Pregenerated sensors for AGPAT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026922Ensembl transcript IDs: ENSMUST00000028286.12, ENSMUST00000154753.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGCCCCAACGAGAGAGCCAGGCCAGCAGGGGAGCAGGATAAGGTaGTGGTTGGTAAGTGGGAGGGCGTGGCCTTCTGTCCATCCTTCA | + |
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Preference number: 1 (lower is better) Translates to: QAPTREPGQQGSRIR*WLVSGRAWPSVHPS Trigger: TGAAGGATGGACAGAAGGCCACGCCCTCCCACTTACCAACCATCACCTTATCCTGCTCCCCTGCTGGCCTGGCTCTCTCGTTGGGGCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR GCA 90 bp | TGTGGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATaGTGGAGGCACAGGCTTGAGGTGGGAAGTTACATAGGGTCCTGG | + |
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Preference number: 1 (lower is better) Translates to: CGLVGQPTCWMATSG*WRHRLEVGSYIGSW Trigger: CCAGGACCCTATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CCA 90 bp | GGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTaGAGGCACAGGCTTGAGGTGGGAAGTTACATAGGGTCCTGGATC | + |
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Preference number: 1 (lower is better) Translates to: GLVGQPTCWMATSGC*RHRLEVGSYIGSWI Trigger: GATCCAGGACCCTATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CCA 90 bp | ACTCCTAGGTGCCTTGTGGTCTTGTGGGCCAGCCCACCTGCTGGATaGCCACATCTGGATGCTGGAGGCACAGGCTTGAGGTGGGAAGTT | + |
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Preference number: 1 (lower is better) Translates to: TPRCLVVLWASPPAG*PHLDAGGTGLRWEV Trigger: AACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACCACAAGGCACCTAGGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR TCA 90 bp | GCCCACCTGCTGGATGGCCACATCTGGATGCTGGAGGCACAGGCTTaGGGTGGGAAGTTACATAGGGTCCTGGATCTAAGGCCTGTGCTA | + |
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Preference number: 1 (lower is better) Translates to: AHLLDGHIWMLEAQA*GGKLHRVLDLRPVL Trigger: TAGCACAGGCCTTAGATCCAGGACCCTATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR GCA 90 bp | GAACATTTGTCCTGCACGATGGGGTGGGCCTTGGGTAATGTGTTGTaGACTCCTAGGTGCCTTGTGGTCTTGTGGGCCAGCCCACCTGCT | + |
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Preference number: 1 (lower is better) Translates to: EHLSCTMGWALGNVL*TPRCLVVLWASPPA Trigger: AGCAGGTGGGCTGGCCCACAAGACCACAAGGCACCTAGGAGTGCACAACACATTACCCAAGGCCCACCCCATCGTGCAGGACAAATGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR TCA 90 bp | GAGCCAGGCTTCCTTGAGACTGGGAGACCAAGTTTCTCCTCTTCATaGTGGCCTGATACAGGCCACTGCTTGGTTTCTGAACATTTGTCC | + |
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Preference number: 1 (lower is better) Translates to: EPGFLETGRPSFSSS*WPDTGHCLVSEHLS Trigger: GGACAAATGTTCAGAAACCAAGCAGTGGCCTGTATCAGGCCATCATGAAGAGGAGAAACTTGGTCTCCCAGTCTCAAGGAAGCCTGGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR TCA 90 bp | TTTGTGACTGAGGCCGTCGGACGGTGCGGGCGGCAGGCTCTGCCCTCTGGTGCTAGTTTCTCCTCTTCATaGTGGCCTGATACAGGCCAC | + |
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Preference number: 2 (lower is better) Translates to: FVTEAVGRCGRQALPSGASFSSS*WPDTGH Trigger: GTGGCCTGTATCAGGCCATCATGAAGAGGAGAAACT...AGCACCAGAGGGCAGAGCCTGCCGCCCGCACCGTCCGACGGCCTCAGTCACAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CAA 90 bp | TGGGCCTTGGGTAATGTGTTGTGCACTCCTAGGTGCCTTGTGGTCTaGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTGGA | + |
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Preference number: 2 (lower is better) Translates to: WALGNVLCTPRCLVV*WASPPAGWPHLDAG Trigger: TCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACCACAAGGCACCTAGGAGTGCACAACACATTACCCAAGGCCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR TCA 90 bp | GGTCCTGGATCTAAGGCCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGGGAGCAGGATAAGGTaGTGGTTGGTAAGTGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: GPGSKACARKGFLFPGPNGSRIR*WLVSGR Trigger: CCTCCCACTTACCAACCATCACCTTATCCTGCTCCC...GTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGGCCTTAGATCCAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR CCA 90 bp | GGTCCTGGATCTAAGGCCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGTAAGTGGGAGGGCGTaGCCTTCTGTCCATCCTTCA | + |
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Preference number: 2 (lower is better) Translates to: GPGSKACARKGFLFPGPNVSGRA*PSVHPS Trigger: TGAAGGATGGACAGAAGGCCACGCCCTCCCACTTAC...GTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGGCCTTAGATCCAGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR CCA 90 bp | GAAAGAGACCTCTGGTCTCCAGGCACTTCTGAGAGTTCATTTATAGAAAAAGAAGCCACATCTGGATGCTaGAGGCACAGGCTTGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: ERDLWSPGTSESSFIEKEATSGC*RHRLEV Trigger: CACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGC...TTCTTTTTCTATAAATGAACTCTCAGAAGTGCCTGGAGACCAGAGGTCTCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR CCA 90 bp | GAAAGAGACCTCTGGTCTCCAGGCACTTCTGAGAGTTCATTTATAGAAAAAGAACTGGATGGCCACATCTaGATGCTGGAGGCACAGGCT | + |
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Preference number: 2 (lower is better) Translates to: ERDLWSPGTSESSFIEKELDGHI*MLEAQA Trigger: AGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAG...TTCTTTTTCTATAAATGAACTCTCAGAAGTGCCTGGAGACCAGAGGTCTCTTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR-3UTR GCA 90 bp | GAAAGAGACCTCTGGTCTCCAGGCACTTCTGAGAGTTCATTTATAGAAAAAGAACCTGATACAGGCCACTaGTTGGTTTCTGAACATTTG | + |
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Preference number: 2 (lower is better) Translates to: ERDLWSPGTSESSFIEKEPDTGH*LVSEHL Trigger: CAAATGTTCAGAAACCAAGCAGTGGCCTGTATCAGG...TTCTTTTTCTATAAATGAACTCTCAGAAGTGCCTGGAGACCAGAGGTCTCTTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR TCA 72 bp | ACGAGAGAGCCAGGCCAGCAGGGGAGCAGGATAAGGTaGTGGTTGGTAAGTGGGAGGGCGTGGCCTTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: TREPGQQGSRIR*WLVSGRAWPSV Trigger: GACAGAAGGCCACGCCCTCCCACTTACCAACCATCACCTTATCCTGCTCCCCTGCTGGCCTGGCTCTCTCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CCA 72 bp | GGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTaGAGGCACAGGCTTGAGGTGGGAAGTTACATAGGG | + |
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Preference number: 3 (lower is better) Translates to: GQPTCWMATSGC*RHRLEVGSYIG Trigger: CCCTATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR GCA 72 bp | GTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATaGTGGAGGCACAGGCTTGAGGTGGGAAGTTACATA | + |
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Preference number: 3 (lower is better) Translates to: VGQPTCWMATSG*WRHRLEVGSYI Trigger: TATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR GCA 72 bp | TCCTGCACGATGGGGTGGGCCTTGGGTAATGTGTTGTaGACTCCTAGGTGCCTTGTGGTCTTGTGGGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: SCTMGWALGNVL*TPRCLVVLWAS Trigger: GCTGGCCCACAAGACCACAAGGCACCTAGGAGTGCACAACACATTACCCAAGGCCCACCCCATCGTGCAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CCA 72 bp | CCTTGGGTAATGTGTTGTGCACTCCTAGGTGCCTTGTaGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCAC | + |
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Preference number: 3 (lower is better) Translates to: PWVMCCALLGAL*SCGPAHLLDGH Trigger: GTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACCACAAGGCACCTAGGAGTGCACAACACATTACCCAAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR TCA 72 bp | CTGGATGGCCACATCTGGATGCTGGAGGCACAGGCTTaGGGTGGGAAGTTACATAGGGTCCTGGATCTAAGG | + |
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Preference number: 3 (lower is better) Translates to: LDGHIWMLEAQA*GGKLHRVLDLR Trigger: CCTTAGATCCAGGACCCTATGTAACTTCCCACCTCAAGCCTGTGCCTCCAGCATCCAGATGTGGCCATCCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR CCA 72 bp | TGCTTGGTTTCTGAACATTTGTCCTGCACGATGGGGTaGGCCTTGGGTAATGTGTTGTGCACTCCTAGGTGC | + |
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Preference number: 3 (lower is better) Translates to: CLVSEHLSCTMG*ALGNVLCTPRC Trigger: GCACCTAGGAGTGCACAACACATTACCCAAGGCCCACCCCATCGTGCAGGACAAATGTTCAGAAACCAAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| 3UTR TCA 72 bp | TTCCTTGAGACTGGGAGACCAAGTTTCTCCTCTTCATaGTGGCCTGATACAGGCCACTGCTTGGTTTCTGAA | + |
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Preference number: 3 (lower is better) Translates to: FLETGRPSFSSS*WPDTGHCLVSE Trigger: TTCAGAAACCAAGCAGTGGCCTGTATCAGGCCATCATGAAGAGGAGAAACTTGGTCTCCCAGTCTCAAGGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CCA 90 bp | TCCTGTTTCCAGGCCCCAACGAGAGAGCCAGGCCAGCAGGGGAGCAGGATAAGGACGGTGCGGCCGCCGTaGCGCAGCAGGCAGACGATC | + |
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Preference number: 4 (lower is better) Translates to: SCFQAPTREPGQQGSRIRTVRPP*RSRQTI Trigger: GATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGT...CCTTATCCTGCTCCCCTGCTGGCCTGGCTCTCTCGTTGGGGCCTGGAAACAGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR GCA 90 bp | GGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTGGAGGCACGCTGTGCGGCTCAGCTaGACAAGCAGCAACAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: GLVGQPTCWMATSGCWRHAVRLS*TSSNSS Trigger: GCTGCTGTTGCTGCTTGTGCAGCTGAGCCGCACAGC...GTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR TCA 90 bp | GCCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGAGAGAGCCAGGCCAAGTACACCACGGGGATaGTGGGCACCTGGGCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: ACARKGFLFPGPNERARPSTPRG*WAPGPG Trigger: TCCAGGCCCAGGTGCCCATCATCCCCGTGGTGTACT...TGGCCTGGCTCTCTCGTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR GCA 90 bp | GCCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGAGAGAGCCAGGCCATCATGTTATCCACGGTaGGGCCGCCGTGGCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: ACARKGFLFPGPNERARPSCYPR*GRRGAA Trigger: TGCTGCGCCACGGCGGCCGCACCGTGGATAACATGA...TGGCCTGGCTCTCTCGTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR TCA 90 bp | GGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTGGAGGCACTGTCCACCAGCTTGGTaGCATCAGCATCTGTCAGAC | + |
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Preference number: 4 (lower is better) Translates to: GLVGQPTCWMATSGCWRHCPPAW*HQHLSD Trigger: GTCTGACAGATGCTGATGTCACCAAGCTGGTGGACA...GTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CCA 90 bp | AGGCCAGCAGGGGAGCAGGATAAGGTGATGGTTGGTAAGTGGGAGGGCGTGGCCGTTGCGTGTACCCTCTaGGTAGATCCACACTTTGAG | + |
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Preference number: 4 (lower is better) Translates to: RPAGEQDKVMVGKWEGVAVACTL*VDPHFE Trigger: CTCAAAGTGTGGATCTACCCAGAGGGTACACGCAAC...GGCCACGCCCTCCCACTTACCAACCATCACCTTATCCTGCTCCCCTGCTGGCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CCA 90 bp | GCAGGGGAGCAGGATAAGGTGATGGTTGGTAAGTGGGAGGGCGTGGCCTTCTGTACATTAGCTCACGCTTaGCGATCTGCACACAGCGCT | + |
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Preference number: 4 (lower is better) Translates to: AGEQDKVMVGKWEGVAFCTLAHA*RSAHSA Trigger: AGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGT...ACAGAAGGCCACGCCCTCCCACTTACCAACCATCACCTTATCCTGCTCCCCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR TCA 90 bp | CCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGAGAGAGCCAGGCCAGTTCTCTTGGGGAATCTaGGAAATCTGTAGAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: PVLERASCFQAPTREPGQFSWGI*EICRKV Trigger: CACCTTTCTACAGATTTCTCAGATTCCCCAAGAGAA...CTGGCCTGGCTCTCTCGTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR TCA 90 bp | ATACAGGCCACTGCTTGGTTTCTGAACATTTGTCCTGCACGATGGGGTGGGCCTTCCAGGATGCTCTGGTaGTTAGAGATGATGACACAG | + |
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Preference number: 4 (lower is better) Translates to: IQATAWFLNICPARWGGPSRMLW*LEMMTQ Trigger: CTGTGTCATCATCTCTAATCACCAGAGCATCCTGGA...AGGCCCACCCCATCGTGCAGGACAAATGTTCAGAAACCAAGCAGTGGCCTGTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CCA 90 bp | ACGAACCAGCTGATGATGCTCATGTTATCCACGGTGCGGCCGCCGTaGCGCAGCAGGCAGACGATCGAGGCCGCGGCGGAGAAGGACAGG | + |
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Preference number: 5 (lower is better) Translates to: TNQLMMLMLSTVRPP*RSRQTIEAAAEKDR Trigger: CCTGTCCTTCTCCGCCGCGGCCTCGATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGTGGATAACATGAGCATCATCAGCTGGTTCGT 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CAA 90 bp | GGTCTTGTGGGCCAGCCCACCTGCTGGATGGCCACATCTGGATGCTGGAGGCACGGCAACAGGTCCCCATaGTCGTTGCGTGTACCCTCT | + |
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Preference number: 5 (lower is better) Translates to: GLVGQPTCWMATSGCWRHGNRSP*SLRVPS Trigger: AGAGGGTACACGCAACGACAATGGGGACCTGTTGCC...GTGCCTCCAGCATCCAGATGTGGCCATCCAGCAGGTGGGCTGGCCCACAAGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CAA 90 bp | CCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACGAGAGAGCCAGGCCAGCATGGCAGTTCTGGCTaGCTGGCGGTTGATGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: PVLERASCFQAPTREPGQHGSSG*LAVDEV Trigger: TACTTCATCAACCGCCAGCAAGCCAGAACTGCCATG...CTGGCCTGGCTCTCTCGTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS GCA 90 bp | ATGAGGCCCACAGGCCCTGTGAACATTAGCTCACGCTTGGCGATCTaGACACAGCGCTTAGGGAGTATTTCCATGAGACCCATCATGTCC | + |
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Preference number: 5 (lower is better) Translates to: MRPTGPVNISSRLAI*TQRLGSISMRPIMS Trigger: GGACATGATGGGTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CAA 90 bp | GGTGGGAAGTTACATAGGGTCCTGGATCTAAGGCCTGTGCTAGAAAGGGCTTCCAACATTAGCTCACGCTaGGCGATCTGCACACAGCGC | + |
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Preference number: 5 (lower is better) Translates to: GGKLHRVLDLRPVLERASNISSR*AICTQR Trigger: GCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTT...GGAAGCCCTTTCTAGCACAGGCCTTAGATCCAGGACCCTATGTAACTTCCCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CAA 90 bp | GGTCCTGGATCTAAGGCCTGTGCTAGAAAGGGCTTCCTGTTTCCAGGCCCCAACTCCAGCACTTGTACCTaGATTGTTCCTGAGGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: GPGSKACARKGFLFPGPNSSTCT*IVPEVK Trigger: CTTCACCTCAGGAACAATCAAGGTACAAGTGCTGGA...GTTGGGGCCTGGAAACAGGAAGCCCTTTCTAGCACAGGCCTTAGATCCAGGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS-3UTR CAA 90 bp | TGGCCTGATACAGGCCACTGCTTGGTTTCTGAACATTTGTCCTGCACGATGGGGAATGGCAGAGTTCTCTaGGGGAATCTGAGAAATCTG | + |
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Preference number: 5 (lower is better) Translates to: WPDTGHCLVSEHLSCTMGNGRVL*GNLRNL Trigger: CAGATTTCTCAGATTCCCCAAGAGAACTCTGCCATT...CCCCATCGTGCAGGACAAATGTTCAGAAACCAAGCAGTGGCCTGTATCAGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS TCA 90 bp | TTAGGGAGTATTTCCATGAGACCCATCATGTCCAGGATGCTCTGGTaGTTAGAGATGATGACACAGGGACCATCCACCTCCAGTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: LGSISMRPIMSRMLW*LEMMTQGPSTSSFF Trigger: GAAGAAACTGGAGGTGGATGGTCCCTGTGTCATCATCTCTAATCACCAGAGCATCCTGGACATGATGGGTCTCATGGAAATACTCCCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028286.12 ENSMUST00000154753.2 |
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| CDS TCA 90 bp | ACCATTGGTAGGGACAGCATCCAGCACTTGTACCTTGATTGTTCCTaGGGTGAAGAGCTTCGTCTTGACATTGTAGAAGGAAGAGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: TIGRDSIQHLYLDCS*GEELRLDIVEGRER Trigger: TCTTTCTCTTCCTTCTACAATGTCAAGACGAAGCTCTTCACCTCAGGAACAATCAAGGTACAAGTGCTGGATGCTGTCCCTACCAATGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS GCA 72 bp | AAAGCTAGCGGCGCGCGCAAACCCGACACTCCACGCTaGGCGCAGGGGGCGCCGCAGGGCCGAGCCCTACAA | + |
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Preference number: 6 (lower is better) Translates to: KASGARKPDTPR*AQGAPQGRALQ Trigger: TTGTAGGGCTCGGCCCTGCGGCGCCCCCTGCGCGCAGCGTGGAGTGTCGGGTTTGCGCGCGCCGCTAGCTTT 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154753.2 |
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| CDS CCA 72 bp | CTGATGATGCTCATGTTATCCACGGTGCGGCCGCCGTaGCGCAGCAGGCAGACGATCGAGGCCGCGGCGGAG | + |
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Preference number: 6 (lower is better) Translates to: LMMLMLSTVRPP*RSRQTIEAAAE Trigger: CTCCGCCGCGGCCTCGATCGTCTGCCTGCTGCGCCACGGCGGCCGCACCGTGGATAACATGAGCATCATCAG 68% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CAA 72 bp | GCCCAGGTCGGCCATCACAGACATGGCAGTTCTGGCTaGCTGGCGGTTGATGAAGTAGACACCCCCAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: AQVGHHRHGSSG*LAVDEVDTPKV Trigger: TACCTTGGGGGTGTCTACTTCATCAACCGCCAGCAAGCCAGAACTGCCATGTCTGTGATGGCCGACCTGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CAA 90 bp | CATGAGGTCGCCCAGGTCGGCCATCACAGACATGGCAGTTCTGGCTaGCTGGCGGTTGATGAAGTAGACACCCCCAAGGTACATGATGAG | + |
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Preference number: 6 (lower is better) Translates to: HEVAQVGHHRHGSSG*LAVDEVDTPKVHDE Trigger: CTCATCATGTACCTTGGGGGTGTCTACTTCATCAACCGCCAGCAAGCCAGAACTGCCATGTCTGTGATGGCCGACCTGGGCGACCTCATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CCA 72 bp | CCGAACGAACCAGCTGATGATGCTGTGGCTACAACCTaGGCACAGGTGTCTTCTAACCGGCAGAGAGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: PNEPADDAVATT*AQVSSNRQRGG Trigger: TCCACCTCTCTGCCGGTTAGAAGACACCTGTGCCCAGGTTGTAGCCACAGCATCATCAGCTGGTTCGTTCGG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154753.2 |
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| CDS TCA 72 bp | TGTAGAAGGAAGAGAAAGACGAGTACACCACGGGGATaGTGGGCACCTGGGCCTGGATGGCCAAGTAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: CRRKRKTSTPRG*WAPGPGWPSRR Trigger: CCTTCTACTTGGCCATCCAGGCCCAGGTGCCCATCATCCCCGTGGTGTACTCGTCTTTCTCTTCCTTCTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CAA 72 bp | ATGAGGCCCACAGGCCCTGTGAACATTAGCTCACGCTaGGCGATCTGCACACAGCGCTTAGGGAGTATTTCC | + |
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Preference number: 6 (lower is better) Translates to: MRPTGPVNISSR*AICTQRLGSIS Trigger: GGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CAA 90 bp | AGGTACATGATGAGGCCCACAGGCCCTGTGAACATTAGCTCACGCTaGGCGATCTGCACACAGCGCTTAGGGAGTATTTCCATGAGACCC | + |
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Preference number: 6 (lower is better) Translates to: RYMMRPTGPVNISSR*AICTQRLGSISMRP Trigger: GGGTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGTGGGCCTCATCATGTACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS GCA 72 bp | ACAGGCCCTGTGAACATTAGCTCACGCTTGGCGATCTaGACACAGCGCTTAGGGAGTATTTCCATGAGACCC | + |
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Preference number: 6 (lower is better) Translates to: TGPVNISSRLAI*TQRLGSISMRP Trigger: GGGTCTCATGGAAATACTCCCTAAGCGCTGTGTGCAGATCGCCAAGCGTGAGCTAATGTTCACAGGGCCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CCA 72 bp | GGGCAACAGGTCCCCATTGTCGTTGCGTGTACCCTCTaGGTAGATCCACACTTTGAGATTCTCCTTGACCAT | + |
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Preference number: 6 (lower is better) Translates to: GQQVPIVVACTL*VDPHFEILLDH Trigger: ATGGTCAAGGAGAATCTCAAAGTGTGGATCTACCCAGAGGGTACACGCAACGACAATGGGGACCTGTTGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS TCA 72 bp | ATTTCCATGAGACCCATCATGTCCAGGATGCTCTGGTaGTTAGAGATGATGACACAGGGACCATCCACCTCC | + |
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Preference number: 6 (lower is better) Translates to: ISMRPIMSRMLW*LEMMTQGPSTS Trigger: GGAGGTGGATGGTCCCTGTGTCATCATCTCTAATCACCAGAGCATCCTGGACATGATGGGTCTCATGGAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028286.12 ENSMUST00000154753.2 |
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| CDS CCA 72 bp | AGTTCTCTTGGGGAATCTGAGAAATCTGTAGAAAGGTaGCCCTCATGGACTGGTAGCAAGTGTCCACCAGCT | + |
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Preference number: 6 (lower is better) Translates to: SSLGESEKSVER*PSWTGSKCPPA Trigger: AGCTGGTGGACACTTGCTACCAGTCCATGAGGGCCACCTTTCTACAGATTTCTCAGATTCCCCAAGAGAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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| CDS CAA 72 bp | TCCACCAGCTTGGTGACATCAGCATCTGTCAGACCATaGGTAGGGACAGCATCCAGCACTTGTACCTTGATT | + |
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Preference number: 6 (lower is better) Translates to: STSLVTSASVRP*VGTASSTCTLI Trigger: AATCAAGGTACAAGTGCTGGATGCTGTCCCTACCAATGGTCTGACAGATGCTGATGTCACCAAGCTGGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028286.12 |
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