RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for AGPAT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023827

Ensembl transcript IDs: ENSMUST00000024594.9, ENSMUST00000164143.8, ENSMUST00000167792.2, ENSMUST00000170858.8

Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGCGATGCCCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTaGGGGAACCCAGGGAGTCTCTGGGAAGACCCCTGTCCTGTAGTA +
Preference number: 1 (lower is better)
Translates to: QRCPEQPVDQRPGPP*GNPGSLWEDPCPVV
Trigger: TACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGGCATCGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR CCA 90 bp GTTGACCAGAGACCAGGGCCGCCGTGGGGGAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTT +
Preference number: 1 (lower is better)
Translates to: VDQRPGPPWGNPGSL*EDPCPVVFLLKGIL
Trigger: AAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR CCA 90 bp TGGGTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTaGGACAACATCTCGCAAGCACTTCACAGTAATAGCAAAGCCTTT +
Preference number: 1 (lower is better)
Translates to: WVFIVSEIECTVIYS*DNISQALHSNSKAF
Trigger: AAAGGCTTTGCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR GCA 90 bp CTCTGTCTCCGGCAATCGAGGGTTAGAGAAGACGCAGCACCATGGGGTGACAGGGGCCCTGCCCTTCCTTaGAGCCTCCCAGACCCTACT +
Preference number: 2 (lower is better)
Translates to: LCLRQSRVREDAAPWGDRGPALP*SLPDPT
Trigger: AGTAGGGTCTGGGAGGCTGCAAGGAAGGGCAGGGCC...CCTGTCACCCCATGGTGCTGCGTCTTCTCTAACCCTCGATTGCCGGAGACAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
3UTR-3UTR CCA 90 bp GTAGGCAGAGCCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGCTGGGCAGCCCCTTaGCTTGGGCCACCTGCATGC +
Preference number: 2 (lower is better)
Translates to: VGRALVDFCHANHPSNSHGWAAP*LGPPAC
Trigger: GCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCC...ATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGGCTCTGCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR CCA 90 bp GGGAGTCTCTGGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTGTGCGCGGCAGCAGGTaGTGTTTGAGGCTGGGCAGC +
Preference number: 2 (lower is better)
Translates to: GSLWEDPCPVVFLLKGILVRGSR*CLRLGS
Trigger: GCTGCCCAGCCTCAAACACCACCTGCTGCCGCGCAC...AAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR TCA 90 bp CCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGAGGCCATAGCAGCAGGTGGTGTTTaGGGCTGGGCAGCCCCTTGG +
Preference number: 2 (lower is better)
Translates to: PLSISVTPIIHRTPMEAIAAGGV*GWAAPW
Trigger: CCAAGGGGCTGCCCAGCCTCAAACACCACCTGCTGC...TATGGCCTCCATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR TCA 90 bp CCATCCAGCGCTGAGGCAAAACTCCGTGACCAGAGGGGCTGTGGTTTGTGTTTGCCCAGTCTCCATCACTaGGCCCTGCTACAAAGGCTA +
Preference number: 2 (lower is better)
Translates to: PSSAEAKLRDQRGCGLCLPSLHH*ALLQRL
Trigger: TAGCCTTTGTAGCAGGGCTCAGTGATGGAGACTGGG...CAAACACAAACCACAGCCCCTCTGGTCACGGAGTTTTGCCTCAGCGCTGGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
3UTR-3UTR TCA 90 bp TCTCTGGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTCTCCTGGGCCACCTGCATGCTaGTTTGGTGTTTCTTCTCTG +
Preference number: 2 (lower is better)
Translates to: SLGRPLSCSIPPERHPSPGPPAC*FGVSSL
Trigger: CAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCC...AGGAGAAGGATGCCTTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR CCA 90 bp GTAGGCAGAGCCCTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGACTCCCAGCAGTGTTaGGTTTTCATTGTTTCTGAA +
Preference number: 2 (lower is better)
Translates to: VGRALVDFCHANHPSNSHDSQQC*VFIVSE
Trigger: TTCAGAAACAATGAAAACCCAACACTGCTGGGAGTC...ATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAGGGCTCTGCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR CAA 90 bp AGCAGCGATGCCCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTGGGGGAGGGCAGCCCCTTGGCTaGGGCCACCTGCATGCTGAT +
Preference number: 3 (lower is better)
Translates to: SSDAQNNQLTRDQGRRGGGQPLG*GHLHAD
Trigger: ATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCC...TCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGGCATCGCTGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR CCA 72 bp CCAGAACAACCAGTTGACCAGAGACCAGGGCCGCCGTaGGGGAACCCAGGGAGTCTCTGGGAAGACCCCTGT +
Preference number: 3 (lower is better)
Translates to: PEQPVDQRPGPP*GNPGSLWEDPC
Trigger: ACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR CCA 72 bp CTCCGGCAATCGAGGGTTAGAGAAGACGCAGCACCATaGGGTGACAGGGACACCTTCCCTTCCACCCTGGCC +
Preference number: 3 (lower is better)
Translates to: LRQSRVREDAAP*GDRDTFPSTLA
Trigger: GGCCAGGGTGGAAGGGAAGGTGTCCCTGTCACCCCATGGTGCTGCGTCTTCTCTAACCCTCGATTGCCGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
3UTR CCA 72 bp AGACCAGGGCCGCCGTGGGGGAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTAGTATTCCTCCTGAAA +
Preference number: 3 (lower is better)
Translates to: RPGPPWGNPGSL*EDPCPVVFLLK
Trigger: TTTCAGGAGGAATACTACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTTCCCCCACGGCGGCCCTGGTCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
3UTR-3UTR CAA 90 bp CCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGAGGCTGGGCAGCCCCTaGGCTTGGGCCACCTGCATG +
Preference number: 3 (lower is better)
Translates to: PIIHRTPMEAIQKMRTKLRLGSP*AWATCM
Trigger: CATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCT...CAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CCA 90 bp CCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCCCCCACGGTTCCCTCTGGAGGGTGCGCGGCAGCAGGTaGTGTTTGAGGCTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: PATKAKQRPAVPHGSLWRVRGSR*CLRLGS
Trigger: GCTGCCCAGCCTCAAACACCACCTGCTGCCGCGCAC...CCTCCAGAGGGAACCGTGGGGGACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR TCA 90 bp CCCCAGTCTCCATCACTGAGCCCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCGCAGCAGGTGGTGTTTaGGGCTGGGCAGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: PQSPSLSPATKAKQRPAVAAGGV*GWAAPW
Trigger: CCAAGGGGCTGCCCAGCCTCAAACACCACCTGCTGC...GACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGGGCTCAGTGATGGAGACTGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGGCTGGGCAGCCCCTTaGCTTGGGCCACCTGCATGC +
Preference number: 4 (lower is better)
Translates to: RNHITQGGGEGKGLNPSSGWAAP*LGPPAC
Trigger: GCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR TCA 90 bp CAAGTGCACACGCAACCACACACCCATTCTCCTCACCCCATCTCTCTCTCTCTCCCCAGAACAACCAGTTaGCCAGAGACCAGGGCCGCC +
Preference number: 4 (lower is better)
Translates to: QVHTQPHTHSPHPISLSLPRTTS*PETRAA
Trigger: GGCGGCCCTGGTCTCTGGTCAACTGGTTGTTCTGGG...GAGAGAGAGAGAGATGGGGTGAGGAGAATGGGTGTGTGGTTGCGTGTGCACTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
3UTR CAA 72 bp ACATCTCGCAAGCACTTCACAGTAATAGCAAAGCCTTaGGTGCGCGGCAGCAGGTGGTGTTTGAGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: TSRKHFTVIAKP*VRGSRWCLRLG
Trigger: GCCCAGCCTCAAACACCACCTGCTGCCGCGCACCAAAGGCTTTGCTATTACTGTGAAGTGCTTGCGAGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR TCA 90 bp CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGGTGTTTCTTCTCTGTaGACCGTGTGCCCTCACAGT +
Preference number: 4 (lower is better)
Translates to: RNHITQGGGEGKGLNPSSGVSSL*TVCPHS
Trigger: ACTGTGAGGGCACACGGTTCACAGAGAAGAAACACC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR TCA 90 bp CCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCGGGCCACCTGCATGCTaGTTTGGTGTTTCTTCTCTG +
Preference number: 4 (lower is better)
Translates to: PKPYHTGRRGGERSKPVFGPPAC*FGVSSL
Trigger: CAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCC...GAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR GCA 90 bp CCAGACCCTACTGTTACAGGGTCACAAGTGCACACGCAACCACACACCCATTCTCTCTTGGCAACCGTCTaGCGATCTTGCTCCCACTTG +
Preference number: 4 (lower is better)
Translates to: PDPTVTGSQVHTQPHTHSLLATV*RSCSHL
Trigger: CAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAG...AGAATGGGTGTGTGGTTGCGTGTGCACTTGTGACCCTGTAACAGTAGGGTCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp CGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCCGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: RNHITQGGGEGKGLNPSSEQILL*VVPEVQ
Trigger: CTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTC...GGAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR TCA 90 bp TCCAGCGCTGAGGCAAAACTCCGTGACCAGAGGGGCTGTGGTTTGTGTTTGTCCTCAATCTCAAACTTGTaGTTGAGGACCACGATGGCG +
Preference number: 4 (lower is better)
Translates to: SSAEAKLRDQRGCGLCLSSISNL*LRTTMA
Trigger: CGCCATCGTGGTCCTCAATCACAAGTTTGAGATTGA...GGACAAACACAAACCACAGCCCCTCTGGTCACGGAGTTTTGCCTCAGCGCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp ACGCCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGTCTTGGCCAGGACTTTaGAGTTGGCTGGAGACGCAG +
Preference number: 4 (lower is better)
Translates to: TPIIHRTPMEAIQKMRTKSWPGL*SWLETQ
Trigger: CTGCGTCTCCAGCCAACTCCAAAGTCCTGGCCAAGA...CTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGGCGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CCA 90 bp ACACACGCACGCACGCACGCGCAACTGAAAAGAGACATAACCGAAACCATATCAAACCCAGGGAGTCTCTaGGAAGACCCCTGTCCTGTA +
Preference number: 4 (lower is better)
Translates to: THARTHAQLKRDITETISNPGSL*EDPCPV
Trigger: TACAGGACAGGGGTCTTCCCAGAGACTCCCTGGGTT...TGATATGGTTTCGGTTATGTCTCTTTTCAGTTGCGCGTGCGTGCGTGCGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp CCCTGTCCTGTAGTATTCCTCCTGAAAGGCATCCTTCTCCTGGTAGAGCTTGTGGACTTTGGAGTTGGCTaGAGACGCAGTAGCAGAGTC +
Preference number: 4 (lower is better)
Translates to: PCPVVFLLKGILLLVELVDFGVG*RRSSRV
Trigger: GACTCTGCTACTGCGTCTCCAGCCAACTCCAAAGTC...CACAAGCTCTACCAGGAGAAGGATGCCTTTCAGGAGGAATACTACAGGACAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CCA 90 bp TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCATCGGGTCGGTGTAGATaGTACACTCCGTGCCCGACC +
Preference number: 4 (lower is better)
Translates to: WRHNLVILPKALFTLSPASGRCR*YTPCPT
Trigger: GGTCGGGCACGGAGTGTACCATCTACACCGACCCGA...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR GCA 90 bp CATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGGCCAGGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTT +
Preference number: 4 (lower is better)
Translates to: HPSNSHGGHTEDEDQAGQDLAPT*VCKRSF
Trigger: AAATGATCTTTTGCACACGCAAGTGGGAGCAAGATC...CTGGCCAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CCA 90 bp TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTT +
Preference number: 4 (lower is better)
Translates to: WRHNLVILPKALFTLSPAGAAGS*QPSADL
Trigger: AAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp TGTACAGTCATATACAGCTGGGACAACATCTCGCAAGCACTTCACAGTAATAGCGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTT +
Preference number: 4 (lower is better)
Translates to: CTVIYSWDNISQALHSNSGAAGS*QPSADL
Trigger: AAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC...GCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR GCA 90 bp CATAACCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTT +
Preference number: 4 (lower is better)
Translates to: HNRNHITQGGGEGKGLNPDLAPT*VCKRSF
Trigger: AAATGATCTTTTGCACACGCAAGTGGGAGCAAGATC...CGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR GCA 90 bp TCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGAAGTTTGTTGTCGATGTTaGCGTAGGCAGAGCCCTTGT +
Preference number: 4 (lower is better)
Translates to: SSYPKHFSLCLRQSRVREVCCRC*RRQSPC
Trigger: ACAAGGGCTCTGCCTACGGCAACATCGACAACAAAC...TTCTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp TGTACAGTCATATACAGCTGGGACAACATCTCGCAAGCACTTCACAGTAATAGCGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAG +
Preference number: 4 (lower is better)
Translates to: CTVIYSWDNISQALHSNSEQILL*VVPEVQ
Trigger: CTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTC...GCTATTACTGTGAAGTGCTTGCGAGATGTTGTCCCAGCTGTATATGACTGTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR TCA 90 bp AGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGTCTCAAACTTGTGATTaGGGACCACGATGGCGTTTT +
Preference number: 4 (lower is better)
Translates to: SHLTQSTFHSVSGNRGLESQTCD*GPRWRF
Trigger: AAAACGCCATCGTGGTCCTCAATCACAAGTTTGAGA...CTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CCA 90 bp AATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTCGTGTGCCCTCACAGTaGATCAGGAACAGATACTTC +
Preference number: 4 (lower is better)
Translates to: NLVILPKALFTLSPAIEGRVPSQ*IRNRYF
Trigger: GAAGTATCTGTTCCTGATCCACTGTGAGGGCACACG...ACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR GCA 90 bp GTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTGGGACAACATCCTCTTGGCAACCGTCTaGCGATCTTGCTCCCACTTG +
Preference number: 4 (lower is better)
Translates to: VFIVSEIECTVIYSWDNILLATV*RSCSHL
Trigger: CAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAG...GATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CCA 90 bp TGGAGGCATAATTTAGTCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAGACTCCCAGCAGTGTTaGGTTTTCATTGTTTCTGAA +
Preference number: 4 (lower is better)
Translates to: WRHNLVILPKALFTLSPADSQQC*VFIVSE
Trigger: TTCAGAAACAATGAAAACCCAACACTGCTGGGAGTC...TGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGACTAAATTATGCCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
3UTR CAA 72 bp TTTCCATTTAAGACTCCCAGCAGTGTTGGGTTTTCATaGTTTCTGAAATTGAGTGTACAGTCATATACAGCT +
Preference number: 4 (lower is better)
Translates to: FPFKTPSSVGFS*FLKLSVQSYTA
Trigger: AGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAACCCAACACTGCTGGGAGTCTTAAATGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp CCTGCTACAAAGGCTAAGCAGAGGCCAGCCGTCCCCCACGGTTCCCTCTGGAGGGTAATAGCAAAGCCTTaGGTGCGCGGCAGCAGGTGG +
Preference number: 5 (lower is better)
Translates to: PATKAKQRPAVPHGSLWRVIAKP*VRGSRW
Trigger: CCACCTGCTGCCGCGCACCAAAGGCTTTGCTATTAC...CCTCCAGAGGGAACCGTGGGGGACGGCTGGCCTCTGCTTAGCCTTTGTAGCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CAA 90 bp CCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGTCTTCAGGCTGGGCAGCCCCTaGGCTTGGGCCACCTGCATG +
Preference number: 5 (lower is better)
Translates to: PKPYHTGRRGGERSKPVFRLGSP*AWATCM
Trigger: CATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCT...GAAGACGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CAA 90 bp CAAGTGCACACGCAACCACACACCCATTCTCCTCACCCCATCTCTCTCTCTCTCGGGCAGCCCCTTGGCTaGGGCCACCTGCATGCTGAT +
Preference number: 5 (lower is better)
Translates to: QVHTQPHTHSPHPISLSLGQPLG*GHLHAD
Trigger: ATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCC...GAGAGAGAGAGAGATGGGGTGAGGAGAATGGGTGTGTGGTTGCGTGTGCACTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS GCA 90 bp AGCAGGTGGTGTTTGAGGCTGGGCAGCCCCTTGGCTTGGGCCACCTaGATGCTGATTTGGTGTTTCTTCTCTGTGAACCGTGTGCCCTCA +
Preference number: 5 (lower is better)
Translates to: SRWCLRLGSPLAWAT*MLIWCFFSVNRVPS
Trigger: TGAGGGCACACGGTTCACAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCCAAGCCAAGGGGCTGCCCAGCCTCAAACACCACCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS CCA 90 bp GGAACAGATACTTCTCTGGGTAGTCCCGGAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTGTGCAAAAGA +
Preference number: 5 (lower is better)
Translates to: GTDTSLGSPGGAAGS*QPSADLAPTCVCKR
Trigger: TCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp CCAGACCCTACTGTTACAGGGTCACAAGTGCACACGCAACCACACACCCATTCTAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCA +
Preference number: 5 (lower is better)
Translates to: PDPTVTGSQVHTQPHTHSNRLPI*LPLACA
Trigger: TGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTT...AGAATGGGTGTGTGGTTGCGTGTGCACTTGTGACCCTGTAACAGTAGGGTCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CAA 90 bp GGCTTGGGCCACCTGCATGCTGATTTGGTGTTTCTTCTCTGTGAACCGTGTGCCTTCTTGGCCAGGACTTaGGAGTTGGCTGGAGACGCA +
Preference number: 5 (lower is better)
Translates to: GLGHLHADLVFLLCEPCAFLART*ELAGDA
Trigger: TGCGTCTCCAGCCAACTCCAAAGTCCTGGCCAAGAA...GGCACACGGTTCACAGAGAAGAAACACCAAATCAGCATGCAGGTGGCCCAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS GCA 90 bp GGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAA +
Preference number: 5 (lower is better)
Translates to: GAAGSWQPSADLAPT*VCKRSFPRSTTSSQ
Trigger: TTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp CCAATCATCCATCGAACTCCCATGGAGGCCATACAGAAGATGAGGACCAAGCTGCGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGC +
Preference number: 5 (lower is better)
Translates to: PIIHRTPMEAIQKMRTKLRNSCL*MGQMTS
Trigger: GCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCG...CAGCTTGGTCCTCATCTTCTGTATGGCCTCCATGGGAGTTCGATGGATGATTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp ACACACGCACGCACGCACGCGCAACTGAAAAGAGACATAACCGAAACCATATCATTGCGGAACAGCTGCTaGTTGATGGGCCAGATGACC +
Preference number: 5 (lower is better)
Translates to: THARTHAQLKRDITETISLRNSC*LMGQMT
Trigger: GGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAA...TGATATGGTTTCGGTTATGTCTCTTTTCAGTTGCGCGTGCGTGCGTGCGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CAA 90 bp CTTGTCGATTTCTGTCACGCCAATCATCCATCGAACTCCCATGGAGGCCATACATTGCGGAACAGCTGCTaGTTGATGGGCCAGATGACC +
Preference number: 5 (lower is better)
Translates to: LVDFCHANHPSNSHGGHTLRNSC*LMGQMT
Trigger: GGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAA...TGTATGGCCTCCATGGGAGTTCGATGGATGATTGGCGTGACAGAAATCGACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp CATAACCGAAACCATATCACACAGGGAGGAGGGGAGGGGAAAGGTCTAAACCCGAGTCTGGCATTGATCTaGCGGAACAGCTGCTTGTTG +
Preference number: 5 (lower is better)
Translates to: HNRNHITQGGGEGKGLNPSLALI*RNSCLL
Trigger: CAACAAGCAGCTGTTCCGCAAGATCAATGCCAGACT...CGGGTTTAGACCTTTCCCCTCCCCTCCTCCCTGTGTGATATGGTTTCGGTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS-3UTR CAA 90 bp TCATCTTACCCAAAGCACTTTTCACTCTGTCTCCGGCAATCGAGGGTTAGAGAACGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGC +
Preference number: 5 (lower is better)
Translates to: SSYPKHFSLCLRQSRVRERNSCL*MGQMTS
Trigger: GCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCG...TTCTCTAACCCTCGATTGCCGGAGACAGAGTGAAAAGTGCTTTGGGTAAGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000024594.9
CDS CCA 90 bp TGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTGGAGTTCCC +
Preference number: 5 (lower is better)
Translates to: CAKDHFHEVPHPAND*DISQFFLGQDFGVP
Trigger: GGGAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
CDS CCA 90 bp TGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTGGAGTTGGC +
Preference number: 5 (lower is better)
Translates to: CAKDHFHEVPHPAND*DISQFFLGQDFGVG
Trigger: GCCAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS-3UTR CAA 90 bp GTTTTCATTGTTTCTGAAATTGAGTGTACAGTCATATACAGCTGGGACAACATCAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCA +
Preference number: 5 (lower is better)
Translates to: VFIVSEIECTVIYSWDNINRLPI*LPLACA
Trigger: TGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTT...GATGTTGTCCCAGCTGTATATGACTGTACACTCAATTTCAGAAACAATGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000170858.8
CDS CCA 72 bp ACTTCTCTGGGTAGTCCCGGAGGTGCAGCAGGCTCTTaGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTG +
Preference number: 6 (lower is better)
Translates to: TSLGSPGGAAGS*QPSADLAPTCV
Trigger: CACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000170858.8
CDS CCA 72 bp TGCTTGTTGATGGGCCAGATGACCAGCGTGCACAGCTaGATGGCGTTGACAATGAGCCCCGAGGCGATGAAC +
Preference number: 6 (lower is better)
Translates to: CLLMGQMTSVHS*MALTMSPEAMN
Trigger: GTTCATCGCCTCGGGGCTCATTGTCAACGCCATCCAGCTGTGCACGCTGGTCATCTGGCCCATCAACAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS CCA 72 bp TTGGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTTaGAGTTCCCCAGGATCCCCAGGCGCTCAGCCAGGC +
Preference number: 6 (lower is better)
Translates to: LGHKPVLSWPGL*SSPGSPGAQPG
Trigger: GCCTGGCTGAGCGCCTGGGGATCCTGGGGAACTCCAAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
CDS CCA 72 bp TGTGCCCTCACAGTGGATCAGGAACAGATACTTCTCTaGGTAGTCCCGGAGGTGCAGCAGGCTCTTGGCAAC +
Preference number: 6 (lower is better)
Translates to: CALTVDQEQILL*VVPEVQQALGN
Trigger: GTTGCCAAGAGCCTGCTGCACCTCCGGGACTACCCAGAGAAGTATCTGTTCCTGATCCACTGTGAGGGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
CDS CAA 90 bp GTAGTCCCGGAGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTaGCTCCCACTTGCGTGTGCAAAAGATCATTTCCACGAAGTACCA +
Preference number: 6 (lower is better)
Translates to: VVPEVQQALGNRLPI*LPLACAKDHFHEVP
Trigger: TGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCTCCGGGACTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS GCA 72 bp AGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTaGTCCCACTTGCGTGTGCAAAAGATCATTTCCACG +
Preference number: 6 (lower is better)
Translates to: RCSRLLATVCRS*SHLRVQKIIST
Trigger: CGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS CAA 72 bp CAGAGTCTGGCATTGATCTTGCGGAACAGCTGCTTGTaGATGGGCCAGATGACCAGCGTGCACAGCTGGATG +
Preference number: 6 (lower is better)
Translates to: QSLALILRNSCL*MGQMTSVHSWM
Trigger: CATCCAGCTGTGCACGCTGGTCATCTGGCCCATCAACAAGCAGCTGTTCCGCAAGATCAATGCCAGACTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS CAA 90 bp AGGTGCAGCAGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTaGCGTGTGCAAAAGATCATTTCCACGAAGTACCACATCCAGCCA +
Preference number: 6 (lower is better)
Translates to: RCSRLLATVCRSCSH*RVQKIISTKYHIQP
Trigger: TGGCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCTGCTGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS GCA 72 bp TGGCAACCGTCTGCCGATCTTGCTCCCACTTGCGTGTaGAAAAGATCATTTCCACGAAGTACCACATCCAGC +
Preference number: 6 (lower is better)
Translates to: WQPSADLAPTCV*KRSFPRSTTSS
Trigger: GCTGGATGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS GCA 72 bp GGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTTaGGTGTGCAAAAGATCATTTCCACGAAGTACCACA +
Preference number: 6 (lower is better)
Translates to: GSWQPSADLAPT*VCKRSFPRSTT
Trigger: TGTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS CAA 72 bp AGGCTCTTGGCAACCGTCTGCCGATCTTGCTCCCACTaGCGTGTGCAAAAGATCATTTCCACGAAGTACCAC +
Preference number: 6 (lower is better)
Translates to: RLLATVCRSCSH*RVQKIISTKYH
Trigger: GTGGTACTTCGTGGAAATGATCTTTTGCACACGCAAGTGGGAGCAAGATCGGCAGACGGTTGCCAAGAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8
CDS CCA 72 bp GATCATTTCCACGAAGTACCACATCCAGCCAATGATTaGGACATAAGCCAGTTCTTTCTTGGCCAGGACTTT +
Preference number: 6 (lower is better)
Translates to: DHFHEVPHPAND*DISQFFLGQDF
Trigger: AAAGTCCTGGCCAAGAAAGAACTGGCTTATGTCCCAATCATTGGCTGGATGTGGTACTTCGTGGAAATGATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000024594.9
ENSMUST00000164143.8
ENSMUST00000167792.2
ENSMUST00000170858.8