Pregenerated sensors for AGR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020581Ensembl transcript IDs: ENSMUST00000020898.12
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AATATATCTGTTGTAACATTAAACTGTACTGTAATCTaGAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTG | + |
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Preference number: 3 (lower is better) Translates to: NISVVTLNCTVI*KSTVLLPSGLL Trigger: CAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACAGTTTAATGTTACAACAGATATATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR TCA 90 bp | TGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCCCTCTGGAGAGTGTCTaGGGTAGTTTGGGCCGAGAG | + |
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Preference number: 4 (lower is better) Translates to: CNLQVHSASAFWSPDPVRPLESV*GSLGRE Trigger: CTCTCGGCCCAAACTACCTCAGACACTCTCCAGAGG...GCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR TCA 90 bp | GTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCAATGTCTGAGTCCAGATaGGCTGATCGCCCCAACCTC | + |
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Preference number: 4 (lower is better) Translates to: VICKSTVLLPSGLLTRCAMSESR*ADRPNL Trigger: GAGGTTGGGGCGATCAGCTCATCTGGACTCAGACAT...TGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CCA 90 bp | TGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCAGTTGGCCCAAGGTACCAGAAATaGCCACAAGAAGCAGGATTG | + |
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Preference number: 4 (lower is better) Translates to: CKSTVLLPSGLLTRCAVGPRYQK*PQEAGL Trigger: CAATCCTGCTTCTTGTGGCCATTTCTGGTACCTTGG...GCCAACTGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CCA 90 bp | GTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCAATTCTGGGGACATACTaGCCATCAGGAGAAAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: VICKSTVLLPSGLLTRCAILGTY*PSGERC Trigger: GCACCTTTCTCCTGATGGCCAGTATGTCCCCAGAAT...TGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR TCA 90 bp | GTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCATTTTGGCTCCAGATTTaGCTGTGGTGTCTTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VICKSTVLLPSGLLTRCAFWLQI*LWCLWP Trigger: TGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAA...TGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CCA 90 bp | TGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGGTGTCTGAGGTAGTTTaGGCCGAGAGTCCTTTGGGT | + |
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Preference number: 4 (lower is better) Translates to: CTVICKSTVLLPSGLLTRVSEVV*AESPLG Trigger: ACCCAAAGGACTCTCGGCCCAAACTACCTCAGACAC...CCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR TCA 90 bp | CTGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGCGTCCAAGTGATGAATaGCCATCAAGGGTCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: LYCNLQVHSASAFWSPDPRPSDE*PSRVCC Trigger: GCAACAGACCCTTGATGGTCATTCATCACTTGGACG...CGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR GCA 90 bp | TGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCAGTTGGCTTGAGGAGAACAAACTaGTCTGCCAATTTCTGGATT | + |
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Preference number: 4 (lower is better) Translates to: CKSTVLLPSGLLTRCAVGLRRTN*SANFWI Trigger: AATCCAGAAATTGGCAGAGCAGTTTGTTCTCCTCAA...GCCAACTGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR GCA 90 bp | TGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCGAGAACAAACTGCTCTaGCAATTTCTGGATTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: CNLQVHSASAFWSPDPVRENKLL*QFLDFF Trigger: AAAGAAATCCAGAAATTGGCAGAGCAGTTTGTTCTC...GCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CCA 90 bp | AGAAAATCATGCTTCACTGTAGTAGATAATAATATTGTTTCCCCACCTGTGGGTGGGCCGAGAGTCCTTTaGGTCCTTTTTGGCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RKSCFTVVDNNIVSPPVGGPRVL*VLFGSR Trigger: TCTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCCC...ACCCACAGGTGGGGAAACAATATTATTATCTACTACAGTGAAGCATGATTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CCA 90 bp | ATTAAACTGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTCTACAAACACAATTCTaGGGACATACTGGCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: IKLYCNLQVHSASAFWSPLQTQF*GHTGHQ Trigger: CTGATGGCCAGTATGTCCCCAGAATTGTGTTTGTAG...AGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACAGTTTAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR TCA 90 bp | AACATTAAACTGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCTGTCTTTAGCAGCTTaGGAGCTTTCTTCATGTTGT | + |
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Preference number: 4 (lower is better) Translates to: NIKLYCNLQVHSASAFWSLSLAA*ELSSCC Trigger: ACAACATGAAGAAAGCTCTCAAGCTGCTAAAGACAG...AGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACAGTTTAATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | TGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCAGTTGGCAGAGCTTTCTTCATGTaGTCGTACAACAGAGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: CKSTVLLPSGLLTRCAVGRAFFM*SYNRAV Trigger: CACAGCTCTGTTGTACGACAACATGAAGAAAGCTCT...GCCAACTGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | AAACTGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACTGGGCCGAGAGTCCTTaGGGTCCTTTTTGGCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: KLYCNLQVHSASAFWSPDWAESP*GPFWLQ Trigger: CTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCCCA...GTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACAGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | GTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCACCACAAGAAGCAGGATaGCAGACACTGAAAATTTCT | + |
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Preference number: 5 (lower is better) Translates to: VICKSTVLLPSGLLTRCAPQEAG*QTLKIS Trigger: AGAAATTTTCAGTGTCTGCAATCCTGCTTCTTGTGG...TGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | GTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGTGCGCATCAAGGGTCTGTTGCTaGTCTTGGATCTGTATAAAG | + |
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Preference number: 5 (lower is better) Translates to: VICKSTVLLPSGLLTRCASRVCC*SWICIK Trigger: CTTTATACAGATCCAAGACAAGCAACAGACCCTTGA...TGCGCACCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS TCA 90 bp | GTAGTTTGGGCCGAGAGTCCTTTGGGTCCTTTTTGGCTCCAGATTTaGCTGTGGTGTCTTTGGCCAAGGTACCAGAAATGGCCACAAGAA | + |
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Preference number: 5 (lower is better) Translates to: VVWAESPLGPFWLQI*LWCLWPRYQKWPQE Trigger: TTCTTGTGGCCATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCCCAAACTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | TGTACTGTAATCTGCAAGTCCACAGTGCTTCTGCCTTCTGGTCTCCTGACCCGGACCATCAAGGGTCTGTaGCTTGTCTTGGATCTGTAT | + |
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Preference number: 5 (lower is better) Translates to: CTVICKSTVLLPSGLLTRTIKGL*LVLDLY Trigger: ATACAGATCCAAGACAAGCAACAGACCCTTGATGGT...CCGGGTCAGGAGACCAGAAGGCAGAAGCACTGTGGACTTGCAGATTACAGTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS TCA 90 bp | CTTTCTTTAAGGCTTGACTGTGTGGGCATTCGTCCAAGTGATGAATaGCCATCAAGGGTCTGTTGCTTGTCTTGGATCTGTATAAAGCTT | + |
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Preference number: 5 (lower is better) Translates to: LSLRLDCVGIRPSDE*PSRVCCLSWICIKL Trigger: AAGCTTTATACAGATCCAAGACAAGCAACAGACCCTTGATGGTCATTCATCACTTGGACGAATGCCCACACAGTCAAGCCTTAAAGAAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | AGAAAATCATGCTTCACTGTAGTAGATAATAATATTGTTTCCCCACCTGTGGGTTCCTTTGGGTCCTTTTaGGCTCCAGATTTGACTGTG | + |
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Preference number: 5 (lower is better) Translates to: RKSCFTVVDNNIVSPPVGSFGSF*APDLTV Trigger: CACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGA...ACCCACAGGTGGGGAAACAATATTATTATCTACTACAGTGAAGCATGATTTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS-3UTR CAA 90 bp | AGAAAATCATGCTTCACTGTAGTAGATAATAATATTGTTTCCCCACCTGTGGGTTCTGTCTTTAGCAGCTaGAGAGCTTTCTTCATGTTG | + |
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Preference number: 5 (lower is better) Translates to: RKSCFTVVDNNIVSPPVGSVFSS*RAFFML Trigger: CAACATGAAGAAAGCTCTCAAGCTGCTAAAGACAGA...ACCCACAGGTGGGGAAACAATATTATTATCTACTACAGTGAAGCATGATTTTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CCA 72 bp | GATCGCCCCAACCTCTGGAGAGTGTCTGAGGTAGTTTaGGCCGAGAGTCCTTTGGGTCCTTTTTGGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: DRPNLWRVSEVV*AESPLGPFWLQ Trigger: CTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCCCAAACTACCTCAGACACTCTCCAGAGGTTGGGGCGATC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CCA 72 bp | CCCTCACCGTCAGGGATGGGTCTACAAACACAATTCTaGGGACATACTGGCCATCAGGAGAAAGGTGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: PSPSGMGLQTQF*GHTGHQEKGAC Trigger: ACAAGCACCTTTCTCCTGATGGCCAGTATGTCCCCAGAATTGTGTTTGTAGACCCATCCCTGACGGTGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CAA 90 bp | GGTAGTTTGGGCCGAGAGTCCTTTGGGTCCTTTTTGGCTCCAGATTaGACTGTGGTGTCTTTGGCCAAGGTACCAGAAATGGCCACAAGA | + |
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Preference number: 6 (lower is better) Translates to: GSLGRESFGSFLAPD*TVVSLAKVPEMATR Trigger: TCTTGTGGCCATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCCCAAACTACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS TCA 72 bp | GCCGAGAGTCCTTTGGGTCCTTTTTGGCTCCAGATTTaGCTGTGGTGTCTTTGGCCAAGGTACCAGAAATGG | + |
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Preference number: 6 (lower is better) Translates to: AESPLGPFWLQI*LWCLWPRYQKW Trigger: CCATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGACTCTCGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CAA 72 bp | GGGTCCTTTTTGGCTCCAGATTTGACTGTGGTGTCTTaGGCCAAGGTACCAGAAATGGCCACAAGAAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: GSFLAPDLTVVS*AKVPEMATRSR Trigger: CCTGCTTCTTGTGGCCATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CAA 72 bp | GGCCGAGAGTCCTTTGGGTCCTTTTTGGCTCCAGATTaGACTGTGGTGTCTTTGGCCAAGGTACCAGAAATG | + |
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Preference number: 6 (lower is better) Translates to: GRESFGSFLAPD*TVVSLAKVPEM Trigger: CATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGACTCTCGGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CAA 90 bp | GAGTCCTTTGGGTCCTTTTTGGCTCCAGATTTGACTGTGGTGTCTTaGGCCAAGGTACCAGAAATGGCCACAAGAAGCAGGATTGCAGAC | + |
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Preference number: 6 (lower is better) Translates to: ESFGSFLAPDLTVVS*AKVPEMATRSRIAD Trigger: GTCTGCAATCCTGCTTCTTGTGGCCATTTCTGGTACCTTGGCCAAAGACACCACAGTCAAATCTGGAGCCAAAAAGGACCCAAAGGACTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS TCA 72 bp | ATCTGTATAAAGCTTCTTCGTATGTCTGAGTCCAGATaGGCTGATCGCCCCAACCTCTGGAGAGTGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: ICIKLLRMSESR*ADRPNLWRVSE Trigger: CTCAGACACTCTCCAGAGGTTGGGGCGATCAGCTCATCTGGACTCAGACATACGAAGAAGCTTTATACAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS TCA 72 bp | AGGCTTGACTGTGTGGGCATTCGTCCAAGTGATGAATaGCCATCAAGGGTCTGTTGCTTGTCTTGGATCTGT | + |
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Preference number: 6 (lower is better) Translates to: RLDCVGIRPSDE*PSRVCCLSWIC Trigger: ACAGATCCAAGACAAGCAACAGACCCTTGATGGTCATTCATCACTTGGACGAATGCCCACACAGTCAAGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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| CDS CCA 72 bp | AGGGATGGGTCTACAAACACAATTCTGGGGACATACTaGCCATCAGGAGAAAGGTGCTTGTCAGTTGTTTCA | + |
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Preference number: 6 (lower is better) Translates to: RDGSTNTILGTY*PSGERCLSVVS Trigger: TGAAACAACTGACAAGCACCTTTCTCCTGATGGCCAGTATGTCCCCAGAATTGTGTTTGTAGACCCATCCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020898.12 |
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