Pregenerated sensors for AGPAT4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023827Ensembl transcript IDs: ENSMUST00000024594.9, ENSMUST00000164143.8, ENSMUST00000167792.2, ENSMUST00000170858.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
---|---|---|
3UTR CCA 90 bp | CAGCGATGCCCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTaGGGGAACCCAGGGAGTCTCTGGGAAGACCCCTGTCCTGTAGTA | + |
Preference number: 1 (lower is better) Translates to: QRCPEQPVDQRPGPP*GNPGSLWEDPCPVV Trigger: TACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGGCATCGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR CCA 90 bp | GTTGACCAGAGACCAGGGCCGCCGTGGGGGAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTT | + |
Preference number: 1 (lower is better) Translates to: VDQRPGPPWGNPGSL*EDPCPVVFLLKGIL Trigger: AAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR CCA 90 bp | TGGGTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTaGGACAACATCTCGCAAGCACTTCACAGTAATAGCAAAGCCTTT | + |
Preference number: 1 (lower is better) Translates to: WVFIVSEIECTVIYS*DNISQALHSNSKAF Trigger: AAAGGCTTTGCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR GCA 90 bp | CTCTGTCTCCGGCAATCGAGGGTTAGAGAAGACGCAGCACCATGGGGTGACAGGGGCCCTGCCCTTCCTTaGAGCCTCCCAGACCCTACT | + |
Preference number: 2 (lower is better) Translates to: LCLRQSRVREDAAPWGDRGPALP*SLPDPT Trigger: AGTAGGGTCTGGGAGGCTGCAAGGAAGGGCAGGGCC...CCTGTCACCCCATGGTGCTGCGTCTTCTCTAACCCTCGATTGCCGGAGACAGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
3UTR-3UTR CCA 90 bp | GTAGGCAGAGCCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGCTGGGCAGCCCCTTaGCTTGGGCCACCTGCATGC | + |
Preference number: 2 (lower is better) Translates to: VGRALVDFCHANHPSNSHGWAAP*LGPPAC Trigger: GCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCC...ATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGGCTCTGCCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR CCA 90 bp | GGGAGTCTCTGGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTGTGCGCGGCAGCAGGTaGTGTTTGAGGCTGGGCAGC | + |
Preference number: 2 (lower is better) Translates to: GSLWEDPCPVVFLLKGILVRGSR*CLRLGS Trigger: GCTGCCCAGCCTCAAACACCACCTGCTGCCGCGCAC...AAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR TCA 90 bp | CCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGAGGCCATAGCAGCAGGTGGTGTTTaGGGCTGGGCAGCCCCTTGG | + |
Preference number: 2 (lower is better) Translates to: PLSISVTPIIHRTPMEAIAAGGV*GWAAPW Trigger: CCAAGGGGCTGCCCAGCCTCAAACACCACCTGCTGC...TATGGCCTCCATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR TCA 90 bp | CCATCCAGCGCTGAGGCAAAACTCCGTGACCAGAGGGGCTGTGGTTTGTGTTTGCCCAGTCTCCATCACTaGGCCCTGCTACAAAGGCTA | + |
Preference number: 2 (lower is better) Translates to: PSSAEAKLRDQRGCGLCLPSLHH*ALLQRL Trigger: TAGCCTTTGTAGCAGGGCTCAGTGATGGAGACTGGG...CAAACACAAACCACAGCCCCTCTGGTCACGGAGTTTTGCCTCAGCGCTGGATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
3UTR-3UTR TCA 90 bp | TCTCTGGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTCTCCTGGGCCACCTGCATGCTaGTTTGGTGTTTCTTCTCTG | + |
Preference number: 2 (lower is better) Translates to: SLGRPLSCSIPPERHPSPGPPAC*FGVSSL Trigger: CAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCC...AGGAGAAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR CCA 90 bp | GTAGGCAGAGCCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGACTCCCAGCAGTGTTaGGTTTTCATTGTTTCTGAA | + |
Preference number: 2 (lower is better) Translates to: VGRALVDFCHANHPSNSHDSQQC*VFIVSE Trigger: TTCAGAAACAATGAAAACCCAACACTGCTGGGAGTC...ATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGGCTCTGCCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR CAA 90 bp | AGCAGCGATGCCCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTGGGGGAGGGCAGCCCCTTGGCTaGGGCCACCTGCATGCTGAT | + |
Preference number: 3 (lower is better) Translates to: SSDAQNNQLTRDQGRRGGGQPLG*GHLHAD Trigger: ATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCC...TCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGGCATCGCTGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR CCA 72 bp | CCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTaGGGGAACCCAGGGAGTCTCTGGGAAGACCCCTGT | + |
Preference number: 3 (lower is better) Translates to: PEQPVDQRPGPP*GNPGSLWEDPC Trigger: ACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR CCA 72 bp | CTCCGGCAATCGAGGGTTAGAGAAGACGCAGCACCATaGGGTGACAGGGACACCTTCCCTTCCACCCTGGCC | + |
Preference number: 3 (lower is better) Translates to: LRQSRVREDAAP*GDRDTFPSTLA Trigger: GGCCAGGGTGGAAGGGAAGGTGTCCCTGTCACCCCATGGTGCTGCGTCTTCTCTAACCCTCGATTGCCGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
3UTR CCA 72 bp | AGACCAGGGCCGCCGTGGGGGAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAA | + |
Preference number: 3 (lower is better) Translates to: RPGPPWGNPGSL*EDPCPVVFLLK Trigger: TTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
3UTR-3UTR CAA 90 bp | CCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGAGGCTGGGCAGCCCCTaGGCTTGGGCCACCTGCATG | + |
Preference number: 3 (lower is better) Translates to: PIIHRTPMEAIQKMRTKLRLGSP*AWATCM Trigger: CATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCT...CAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CCA 90 bp | CCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCCCCCACGGTTCCCTCTGGAGGGTGCGCGGCAGCAGGTaGTGTTTGAGGCTGGGCAGC | + |
Preference number: 4 (lower is better) Translates to: PATKAKQRPAVPHGSLWRVRGSR*CLRLGS Trigger: GCTGCCCAGCCTCAAACACCACCTGCTGCCGCGCAC...CCTCCAGAGGGAACCGTGGGGGACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR TCA 90 bp | CCCCAGTCTCCATCACTGAGCCCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCGCAGCAGGTGGTGTTTaGGGCTGGGCAGCCCCTTGG | + |
Preference number: 4 (lower is better) Translates to: PQSPSLSPATKAKQRPAVAAGGV*GWAAPW Trigger: CCAAGGGGCTGCCCAGCCTCAAACACCACCTGCTGC...GACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGGGCTCAGTGATGGAGACTGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGGCTGGGCAGCCCCTTaGCTTGGGCCACCTGCATGC | + |
Preference number: 4 (lower is better) Translates to: RNHITQGGGEGKGLNPSSGWAAP*LGPPAC Trigger: GCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR TCA 90 bp | CAAGTGCACACGCAACCACACACCCATTCTCCTCACCCCATCTCTCTCTCTCTCCCCAGAACAACCAGTTaGCCAGAGACCAGGGCCGCC | + |
Preference number: 4 (lower is better) Translates to: QVHTQPHTHSPHPISLSLPRTTS*PETRAA Trigger: GGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGG...GAGAGAGAGAGAGATGGGGTGAGGAGAATGGGTGTGTGGTTGCGTGTGCACTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
3UTR CAA 72 bp | ACATCTCGCAAGCACTTCACAGTAATAGCAAAGCCTTaGGTGCGCGGCAGCAGGTGGTGTTTGAGGCTGGGC | + |
Preference number: 4 (lower is better) Translates to: TSRKHFTVIAKP*VRGSRWCLRLG Trigger: GCCCAGCCTCAAACACCACCTGCTGCCGCGCACCAAAGGCTTTGCTATTACTGTGAAGTGCTTGCGAGATGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR TCA 90 bp | CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGGTGTTTCTTCTCTGTaGACCGTGTGCCCTCACAGT | + |
Preference number: 4 (lower is better) Translates to: RNHITQGGGEGKGLNPSSGVSSL*TVCPHS Trigger: ACTGTGAGGGCACACGGTTCACAGAGAAGAAACACC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR TCA 90 bp | CCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCGGGCCACCTGCATGCTaGTTTGGTGTTTCTTCTCTG | + |
Preference number: 4 (lower is better) Translates to: PKPYHTGRRGGERSKPVFGPPAC*FGVSSL Trigger: CAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCC...GAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR GCA 90 bp | CCAGACCCTACTGTTACAGGGTCACAAGTGCACACGCAACCACACACCCATTCTCTCTTGGCAACCGTCTaGCGATCTTGCTCCCACTTG | + |
Preference number: 4 (lower is better) Translates to: PDPTVTGSQVHTQPHTHSLLATV*RSCSHL Trigger: CAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAG...AGAATGGGTGTGTGGTTGCGTGTGCACTTGTGACCCTGTAACAGTAGGGTCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAG | + |
Preference number: 4 (lower is better) Translates to: RNHITQGGGEGKGLNPSSEQILL*VVPEVQ Trigger: CTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR TCA 90 bp | TCCAGCGCTGAGGCAAAACTCCGTGACCAGAGGGGCTGTGGTTTGTGTTTGTCCTCAATCTCAAACTTGTaGTTGAGGACCACGATGGCG | + |
Preference number: 4 (lower is better) Translates to: SSAEAKLRDQRGCGLCLSSISNL*LRTTMA Trigger: CGCCATCGTGGTCCTCAATCACAAGTTTGAGATTGA...GGACAAACACAAACCACAGCCCCTCTGGTCACGGAGTTTTGCCTCAGCGCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | ACGCCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGTCTTGGCCAGGACTTTaGAGTTGGCTGGAGACGCAG | + |
Preference number: 4 (lower is better) Translates to: TPIIHRTPMEAIQKMRTKSWPGL*SWLETQ Trigger: CTGCGTCTCCAGCCAACTCCAAAGTCCTGGCCAAGA...CTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGGCGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CCA 90 bp | ACACACGCACGCACGCACGCGCAACTGAAAAGAGACATAACCGAAACCATATCAAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTA | + |
Preference number: 4 (lower is better) Translates to: THARTHAQLKRDITETISNPGSL*EDPCPV Trigger: TACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTT...TGATATGGTTTCGGTTATGTCTCTTTTCAGTTGCGCGTGCGTGCGTGCGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | CCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTCTCCTGGTAGAGCTTGTGGACTTTGGAGTTGGCTaGAGACGCAGTAGCAGAGTC | + |
Preference number: 4 (lower is better) Translates to: PCPVVFLLKGILLLVELVDFGVG*RRSSRV Trigger: GACTCTGCTACTGCGTCTCCAGCCAACTCCAAAGTC...CACAAGCTCTACCAGGAGAAGGATGCCTTTCAGGAGGAATACTACAGGACAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CCA 90 bp | TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCATCGGGTCGGTGTAGATaGTACACTCCGTGCCCGACC | + |
Preference number: 4 (lower is better) Translates to: WRHNLVILPKALFTLSPASGRCR*YTPCPT Trigger: GGTCGGGCACGGAGTGTACCATCTACACCGACCCGA...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR GCA 90 bp | CATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGGCCAGGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTT | + |
Preference number: 4 (lower is better) Translates to: HPSNSHGGHTEDEDQAGQDLAPT*VCKRSF Trigger: AAATGATCTTTTGCACACGCAAGTGGGAGCAAGATC...CTGGCCAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CCA 90 bp | TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTT | + |
Preference number: 4 (lower is better) Translates to: WRHNLVILPKALFTLSPAGAAGS*QPSADL Trigger: AAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | TGTACAGTCATATACAGCTGGGACAACATCTCGCAAGCACTTCACAGTAATAGCGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTT | + |
Preference number: 4 (lower is better) Translates to: CTVIYSWDNISQALHSNSGAAGS*QPSADL Trigger: AAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC...GCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR GCA 90 bp | CATAACCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTT | + |
Preference number: 4 (lower is better) Translates to: HNRNHITQGGGEGKGLNPDLAPT*VCKRSF Trigger: AAATGATCTTTTGCACACGCAAGTGGGAGCAAGATC...CGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGGTTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR GCA 90 bp | TCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGAAGTTTGTTGTCGATGTTaGCGTAGGCAGAGCCCTTGT | + |
Preference number: 4 (lower is better) Translates to: SSYPKHFSLCLRQSRVREVCCRC*RRQSPC Trigger: ACAAGGGCTCTGCCTACGGCAACATCGACAACAAAC...TTCTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | TGTACAGTCATATACAGCTGGGACAACATCTCGCAAGCACTTCACAGTAATAGCGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAG | + |
Preference number: 4 (lower is better) Translates to: CTVIYSWDNISQALHSNSEQILL*VVPEVQ Trigger: CTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTC...GCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR TCA 90 bp | AGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGTCTCAAACTTGTGATTaGGGACCACGATGGCGTTTT | + |
Preference number: 4 (lower is better) Translates to: SHLTQSTFHSVSGNRGLESQTCD*GPRWRF Trigger: AAAACGCCATCGTGGTCCTCAATCACAAGTTTGAGA...CTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CCA 90 bp | AATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTCGTGTGCCCTCACAGTaGATCAGGAACAGATACTTC | + |
Preference number: 4 (lower is better) Translates to: NLVILPKALFTLSPAIEGRVPSQ*IRNRYF Trigger: GAAGTATCTGTTCCTGATCCACTGTGAGGGCACACG...ACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR GCA 90 bp | GTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTGGGACAACATCCTCTTGGCAACCGTCTaGCGATCTTGCTCCCACTTG | + |
Preference number: 4 (lower is better) Translates to: VFIVSEIECTVIYSWDNILLATV*RSCSHL Trigger: CAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAG...GATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CCA 90 bp | TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAGACTCCCAGCAGTGTTaGGTTTTCATTGTTTCTGAA | + |
Preference number: 4 (lower is better) Translates to: WRHNLVILPKALFTLSPADSQQC*VFIVSE Trigger: TTCAGAAACAATGAAAACCCAACACTGCTGGGAGTC...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
3UTR CAA 72 bp | TTTCCATTTAAGACTCCCAGCAGTGTTGGGTTTTCATaGTTTCTGAAATTGAGTGTACAGTCATATACAGCT | + |
Preference number: 4 (lower is better) Translates to: FPFKTPSSVGFS*FLKLSVQSYTA Trigger: AGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCAACACTGCTGGGAGTCTTAAATGGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | CCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCCCCCACGGTTCCCTCTGGAGGGTAATAGCAAAGCCTTaGGTGCGCGGCAGCAGGTGG | + |
Preference number: 5 (lower is better) Translates to: PATKAKQRPAVPHGSLWRVIAKP*VRGSRW Trigger: CCACCTGCTGCCGCGCACCAAAGGCTTTGCTATTAC...CCTCCAGAGGGAACCGTGGGGGACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CAA 90 bp | CCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCAGGCTGGGCAGCCCCTaGGCTTGGGCCACCTGCATG | + |
Preference number: 5 (lower is better) Translates to: PKPYHTGRRGGERSKPVFRLGSP*AWATCM Trigger: CATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCT...GAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CAA 90 bp | CAAGTGCACACGCAACCACACACCCATTCTCCTCACCCCATCTCTCTCTCTCTCGGGCAGCCCCTTGGCTaGGGCCACCTGCATGCTGAT | + |
Preference number: 5 (lower is better) Translates to: QVHTQPHTHSPHPISLSLGQPLG*GHLHAD Trigger: ATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCC...GAGAGAGAGAGAGATGGGGTGAGGAGAATGGGTGTGTGGTTGCGTGTGCACTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS GCA 90 bp | AGCAGGTGGTGTTTGAGGCTGGGCAGCCCCTTGGCTTGGGCCACCTaGATGCTGATTTGGTGTTTCTTCTCTGTGAACCGTGTGCCCTCA | + |
Preference number: 5 (lower is better) Translates to: SRWCLRLGSPLAWAT*MLIWCFFSVNRVPS Trigger: TGAGGGCACACGGTTCACAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCTCAAACACCACCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS CCA 90 bp | GGAACAGATACTTCTCTGGGTAGTCCCGGAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTGTGCAAAAGA | + |
Preference number: 5 (lower is better) Translates to: GTDTSLGSPGGAAGS*QPSADLAPTCVCKR Trigger: TCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | CCAGACCCTACTGTTACAGGGTCACAAGTGCACACGCAACCACACACCCATTCTAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCA | + |
Preference number: 5 (lower is better) Translates to: PDPTVTGSQVHTQPHTHSNRLPI*LPLACA Trigger: TGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTT...AGAATGGGTGTGTGGTTGCGTGTGCACTTGTGACCCTGTAACAGTAGGGTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CAA 90 bp | GGCTTGGGCCACCTGCATGCTGATTTGGTGTTTCTTCTCTGTGAACCGTGTGCCTTCTTGGCCAGGACTTaGGAGTTGGCTGGAGACGCA | + |
Preference number: 5 (lower is better) Translates to: GLGHLHADLVFLLCEPCAFLART*ELAGDA Trigger: TGCGTCTCCAGCCAACTCCAAAGTCCTGGCCAAGAA...GGCACACGGTTCACAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCCAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS GCA 90 bp | GGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAA | + |
Preference number: 5 (lower is better) Translates to: GAAGSWQPSADLAPT*VCKRSFPRSTTSSQ Trigger: TTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | CCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGCGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGC | + |
Preference number: 5 (lower is better) Translates to: PIIHRTPMEAIQKMRTKLRNSCL*MGQMTS Trigger: GCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCG...CAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | ACACACGCACGCACGCACGCGCAACTGAAAAGAGACATAACCGAAACCATATCATTGCGGAACAGCTGCTaGTTGATGGGCCAGATGACC | + |
Preference number: 5 (lower is better) Translates to: THARTHAQLKRDITETISLRNSC*LMGQMT Trigger: GGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAA...TGATATGGTTTCGGTTATGTCTCTTTTCAGTTGCGCGTGCGTGCGTGCGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CAA 90 bp | CTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGAGGCCATACATTGCGGAACAGCTGCTaGTTGATGGGCCAGATGACC | + |
Preference number: 5 (lower is better) Translates to: LVDFCHANHPSNSHGGHTLRNSC*LMGQMT Trigger: GGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAA...TGTATGGCCTCCATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | CATAACCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGAGTCTGGCATTGATCTaGCGGAACAGCTGCTTGTTG | + |
Preference number: 5 (lower is better) Translates to: HNRNHITQGGGEGKGLNPSLALI*RNSCLL Trigger: CAACAAGCAGCTGTTCCGCAAGATCAATGCCAGACT...CGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGGTTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS-3UTR CAA 90 bp | TCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGAACGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGC | + |
Preference number: 5 (lower is better) Translates to: SSYPKHFSLCLRQSRVRERNSCL*MGQMTS Trigger: GCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCG...TTCTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024594.9 |
||
CDS CCA 90 bp | TGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTGGAGTTCCC | + |
Preference number: 5 (lower is better) Translates to: CAKDHFHEVPHPAND*DISQFFLGQDFGVP Trigger: GGGAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 |
||
CDS CCA 90 bp | TGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTGGAGTTGGC | + |
Preference number: 5 (lower is better) Translates to: CAKDHFHEVPHPAND*DISQFFLGQDFGVG Trigger: GCCAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS-3UTR CAA 90 bp | GTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTGGGACAACATCAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCA | + |
Preference number: 5 (lower is better) Translates to: VFIVSEIECTVIYSWDNINRLPI*LPLACA Trigger: TGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTT...GATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170858.8 |
||
CDS CCA 72 bp | ACTTCTCTGGGTAGTCCCGGAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTG | + |
Preference number: 6 (lower is better) Translates to: TSLGSPGGAAGS*QPSADLAPTCV Trigger: CACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000170858.8 |
||
CDS CCA 72 bp | TGCTTGTTGATGGGCCAGATGACCAGCGTGCACAGCTaGATGGCGTTGACAATGAGCCCCGAGGCGATGAAC | + |
Preference number: 6 (lower is better) Translates to: CLLMGQMTSVHS*MALTMSPEAMN Trigger: GTTCATCGCCTCGGGGCTCATTGTCAACGCCATCCAGCTGTGCACGCTGGTCATCTGGCCCATCAACAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS CCA 72 bp | TTGGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTaGAGTTCCCCAGGATCCCCAGGCGCTCAGCCAGGC | + |
Preference number: 6 (lower is better) Translates to: LGHKPVLSWPGL*SSPGSPGAQPG Trigger: GCCTGGCTGAGCGCCTGGGGATCCTGGGGAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 |
||
CDS CCA 72 bp | TGTGCCCTCACAGTGGATCAGGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAGCAGGCTCTTGGCAAC | + |
Preference number: 6 (lower is better) Translates to: CALTVDQEQILL*VVPEVQQALGN Trigger: GTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTCCTGATCCACTGTGAGGGCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 |
||
CDS CAA 90 bp | GTAGTCCCGGAGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCAAAAGATCATTTCCACGAAGTACCA | + |
Preference number: 6 (lower is better) Translates to: VVPEVQQALGNRLPI*LPLACAKDHFHEVP Trigger: TGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS GCA 72 bp | AGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTaGTCCCACTTGCGTGTGCAAAAGATCATTTCCACG | + |
Preference number: 6 (lower is better) Translates to: RCSRLLATVCRS*SHLRVQKIIST Trigger: CGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS CAA 72 bp | CAGAGTCTGGCATTGATCTTGCGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGCGTGCACAGCTGGATG | + |
Preference number: 6 (lower is better) Translates to: QSLALILRNSCL*MGQMTSVHSWM Trigger: CATCCAGCTGTGCACGCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAAGATCAATGCCAGACTCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS CAA 90 bp | AGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTaGCGTGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCA | + |
Preference number: 6 (lower is better) Translates to: RCSRLLATVCRSCSH*RVQKIISTKYHIQP Trigger: TGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS GCA 72 bp | TGGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTGTaGAAAAGATCATTTCCACGAAGTACCACATCCAGC | + |
Preference number: 6 (lower is better) Translates to: WQPSADLAPTCV*KRSFPRSTTSS Trigger: GCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS GCA 72 bp | GGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTTCCACGAAGTACCACA | + |
Preference number: 6 (lower is better) Translates to: GSWQPSADLAPT*VCKRSFPRSTT Trigger: TGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS CAA 72 bp | AGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTaGCGTGTGCAAAAGATCATTTCCACGAAGTACCAC | + |
Preference number: 6 (lower is better) Translates to: RLLATVCRSCSH*RVQKIISTKYH Trigger: GTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |
||
CDS CCA 72 bp | GATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTT | + |
Preference number: 6 (lower is better) Translates to: DHFHEVPHPAND*DISQFFLGQDF Trigger: AAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024594.9 ENSMUST00000164143.8 ENSMUST00000167792.2 ENSMUST00000170858.8 |