMHEI Trigger: AATCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGATCATGTTTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS CAA 90 bp | ACAAACATGATCCTGGGCACGTACTGCCCATCAGGTGACAAGTTCTaGTCCGTGGTCTCATGCATGAGATTCAGCATGATGAAGTCATTT | + |
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Preference number: 6 (lower is better) Translates to: TNMILGTYCPSGDKF*SVVSCMRFSMMKSF Trigger: AAATGACTTCATCATGCTGAATCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCAGTACGTGCCCAGGATCATGTTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS GCA 72 bp | TGCCCATCAGGTGACAAGTTCTTGTCCGTGGTCTCATaGATGAGATTCAGCATGATGAAGTCATTTTGTGCC | + |
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Preference number: 6 (lower is better) Translates to: CPSGDKFLSVVS*MRFSMMKSFCA Trigger: GGCACAAAATGACTTCATCATGCTGAATCTCATGCATGAGACCACGGACAAGAACTTGTCACCTGATGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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| CDS CCA 72 bp | GCTTTCTTCATGTTGTCTACCAACATGGGTAAGTCCTaGGGTTCATACGTGTATAGTCTGTTAGAGTATCTT | + |
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Preference number: 6 (lower is better) Translates to: AFFMLSTNMGKS*GSYVYSLLEYL Trigger: AAGATACTCTAACAGACTATACACGTATGAACCCCAGGACTTACCCATGTTGGTAGACAACATGAAGAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042101.5 |
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